Citrus Sinensis ID: 039715
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 805 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYV3 | 822 | Putative pentatricopeptid | yes | no | 0.932 | 0.913 | 0.556 | 0.0 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.929 | 0.703 | 0.355 | 1e-155 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.899 | 0.834 | 0.382 | 1e-148 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.954 | 0.771 | 0.378 | 1e-143 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.930 | 0.841 | 0.361 | 1e-140 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.768 | 0.891 | 0.380 | 1e-139 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.925 | 0.920 | 0.351 | 1e-137 | |
| Q9LIC3 | 628 | Putative pentatricopeptid | no | no | 0.724 | 0.928 | 0.410 | 1e-136 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.885 | 0.864 | 0.358 | 1e-136 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.934 | 0.884 | 0.342 | 1e-134 |
| >sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/783 (55%), Positives = 557/783 (71%), Gaps = 32/783 (4%)
Query: 51 VSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDA 110
+ +SH+Y L+ CIQ +D +A IHC +LKKG+CLDLFATN+LLN YVK DA
Sbjct: 44 IPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDA 103
Query: 111 TKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSM 170
LFDEMPERN +SFVT QGY + +GL+S LHREGHELNP FT+FLK+ VS+
Sbjct: 104 LNLFDEMPERNNVSFVTLAQGYACQ----DPIGLYSRLHREGHELNPHVFTSFLKLFVSL 159
Query: 171 GWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLF----------- 219
AE+CP + + + KLG+DSNAFVG ALI+A+SVCG V+ AR VF+G+
Sbjct: 160 DKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIV 219
Query: 220 -----NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYE 274
N FE++L S MR GF PNN+TF LKA +GL AK HG LKTCY
Sbjct: 220 SCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYV 279
Query: 275 MDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRM 334
+D V V LL LYT+ G++S+A ++F EMPK DV+PWSFMIAR+ Q +AV+LF RM
Sbjct: 280 LDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRM 339
Query: 335 RQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRM 394
R+AFV PN+FT S+L CA + LG Q+H LVV+VG D++VSNAL+DVYAKC +M
Sbjct: 340 REAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKM 399
Query: 395 ENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRAC 454
+ +V+LFAE +N V+WNT+IVGY LGE GKA MF + L QV TEVT+SS L AC
Sbjct: 400 DTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGAC 459
Query: 455 ASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWN 514
ASLA+++ G+QVH L +K N V V+N+LIDMYAKCG I A+ VF+ M + SWN
Sbjct: 460 ASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWN 519
Query: 515 AMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVAN 574
A+ISGYS HGL + L++ D+M+ R +PN LTF+GVLS CSN GL++QG+ F+SM+ +
Sbjct: 520 ALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRD 579
Query: 575 YGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRL 634
+GIEPC+EHYT MV LLGR+G LDKA KLIEGIP++PSVMIWRA+L A + NN E R
Sbjct: 580 HGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARR 639
Query: 635 SAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS-----------KEPGLSWIENQGMVH 683
SA+ IL P+DEAT+VL+SN+YA A+ W AS KEPGLSWIE+QG VH
Sbjct: 640 SAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVH 699
Query: 684 YFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLAL 743
YF G + H DM +I GMLEWLNMK+ +AGY+PD +AVL D+ ++EK++ LWVHSE+LAL
Sbjct: 700 YFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLAL 759
Query: 744 AFALFKMPPS-SPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCG 802
A+ L +MP S + I I+KNLRIC DCH+A+K+IS IVQR+++IRD++RFHHF G CSCG
Sbjct: 760 AYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCG 819
Query: 803 DFW 805
D W
Sbjct: 820 DHW 822
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 276/777 (35%), Positives = 440/777 (56%), Gaps = 29/777 (3%)
Query: 57 HSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDE 116
+++++ L +C + + L+ +H VLK G D + N L+++Y L L A +F
Sbjct: 289 YAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSN 348
Query: 117 MPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELC 176
M +R+ +++ T I G + +A+ LF +H +G E + + + + G
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 408
Query: 177 PCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVF-----------------DGLF 219
+ A KLG SN + AL++ ++ C +E A F GL
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 468
Query: 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYV 279
+D + F QM+ PN +T+ +LK C+ L + + + H +KT ++++ YV
Sbjct: 469 DD-LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYV 527
Query: 280 AVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFV 339
L+D+Y K G++ A I KDV+ W+ MIA Y Q + A+ F +M +
Sbjct: 528 CSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI 587
Query: 340 APNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVE 399
++ + + ACA ++ L G QIH+ G SD+ NAL+ +Y++CG++E S
Sbjct: 588 RSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYL 647
Query: 400 LFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAA 459
F ++ +++ WN ++ G+ Q G +A+ +F +M E + T+ S ++A + A
Sbjct: 648 AFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETAN 707
Query: 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISG 519
++ G QVH + K YD + V NALI MYAKCGSI+DA F ++ NEVSWNA+I+
Sbjct: 708 MKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINA 767
Query: 520 YSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP 579
YS HG +E L FD M RPN++T VGVLSACS+ GL+++G AYF+SM + YG+ P
Sbjct: 768 YSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSP 827
Query: 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHI 639
EHY +V +L RAG L +A + I+ +P +P ++WR LL AC++H N+EIG +A H+
Sbjct: 828 KPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHL 887
Query: 640 LDFEPEDEATHVLLSNIYAMARSW-----------EKAASKEPGLSWIENQGMVHYFRAG 688
L+ EPED AT+VLLSN+YA+++ W EK KEPG SWIE + +H F G
Sbjct: 888 LELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVG 947
Query: 689 DTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALF 748
D +H + I + L ++ + GY+ D ++L +++ ++K+ +++HSEKLA++F L
Sbjct: 948 DQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLL 1007
Query: 749 KMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
+P + PI ++KNLR+C DCH IK +SK+ REII+RD +RFHHF+ G CSC D+W
Sbjct: 1008 SLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/758 (38%), Positives = 424/758 (55%), Gaps = 34/758 (4%)
Query: 78 IHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQ 137
+HCQ +K G D+ L++ Y+K + D K+FDEM ERN +++ T I GY +S
Sbjct: 115 LHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSM 174
Query: 138 FVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTA 197
E + LF + EG + N F F A L VL G V V K G D V +
Sbjct: 175 NDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNS 234
Query: 198 LIDAFSVCGCVEFARKVFDGL----------------FNDCFEEALNFFSQMRAVGFKPN 241
LI+ + CG V AR +FD N EAL F MR + +
Sbjct: 235 LINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLS 294
Query: 242 NFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFE 301
+FA V+K C L +R + H +K + D + AL+ Y+K + +A R+F+
Sbjct: 295 ESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFK 354
Query: 302 EMP-KKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLD 360
E+ +V+ W+ MI+ + Q D +AV+LF M++ V PN+FT+ +L A +
Sbjct: 355 EIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP-- 412
Query: 361 LGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYV 420
+++H+ VV+ V AL+D Y K G++E + ++F+ ++ V W+ M+ GY
Sbjct: 413 --SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYA 470
Query: 421 QLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASL-AALEPGMQVHCLTVKANYDMDV 479
Q GE A+ MF ++ + + E T+SS+L CA+ A++ G Q H +K+ D +
Sbjct: 471 QTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSL 530
Query: 480 VVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQR 539
V++AL+ MYAK G+I A VF + + VSWN+MISGY+ HG + + L VF M++R
Sbjct: 531 CVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 590
Query: 540 GWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDK 599
+ + +TF+GV +AC++ GL+E+GE YF MV + I P EH + MV L RAG L+K
Sbjct: 591 KVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 650
Query: 600 AAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659
A K+IE +P IWR +L AC +H E+GRL+A+ I+ +PED A +VLLSN+YA
Sbjct: 651 AMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAE 710
Query: 660 ARSW-----------EKAASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMK 708
+ W E+ KEPG SWIE + + F AGD SH + I LE L+ +
Sbjct: 711 SGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTR 770
Query: 709 SRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDC 768
+ GY PD S VL+D+ ++ KE L HSE+LA+AF L P SP+ IIKNLR+C DC
Sbjct: 771 LKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDC 830
Query: 769 HTAIKIISKIVQREIIIRDVHRFHHF-QDGCCSCGDFW 805
H IK+I+KI +REI++RD +RFHHF DG CSCGDFW
Sbjct: 831 HLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1308), Expect = e-143, Method: Compositional matrix adjust.
Identities = 309/816 (37%), Positives = 452/816 (55%), Gaps = 48/816 (5%)
Query: 29 SAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNC 88
SA S+ Q S T TF S T+ S + D++ I C + K G
Sbjct: 189 SAFRIFSSMQYDGSRPTEYTFG-------SLVTTACS-LTEPDVRLLEQIMCTIQKSGLL 240
Query: 89 LDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTL 148
DLF + L++ + K L A K+F++M RN ++ + G EA LF +
Sbjct: 241 TDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM 300
Query: 149 HREGHELNPFAFTAFLKVLVSMGWAELCPC-----VFACVYKLGH-DSNAFVGTALIDAF 202
+ +++P ++ L AE V V G D +G L++ +
Sbjct: 301 NSM-IDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMY 359
Query: 203 SVCGCVEFARKVF---------------DGL-FNDCFEEALNFFSQMRAVGFKPNNFTFA 246
+ CG + AR+VF GL N CF EA+ + MR P +FT
Sbjct: 360 AKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLI 419
Query: 247 FVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK 306
L +C L ++ + HG +LK ++++ V+ AL+ LY ++G ++ R+IF MP+
Sbjct: 420 SSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEH 479
Query: 307 DVIPWSFMIARYAQTDLSI-DAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQI 365
D + W+ +I A+++ S+ +AV F ++A N+ TF SVL A +++ +LG QI
Sbjct: 480 DQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQI 539
Query: 366 HSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAE-SPKRNHVTWNTMIVGYVQLGE 424
H L ++ + + NAL+ Y KCG M+ ++F+ + +R++VTWN+MI GY+
Sbjct: 540 HGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNEL 599
Query: 425 VGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANA 484
+ KA+ + ML+ Y++VL A AS+A LE GM+VH +V+A + DVVV +A
Sbjct: 600 LAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSA 659
Query: 485 LIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR-P 543
L+DMY+KCG + A F+ M N SWN+MISGY+ HG E LK+F+ M+ G P
Sbjct: 660 LVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPP 719
Query: 544 NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKL 603
+++TFVGVLSACS+ GLLE+G +F+SM +YG+ P IEH++ M +LGRAG LDK
Sbjct: 720 DHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDF 779
Query: 604 IEGIPFQPSVMIWRALLGACIIHNN--VEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661
IE +P +P+V+IWR +LGAC N E+G+ +A+ + EPE+ +VLL N+YA
Sbjct: 780 IEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGG 839
Query: 662 SWE---KA--------ASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSR 710
WE KA KE G SW+ + VH F AGD SH D ++I L+ LN K R
Sbjct: 840 RWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMR 899
Query: 711 KAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPSS-PIRIIKNLRICVDCH 769
AGY+P L D+ ++ KE L HSEKLA+AF L S+ PIRI+KNLR+C DCH
Sbjct: 900 DAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCH 959
Query: 770 TAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
+A K ISKI R+II+RD +RFHHFQDG CSC DFW
Sbjct: 960 SAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 288/797 (36%), Positives = 434/797 (54%), Gaps = 48/797 (6%)
Query: 55 NSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLD-LFATNVLLNVYVKLNRLPDATKL 113
+++++ L++ D++ IH V K G +D + N L+N+Y K K+
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155
Query: 114 FDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWA 173
FD + ERN +S+ + I ++ A+ F + E E + F + + ++
Sbjct: 156 FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMP 215
Query: 174 E---LCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLF----------- 219
E + V A + G + N+F+ L+ + G + + KV G F
Sbjct: 216 EGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLA-SSKVLLGSFGGRDLVTWNTV 273
Query: 220 ------NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKT-C 272
N+ EAL + +M G +P+ FT + VL AC L+ +R K H ALK
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333
Query: 273 YEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFC 332
+ + +V AL+D+Y ++ + RR+F+ M + + W+ MIA Y+Q + +A+ LF
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393
Query: 333 RMRQ-AFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKC 391
M + A + N T V+ AC IH VV+ GL D FV N LMD+Y++
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453
Query: 392 GRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKM--LEEQV--------- 440
G+++ ++ +F + R+ VTWNTMI GYV A+++ KM LE +V
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513
Query: 441 PATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARL 500
+T ++L +CA+L+AL G ++H +K N DV V +AL+DMYAKCG + +R
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573
Query: 501 VFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGL 560
VFD + N ++WN +I Y MHG E + + +M +G +PN +TF+ V +ACS+ G+
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633
Query: 561 LEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQ-PSVMIWRAL 619
+++G F M +YG+EP +HY +V LLGRAG + +A +L+ +P W +L
Sbjct: 634 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSL 693
Query: 620 LGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS----------- 668
LGA IHNN+EIG ++AQ+++ EP + +VLL+NIY+ A W+KA
Sbjct: 694 LGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVR 753
Query: 669 KEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVRED 728
KEPG SWIE+ VH F AGD+SH + G LE L + RK GY+PD S VL +V ED
Sbjct: 754 KEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEED 813
Query: 729 EKERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDV 788
EKE L HSEKLA+AF + P + IR+ KNLR+C DCH A K ISKIV REII+RDV
Sbjct: 814 EKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDV 873
Query: 789 HRFHHFQDGCCSCGDFW 805
RFH F++G CSCGD+W
Sbjct: 874 RRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 494 bits (1273), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/649 (38%), Positives = 392/649 (60%), Gaps = 30/649 (4%)
Query: 186 LGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL----------------FNDCFEEALNF 229
LG + F+ T LI A S G + FAR+VFD L N+ F++AL
Sbjct: 47 LGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLM 106
Query: 230 FSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTK 289
+S M+ P++FTF +LKAC GL +++ + H + ++ D++V L+ LY K
Sbjct: 107 YSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAK 166
Query: 290 SGEISNARRIFE--EMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFV 347
+ +AR +FE +P++ ++ W+ +++ YAQ ++A+E+F +MR+ V P+ V
Sbjct: 167 CRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALV 226
Query: 348 SVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKR 407
SVL A ++ L G IH+ VV++GL + + +L +YAKCG++ + LF +
Sbjct: 227 SVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSP 286
Query: 408 NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVH 467
N + WN MI GY + G +A+ MF +M+ + V ++ +S + ACA + +LE ++
Sbjct: 287 NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMY 346
Query: 468 CLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSA 527
+++Y DV +++ALIDM+AKCGS+ ARLVFD D + V W+AMI GY +HG +
Sbjct: 347 EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAR 406
Query: 528 EVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM 587
E + ++ M++ G PN++TF+G+L AC++ G++ +G +F M A++ I P +HY +
Sbjct: 407 EAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQHYACV 465
Query: 588 VSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE 647
+ LLGRAGHLD+A ++I+ +P QP V +W ALL AC H +VE+G +AQ + +P +
Sbjct: 466 IDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNT 525
Query: 648 ATHVLLSNIYAMARSW-----------EKAASKEPGLSWIENQGMVHYFRAGDTSHADMN 696
+V LSN+YA AR W EK +K+ G SW+E +G + FR GD SH
Sbjct: 526 GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYE 585
Query: 697 IIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPSSPI 756
I +EW+ + ++ G++ + A L D+ ++E E L HSE++A+A+ L P +P+
Sbjct: 586 EIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPL 645
Query: 757 RIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
RI KNLR CV+CH A K+ISK+V REI++RD +RFHHF+DG CSCGD+W
Sbjct: 646 RITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 273/776 (35%), Positives = 416/776 (53%), Gaps = 31/776 (3%)
Query: 57 HSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDE 116
H A L+ C +L+ + + V K G + F L++++ + + +A ++F+
Sbjct: 38 HPAALLLERCSSLKELRQILPL---VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEP 94
Query: 117 MPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELC 176
+ + + + T ++G+ S +A+ F + + E + FT LKV +
Sbjct: 95 IDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVG 154
Query: 177 PCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL----------------FN 220
+ + K G + F T L + ++ C V ARKVFD + N
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQN 214
Query: 221 DCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVA 280
AL M KP+ T VL A L I V K HG A+++ ++ + ++
Sbjct: 215 GMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS 274
Query: 281 VALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVA 340
AL+D+Y K G + AR++F+ M +++V+ W+ MI Y Q + +A+ +F +M V
Sbjct: 275 TALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVK 334
Query: 341 PNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVEL 400
P + + L ACA + L+ G IH L V +GL +V V N+L+ +Y KC ++ + +
Sbjct: 335 PTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASM 394
Query: 401 FAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAAL 460
F + R V+WN MI+G+ Q G A+ FS+M V TY SV+ A A L+
Sbjct: 395 FGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSIT 454
Query: 461 EPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGY 520
+H + +++ D +V V AL+DMYAKCG+I ARL+FDMM++ + +WNAMI GY
Sbjct: 455 HHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGY 514
Query: 521 SMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC 580
HG L++F+ MQ+ +PN +TF+ V+SACS+ GL+E G F M NY IE
Sbjct: 515 GTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELS 574
Query: 581 IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHIL 640
++HY +MV LLGRAG L++A I +P +P+V ++ A+LGAC IH NV +A+ +
Sbjct: 575 MDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLF 634
Query: 641 DFEPEDEATHVLLSNIYAMARSWEKAAS-----------KEPGLSWIENQGMVHYFRAGD 689
+ P+D HVLL+NIY A WEK K PG S +E + VH F +G
Sbjct: 635 ELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGS 694
Query: 690 TSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFK 749
T+H D I LE L ++AGY+PD + VL V D KE+ L HSEKLA++F L
Sbjct: 695 TAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLN 753
Query: 750 MPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
+ I + KNLR+C DCH A K IS + REI++RD+ RFHHF++G CSCGD+W
Sbjct: 754 TTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 246/599 (41%), Positives = 373/599 (62%), Gaps = 16/599 (2%)
Query: 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYV 279
N +EAL +M +G + + +L ACL +R + H +KT Y Y+
Sbjct: 33 NGRLQEAL---LEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYL 89
Query: 280 AVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFV 339
LL Y K + +AR++ +EMP+K+V+ W+ MI+RY+QT S +A+ +F M ++
Sbjct: 90 RTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDG 149
Query: 340 APNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVE 399
PN+FTF +VL +C GL LG QIH L+V+ S +FV ++L+D+YAK G+++ + E
Sbjct: 150 KPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEARE 209
Query: 400 LFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAA 459
+F P+R+ V+ +I GY QLG +A+ MF ++ E + VTY+S+L A + LA
Sbjct: 210 IFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLAL 269
Query: 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISG 519
L+ G Q HC ++ V+ N+LIDMY+KCG+++ AR +FD M + +SWNAM+ G
Sbjct: 270 LDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVG 329
Query: 520 YSMHGLSAEVLKVFDLMQ-QRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVAN-YGI 577
YS HGL EVL++F LM+ ++ +P+ +T + VLS CS+G + + G F MVA YG
Sbjct: 330 YSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGT 389
Query: 578 EPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQ 637
+P EHY +V +LGRAG +D+A + I+ +P +P+ + +LLGAC +H +V+IG +
Sbjct: 390 KPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGR 449
Query: 638 HILDFEPEDEATHVLLSNIYAMARSW-----------EKAASKEPGLSWIENQGMVHYFR 686
+++ EPE+ +V+LSN+YA A W +KA +KEPG SWI+++ +HYF
Sbjct: 450 RLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFH 509
Query: 687 AGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFA 746
A D +H + ++ +++K ++AGY+PDLS VL DV E++KE+ L HSEKLAL F
Sbjct: 510 ANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFG 569
Query: 747 LFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
L PIR+ KNLRICVDCH KI SK+ +RE+ +RD +RFH DG CSCGD+W
Sbjct: 570 LIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 267/745 (35%), Positives = 404/745 (54%), Gaps = 32/745 (4%)
Query: 93 ATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREG 152
+TN +++ +VK + A LFD MP+R +++ + Y +S F EA LF + R
Sbjct: 81 STNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSS 140
Query: 153 HELNP--FAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVC----- 205
P FT L V A KLG D+N F+ + + S C
Sbjct: 141 SCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRL 200
Query: 206 --GCVEFAR------KVFDGLF-----NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKAC 252
CV F F+ L + + E+++ F +MR G +P++FTF+ VLKA
Sbjct: 201 DLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV 260
Query: 253 LGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWS 312
+GL + + H ++ T + D V +LD Y+K + R +F+EMP+ D + ++
Sbjct: 261 VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYN 320
Query: 313 FMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRV 372
+I+ Y+Q D ++ F M+ F F ++L A + L +G Q+H +
Sbjct: 321 VVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLA 380
Query: 373 GLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMF 432
S + V N+L+D+YAKC E + +F P+R V+W +I GYVQ G G + +F
Sbjct: 381 TADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLF 440
Query: 433 SKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKC 492
+KM + A + T+++VL+A AS A+L G Q+H +++ +V + L+DMYAKC
Sbjct: 441 TKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKC 500
Query: 493 GSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVL 552
GSI DA VF+ M D N VSWNA+IS ++ +G + F M + G +P++++ +GVL
Sbjct: 501 GSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVL 560
Query: 553 SACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPS 612
+ACS+ G +EQG YF++M YGI P +HY M+ LLGR G +A KL++ +PF+P
Sbjct: 561 TACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPD 620
Query: 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEP-EDEATHVLLSNIYAMARSWEK------ 665
++W ++L AC IH N + +A+ + E D A +V +SNIYA A WEK
Sbjct: 621 EIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKK 680
Query: 666 -----AASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSA 720
K P SW+E +H F + D +H + + I + L + + GY PD S+
Sbjct: 681 AMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSS 740
Query: 721 VLRDVREDEKERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQ 780
V++DV E K L HSE+LA+AFAL P PI ++KNLR C DCH AIK+ISKIV+
Sbjct: 741 VVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVK 800
Query: 781 REIIIRDVHRFHHFQDGCCSCGDFW 805
REI +RD RFHHF +G CSCGD+W
Sbjct: 801 REITVRDTSRFHHFSEGVCSCGDYW 825
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 479 bits (1233), Expect = e-134, Method: Compositional matrix adjust.
Identities = 273/797 (34%), Positives = 443/797 (55%), Gaps = 45/797 (5%)
Query: 51 VSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDA 110
+ +S ++++ L+SCI+ D + +H ++++ D N L+++Y K A
Sbjct: 57 IRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKA 116
Query: 111 TKLFDEM---PERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVL 167
+F+ M +R+ +S+ + Y + + ++A+ +F G N + +TA ++
Sbjct: 117 EDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRAC 176
Query: 168 VSMGWAELCPCVFACVYKLGH-DSNAFVGTALIDAFSVCG--CVEFARKVFDGL------ 218
+ + + + K GH +S+ VG +LID F V G E A KVFD +
Sbjct: 177 SNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMF-VKGENSFENAYKVFDKMSELNVV 235
Query: 219 -----FNDCFE-----EALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCA 268
C + EA+ FF M GF+ + FT + V AC L+ + + K H A
Sbjct: 236 TWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWA 295
Query: 269 LKTCYEMDLYVAVALLDLYTK---SGEISNARRIFEEMPKKDVIPWSFMIARYAQT-DLS 324
+++ D V +L+D+Y K G + + R++F+ M V+ W+ +I Y + +L+
Sbjct: 296 IRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLA 353
Query: 325 IDAVELFCRM-RQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNA 383
+A+ LF M Q V PN FTF S +AC + +G Q+ + GL S+ V+N+
Sbjct: 354 TEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANS 413
Query: 384 LMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPAT 443
++ ++ K RME++ F ++N V++NT + G + +A + S++ E ++ +
Sbjct: 414 VISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVS 473
Query: 444 EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503
T++S+L A++ ++ G Q+H VK + V NALI MY+KCGSI A VF+
Sbjct: 474 AFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFN 533
Query: 504 MMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQ 563
M + N +SW +MI+G++ HG + VL+ F+ M + G +PN +T+V +LSACS+ GL+ +
Sbjct: 534 FMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSE 593
Query: 564 GEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGAC 623
G +F SM ++ I+P +EHY MV LL RAG L A + I +PFQ V++WR LGAC
Sbjct: 594 GWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGAC 653
Query: 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS-----------KEPG 672
+H+N E+G+L+A+ IL+ +P + A ++ LSNIYA A WE++ KE G
Sbjct: 654 RVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGG 713
Query: 673 LSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDV----RED 728
SWIE +H F GDT+H + + I L+ L + ++ GY+PD VL + E
Sbjct: 714 CSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEA 773
Query: 729 EKERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDV 788
EKER L+ HSEK+A+AF L S P+R+ KNLR+C DCH A+K IS + REI++RD+
Sbjct: 774 EKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDL 833
Query: 789 HRFHHFQDGCCSCGDFW 805
+RFHHF+DG CSC D+W
Sbjct: 834 NRFHHFKDGKCSCNDYW 850
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 805 | ||||||
| 147819178 | 787 | hypothetical protein VITISV_018656 [Viti | 0.926 | 0.947 | 0.655 | 0.0 | |
| 224075493 | 820 | predicted protein [Populus trichocarpa] | 0.985 | 0.967 | 0.625 | 0.0 | |
| 357495039 | 811 | Pentatricopeptide repeat-containing prot | 0.937 | 0.930 | 0.620 | 0.0 | |
| 255543164 | 716 | pentatricopeptide repeat-containing prot | 0.855 | 0.962 | 0.663 | 0.0 | |
| 356521082 | 780 | PREDICTED: putative pentatricopeptide re | 0.932 | 0.962 | 0.618 | 0.0 | |
| 449468888 | 721 | PREDICTED: putative pentatricopeptide re | 0.860 | 0.961 | 0.636 | 0.0 | |
| 15240583 | 822 | pentatricopeptide repeat-containing prot | 0.932 | 0.913 | 0.556 | 0.0 | |
| 297807343 | 822 | pentatricopeptide repeat-containing prot | 0.954 | 0.934 | 0.547 | 0.0 | |
| 242092564 | 825 | hypothetical protein SORBIDRAFT_10g00852 | 0.962 | 0.939 | 0.494 | 0.0 | |
| 413944176 | 823 | putative pentatricopeptide repeat family | 0.971 | 0.950 | 0.490 | 0.0 |
| >gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/808 (65%), Positives = 626/808 (77%), Gaps = 62/808 (7%)
Query: 26 RGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKK 85
RG S Q+A TQ+ S SEFNSH+YA +LQ CIQ D+ +HC++LK+
Sbjct: 14 RGFSVQSAKLTQEFVGHV------SPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKR 67
Query: 86 GNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLF 145
G CLDLFA N+LLN+YVK + L DA+KLFDEMPERNTISFVT IQGY S +F+EA+ LF
Sbjct: 68 GGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELF 127
Query: 146 STLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVC 205
LHREGHELNPF FT LK+LVSM EL + AC++KLGH+SNAFVGTALIDA+SVC
Sbjct: 128 VRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVC 187
Query: 206 GCVEFARKVFDGLF----------------NDCFEEALNFFSQMRAVGFKPNNFTFAFVL 249
G V+ AR+VFDG+ NDCF+EAL FSQMR VGFKPNNFTFA V
Sbjct: 188 GRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVF 247
Query: 250 KACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVI 309
KACLGL+ V KS HGCALK+ YE+DLYV VALLDLYTKSG+I +AR FEE+PKKDVI
Sbjct: 248 KACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVI 307
Query: 310 PWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLV 369
PWSFMIARYAQ+D S +AVE+F +MRQA V PNQFTF SVLQACATMEGL+LGNQIH V
Sbjct: 308 PWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHV 367
Query: 370 VRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVT-WNTMIVGYVQLGEVGKA 428
+++GL SDVFVSNALMDVYAKCGRMENS+ LFAESP RN VT WNT+IVG+VQLG+ KA
Sbjct: 368 IKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKA 427
Query: 429 MIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDM 488
+ +F MLE +V ATEVTYSS LRACASLAALEPG+Q+H LTVK +D D+VV NALIDM
Sbjct: 428 LRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDM 487
Query: 489 YAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTF 548
YAKCGSI DARLVFD+MN +EVSWNAMISGYSMHGL
Sbjct: 488 YAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGL----------------------- 524
Query: 549 VGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP 608
AC+N GLL+QG+AYF SM+ ++GIEPCIEHYT MV LLGR GHLDKA KLI+ IP
Sbjct: 525 -----ACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIP 579
Query: 609 FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668
FQPSVM+WRALLGAC+IHN++E+GR+SAQH+L+ EP+D+ATHVLLSN+YA A+ W+ AS
Sbjct: 580 FQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVAS 639
Query: 669 -----------KEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPD 717
KEPGLSWIE+QG VH F GDTSH ++ +I GMLEWL+MK++KAGYIP+
Sbjct: 640 VRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPN 699
Query: 718 LSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISK 777
+ VL DV ++EKER LWVHSE+LAL+F + + P SPIRI+KNLRICVDCH AIK ISK
Sbjct: 700 YNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISK 759
Query: 778 IVQREIIIRDVHRFHHFQDGCCSCGDFW 805
+VQREI++RD++RFHHFQ+G CSCGD+W
Sbjct: 760 VVQREIVVRDINRFHHFQEGLCSCGDYW 787
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa] gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/832 (62%), Positives = 630/832 (75%), Gaps = 39/832 (4%)
Query: 1 MIRLFNYKTFSCKQLTHQSKINAWLRGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYA 60
MIRL K Q + K N L ++ ++ L+ Q+ S+S+ EFN++ Y
Sbjct: 1 MIRLLRSKLL---QHPNHCKSNTALCIITQRSFLA-QRTSHSSP--------EFNTYIYG 48
Query: 61 TSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPER 120
+ LQSCI+N D T +HC+++KKGNCLDLFA N+LLN YVK + LPDA KLFDEMP+R
Sbjct: 49 SLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDR 108
Query: 121 NTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVF 180
NT+SFVT IQGY+ +F EA+GLFS L EGHELNPF F+ LK+LVS WA+L V
Sbjct: 109 NTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVH 168
Query: 181 ACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLF----------------NDCFE 224
ACVYKLG DS+AFVGTALID +SVCG E AR+VFD + N+CFE
Sbjct: 169 ACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFE 228
Query: 225 EALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALL 284
E+L FS+MR VGFKPNNFTFA VLKAC+GL+ V K+ HGCA KT Y +L+V V L+
Sbjct: 229 ESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELI 288
Query: 285 DLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQF 344
DLY KSG++ +A ++FEEMPK DVIPWSFMIARYAQ++ S +A+E+FCRMR+ V PNQF
Sbjct: 289 DLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQF 348
Query: 345 TFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAES 404
T S+LQACA++ L LGNQIH VV+VGL +VFVSNALMD+YAKCGRMENS++LF+ES
Sbjct: 349 TLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSES 408
Query: 405 PKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGM 464
P V+WNT+IVGYVQ G KA+I+F MLE QV TEVTYSSVLRACA +AALEPG
Sbjct: 409 PNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGS 468
Query: 465 QVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHG 524
Q+H L+VK YD + VV NALIDMYAKCG+I DARLVFDM+ + ++VSWNAMISGYS+HG
Sbjct: 469 QIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHG 528
Query: 525 LSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHY 584
L E LK F+ M + +P+ +TFVG+LSACSN GLL++G+AYFKSMV Y IEPC EHY
Sbjct: 529 LYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHY 588
Query: 585 TSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644
T MV LLGR+GHLDKAAKL+ IPF+PSVM+WRALL AC+IHN+VE+GR+SAQ +L+ EP
Sbjct: 589 TCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEP 648
Query: 645 EDEATHVLLSNIYAMARSWEKAAS-----------KEPGLSWIENQGMVHYFRAGDTSHA 693
EDEATHVLLSNIYA AR W AS KEPGLSWIENQG VHYF GDTSH
Sbjct: 649 EDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHP 708
Query: 694 DMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPS 753
D +I GMLEWLNMK+R GY+PD S+VL DV + +KE+ LWVHSE+LALA+ L + P
Sbjct: 709 DTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSI 768
Query: 754 SPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
SP+RIIKNLRIC DCH AIK+ISKIVQR+IIIRD++RFHHF +G CSCGD+W
Sbjct: 769 SPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/783 (62%), Positives = 593/783 (75%), Gaps = 28/783 (3%)
Query: 51 VSEFNSHSYATSLQSCIQND-DLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPD 109
+S +SHSYA LQ I+N D +HC +LK+G LDLFA N+LLN YV+ N L D
Sbjct: 29 LSALDSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQD 88
Query: 110 ATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVS 169
A+KLFDEMP+ NTISFVT QGY+ QF +A+ + +EGHE+NPF FT LK+LVS
Sbjct: 89 ASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVS 148
Query: 170 MGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL----------- 218
M A LC + ACVYKLGH ++AFVGTALIDA+SV G V+ AR VFD +
Sbjct: 149 MDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGM 208
Query: 219 ----FNDCF-EEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCY 273
+CF EE+L F+QMR +G+KPNNFT + LK+CLGL+ V KS HGCALK CY
Sbjct: 209 VACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCY 268
Query: 274 EMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCR 333
+ DL+V +ALL+LY KSGEI +A+R+FEEMPK D+IPWS MIARYAQ+D S +A++LF R
Sbjct: 269 DHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLR 328
Query: 334 MRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGR 393
MRQ V PN FTF SVLQACA+ LDLG QIHS V++ GL S+VFVSNA+MDVYAKCG
Sbjct: 329 MRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGE 388
Query: 394 MENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRA 453
+ENS++LF E P RN VTWNT+IVGYVQLG+ +AM +F+ MLE + TEVTYSSVLRA
Sbjct: 389 IENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRA 448
Query: 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSW 513
ASLAALEPG+Q+H LT+K Y+ D VVAN+LIDMYAKCG I DARL FD MN +EVSW
Sbjct: 449 SASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSW 508
Query: 514 NAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573
NAMI GYSMHG+S E L +FD+MQ +PN LTFVGVLSACSN GLL +G+A+F+SM
Sbjct: 509 NAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSK 568
Query: 574 NYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGR 633
+Y I+PCIEHYT MV LLGR G D+A KLI I +QPSVM+WRALLGAC+IH V++GR
Sbjct: 569 DYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGR 628
Query: 634 LSAQHILDFEPEDEATHVLLSNIYAMARSWE-----------KAASKEPGLSWIENQGMV 682
+ AQH+L+ EP D+ATHVLLSN+YA A W+ K KEPGLSW+ENQG+V
Sbjct: 629 VCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVV 688
Query: 683 HYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLA 742
HYF GDTSH D+ +I MLEWLN K+R AGY+PD +AVL DV++DEKER+LWVHSE+LA
Sbjct: 689 HYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLA 748
Query: 743 LAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCG 802
LA+ L + P S IRIIKNLRIC+DCHT +K+ISK+VQREI+IRD++RFHHF+ G CSCG
Sbjct: 749 LAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCG 808
Query: 803 DFW 805
D+W
Sbjct: 809 DYW 811
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/716 (66%), Positives = 566/716 (79%), Gaps = 27/716 (3%)
Query: 117 MPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELC 176
MP+RNT+SFVT IQGY S Q E V LFS +HREGHELNPF FT LK+LVS+ AEL
Sbjct: 1 MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60
Query: 177 PCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLF----------------N 220
+ AC+YKLGH+SNAFVGTALIDA++VCG V AR+ FD + N
Sbjct: 61 YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120
Query: 221 DCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVA 280
D F+++L F++MR VGF PN+FTFA VLKAC+GL+ V KS HGC LKTCYEMDLYV
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180
Query: 281 VALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVA 340
V LLDLYTK G+ ++ R+FEEMPK DVIPWSFMI+RYAQ++ S +AVELF +MR+AFV
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240
Query: 341 PNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVEL 400
PNQFTF SVLQ+CA++E L LG Q+H V++VGL +VFVSNALMDVYAKCGR++NS++L
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300
Query: 401 FAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAAL 460
F E P RN VTWNTMIVGYVQ G+ KA+ ++ MLE QV A+EVTYSSVLRACASLAA+
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAM 360
Query: 461 EPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGY 520
E G Q+H L++K YD DVVV NALIDMYAKCGSI +ARLVFDM+++ +E+SWNAMISGY
Sbjct: 361 ELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGY 420
Query: 521 SMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC 580
SMHGL E LK F +MQ+ PN LTFV +LSACSN GLL+ G+ YFKSMV +YGIEPC
Sbjct: 421 SMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPC 480
Query: 581 IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHIL 640
+EHYT MV LLGR+GHLDKA KLIE IP +P+V +WRALLGAC+IHN+V++G +SAQ IL
Sbjct: 481 MEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQIL 540
Query: 641 DFEPEDEATHVLLSNIYAMARSWEKAAS-----------KEPGLSWIENQGMVHYFRAGD 689
+P+DEATHVLLSNIYA R W AS KEPGLSWIENQG+VHYF GD
Sbjct: 541 QIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGD 600
Query: 690 TSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFK 749
TSH DM +I GMLEWLNMK+ KAGY+PDL+AVLRDV +DEK+R+LWVHSE+LALAF L +
Sbjct: 601 TSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIR 660
Query: 750 MPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
P IRI+KNLRIC DCH+AIK+ISKIVQR+IIIRD++RFHHFQDG CSCGD+W
Sbjct: 661 TPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/779 (61%), Positives = 590/779 (75%), Gaps = 28/779 (3%)
Query: 55 NSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLF 114
+SHSYA LQ I+N D ++HC +LK G LDLFA N+LLN YV L DA+KLF
Sbjct: 2 DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61
Query: 115 DEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAE 174
DEMP NT+SFVT QG++ S QF A L L REG+E+N F FT LK+LVSM A+
Sbjct: 62 DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121
Query: 175 LCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLF--------------- 219
C V A VYKLGH ++AFVGTALIDA+SVCG V+ AR+VFDG++
Sbjct: 122 TCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYA 181
Query: 220 -NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLY 278
N C E++L F QMR +G++PNNFT + LK+C GL+ +V KS HGCALK CY+ DLY
Sbjct: 182 ENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLY 241
Query: 279 VAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQA- 337
V +ALL+LYTKSGEI+ A++ FEEMPK D+IPWS MI+RYAQ+D S +A+ELFCRMRQ+
Sbjct: 242 VGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSS 301
Query: 338 FVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENS 397
V PN FTF SVLQACA++ L+LGNQIHS V++VGL S+VFVSNALMDVYAKCG +ENS
Sbjct: 302 VVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENS 361
Query: 398 VELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASL 457
V+LF S ++N V WNT+IVGYVQLG+ KA+ +FS ML + TEVTYSSVLRA ASL
Sbjct: 362 VKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASL 421
Query: 458 AALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMI 517
ALEPG Q+H LT+K Y+ D VVAN+LIDMYAKCG I DARL FD M+ +EVSWNA+I
Sbjct: 422 VALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALI 481
Query: 518 SGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI 577
GYS+HGL E L +FD+MQQ +PN LTFVGVLSACSN GLL++G A+FKSM+ +YGI
Sbjct: 482 CGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGI 541
Query: 578 EPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQ 637
EPCIEHYT MV LLGR+G D+A KLI IPFQPSVM+WRALLGAC+IH N+++G++ AQ
Sbjct: 542 EPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQ 601
Query: 638 HILDFEPEDEATHVLLSNIYAMARSWEKAA-----------SKEPGLSWIENQGMVHYFR 686
+L+ EP+D+ATHVLLSN+YA A+ W+ A KEPGLSW+ENQG+VHYF
Sbjct: 602 RVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFT 661
Query: 687 AGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFA 746
GDTSH ++ +I MLEWL K+R AGY+PD S VL DV +DEKER LW+HSE+LALAF
Sbjct: 662 VGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFG 721
Query: 747 LFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
L ++P IRIIKNLRICVDCH IK++SKIVQREI+IRD++RFHHF+ G CSCGD+W
Sbjct: 722 LIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial-like [Cucumis sativus] gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/720 (63%), Positives = 547/720 (75%), Gaps = 27/720 (3%)
Query: 113 LFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGW 172
+FDEMPERNT+SFVT I GY S++F+EA LF+ LH EGHELNPF FT LK+LVSM W
Sbjct: 2 VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61
Query: 173 AELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFD-----------GLF-- 219
AEL V CV K+G+ SN F+GTALIDA+SV GCV AR+VFD G+
Sbjct: 62 AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121
Query: 220 ---NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMD 276
NDCF EAL FFSQMR GFKPNNFTFA VLKACLGL K+ H LKT YE D
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181
Query: 277 LYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQ 336
LYV V LL+LYT+ G+ +A R F +MPK DVIPWSFMI+R+AQ+ S A+E+FC+MR+
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241
Query: 337 AFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMEN 396
AFV PNQFTF SVLQA A +E LDL IH ++ GL +DVFVSNALM YAKCG +E
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301
Query: 397 SVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACAS 456
S+ELF RN V+WNT+IV YVQLG+ +A+ +FS ML QV ATEVTYSS+LRACA+
Sbjct: 302 SMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACAT 361
Query: 457 LAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAM 516
LAALE G+QVHCLT K Y DV V NALIDMYAKCGSI DAR +FDM++ ++VSWNA+
Sbjct: 362 LAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAI 421
Query: 517 ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYG 576
I GYSMHGL E +K+F+LM++ +P+ LTFVGVLSACSN G L++G+ YF SM +YG
Sbjct: 422 ICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYG 481
Query: 577 IEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSA 636
IEPC+EHYT MV L+GR+G+LD+A K IE IPF+PSVMIWRALLGAC+IHN+VE+GR+SA
Sbjct: 482 IEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISA 541
Query: 637 QHILDFEPEDEATHVLLSNIYAMARSW-----------EKAASKEPGLSWIENQGMVHYF 685
Q +L+ EP DEA+HVLLSNIYA AR W K KEPGLSWIENQG VH F
Sbjct: 542 QRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCF 601
Query: 686 RAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAF 745
DTSHAD+ +I GMLE+LNMK+RKAGY P L+AVL DV +DEKER LW+HSE+LALAF
Sbjct: 602 TVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAF 661
Query: 746 ALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
L +MP PIRIIKNLRICVDCH+ IK+ISKIV R+II+RD++RFHHF++G CSC D+W
Sbjct: 662 GLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial; Flags: Precursor gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana] gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/783 (55%), Positives = 557/783 (71%), Gaps = 32/783 (4%)
Query: 51 VSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDA 110
+ +SH+Y L+ CIQ +D +A IHC +LKKG+CLDLFATN+LLN YVK DA
Sbjct: 44 IPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDA 103
Query: 111 TKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSM 170
LFDEMPERN +SFVT QGY + +GL+S LHREGHELNP FT+FLK+ VS+
Sbjct: 104 LNLFDEMPERNNVSFVTLAQGYACQ----DPIGLYSRLHREGHELNPHVFTSFLKLFVSL 159
Query: 171 GWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLF----------- 219
AE+CP + + + KLG+DSNAFVG ALI+A+SVCG V+ AR VF+G+
Sbjct: 160 DKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIV 219
Query: 220 -----NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYE 274
N FE++L S MR GF PNN+TF LKA +GL AK HG LKTCY
Sbjct: 220 SCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYV 279
Query: 275 MDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRM 334
+D V V LL LYT+ G++S+A ++F EMPK DV+PWSFMIAR+ Q +AV+LF RM
Sbjct: 280 LDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRM 339
Query: 335 RQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRM 394
R+AFV PN+FT S+L CA + LG Q+H LVV+VG D++VSNAL+DVYAKC +M
Sbjct: 340 REAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKM 399
Query: 395 ENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRAC 454
+ +V+LFAE +N V+WNT+IVGY LGE GKA MF + L QV TEVT+SS L AC
Sbjct: 400 DTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGAC 459
Query: 455 ASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWN 514
ASLA+++ G+QVH L +K N V V+N+LIDMYAKCG I A+ VF+ M + SWN
Sbjct: 460 ASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWN 519
Query: 515 AMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVAN 574
A+ISGYS HGL + L++ D+M+ R +PN LTF+GVLS CSN GL++QG+ F+SM+ +
Sbjct: 520 ALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRD 579
Query: 575 YGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRL 634
+GIEPC+EHYT MV LLGR+G LDKA KLIEGIP++PSVMIWRA+L A + NN E R
Sbjct: 580 HGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARR 639
Query: 635 SAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS-----------KEPGLSWIENQGMVH 683
SA+ IL P+DEAT+VL+SN+YA A+ W AS KEPGLSWIE+QG VH
Sbjct: 640 SAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVH 699
Query: 684 YFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLAL 743
YF G + H DM +I GMLEWLNMK+ +AGY+PD +AVL D+ ++EK++ LWVHSE+LAL
Sbjct: 700 YFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLAL 759
Query: 744 AFALFKMPPS-SPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCG 802
A+ L +MP S + I I+KNLRIC DCH+A+K+IS IVQR+++IRD++RFHHF G CSCG
Sbjct: 760 AYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCG 819
Query: 803 DFW 805
D W
Sbjct: 820 DHW 822
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/807 (54%), Positives = 565/807 (70%), Gaps = 39/807 (4%)
Query: 27 GLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKG 86
G S Q A S+ Q S+S V +SH+Y T L+ CI+ +D +A IHC +LKKG
Sbjct: 27 GFSVQTAESSVQWSDSV-------VPCLDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKG 79
Query: 87 NCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFS 146
+CLDLFATN+LLN YVK DA LFDEMPERN +S+VT QGY + VGL+S
Sbjct: 80 SCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYACQ----DPVGLYS 135
Query: 147 TLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCG 206
LHREGHELNP FT+FLK+ VS+ AE+C + + + KLG+DSNAFVG ALI+A+SVCG
Sbjct: 136 RLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCG 195
Query: 207 CVEFARKVFDGLF----------------NDCFEEALNFFSQMRAVGFKPNNFTFAFVLK 250
V+ AR VF+G+ N CFE++L S+M GF PNN+TF LK
Sbjct: 196 SVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALK 255
Query: 251 ACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIP 310
A +GL AKS HG LKTCYE+D V V LL LYT+ G++S+A ++F EMPK DV+P
Sbjct: 256 ASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVP 315
Query: 311 WSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVV 370
WSFMIAR+ Q AV++F RMR+ FV PN+FT S+L CA + LG Q+H LVV
Sbjct: 316 WSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVV 375
Query: 371 RVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMI 430
+VG DV+VSNAL+DVYAKC +M+ +V+LFAE +N V+WNT+IVGY LGE GKA+
Sbjct: 376 KVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALN 435
Query: 431 MFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYA 490
MF + L QV TEVT+SS L ACASLA++E G+QVH L +K N V V+N+LIDMYA
Sbjct: 436 MFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYA 495
Query: 491 KCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVG 550
KCG I A+ VF+ M + SWNA+ISGYS HGL + L++FD+M+ +PN LTF+G
Sbjct: 496 KCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLG 555
Query: 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQ 610
VLS CSN GL++QG+ F+SM+ ++GIEPC+EHYT MV L GR+G LDKA LIEGIP++
Sbjct: 556 VLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYE 615
Query: 611 PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSW------- 663
PSVMIWRA+L A + N E R SA+ IL P+DEAT+VLLSN+YA A+ W
Sbjct: 616 PSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANVASIR 675
Query: 664 ----EKAASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLS 719
EK KEPGLSWIE+QG VH+F G + H DM +I GMLEWLNMK+ +AGY+PD +
Sbjct: 676 KSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGYVPDRN 735
Query: 720 AVLRDVREDEKERYLWVHSEKLALAFALFKMPPS-SPIRIIKNLRICVDCHTAIKIISKI 778
AVL D+ ++EK++ LWVHSE+LALA+ L +MP S + I I+KNLRIC DCH+A+K+IS I
Sbjct: 736 AVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSI 795
Query: 779 VQREIIIRDVHRFHHFQDGCCSCGDFW 805
VQR+++IRD++RFHHF G CSC D W
Sbjct: 796 VQRDLVIRDMNRFHHFHAGVCSCDDHW 822
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor] gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/809 (49%), Positives = 538/809 (66%), Gaps = 34/809 (4%)
Query: 26 RGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKK 85
R L+A AAL Q + + ++ + +S++ A LQ CI D + +H +V+++
Sbjct: 22 RNLAANAAL--QWLDDELAS---LALPKLDSYACARLLQRCIARGDARAGRAVHARVVQR 76
Query: 86 GNC--LDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVG 143
G LD F NVLLN+Y KL L A +LFD MPERN +SFVT +QGY + F EA G
Sbjct: 77 GGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAG 136
Query: 144 LFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFS 203
LF L REGHE+N F T LKVLV+M L C+ AC KLGHD NAFVG++LIDA+S
Sbjct: 137 LFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYS 196
Query: 204 VCGCVEFARKVFDGLF----------------NDCFEEALNFFSQMRAVGFKPNNFTFAF 247
+CG V AR VFDG+ ND E+ALN FS+MR G KPN F
Sbjct: 197 LCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTS 256
Query: 248 VLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKD 307
VLKA + L + + K HGCA+KT + + +V ALLD+Y K G I +AR +FE +P D
Sbjct: 257 VLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDD 316
Query: 308 VIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHS 367
VI WSF+I+RYAQ+ + A E+F RM ++ V PN+F+ VLQACA + LDLG QIH+
Sbjct: 317 VILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHN 376
Query: 368 LVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGK 427
LV+++G S++FV NALMDVYAKC MENS+E+F N V+WNT+IVGY Q G
Sbjct: 377 LVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAED 436
Query: 428 AMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALID 487
A+ +F +M V +T+VT+SSVLRACA+ A+++ +Q+H L K+ ++ D +V N+LID
Sbjct: 437 ALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLID 496
Query: 488 MYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT 547
YAKCG I DA VF+ + + VSWNA+ISGY++HG + + L++F+ M + +PN++T
Sbjct: 497 TYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVT 556
Query: 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607
FV +LS C + GL+ QG + F SM ++ I+P ++HYT +V LLGRAG L+ A K I I
Sbjct: 557 FVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDI 616
Query: 608 PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667
P PS M+WRALL +C++H NV +G+ SA+ +L+ EP+DE T+VLLSN+YA A ++ A
Sbjct: 617 PSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVA 676
Query: 668 -----------SKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIP 716
KE GLSW+E +G VH F G H DM II MLEWLN+K+ + GY+P
Sbjct: 677 LLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYVP 736
Query: 717 DLSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIIS 776
D++ VL DV E+EK R LWVHSE+LALA+ L PP PIRI+KNLR C+DCHT K+IS
Sbjct: 737 DINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTVFKVIS 796
Query: 777 KIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
KIVQREI++RD++RFHHF +G CSCGD+W
Sbjct: 797 KIVQREIVVRDINRFHHFDEGICSCGDYW 825
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/817 (49%), Positives = 539/817 (65%), Gaps = 35/817 (4%)
Query: 19 SKINAWL-RGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMT 77
S+IN L R L+A AL Q + + ++ + +S++ A LQ CI D +
Sbjct: 12 SQINGLLSRNLAANEAL--QWLDDELAS---LALPKLDSYACARFLQRCIARGDARAGRA 66
Query: 78 IHCQVLKKGNC--LDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVS 135
+H +V+++G LD F NVLLN Y KL L A +LFD MPERN +SFVT +QGY +
Sbjct: 67 VHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALR 126
Query: 136 SQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVG 195
+F EA+ LF L REGHE+N F T LKVLV+M L + AC KLGHD NAFVG
Sbjct: 127 GEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVG 186
Query: 196 TALIDAFSVCGCVEFARKVFDGLF----------------NDCFEEALNFFSQMRAVGFK 239
TALIDA+S+CG V AR VFDG+ ND E ALN FS+MR GFK
Sbjct: 187 TALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFK 246
Query: 240 PNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRI 299
PN F LKA + L + + K HGC++KT Y+ + +V ALLD+Y K G+I +A I
Sbjct: 247 PNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAI 306
Query: 300 FEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGL 359
FE +P DVI WSF+I+RYAQ+ + A E+F RM ++FV PN+F+ VLQACA + L
Sbjct: 307 FEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFL 366
Query: 360 DLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGY 419
+LG QIH+L +++G S++FV NALMD+YAKC MENS+E+F+ N V+WNT+IVGY
Sbjct: 367 ELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGY 426
Query: 420 VQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDV 479
Q G A+ +F +M + +T+VT+SSVLRACA+ ++++ +Q+H L K+ ++ D
Sbjct: 427 CQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDT 486
Query: 480 VVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQR 539
+V N+LID YAKCG I DA VF+ + + + VSWN++IS Y++HG + L++FD M +
Sbjct: 487 IVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKS 546
Query: 540 GWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDK 599
+ N++TFV +LS C + GL+ QG F SM+ ++ I+P +EHYT +V LLGRAG L
Sbjct: 547 DIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTD 606
Query: 600 AAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659
A K I IP PS M+WRALL +C++H NV +GR +A+ +LD EP DE T+VLLSN+YA
Sbjct: 607 ALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAA 666
Query: 660 A------RSWEKA-----ASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMK 708
A W K+ KE GLSW+E +G VH F G H DM II MLEWLN+K
Sbjct: 667 AGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLK 726
Query: 709 SRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDC 768
+ + GY+PD++ VL DV E+EK R LWVHSE+LALA+ L PP PIRI+KNLR C+DC
Sbjct: 727 ASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDC 786
Query: 769 HTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
HT K+ISKIVQREII+RD++RFHHF++G CSCGD+W
Sbjct: 787 HTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 805 | ||||||
| TAIR|locus:2183931 | 822 | AT5G13230 [Arabidopsis thalian | 0.927 | 0.908 | 0.559 | 2.8e-233 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.929 | 0.703 | 0.355 | 8e-140 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.899 | 0.834 | 0.382 | 1e-132 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.847 | 0.685 | 0.397 | 2.9e-126 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.925 | 0.920 | 0.351 | 5.5e-125 | |
| TAIR|locus:2091546 | 628 | AT3G13770 [Arabidopsis thalian | 0.724 | 0.928 | 0.410 | 1e-123 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.726 | 0.709 | 0.389 | 3.1e-123 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.720 | 0.618 | 0.375 | 2.8e-120 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.709 | 0.588 | 0.379 | 5.9e-120 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.648 | 0.614 | 0.403 | 1.8e-118 |
| TAIR|locus:2183931 AT5G13230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2250 (797.1 bits), Expect = 2.8e-233, P = 2.8e-233
Identities = 436/779 (55%), Positives = 556/779 (71%)
Query: 55 NSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLF 114
+SH+Y L+ CIQ +D +A IHC +LKKG+CLDLFATN+LLN YVK DA LF
Sbjct: 48 DSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107
Query: 115 DEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAE 174
DEMPERN +SFVT QGY + +GL+S LHREGHELNP FT+FLK+ VS+ AE
Sbjct: 108 DEMPERNNVSFVTLAQGYACQ----DPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAE 163
Query: 175 LCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLF--------------- 219
+CP + + + KLG+DSNAFVG ALI+A+SVCG V+ AR VF+G+
Sbjct: 164 ICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYV 223
Query: 220 -NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLY 278
N FE++L S MR GF PNN+TF LKA +GL AK HG LKTCY +D
Sbjct: 224 ENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPR 283
Query: 279 VAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAF 338
V V LL LYT+ G++S+A ++F EMPK DV+PWSFMIAR+ Q +AV+LF RMR+AF
Sbjct: 284 VGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAF 343
Query: 339 VAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSV 398
V PN+FT S+L CA + LG Q+H LVV+VG D++VSNAL+DVYAKC +M+ +V
Sbjct: 344 VVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAV 403
Query: 399 ELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLA 458
+LFAE +N V+WNT+IVGY LGE GKA MF + L QV TEVT+SS L ACASLA
Sbjct: 404 KLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLA 463
Query: 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMIS 518
+++ G+QVH L +K N V V+N+LIDMYAKCG I A+ VF+ M + SWNA+IS
Sbjct: 464 SMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALIS 523
Query: 519 GYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIE 578
GYS HGL + L++ D+M+ R +PN LTF+GVLS CSN GL++QG+ F+SM+ ++GIE
Sbjct: 524 GYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIE 583
Query: 579 PCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQH 638
PC+EHYT MV LLGR+G LDKA KLIEGIP++PSVMIWRA+L A + NN E R SA+
Sbjct: 584 PCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEE 643
Query: 639 ILDFEPEDEATHVLLSNIYAMARSWEKAAS-----------KEPGLSWIENQGMVHYFRA 687
IL P+DEAT+VL+SN+YA A+ W AS KEPGLSWIE+QG VHYF
Sbjct: 644 ILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSV 703
Query: 688 GDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFAL 747
G + H DM +I GMLEWLNMK+ +AGY+PD +AVL D+ ++EK++ LWVHSE+LALA+ L
Sbjct: 704 GLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGL 763
Query: 748 FKMPPS-SPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
+MP S + I I+KNLRIC DCH+A+K+IS IVQR+++IRD++RFHHF G CSCGD W
Sbjct: 764 VRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
Identities = 276/777 (35%), Positives = 440/777 (56%)
Query: 57 HSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDE 116
+++++ L +C + + L+ +H VLK G D + N L+++Y L L A +F
Sbjct: 289 YAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSN 348
Query: 117 MPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELC 176
M +R+ +++ T I G + +A+ LF +H +G E + + + + G
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 408
Query: 177 PCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVF-----------------DGLF 219
+ A KLG SN + AL++ ++ C +E A F GL
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 468
Query: 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYV 279
+D + F QM+ PN +T+ +LK C+ L + + + H +KT ++++ YV
Sbjct: 469 DD-LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYV 527
Query: 280 AVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFV 339
L+D+Y K G++ A I KDV+ W+ MIA Y Q + A+ F +M +
Sbjct: 528 CSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI 587
Query: 340 APNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVE 399
++ + + ACA ++ L G QIH+ G SD+ NAL+ +Y++CG++E S
Sbjct: 588 RSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYL 647
Query: 400 LFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAA 459
F ++ +++ WN ++ G+ Q G +A+ +F +M E + T+ S ++A + A
Sbjct: 648 AFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETAN 707
Query: 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISG 519
++ G QVH + K YD + V NALI MYAKCGSI+DA F ++ NEVSWNA+I+
Sbjct: 708 MKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINA 767
Query: 520 YSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP 579
YS HG +E L FD M RPN++T VGVLSACS+ GL+++G AYF+SM + YG+ P
Sbjct: 768 YSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSP 827
Query: 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHI 639
EHY +V +L RAG L +A + I+ +P +P ++WR LL AC++H N+EIG +A H+
Sbjct: 828 KPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHL 887
Query: 640 LDFEPEDEATHVLLSNIYAMARSW-----------EKAASKEPGLSWIENQGMVHYFRAG 688
L+ EPED AT+VLLSN+YA+++ W EK KEPG SWIE + +H F G
Sbjct: 888 LELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVG 947
Query: 689 DTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALF 748
D +H + I + L ++ + GY+ D ++L +++ ++K+ +++HSEKLA++F L
Sbjct: 948 DQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLL 1007
Query: 749 KMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
+P + PI ++KNLR+C DCH IK +SK+ REII+RD +RFHHF+ G CSC D+W
Sbjct: 1008 SLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
Identities = 290/758 (38%), Positives = 426/758 (56%)
Query: 78 IHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQ 137
+HCQ +K G D+ L++ Y+K + D K+FDEM ERN +++ T I GY +S
Sbjct: 115 LHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSM 174
Query: 138 FVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTA 197
E + LF + EG + N F F A L VL G V V K G D V +
Sbjct: 175 NDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNS 234
Query: 198 LIDAFSVCGCVEFARKVFDGL-------FNDCFE---------EALNFFSQMRAVGFKPN 241
LI+ + CG V AR +FD +N EAL F MR + +
Sbjct: 235 LINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLS 294
Query: 242 NFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFE 301
+FA V+K C L +R + H +K + D + AL+ Y+K + +A R+F+
Sbjct: 295 ESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFK 354
Query: 302 EMP-KKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLD 360
E+ +V+ W+ MI+ + Q D +AV+LF M++ V PN+FT+ +L A +
Sbjct: 355 EIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP-- 412
Query: 361 LGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYV 420
+++H+ VV+ V AL+D Y K G++E + ++F+ ++ V W+ M+ GY
Sbjct: 413 --SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYA 470
Query: 421 QLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASL-AALEPGMQVHCLTVKANYDMDV 479
Q GE A+ MF ++ + + E T+SS+L CA+ A++ G Q H +K+ D +
Sbjct: 471 QTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSL 530
Query: 480 VVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQR 539
V++AL+ MYAK G+I A VF + + VSWN+MISGY+ HG + + L VF M++R
Sbjct: 531 CVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 590
Query: 540 GWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDK 599
+ + +TF+GV +AC++ GL+E+GE YF MV + I P EH + MV L RAG L+K
Sbjct: 591 KVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 650
Query: 600 AAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659
A K+IE +P IWR +L AC +H E+GRL+A+ I+ +PED A +VLLSN+YA
Sbjct: 651 AMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAE 710
Query: 660 ARSWEKAAS-----------KEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMK 708
+ W++ A KEPG SWIE + + F AGD SH + I LE L+ +
Sbjct: 711 SGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTR 770
Query: 709 SRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDC 768
+ GY PD S VL+D+ ++ KE L HSE+LA+AF L P SP+ IIKNLR+C DC
Sbjct: 771 LKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDC 830
Query: 769 HTAIKIISKIVQREIIIRDVHRFHHFQ-DGCCSCGDFW 805
H IK+I+KI +REI++RD +RFHHF DG CSCGDFW
Sbjct: 831 HLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 286/719 (39%), Positives = 416/719 (57%)
Query: 109 DATKLFDEMPERNTIS---FVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLK 165
+ATKLF +M +S +V + + S E VGL GH + T +
Sbjct: 292 EATKLFMDMNSMIDVSPESYVILLSSFPEYS-LAEEVGLKKGREVHGHVIT----TGLVD 346
Query: 166 VLVSMGWAELCPCVFACVYKLGHDSNAF-VGTALIDAFSVCGCVEFARKVFDGLF-NDCF 223
+V +G + ++A K G ++A V + D SV + GL N CF
Sbjct: 347 FMVGIGNGLVN--MYA---KCGSIADARRVFYFMTDKDSVSW-----NSMITGLDQNGCF 396
Query: 224 EEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVAL 283
EA+ + MR P +FT L +C L ++ + HG +LK ++++ V+ AL
Sbjct: 397 IEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNAL 456
Query: 284 LDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSI-DAVELFCRMRQAFVAPN 342
+ LY ++G ++ R+IF MP+ D + W+ +I A+++ S+ +AV F ++A N
Sbjct: 457 MTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLN 516
Query: 343 QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFA 402
+ TF SVL A +++ +LG QIH L ++ + + NAL+ Y KCG M+ ++F+
Sbjct: 517 RITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFS 576
Query: 403 E-SPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALE 461
+ +R++VTWN+MI GY+ + KA+ + ML+ Y++VL A AS+A LE
Sbjct: 577 RMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLE 636
Query: 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYS 521
GM+VH +V+A + DVVV +AL+DMY+KCG + A F+ M N SWN+MISGY+
Sbjct: 637 RGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYA 696
Query: 522 MHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC 580
HG E LK+F+ M+ G P +++TFVGVLSACS+ GLLE+G +F+SM +YG+ P
Sbjct: 697 RHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPR 756
Query: 581 IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNN--VEIGRLSAQH 638
IEH++ M +LGRAG LDK IE +P +P+V+IWR +LGAC N E+G+ +A+
Sbjct: 757 IEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEM 816
Query: 639 ILDFEPEDEATHVLLSNIYAMARSWE---KA--------ASKEPGLSWIENQGMVHYFRA 687
+ EPE+ +VLL N+YA WE KA KE G SW+ + VH F A
Sbjct: 817 LFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVA 876
Query: 688 GDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFAL 747
GD SH D ++I L+ LN K R AGY+P L D+ ++ KE L HSEKLA+AF L
Sbjct: 877 GDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVL 936
Query: 748 FKMPPSS-PIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
S+ PIRI+KNLR+C DCH+A K ISKI R+II+RD +RFHHFQDG CSC DFW
Sbjct: 937 AAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1228 (437.3 bits), Expect = 5.5e-125, P = 5.5e-125
Identities = 273/776 (35%), Positives = 416/776 (53%)
Query: 57 HSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDE 116
H A L+ C +L+ + + V K G + F L++++ + + +A ++F+
Sbjct: 38 HPAALLLERCSSLKELRQILPL---VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEP 94
Query: 117 MPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELC 176
+ + + + T ++G+ S +A+ F + + E + FT LKV +
Sbjct: 95 IDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVG 154
Query: 177 PCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL----------------FN 220
+ + K G + F T L + ++ C V ARKVFD + N
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQN 214
Query: 221 DCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVA 280
AL M KP+ T VL A L I V K HG A+++ ++ + ++
Sbjct: 215 GMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS 274
Query: 281 VALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVA 340
AL+D+Y K G + AR++F+ M +++V+ W+ MI Y Q + +A+ +F +M V
Sbjct: 275 TALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVK 334
Query: 341 PNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVEL 400
P + + L ACA + L+ G IH L V +GL +V V N+L+ +Y KC ++ + +
Sbjct: 335 PTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASM 394
Query: 401 FAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAAL 460
F + R V+WN MI+G+ Q G A+ FS+M V TY SV+ A A L+
Sbjct: 395 FGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSIT 454
Query: 461 EPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGY 520
+H + +++ D +V V AL+DMYAKCG+I ARL+FDMM++ + +WNAMI GY
Sbjct: 455 HHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGY 514
Query: 521 SMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC 580
HG L++F+ MQ+ +PN +TF+ V+SACS+ GL+E G F M NY IE
Sbjct: 515 GTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELS 574
Query: 581 IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHIL 640
++HY +MV LLGRAG L++A I +P +P+V ++ A+LGAC IH NV +A+ +
Sbjct: 575 MDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLF 634
Query: 641 DFEPEDEATHVLLSNIYAMARSWEKAAS-----------KEPGLSWIENQGMVHYFRAGD 689
+ P+D HVLL+NIY A WEK K PG S +E + VH F +G
Sbjct: 635 ELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGS 694
Query: 690 TSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFK 749
T+H D I LE L ++AGY+PD + VL V D KE+ L HSEKLA++F L
Sbjct: 695 TAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLN 753
Query: 750 MPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
+ I + KNLR+C DCH A K IS + REI++RD+ RFHHF++G CSCGD+W
Sbjct: 754 TTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
Identities = 246/599 (41%), Positives = 373/599 (62%)
Query: 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYV 279
N +EAL +M +G + + +L ACL +R + H +KT Y Y+
Sbjct: 33 NGRLQEAL---LEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYL 89
Query: 280 AVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFV 339
LL Y K + +AR++ +EMP+K+V+ W+ MI+RY+QT S +A+ +F M ++
Sbjct: 90 RTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDG 149
Query: 340 APNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVE 399
PN+FTF +VL +C GL LG QIH L+V+ S +FV ++L+D+YAK G+++ + E
Sbjct: 150 KPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEARE 209
Query: 400 LFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAA 459
+F P+R+ V+ +I GY QLG +A+ MF ++ E + VTY+S+L A + LA
Sbjct: 210 IFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLAL 269
Query: 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISG 519
L+ G Q HC ++ V+ N+LIDMY+KCG+++ AR +FD M + +SWNAM+ G
Sbjct: 270 LDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVG 329
Query: 520 YSMHGLSAEVLKVFDLMQ-QRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVAN-YGI 577
YS HGL EVL++F LM+ ++ +P+ +T + VLS CS+G + + G F MVA YG
Sbjct: 330 YSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGT 389
Query: 578 EPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQ 637
+P EHY +V +LGRAG +D+A + I+ +P +P+ + +LLGAC +H +V+IG +
Sbjct: 390 KPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGR 449
Query: 638 HILDFEPEDEATHVLLSNIYAMARSW-----------EKAASKEPGLSWIENQGMVHYFR 686
+++ EPE+ +V+LSN+YA A W +KA +KEPG SWI+++ +HYF
Sbjct: 450 RLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFH 509
Query: 687 AGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFA 746
A D +H + ++ +++K ++AGY+PDLS VL DV E++KE+ L HSEKLAL F
Sbjct: 510 ANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFG 569
Query: 747 LFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
L PIR+ KNLRICVDCH KI SK+ +RE+ +RD +RFH DG CSCGD+W
Sbjct: 570 LIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1127 (401.8 bits), Expect = 3.1e-123, Sum P(2) = 3.1e-123
Identities = 235/603 (38%), Positives = 356/603 (59%)
Query: 216 DGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEM 275
DGL+ E+++ F +MR G +P++FTF+ VLKA +GL + + H ++ T +
Sbjct: 228 DGLYT----ESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSR 283
Query: 276 DLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMR 335
D V +LD Y+K + R +F+EMP+ D + ++ +I+ Y+Q D ++ F M+
Sbjct: 284 DASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQ 343
Query: 336 QAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRME 395
F F ++L A + L +G Q+H + S + V N+L+D+YAKC E
Sbjct: 344 CMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFE 403
Query: 396 NSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACA 455
+ +F P+R V+W +I GYVQ G G + +F+KM + A + T+++VL+A A
Sbjct: 404 EAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASA 463
Query: 456 SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNA 515
S A+L G Q+H +++ +V + L+DMYAKCGSI DA VF+ M D N VSWNA
Sbjct: 464 SFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNA 523
Query: 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANY 575
+IS ++ +G + F M + G +P++++ +GVL+ACS+ G +EQG YF++M Y
Sbjct: 524 LISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIY 583
Query: 576 GIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLS 635
GI P +HY M+ LLGR G +A KL++ +PF+P ++W ++L AC IH N + +
Sbjct: 584 GITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERA 643
Query: 636 AQHILDFEP-EDEATHVLLSNIYAMARSWEKA-----ASKEPGL------SWIENQGMVH 683
A+ + E D A +V +SNIYA A WEK A +E G+ SW+E +H
Sbjct: 644 AEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIH 703
Query: 684 YFRAGDTSHADMN-IIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLA 742
F + D +H + + I+R + E L + + GY PD S+V++DV E K L HSE+LA
Sbjct: 704 VFSSNDQTHPNGDEIVRKINE-LTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLA 762
Query: 743 LAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCG 802
+AFAL P PI ++KNLR C DCH AIK+ISKIV+REI +RD RFHHF +G CSCG
Sbjct: 763 VAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCG 822
Query: 803 DFW 805
D+W
Sbjct: 823 DYW 825
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1088 (388.1 bits), Expect = 2.8e-120, Sum P(2) = 2.8e-120
Identities = 223/594 (37%), Positives = 337/594 (56%)
Query: 225 EALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALL 284
+AL M + G N TF L AC D + HG + + + + AL+
Sbjct: 345 DALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALV 404
Query: 285 DLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQF 344
+Y K GE+S +RR+ +MP++DV+ W+ +I YA+ + A+ F MR V+ N
Sbjct: 405 SMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYI 464
Query: 345 TFVSVLQACATMEG--LDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFA 402
T VSVL AC + G L+ G +H+ +V G SD V N+L+ +YAKCG + +S +LF
Sbjct: 465 TVVSVLSACL-LPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFN 523
Query: 403 ESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEP 462
RN +TWN M+ G + + + SKM V + ++S L A A LA LE
Sbjct: 524 GLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEE 583
Query: 463 GMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSM 522
G Q+H L VK ++ D + NA DMY+KCG I + + + + SWN +IS
Sbjct: 584 GQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGR 643
Query: 523 HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIE 582
HG EV F M + G +P ++TFV +L+ACS+GGL+++G AY+ + ++G+EP IE
Sbjct: 644 HGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIE 703
Query: 583 HYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDF 642
H ++ LLGR+G L +A I +P +P+ ++WR+LL +C IH N++ GR +A+++
Sbjct: 704 HCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKL 763
Query: 643 EPEDEATHVLLSNIYAMARSWE-----------KAASKEPGLSWIENQGMVHYFRAGDTS 691
EPED++ +VL SN++A WE K K+ SW++ + V F GD +
Sbjct: 764 EPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRT 823
Query: 692 HADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFKMP 751
H I LE + +++GY+ D S L+D E++KE LW HSE+LALA+AL P
Sbjct: 824 HPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTP 883
Query: 752 PSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
S +RI KNLRIC DCH+ K +S+++ R I++RD +RFHHF+ G CSC D+W
Sbjct: 884 EGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1051 (375.0 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 224/591 (37%), Positives = 342/591 (57%)
Query: 232 QMRAVG--FKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTK 289
QM A G K + T + C + K H +LK + + VA A + Y K
Sbjct: 383 QMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAK 442
Query: 290 SGEISNARRIFEEMPKKDVIPWSFMIARYAQTD---LSIDAVELFCRMRQAFVAPNQFTF 346
G +S A+R+F + K V W+ +I +AQ++ LS+DA +M+ + + P+ FT
Sbjct: 443 CGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDA---HLQMKISGLLPDSFTV 499
Query: 347 VSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK 406
S+L AC+ ++ L LG ++H ++R L D+FV +++ +Y CG + LF
Sbjct: 500 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 559
Query: 407 RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQV 466
++ V+WNT+I GY+Q G +A+ +F +M+ + ++ V AC+ L +L G +
Sbjct: 560 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 619
Query: 467 HCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLS 526
H +K + D +A +LIDMYAK GSIT + VF+ + + + SWNAMI GY +HGL+
Sbjct: 620 HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 679
Query: 527 AEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTS 586
E +K+F+ MQ+ G P++LTF+GVL+AC++ GL+ +G Y M +++G++P ++HY
Sbjct: 680 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 739
Query: 587 MVSLLGRAGHLDKAAKLI-EGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645
++ +LGRAG LDKA +++ E + + V IW++LL +C IH N+E+G A + + EPE
Sbjct: 740 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPE 799
Query: 646 DEATHVLLSNIYAMARSWEKAAS-----------KEPGLSWIENQGMVHYFRAGDTSHAD 694
+VLLSN+YA WE K+ G SWIE V F G+
Sbjct: 800 KPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDG 859
Query: 695 MNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPSS 754
I+ + L MK K GY PD +V D+ E+EK L HSEKLAL + L K +
Sbjct: 860 FEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGT 919
Query: 755 PIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805
IR+ KNLRICVDCH A K+ISK+++REI++RD RFHHF++G CSCGD+W
Sbjct: 920 TIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1049 (374.3 bits), Expect = 1.8e-118, Sum P(2) = 1.8e-118
Identities = 223/553 (40%), Positives = 329/553 (59%)
Query: 282 ALLDLYTKSGEISNARRIFEEMP----KKDVIPWSFMIARYAQTDLSIDAVELFCRMRQA 337
A++ Y++ G +A R+FE+M K DV+ WS I+ YAQ L +A+ + +M +
Sbjct: 300 AMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS 359
Query: 338 FVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRV-------GLLSDVFVSNALMDVYAK 390
+ PN+ T +SVL CA++ L G +IH ++ G + V N L+D+YAK
Sbjct: 360 GIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAK 419
Query: 391 CGRMENSVELFAE-SPK-RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE--QVPATEVT 446
C +++ + +F SPK R+ VTW MI GY Q G+ KA+ + S+M EE Q T
Sbjct: 420 CKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFT 479
Query: 447 YSSVLRACASLAALEPGMQVHCLTVKANYD-MDVVVANALIDMYAKCGSITDARLVFDMM 505
S L ACASLAAL G Q+H ++ + + + V+N LIDMYAKCGSI+DARLVFD M
Sbjct: 480 ISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNM 539
Query: 506 NDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGE 565
NEV+W ++++GY MHG E L +FD M++ G++ + +T + VL ACS+ G+++QG
Sbjct: 540 MAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGM 599
Query: 566 AYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACII 625
YF M +G+ P EHY +V LLGRAG L+ A +LIE +P +P ++W A L C I
Sbjct: 600 EYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRI 659
Query: 626 HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWE-----------KAASKEPGLS 674
H VE+G +A+ I + + ++ LLSN+YA A W+ K K PG S
Sbjct: 660 HGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCS 719
Query: 675 WIEN-QGMVHYFRAGDTSHADMN-IIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKER 732
W+E +G +F GD +H I + +L+ + + + GY+P+ L DV ++EK+
Sbjct: 720 WVEGIKGTTTFF-VGDKTHPHAKEIYQVLLDHMQ-RIKDIGYVPETGFALHDVDDEEKDD 777
Query: 733 YLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFH 792
L+ HSEKLALA+ + P + IRI KNLR+C DCHTA +S+I+ +II+RD RFH
Sbjct: 778 LLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFH 837
Query: 793 HFQDGCCSCGDFW 805
HF++G CSC +W
Sbjct: 838 HFKNGSCSCKGYW 850
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYV3 | PP377_ARATH | No assigned EC number | 0.5568 | 0.9329 | 0.9136 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 805 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-166 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-151 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-53 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 502 bits (1295), Expect = e-166
Identities = 274/813 (33%), Positives = 423/813 (52%), Gaps = 41/813 (5%)
Query: 22 NAWLRGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQ 81
N+ LR L + L + + V E +Y + C ++ + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDE---DAYVALFRLCEWKRAVEEGSRVCSR 111
Query: 82 VLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEA 141
L L + N +L+++V+ L A +F +MPER+ S+ + GY + F EA
Sbjct: 112 ALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA 171
Query: 142 VGLFSTLHREGHELNPFAFTAFLKVLVSMG----WAELCPCVFACVYKLGHDSNAFVGTA 197
+ L+ + G + P +T F VL + G A V A V + G + + V A
Sbjct: 172 LCLYHRMLWAG--VRPDVYT-FPCVLRTCGGIPDLA-RGREVHAHVVRFGFELDVDVVNA 227
Query: 198 LIDAFSVCGCVEFARKVFD---------------GLF-NDCFEEALNFFSQMRAVGFKPN 241
LI + CG V AR VFD G F N E L F MR + P+
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 242 NFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFE 301
T V+ AC L R+ + HG +KT + +D+ V +L+ +Y G A ++F
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 302 EMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDL 361
M KD + W+ MI+ Y + L A+E + M Q V+P++ T SVL ACA + LD+
Sbjct: 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407
Query: 362 GNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQ 421
G ++H L R GL+S V V+NAL+++Y+KC ++ ++E+F P+++ ++W ++I G
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467
Query: 422 LGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVV 481
+A+I F +ML P VT + L ACA + AL G ++H ++ D +
Sbjct: 468 NNRCFEALIFFRQMLLTLKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526
Query: 482 ANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW 541
NAL+D+Y +CG + A F+ ++ + VSWN +++GY HG + +++F+ M + G
Sbjct: 527 PNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585
Query: 542 RPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAA 601
P+ +TF+ +L ACS G++ QG YF SM Y I P ++HY +V LLGRAG L +A
Sbjct: 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645
Query: 602 KLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661
I +P P +W ALL AC IH +VE+G L+AQHI + +P ++LL N+YA A
Sbjct: 646 NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705
Query: 662 SWEKAA-----------SKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSR 710
W++ A + +PG SW+E +G VH F D SH + I +LE K +
Sbjct: 706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK 765
Query: 711 KAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHT 770
+G S+ + ++ E K+ HSE+LA+AF L P PI + KNL +C +CH
Sbjct: 766 ASGLAGSESSSMDEI-EVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHN 824
Query: 771 AIKIISKIVQREIIIRDVHRFHHFQDGCCSCGD 803
+K ISKIV+REI +RD +FHHF+DG CSCGD
Sbjct: 825 TVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 459 bits (1182), Expect = e-151
Identities = 226/615 (36%), Positives = 348/615 (56%), Gaps = 18/615 (2%)
Query: 203 SVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVG-FKPNNFTFAFVLKACLGLDTIRVA 261
S+C +E + V G EAL F + A F T+ +++AC+ L +IR
Sbjct: 89 SLCSQIE--KLVACGRH----REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCV 142
Query: 262 KSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQT 321
K+ + + +E D Y+ +L ++ K G + +ARR+F+EMP++++ W +I
Sbjct: 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA 202
Query: 322 DLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVS 381
+A LF M + TFV +L+A A + G Q+H V++ G++ D FVS
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262
Query: 382 NALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVP 441
AL+D+Y+KCG +E++ +F P++ V WN+M+ GY G +A+ ++ +M + V
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322
Query: 442 ATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLV 501
+ T+S ++R + LA LE Q H ++ + +D+V AL+D+Y+K G + DAR V
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382
Query: 502 FDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLL 561
FD M N +SWNA+I+GY HG + +++F+ M G PN++TF+ VLSAC GL
Sbjct: 383 FDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
Query: 562 EQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLG 621
EQG F+SM N+ I+P HY M+ LLGR G LD+A +I PF+P+V +W ALL
Sbjct: 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLT 502
Query: 622 ACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY-AMARSWEKAASKE---------- 670
AC IH N+E+GRL+A+ + PE +V+L N+Y + R E A E
Sbjct: 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562
Query: 671 PGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEK 730
P +WIE + H F +GD H I L+ L + + GY+ + + +L DV EDE+
Sbjct: 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEE 622
Query: 731 ERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHR 790
+ HSEKLA+AF L +P++I ++ RIC DCH IK I+ + +REI++RD R
Sbjct: 623 KVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASR 682
Query: 791 FHHFQDGCCSCGDFW 805
FHHF+ G CSCGD+W
Sbjct: 683 FHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 2e-53
Identities = 109/333 (32%), Positives = 167/333 (50%), Gaps = 16/333 (4%)
Query: 56 SHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFD 115
+ +Y +++CI ++ ++ V G D + N +L ++VK L DA +LFD
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 116 EMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAEL 175
EMPERN S+ T I G + + EA LF + +G + P F L+ +G A
Sbjct: 183 EMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 176 CPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL----------------F 219
+ CV K G + FV ALID +S CG +E AR VFDG+
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYV 279
+ EEAL + +MR G + FTF+ +++ L + AK AH ++T + +D+
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 280 AVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFV 339
AL+DLY+K G + +AR +F+ MP+K++I W+ +IA Y AVE+F RM V
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 340 APNQFTFVSVLQACATMEGLDLGNQIHSLVVRV 372
APN TF++VL AC + G +I +
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-20
Identities = 46/131 (35%), Positives = 59/131 (45%), Gaps = 23/131 (17%)
Query: 671 PGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEK 730
PG W E +GD SH E L + + G +P+ + DV +E
Sbjct: 1 PGCVWSE----GKKTLSGDGSH------PTSKEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 731 ER------YLWVHSEKLALAFALFKMPPSSPIRIIKNL-RICVDCHTAIKIISKIVQREI 783
L H+EK ALA+ L RIIK L R+C DCH + I+K REI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 784 IIRDVHRFHHF 794
I+RD RFHHF
Sbjct: 105 IVRDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 9e-13
Identities = 84/359 (23%), Positives = 162/359 (45%), Gaps = 24/359 (6%)
Query: 284 LDLYT---KSGEISNARRIFEEMPKKDVIPWSFMI-ARYAQTDLSIDAVELFCRMRQAFV 339
+D Y + G I + + E+M K+ ++ + A++ + AV+ R +
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433
Query: 340 APNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVE 399
P TF ++ CA+ + +D ++ LV GL +D + L+ AK G+++ E
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 400 LFAE----SPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACA 455
+F E + N T+ +I G + G+V KA + M + V V +++++ AC
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 456 SLAALEPGMQVHCLT-VKAN---YDMDVVVANALIDMYAKCGSITDARLVFDMMNDWN-- 509
A++ V L +KA D D + AL+ A G + A+ V+ M++++N
Sbjct: 554 QSGAVDRAFDV--LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 510 ---EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEA 566
EV + ++ S G L ++D M+++G +P+ + F ++ + G L++
Sbjct: 612 GTPEV-YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 567 YFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI---PFQPSVMIWRALLGA 622
+ GI+ Y+S++ A + KA +L E I +P+V AL+ A
Sbjct: 671 ILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 408 NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACA 455
+ VT+NT+I GY + G+V +A+ +F++M + + TYS ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 9e-09
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSN 557
+ V++N +I GY G E LK+F+ M++RG +PN T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRG 540
V++N++ISGY G E L++F M+++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 65/325 (20%), Positives = 135/325 (41%), Gaps = 37/325 (11%)
Query: 325 IDAV-ELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLS------D 377
+DA+ E+F M A V N TF +++ CA Q+ G++ D
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCAR------AGQVAKAFGAYGIMRSKNVKPD 541
Query: 378 VFVSNALMDVYAKCGRMENSVELFAE-----SP-KRNHVTWNTMIVGYVQLGEVGKAMIM 431
V NAL+ + G ++ + ++ AE P +H+T ++ G+V +A +
Sbjct: 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601
Query: 432 FSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK 491
+ + E + T Y+ + +C+ + + ++ K D V +AL+D+
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 492 CGSITDARLVFDMMNDWNE-------VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN 544
G + A F+++ D + VS+++++ S + L++++ ++ RP
Sbjct: 662 AGDLDKA---FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718
Query: 545 NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKL- 603
T +++A G L + M G+ P Y+ ++ R D L
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEM-KRLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 604 ----IEGIPFQPSVMIWRALLGACI 624
+GI +P++++ R + G C+
Sbjct: 778 SQAKEDGI--KPNLVMCRCITGLCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 478 DVVVANALIDMYAKCGSITDARLVFDMMNDW----NEVSWNAMISGY 520
DVV N LID Y K G + +A +F+ M N +++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN 544
V++N +I G G E L++F M++RG P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQV 440
VT+N++I GY + G++ +A+ +F +M E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 7e-04
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 90 DLFATNVLLNVYVKLNRLPDATKLFDEMPER----NTISFVTTIQGY 132
D+ N L++ Y K ++ +A KLF+EM +R N ++ I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 377 DVFVSNALMDVYAKCGRMENSVELFAESPKR----NHVTWNTMIVGY 419
DV N L+D Y K G++E +++LF E KR N T++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 306 KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACA 354
DV+ ++ +I Y + +A++LF M++ + PN +T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 805 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.41 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.41 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.4 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.37 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.31 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.3 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.3 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.3 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.25 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.23 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.17 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.14 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.13 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.08 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.06 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.04 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.03 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.02 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.0 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.99 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.98 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.96 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.92 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.88 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.86 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.81 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.8 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.77 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.74 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.7 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.69 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.69 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.66 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.65 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.63 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.58 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.55 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.54 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.51 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.49 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.4 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.39 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.37 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.32 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.32 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.28 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.28 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.27 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.22 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.21 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.13 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.13 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.12 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.12 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.07 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.06 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.04 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.95 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.92 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.87 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.8 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.75 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.7 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.64 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.61 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.61 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.59 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.57 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.56 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.56 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.52 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.49 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.49 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.4 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.39 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.39 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.36 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.35 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.34 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.32 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.32 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.3 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.28 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.28 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.27 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.24 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.23 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.22 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.19 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.19 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.15 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.14 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.13 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.09 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.04 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.01 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.01 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.94 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.92 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.88 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.85 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.85 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.84 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.82 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.82 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.79 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.78 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.76 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.7 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.69 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.63 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.6 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.6 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.58 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.49 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.45 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.43 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.42 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.34 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.24 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.15 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.89 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.88 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.87 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.84 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.82 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.8 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.71 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.57 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.55 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.52 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.34 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.27 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.02 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.02 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.94 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.87 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.75 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.74 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.6 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.33 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.27 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.16 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.13 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.07 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.04 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.98 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.89 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.68 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.57 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.38 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.17 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.08 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.05 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.04 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.04 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.76 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.72 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.64 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.55 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.54 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.49 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.45 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.39 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.34 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.94 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.87 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.63 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.58 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.55 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.23 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.99 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.8 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.36 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.05 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.91 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.86 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.78 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.72 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.66 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.59 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.41 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.37 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.36 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.02 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.85 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.83 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 88.79 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 88.79 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.15 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.03 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.88 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 86.63 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.6 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 86.13 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.12 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.02 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.91 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 85.8 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.64 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 85.56 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.25 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.07 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.9 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.13 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.85 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.22 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.12 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.07 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.99 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.88 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.63 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.54 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 82.39 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 82.23 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.72 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.48 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.85 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.69 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 80.44 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.15 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-143 Score=1265.32 Aligned_cols=782 Identities=34% Similarity=0.606 Sum_probs=758.9
Q ss_pred cchhhhhhhHHHHHhhchHHhhhhhccCCCCCCCCcccccCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCc
Q 039715 12 CKQLTHQSKINAWLRGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDL 91 (805)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 91 (805)
.....++.++.++.+.+.+..|...+...... ...|+..+|..++++|.+.+.++.|.++|..+.+.++.+++
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 121 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQEL-------RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV 121 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-------CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCc
Confidence 34455677888888888888887776322211 12467889999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccC
Q 039715 92 FATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMG 171 (805)
Q Consensus 92 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 171 (805)
.++|+|+++|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|++.+
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh----------------ccccHHHHHHHHHHHHH
Q 039715 172 WAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL----------------FNDCFEEALNFFSQMRA 235 (805)
Q Consensus 172 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~----------------~~g~~~~A~~~~~~m~~ 235 (805)
++..+.++|..+.+.|+.||+.++|+||++|+++|++++|.++|++| ++|++++|+++|.+|..
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 78999999999999999
Q ss_pred CCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHH
Q 039715 236 VGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMI 315 (805)
Q Consensus 236 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 315 (805)
.|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+||.+|+++|++++|.++|++|.++|+++||+||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChH
Q 039715 316 ARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRME 395 (805)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 395 (805)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCC
Q 039715 396 NSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANY 475 (805)
Q Consensus 396 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 475 (805)
+|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|.++.+.++|..+.+.|+
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999986 6999999999999999999999999999999999999
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 476 DMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 476 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
.++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|++||.+||+.++.+|
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
++.|++++|.++|+.|.+++|+.|+..+|++|+++|+|+|+++||.+++++||++||..+|++|+++|+.||+.+.|+.+
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCChHHHhh-----------cCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHH
Q 039715 636 AQHILDFEPEDEATHVLLSNIYAMARSWEKAAS-----------KEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEW 704 (805)
Q Consensus 636 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-----------~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 704 (805)
++++++++|+++..|+.|+|+|+..|+|++|.+ |.||+|||++++++|.|.+||.+||+.++||.+|++
T Consensus 680 a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~ 759 (857)
T PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759 (857)
T ss_pred HHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred HHHHHHHcCcccCCCccccccchhhhhhhhhhccHHHHHHHhhcCCCCCCCEEEEeeeeccCcchhhHHHHhhhcCceEE
Q 039715 705 LNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREII 784 (805)
Q Consensus 705 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~~~~~c~~~h~~~k~~s~~~~~~~~ 784 (805)
+..+|++.||+||+..++ ++++++|+..|++||||||+|||||+||+|+||||+||||||+|||+++||||++++||||
T Consensus 760 l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~ 838 (857)
T PLN03077 760 FYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREIS 838 (857)
T ss_pred HHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEE
Confidence 999999999999999887 5588999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccccccccCCCC
Q 039715 785 IRDVHRFHHFQDGCCSCGD 803 (805)
Q Consensus 785 ~~d~~~~h~~~~g~csc~~ 803 (805)
|||.+|||||+||+|||||
T Consensus 839 ~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 839 VRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EecCCcceeCCCCcccCCC
Confidence 9999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-120 Score=1049.07 Aligned_cols=602 Identities=37% Similarity=0.638 Sum_probs=587.5
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHC-CCCCChhhHHHHHHHhhCCCCHHHHHHHHHH
Q 039715 189 DSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAV-GFKPNNFTFAFVLKACLGLDTIRVAKSAHGC 267 (805)
Q Consensus 189 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 267 (805)
..+...|+.+|..|.+.|++++|.++| +.|... +..||..||+.++.+|++.++++.+.++|..
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f---------------~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~ 148 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELF---------------EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWH 148 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHH---------------HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 355668888999999888777555555 467765 4789999999999999999999999999999
Q ss_pred HHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH
Q 039715 268 ALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFV 347 (805)
Q Consensus 268 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 347 (805)
+.+.|+.||..+++.|+++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHH
Q 039715 348 SVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGK 427 (805)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 427 (805)
.++.+|++.|+.+.+.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC
Q 039715 428 AMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND 507 (805)
Q Consensus 428 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 507 (805)
|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 039715 508 WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM 587 (805)
Q Consensus 508 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 587 (805)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++|
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 588 VSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
+++|+++|++++|.+++++|++.|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-----------cCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhh
Q 039715 668 S-----------KEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWV 736 (805)
Q Consensus 668 ~-----------~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 736 (805)
+ |.||+|||++++++|.|.+||..||+..+||.+|.++..+|++.||+||+.++++++++++|+..+++
T Consensus 549 ~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~ 628 (697)
T PLN03081 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRY 628 (697)
T ss_pred HHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHh
Confidence 8 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhhcCCCCCCCEEEEeeeeccCcchhhHHHHhhhcCceEEEecCCccccccccccCCCCCC
Q 039715 737 HSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805 (805)
Q Consensus 737 hse~la~~~~~~~~~~~~~~~~~~~~~~c~~~h~~~k~~s~~~~~~~~~~d~~~~h~~~~g~csc~~~w 805 (805)
||||||+|||||++|+|+||||+||||||+|||+|+||||++++|||||||.+|||||+||+|||+|||
T Consensus 629 hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 629 HSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-79 Score=721.78 Aligned_cols=678 Identities=24% Similarity=0.366 Sum_probs=587.1
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHhccCCC----CCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHH
Q 039715 87 NCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE----RNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTA 162 (805)
Q Consensus 87 ~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 162 (805)
..++..++|.++..|++.|++++|..+|+.|++ |+..+|+.++.++.+.+.++.|..++..+.+.|..|+...+++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 356777888888888888888888888888865 6777888888888888888888888888888888888888888
Q ss_pred HHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCCh
Q 039715 163 FLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNN 242 (805)
Q Consensus 163 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 242 (805)
++..|++.|+++.|.++|+.|. +||+.+||.||.+|++.|++++ |+++|++|...|+.||.
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~---------------A~~~f~~M~~~g~~Pd~ 187 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDE---------------ALCLYHRMLWAGVRPDV 187 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHH---------------HHHHHHHHHHcCCCCCh
Confidence 8888888888888888888885 4788888888888888887765 55555588899999999
Q ss_pred hhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 039715 243 FTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTD 322 (805)
Q Consensus 243 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 322 (805)
+||+.++++|+..+++..++++|..+++.|+.||..++|+||.+|+++|++++|.++|++|+++|+++||+||.+|++.|
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG 267 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHh
Q 039715 323 LSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFA 402 (805)
Q Consensus 323 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 402 (805)
++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|+
T Consensus 268 ~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHH
Q 039715 403 ESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVA 482 (805)
Q Consensus 403 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 482 (805)
+|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++
T Consensus 348 ~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred hCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 039715 483 NALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 562 (805)
|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.+ +++||..||+.++.+|++.|.++
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 99999999999999999999999999999999999999999999999999999986 59999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-
Q 039715 563 QGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILD- 641 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 641 (805)
++.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|++|+.+|.++|+.++|+++|+++.+
T Consensus 507 ~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 507 CGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999966 99999999999999999999999999999999 79999999999999999999999999999987
Q ss_pred -cCCCCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeCCCCCccHH------HHHH---HHHHHHHHHHH
Q 039715 642 -FEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAGDTSHADMN------IIRG---MLEWLNMKSRK 711 (805)
Q Consensus 642 -~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~------~i~~---~l~~l~~~~~~ 711 (805)
+.| |..+|..+...|.+.|++++|.+-.. .........|+.. .++. .+++..+.+++
T Consensus 584 g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~------------~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 584 GVNP-DEVTFISLLCACSRSGMVTQGLEYFH------------SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred CCCC-CcccHHHHHHHHhhcChHHHHHHHHH------------HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456 66789999999999999999988000 0000011223322 1121 24566666777
Q ss_pred cCcccCCCccccccchhhhhhhhhhccHHHH-HHHhhcCCCCCCCEEEEeeeeccCcchhhHHHHhhhcCceE-------
Q 039715 712 AGYIPDLSAVLRDVREDEKERYLWVHSEKLA-LAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREI------- 783 (805)
Q Consensus 712 ~g~~~~~~~~~~~~~~~~~~~~~~~hse~la-~~~~~~~~~~~~~~~~~~~~~~c~~~h~~~k~~s~~~~~~~------- 783 (805)
.+..||...|..-+..+....-+- --|+.| ..+.+.+...+.-+.+.+-....|+..++.+....+..+.+
T Consensus 651 m~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 651 MPITPDPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred CCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 788898766544444332211110 012222 23555555555554444555678889999998887766633
Q ss_pred EEecCCccccccccccCC
Q 039715 784 IIRDVHRFHHFQDGCCSC 801 (805)
Q Consensus 784 ~~~d~~~~h~~~~g~csc 801 (805)
.|.-.+..|-|..|.-|-
T Consensus 730 ~ie~~~~~~~f~~~d~~h 747 (857)
T PLN03077 730 WVEVKGKVHAFLTDDESH 747 (857)
T ss_pred EEEECCEEEEEecCCCCC
Confidence 122346788887776543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=622.90 Aligned_cols=532 Identities=16% Similarity=0.200 Sum_probs=483.6
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCC-CCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHH
Q 039715 53 EFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGN-CLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQG 131 (805)
Q Consensus 53 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 131 (805)
.++...|..++..|.+.|++++|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|+.||..+||.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45567789999999999999999999999999986 56778889999999999999999999999999999999999999
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHH
Q 039715 132 YTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFA 211 (805)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 211 (805)
|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++|+.|.+.|+.||..+||.||++|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988755
Q ss_pred HHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHH--hCCCCcHhHHHHHHHHHHc
Q 039715 212 RKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALK--TCYEMDLYVAVALLDLYTK 289 (805)
Q Consensus 212 ~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~ 289 (805)
.++| .+|...|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.||..+|++||.+|++
T Consensus 527 l~lf---------------~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 527 FGAY---------------GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHH---------------HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 5555 5889999999999999999999999999999999999987 6789999999999999999
Q ss_pred CCChHHHHHHHhhCCCC----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHH
Q 039715 290 SGEISNARRIFEEMPKK----DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQI 365 (805)
Q Consensus 290 ~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 365 (805)
+|++++|.++|++|.+. +..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999764 55889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 039715 366 HSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP----KRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVP 441 (805)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 441 (805)
++.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999985 589999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHH----hcCCHHHHHHHhhhcCCCCHhHHHHHH
Q 039715 442 ATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYA----KCGSITDARLVFDMMNDWNEVSWNAMI 517 (805)
Q Consensus 442 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~~~~~~~li 517 (805)
||..||++++.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++. ++++..++...|+.+...+...|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w---- 827 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW---- 827 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch----
Confidence 9999999999999999999999999999999999999999999998743 33333333333433333333334
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCH
Q 039715 518 SGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHL 597 (805)
Q Consensus 518 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 597 (805)
.++|+.+|++|++.|+.||..||+.++.++...+..+.+..+++.|... +..|+..+|++||+.+++. .
T Consensus 828 --------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~ 896 (1060)
T PLN03218 828 --------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--D 896 (1060)
T ss_pred --------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--h
Confidence 4569999999999999999999999997777888888888888777644 6677889999999988542 4
Q ss_pred HHHHHHHHcC---CCCCCHH
Q 039715 598 DKAAKLIEGI---PFQPSVM 614 (805)
Q Consensus 598 ~eA~~~~~~~---~~~p~~~ 614 (805)
++|..++++| .+.|+..
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 7899999988 3556653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-66 Score=594.21 Aligned_cols=470 Identities=24% Similarity=0.382 Sum_probs=428.5
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHhccCC-----CCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHH
Q 039715 88 CLDLFATNVLLNVYVKLNRLPDATKLFDEMP-----ERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTA 162 (805)
Q Consensus 88 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 162 (805)
..+...++++|..|.+.|++++|.++|+.|. .||..+|++++.++++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3455677888888888888888888887774 25667788888888888888888888888888888888888888
Q ss_pred HHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCCh
Q 039715 163 FLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNN 242 (805)
Q Consensus 163 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 242 (805)
++++|++.|+++.|.++|+.|. .||..+||+||.+|++.|+++ +|+++|++|.+.|+.||.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~---------------~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYR---------------EAFALFREMWEDGSDAEP 224 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHH---------------HHHHHHHHHHHhCCCCCh
Confidence 8888888888888888887774 477778888888888777666 555556688999999999
Q ss_pred hhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 039715 243 FTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTD 322 (805)
Q Consensus 243 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 322 (805)
.||+.++.+|+..|..+.++++|..+.+.|+.+|..++++||++|+++|++++|.++|++|+++|+++||+||.+|++.|
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHh
Q 039715 323 LSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFA 402 (805)
Q Consensus 323 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 402 (805)
++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.+|..++++|+++|+++|++++|.++|+
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHH-cCCCCcHhH
Q 039715 403 ESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVK-ANYDMDVVV 481 (805)
Q Consensus 403 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 481 (805)
+|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+
T Consensus 385 ~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred hCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 699999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcC-CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCC
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMN-DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGG 559 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 559 (805)
|++++++|++.|++++|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCC
Confidence 9999999999999999999999997 67999999999999999999999999999976 5675 568999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCC
Q 039715 560 LLEQGEAYFKSMVANYGIEP 579 (805)
Q Consensus 560 ~~~~a~~~~~~m~~~~~~~p 579 (805)
++++|.++++.|.++ |+.+
T Consensus 543 ~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 543 RQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred CHHHHHHHHHHHHHc-CCcc
Confidence 999999999999876 7754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=574.18 Aligned_cols=522 Identities=14% Similarity=0.133 Sum_probs=436.3
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcc-----hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHH
Q 039715 87 NCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTI-----SFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFT 161 (805)
Q Consensus 87 ~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 161 (805)
..++...|..++..|+++|++++|+++|++|++++.. .++.++.+|.+.|..++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 3467788999999999999999999999999876654 455677789999999999999999975 9999999
Q ss_pred HHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCC
Q 039715 162 AFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPN 241 (805)
Q Consensus 162 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 241 (805)
.+|++|++.|+++.|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|+ +|.+.|+.||
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~---------------eM~~~Gv~Pd 506 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH---------------EMVNAGVEAN 506 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHH---------------HHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999998886666655 7889999999
Q ss_pred hhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCC------CCCcccHHHHH
Q 039715 242 NFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMP------KKDVIPWSFMI 315 (805)
Q Consensus 242 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------~~~~~~~~~li 315 (805)
..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.++|++||
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999884 36778888999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChH
Q 039715 316 ARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRME 395 (805)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 395 (805)
.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|..+|+.|.+.|+.||..+|++|+++|++.|+++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999998888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHH
Q 039715 396 NSVELFAESPK----RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTV 471 (805)
Q Consensus 396 ~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 471 (805)
+|.++|+.|.+ +|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888877753 57777888888888888888888888888777778888888888888888888888888888877
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 039715 472 KANYDMDVVVANALIDMYAKCGSITDARLVFDMMN----DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT 547 (805)
Q Consensus 472 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 547 (805)
+.|+.||..+|++|+.+|++.|++++|.++|++|. .+|..+|++++..|. +++++|.++.+.+..- .+
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f--~~---- 818 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF--DS---- 818 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh--hc----
Confidence 77777777777777777777777777777777775 457777777775443 2455555554444321 11
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI---PFQPSVMIWRALLGACI 624 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~p~~~~~~~l~~~~~ 624 (805)
.......+..++|..+|++|.+. |+.||..+|+.++..+.+.+..+.+..+++.| +..|+..+|++|+.++.
T Consensus 819 ----g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 819 ----GRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred ----cccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 00111123346799999999977 99999999999999999999999999999988 45677899999999984
Q ss_pred HcCCHHHHHHHHHHHhcc
Q 039715 625 IHNNVEIGRLSAQHILDF 642 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~ 642 (805)
.. .++|..+++.+.+.
T Consensus 894 ~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 894 EY--DPRAFSLLEEAASL 909 (1060)
T ss_pred cC--hHHHHHHHHHHHHc
Confidence 32 46899999999873
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=343.47 Aligned_cols=634 Identities=12% Similarity=0.037 Sum_probs=290.5
Q ss_pred hhhhhhhHHHHHhhchHHhhhhhccCCCCCCCCcccccCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcch
Q 039715 14 QLTHQSKINAWLRGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFA 93 (805)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 93 (805)
...+.-.+..+...+....|...+...-. ..+.++..+..+...+...|+++.|...+..+.+..+.. ...
T Consensus 193 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 263 (899)
T TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIA--------LRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS-PLA 263 (899)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chH
Confidence 34444455566666666666655411000 001223445555555556666666666666655544321 222
Q ss_pred HHHHHHHHHhCCCchHHHHHhccCCC--CC-cchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhcc
Q 039715 94 TNVLLNVYVKLNRLPDATKLFDEMPE--RN-TISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSM 170 (805)
Q Consensus 94 ~~~ll~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 170 (805)
.......+...|++++|...|+++.+ |+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 342 (899)
T TIGR02917 264 HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRL 342 (899)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC
Confidence 22222333445555555555554432 11 1122233334444555555555555544421 11222333444444445
Q ss_pred CCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh-------------------ccccHHHHHHHHH
Q 039715 171 GWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL-------------------FNDCFEEALNFFS 231 (805)
Q Consensus 171 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------------------~~g~~~~A~~~~~ 231 (805)
|+++.|...+..+.+.. +.+...++.+...|.+.|++++|.+.|+++ ..|++++|+..|.
T Consensus 343 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 55555555554444433 223344444445555555555555554443 3344444444444
Q ss_pred HHHHCCC---------------------------------CCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHh
Q 039715 232 QMRAVGF---------------------------------KPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLY 278 (805)
Q Consensus 232 ~m~~~g~---------------------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 278 (805)
++..... .++..++..+...+...|+++.|.+.+..+++.. +.+..
T Consensus 422 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 500 (899)
T TIGR02917 422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFP 500 (899)
T ss_pred HHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHH
Confidence 4444322 2233344444444444455555555554444432 22233
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 039715 279 VAVALLDLYTKSGEISNARRIFEEMPK---KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACAT 355 (805)
Q Consensus 279 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 355 (805)
.+..+...+...|++++|.+.|+++.. .+..++..+...+.+.|+.++|...|+++...+ +.+...+..+...+..
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLG 579 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHH
Confidence 344444444445555555555444432 123334444444545555555555555444332 1223334444444445
Q ss_pred cCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHH
Q 039715 356 MEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMF 432 (805)
Q Consensus 356 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 432 (805)
.|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|
T Consensus 580 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 580 KGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555444432 33344444555555555555555555544321 13334444455555555555555555
Q ss_pred HHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCH
Q 039715 433 SKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN--DWNE 510 (805)
Q Consensus 433 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~ 510 (805)
+++.+.. +.+..++..+...+...|++++|.+++..+.+.. +.+...+..+...|.+.|++++|.+.|+++. .++.
T Consensus 659 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 659 KRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 5544321 1223344444444555555555555555444443 2334444444555555555555555555443 2223
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSL 590 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 590 (805)
.++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+++.+. -+++...+..++.+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~ 813 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWL 813 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 344444555555555555555555554431 223334444444455555555555555555432 12234445555555
Q ss_pred HHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 591 LGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
+.+.|+ ++|+++++++ ...| +...|..++..+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.
T Consensus 814 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 814 YLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 555555 4455555433 1122 23344455555555555555555555555555555555555555555555555554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=341.04 Aligned_cols=635 Identities=12% Similarity=0.038 Sum_probs=413.2
Q ss_pred ccchhhhhhhHHHHHhhchHHhhhhhccCCCCCCCCcccccCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCC
Q 039715 11 SCKQLTHQSKINAWLRGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLD 90 (805)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 90 (805)
|.....+......+...+.+..|.......-. ..+.+...+..+...+...|+++.|...+..+.+..+ .+
T Consensus 156 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~ 226 (899)
T TIGR02917 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLT--------ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NN 226 (899)
T ss_pred CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CC
Confidence 33445566677778888888888776511100 0123456677777888899999999999999988765 46
Q ss_pred cchHHHHHHHHHhCCCchHHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHH
Q 039715 91 LFATNVLLNVYVKLNRLPDATKLFDEMPE--R-NTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPF-AFTAFLKV 166 (805)
Q Consensus 91 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~ 166 (805)
..++..++..+...|++++|...|+.+.+ | +...+......+...|++++|+..|+++.+.+ |+.. .+..+...
T Consensus 227 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~ 304 (899)
T TIGR02917 227 PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGAS 304 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHH
Confidence 67888899999999999999999998754 2 23344444555678899999999999998843 5433 44445566
Q ss_pred HhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh-------------------ccccHHHHH
Q 039715 167 LVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL-------------------FNDCFEEAL 227 (805)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------------------~~g~~~~A~ 227 (805)
+...|+++.|...+..+.+.. +.+...+..+...+.+.|++++|...++.+ ..|++++|+
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 778999999999999998876 345677888999999999999999999876 679999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC--
Q 039715 228 NFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK-- 305 (805)
Q Consensus 228 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 305 (805)
+.|+++.+... .+...+..+...+...|+.+.|.+.+..+.+.... .......++..|.+.|++++|..+++.+..
T Consensus 384 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 384 EYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999987542 24456667777778889999999888888776532 234455566777777777777777777653
Q ss_pred -CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHH
Q 039715 306 -KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNAL 384 (805)
Q Consensus 306 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 384 (805)
.+...|+.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.+ +.+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 244567777777777777777777777776542 2234455556666667777777777777776654 3455566666
Q ss_pred HHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCch
Q 039715 385 MDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALE 461 (805)
Q Consensus 385 i~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 461 (805)
...|.+.|+.++|...|+++.. .+...+..++..|.+.|++++|+.+++++.... +.+..++..+...+...|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 6666667777777666665432 234455566666666666666666666665432 334445566666666666666
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
+|...+..+.+.. +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|+.+++.+.+
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665543 33445555666666666666666666665542 2445555555555555666666665555555
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHH
Q 039715 539 RGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIW 616 (805)
Q Consensus 539 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~ 616 (805)
.+ .++...+..+...+...|++++|...|+.+.. ..|+...+..++.++.+.|++++|.+.++++ .. ..+...+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 42 22334444455555555555555555555542 2344444445555555555555555555443 11 1234445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+...|...|+.++|+..++++++..|+++..+..++.+|...|+ ++|..
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 5555555555555555555555555555555555555555555555 44444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=238.57 Aligned_cols=106 Identities=57% Similarity=0.912 Sum_probs=97.2
Q ss_pred CCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhccHHHHH
Q 039715 672 GLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEK--------ERYLWVHSEKLAL 743 (805)
Q Consensus 672 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 743 (805)
|+||+++ |.|.+||.+||+. .+..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999987 9999999999998 455566788999999999888887766 6689999999999
Q ss_pred HHhhcCCCCCCCEEEEeee-eccCcchhhHHHHhhhcCceEEEecCCcccccc
Q 039715 744 AFALFKMPPSSPIRIIKNL-RICVDCHTAIKIISKIVQREIIIRDVHRFHHFQ 795 (805)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~-~~c~~~h~~~k~~s~~~~~~~~~~d~~~~h~~~ 795 (805)
||||+++ ||+||+ |||+|||+|+|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-25 Score=270.11 Aligned_cols=591 Identities=10% Similarity=0.016 Sum_probs=443.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcch-H----------
Q 039715 59 YATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTIS-F---------- 125 (805)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~-~---------- 125 (805)
+...++.+...++.+.|.+.+.++....+. ++.++..+...+.+.|+.++|.+.+++..+ |+... +
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 556667788899999999999999887664 677788889999999999999999998865 43322 1
Q ss_pred ------HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHH
Q 039715 126 ------VTTIQGYTVSSQFVEAVGLFSTLHREGHELNPF-AFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTAL 198 (805)
Q Consensus 126 ------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 198 (805)
..+...+...|++++|+..|+++.+.. +|+.. ............++.++|...++.+.+.. +.+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 223446788999999999999998742 23322 11111222334689999999999999886 4466788899
Q ss_pred HHHHHhcCCHHHHHHHHhhhcc---ccHHHHHHHHHHHHHCC------------------------------------CC
Q 039715 199 IDAFSVCGCVEFARKVFDGLFN---DCFEEALNFFSQMRAVG------------------------------------FK 239 (805)
Q Consensus 199 i~~y~~~g~~~~A~~~~~~~~~---g~~~~A~~~~~~m~~~g------------------------------------~~ 239 (805)
...+...|+.++|...|+++.. +....+...++.+...+ ..
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999998721 11111211112111111 11
Q ss_pred CChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCc-----ccHHHH
Q 039715 240 PNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDV-----IPWSFM 314 (805)
Q Consensus 240 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-----~~~~~l 314 (805)
|+... ......+...|+++.|...++..++.. +.+..++..|...|.+.|++++|+..|++..+.+. ..|..+
T Consensus 268 p~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 268 PAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred cchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 11111 122345567899999999999998875 34677888899999999999999999988764322 123222
Q ss_pred ------------HHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHH
Q 039715 315 ------------IARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSN 382 (805)
Q Consensus 315 ------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 382 (805)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.++.+++.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 345678899999999999998863 2345566677888899999999999999999875 34456677
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCC------------hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC-hhhHHH
Q 039715 383 ALMDVYAKCGRMENSVELFAESPKRN------------HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPAT-EVTYSS 449 (805)
Q Consensus 383 ~Li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 449 (805)
.+...|. .++.++|..+++.++... ...+..+...+...|++++|++.|++.++. .|+ ...+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 7777775 467899999988776431 123556677888999999999999999875 454 346677
Q ss_pred HHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC----CH---------hHHHHH
Q 039715 450 VLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW----NE---------VSWNAM 516 (805)
Q Consensus 450 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l 516 (805)
+...+.+.|++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 8888999999999999999998765 345555666666778899999999999988632 11 123345
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG 595 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 595 (805)
...+...|+.++|+++++. .+++...+..+...+...|+.++|+..|+.+.+ ..| +...+..++.+|...|
T Consensus 580 a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCC
Confidence 6778899999999999872 234555677788889999999999999999985 356 5788899999999999
Q ss_pred CHHHHHHHHHcCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc------hHHHHHHHHHhcCChHHHh
Q 039715 596 HLDKAAKLIEGIP-FQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA------THVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 596 ~~~eA~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~ 667 (805)
++++|++.+++.+ ..| +...+..+..++...|++++|...++++++..|+++. .+..++.++...|++++|.
T Consensus 652 ~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 652 DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999774 344 4567888888999999999999999999998776543 5667799999999999999
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
.
T Consensus 732 ~ 732 (1157)
T PRK11447 732 E 732 (1157)
T ss_pred H
Confidence 8
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-24 Score=257.57 Aligned_cols=560 Identities=12% Similarity=0.044 Sum_probs=414.7
Q ss_pred HHHHHHHhCCCchHHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchH------------
Q 039715 96 VLLNVYVKLNRLPDATKLFDEMPE--R-NTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAF------------ 160 (805)
Q Consensus 96 ~ll~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------------ 160 (805)
..+..+...++.+.|++.++++.. | |...+..++..+.+.|+.++|.+.+++..+. .|+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCC
Confidence 355677888999999999988753 3 5667888999999999999999999999984 4655433
Q ss_pred -----HHHHHHHhccCCccchhhHHHHHHHhCCCCchhh-HHHHHHHHHhcCCHHHHHHHHhhh----------------
Q 039715 161 -----TAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFV-GTALIDAFSVCGCVEFARKVFDGL---------------- 218 (805)
Q Consensus 161 -----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~---------------- 218 (805)
..+...+...|++++|.+.++.+.+... ++... ...+.......|+.++|.+.|+++
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2233457789999999999999987653 33221 111122223458999999999888
Q ss_pred ---ccccHHHHHHHHHHHHHCCCCCCh--hh-----------------HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCc
Q 039715 219 ---FNDCFEEALNFFSQMRAVGFKPNN--FT-----------------FAFVLKACLGLDTIRVAKSAHGCALKTCYEMD 276 (805)
Q Consensus 219 ---~~g~~~~A~~~~~~m~~~g~~p~~--~t-----------------~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 276 (805)
..|++++|+..|+++......... .. +...+..+-.......+...+....+....|+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 678899999999998764321100 01 11111112222223444455544443333333
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHH------
Q 039715 277 LYVAVALLDLYTKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQ-FTF------ 346 (805)
Q Consensus 277 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~------ 346 (805)
.. ...+...+...|++++|...|++..+. +...+..|...|.+.|++++|+..|++..+....... ..+
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 22 223456677899999999999987642 5567889999999999999999999999875432211 111
Q ss_pred ------HHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 039715 347 ------VSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIV 417 (805)
Q Consensus 347 ------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 417 (805)
......+.+.|++++|...++.+++.. +.+...+..|..+|...|++++|++.|++..+ .+...+..+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122345678899999999999999876 45667788899999999999999999998664 34556777777
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCC--------CChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 039715 418 GYVQLGEVGKAMIMFSKMLEEQVP--------ATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMY 489 (805)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 489 (805)
.|. .++.++|+.+++.+...... .....+..+...+...|++++|.+.++.+++.. +.+..++..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 775 46789999998876432110 001234456677888999999999999999876 44677888899999
Q ss_pred HhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHc
Q 039715 490 AKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL---------TFVGVLSACSN 557 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~ 557 (805)
.+.|++++|...|+++.+ .+...+..+...+...|+.++|+..++++......++.. .+......+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999998753 256667667777788999999999998875433222221 23345667889
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
.|+.++|..+++. ..++...+..+.+.|.+.|++++|++.|+++ ...| +...+..++..+...|+.++|+..
T Consensus 586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998761 2345667788999999999999999999976 3345 567899999999999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 636 AQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 636 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++++..|+++..+..++.++...|++++|.+
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999988
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-21 Score=225.35 Aligned_cols=572 Identities=9% Similarity=-0.009 Sum_probs=345.2
Q ss_pred hHHHHHHH--hhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHHHHH
Q 039715 58 SYATSLQS--CIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTISFVTTIQGYT 133 (805)
Q Consensus 58 ~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~ 133 (805)
++..++.+ +...|++++|...+.++++..+.. ..++..|...|.+.|+.++|+..+++..+ |+-.-|..++..+
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 34445554 345699999999999999998865 88899999999999999999999998865 3323333333333
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHH-----hccCCccchhhHHHHHHHhCCCCchhhHHHH-HHHHHhcC
Q 039715 134 VSSQFVEAVGLFSTLHREGHELNPF-AFTAFLKVL-----VSMGWAELCPCVFACVYKLGHDSNAFVGTAL-IDAFSVCG 206 (805)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g 206 (805)
+++++|..+++++.. ..|+.. .+..+.... .+..+.+.+.+.++ .......|+..+.... ...|.+.|
T Consensus 122 --~~~~kA~~~ye~l~~--~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 122 --PVEVKSVTTVEELLA--QQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred --ccChhHHHHHHHHHH--hCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 889999999999998 456654 443333330 22333467777776 4444444455544544 88898888
Q ss_pred CHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 039715 207 CVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLG-LDTIRVAKSAHGCALKTCYEMDLYVAVALLD 285 (805)
Q Consensus 207 ~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 285 (805)
++++|...+. ++.+.++.. ..-...+-.++.. .++ +.+..++.. .+..+..++..+..
T Consensus 197 dw~~Ai~lL~---------------~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~ 255 (987)
T PRK09782 197 QWSQADTLYN---------------EARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYAT 255 (987)
T ss_pred CHHHHHHHHH---------------HHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHH
Confidence 7776666555 445443222 1112233333433 233 444444331 22345666666666
Q ss_pred HHHcCCChHHHHHHHhhCCCC-----Cccc------------------------------HHHHHHHHHhCCChhHHHHH
Q 039715 286 LYTKSGEISNARRIFEEMPKK-----DVIP------------------------------WSFMIARYAQTDLSIDAVEL 330 (805)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~-----~~~~------------------------------~~~li~~~~~~g~~~~A~~~ 330 (805)
.|.+.|+.++|.+++.+++.- +..+ .-.++..+.++++++.+.++
T Consensus 256 ~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (987)
T PRK09782 256 ALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL 335 (987)
T ss_pred HHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 666666666666666665421 0000 11124445555555544433
Q ss_pred -----------------------------HHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHh-C-CCccHH
Q 039715 331 -----------------------------FCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRV-G-LLSDVF 379 (805)
Q Consensus 331 -----------------------------~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~ 379 (805)
++.|.+.. +-+....--+--...+.|+.++|.++++..... + -..+..
T Consensus 336 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 336 LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 33332220 002222222222234566677777777766552 1 112344
Q ss_pred HHHHHHHHHHhcCChH---HHHHH-------------------------HhcCCC---C--ChhhHHHHHHHHHHcCChH
Q 039715 380 VSNALMDVYAKCGRME---NSVEL-------------------------FAESPK---R--NHVTWNTMIVGYVQLGEVG 426 (805)
Q Consensus 380 ~~~~Li~~y~~~g~~~---~A~~~-------------------------f~~~~~---~--~~~~~~~li~~~~~~g~~~ 426 (805)
..+-|+..|.+.+.+. .+..+ +..... . +...|..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 5556777777766522 22222 111111 1 44556666666665 6777
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC
Q 039715 427 KAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN 506 (805)
Q Consensus 427 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 506 (805)
+|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+...+.+.|+.++|.+.|++..
T Consensus 494 eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 494 VALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777766666553 355444333444445777777777777776543 2333345566667777777777777777766
Q ss_pred CCCHhHHHHH---HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChH
Q 039715 507 DWNEVSWNAM---ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIE 582 (805)
Q Consensus 507 ~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 582 (805)
+.++..++.. ...+...|++++|+..|++..+ +.|+...+..+..++.+.|+.++|...+++.. .+.| +..
T Consensus 570 ~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~ 644 (987)
T PRK09782 570 QRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSN 644 (987)
T ss_pred hcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHH
Confidence 4433322222 2233344777888887777777 45666677777777777788888887777776 3455 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
.+..+...+...|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..+....+++..+.
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 6777777777777888877777755 3344 4557777777777778888888888888888887777777777777777
Q ss_pred CChHHHhh
Q 039715 661 RSWEKAAS 668 (805)
Q Consensus 661 g~~~~a~~ 668 (805)
.+++.|.+
T Consensus 725 ~~~~~a~~ 732 (987)
T PRK09782 725 FNFRRLHE 732 (987)
T ss_pred HHHHHHHH
Confidence 77777776
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-20 Score=218.51 Aligned_cols=531 Identities=10% Similarity=0.005 Sum_probs=380.3
Q ss_pred HhCCCchHHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhh
Q 039715 102 VKLNRLPDATKLFDEMPE--R-NTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPC 178 (805)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 178 (805)
...|++++|...|+...+ | +...+..|...|...|++++|+..+++..+ ..|+...|..++..+ ++...|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHHHHh---ccChhHHH
Confidence 345999999999998764 4 455789999999999999999999999998 467766666655333 88999999
Q ss_pred HHHHHHHhCCCCchhhHHHHHHH--------HHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHH-H
Q 039715 179 VFACVYKLGHDSNAFVGTALIDA--------FSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFV-L 249 (805)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l 249 (805)
+++++.+... .+..++..+... |.+.+ +|.+.++ .......|+....... .
T Consensus 130 ~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~e------------------qAl~AL~-lr~~~~~~~~~vL~L~~~ 189 (987)
T PRK09782 130 TVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLP------------------VARAQLN-DATFAASPEGKTLRTDLL 189 (987)
T ss_pred HHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHH------------------HHHHHHH-HhhhCCCCCcHHHHHHHH
Confidence 9999998873 334444444444 55542 3444444 3344455556655555 8
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHc-CCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHH
Q 039715 250 KACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTK-SGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAV 328 (805)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (805)
..+...++++.+..++..+.+.+.. +......|...|.. .++ +.+..+++...+.++..+..+...|.+.|+.++|.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 8999999999999999999999744 35556667778887 477 99999988655668888999999999999999999
Q ss_pred HHHHHHHHCCCC-CChhHHHHH------------------------------HHHHhccCCchHHHHHH-----------
Q 039715 329 ELFCRMRQAFVA-PNQFTFVSV------------------------------LQACATMEGLDLGNQIH----------- 366 (805)
Q Consensus 329 ~~~~~m~~~g~~-p~~~t~~~l------------------------------l~~~~~~~~~~~a~~~~----------- 366 (805)
.+++++...-.. |+..++..+ +..+.+.++++.++++.
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEE 347 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHH
Confidence 999998654222 333332222 22223333333333221
Q ss_pred ------------------HHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC-C-----ChhhHHHHHHHHHHc
Q 039715 367 ------------------SLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK-R-----NHVTWNTMIVGYVQL 422 (805)
Q Consensus 367 ------------------~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~ 422 (805)
..+.+.. +-+....--+.-...+.|+.++|..+|+..-. + +...-+-++..|.++
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 1111110 11222222333345567888889988877544 1 223444677777777
Q ss_pred CC---hHHHHHH------------HHH----------Hhh-cCCCC---ChhhHHHHHHHHhccCCchhHHHHHHHHHHc
Q 039715 423 GE---VGKAMIM------------FSK----------MLE-EQVPA---TEVTYSSVLRACASLAALEPGMQVHCLTVKA 473 (805)
Q Consensus 423 g~---~~~A~~~------------~~~----------m~~-~g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 473 (805)
+. ..++..+ ..+ ... .+..| +...+..+..++.. ++.++|...+......
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 65 3444333 111 111 11223 34455555555555 7888899977777765
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHH
Q 039715 474 NYDMDVVVANALIDMYAKCGSITDARLVFDMMND--WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVG 550 (805)
Q Consensus 474 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 550 (805)
. |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.++. .|+.. .+..
T Consensus 506 ~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~ 581 (987)
T PRK09782 506 Q--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWW 581 (987)
T ss_pred C--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHH
Confidence 4 3443444455556789999999999998763 44556778888899999999999999999985 45543 3334
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCC
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNN 628 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 628 (805)
+.......|++++|...+++.. .+.|+...|..+..++.+.|++++|+..+++. ...|+ ...+..+..++...|+
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 4445567799999999999988 45788889999999999999999999999976 44564 5688999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++|+..++++++++|+++.++..++.+|...|++++|..
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999999988
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-22 Score=203.93 Aligned_cols=443 Identities=12% Similarity=0.107 Sum_probs=353.7
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 039715 208 VEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLY 287 (805)
Q Consensus 208 ~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 287 (805)
.+-|.+.| +.|++++|.+.-...-.+. ..+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+
T Consensus 52 l~lah~~y---q~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 52 LELAHRLY---QGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHH---hccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 33444444 3667777766544333322 1122222223334445555554443333333332 23456888899999
Q ss_pred HcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH-HhccCCchHHH
Q 039715 288 TKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQA-CATMEGLDLGN 363 (805)
Q Consensus 288 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~ 363 (805)
-..|++++|+.+++.+.+. .+..|..+..++...|+.+.|...|.+.++ +.|+.+...+-+.- ....|.+++|.
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999988653 466799999999999999999999999887 56776655443333 34578999999
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 039715 364 QIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRN---HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQV 440 (805)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 440 (805)
..|.+.++.. +--..+|+.|...+...|++..|+..|++..+-| ...|-.|...|...+.+++|+..+.+....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 9999888764 2335678999999999999999999999977644 347889999999999999999999988764
Q ss_pred CCCh-hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHH
Q 039715 441 PATE-VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAM 516 (805)
Q Consensus 441 ~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 516 (805)
.|+. ..+..+...|...|.++.|+..+++.++.. +.-...|+.|..++-..|++.+|.+.+.+... ....+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 5654 467777777889999999999999999875 33567899999999999999999999998873 357789999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhc
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRA 594 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 594 (805)
...|...|+.++|..+|....+ +.|.-. .++.|...|-++|++++|+..+++.+ .|+|+ ...|+.|+..|-..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHh
Confidence 9999999999999999999999 788754 79999999999999999999999988 68997 47899999999999
Q ss_pred CCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 039715 595 GHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 595 g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 666 (805)
|+.++|.+.+.+. .+.|. ....+.|...|...|+..+|+..|+.++++.||.+.+|-.|.-.+.-.-.|.+-
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 9999999999866 56776 457999999999999999999999999999999999999998887777777773
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=197.31 Aligned_cols=407 Identities=12% Similarity=0.141 Sum_probs=329.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChh
Q 039715 249 LKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK---KDVIPWSFMIARYAQTDLSI 325 (805)
Q Consensus 249 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 325 (805)
..-..+.|++.+|.+--..+-... +.+....-.+-..+.+..+.+....--....+ ....+|..+...+-..|+++
T Consensus 55 ah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 55 AHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHH
Confidence 334456788888877655443332 11222222233455555555544332222222 23456889999999999999
Q ss_pred HHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhcCChHHHHHHHhc
Q 039715 326 DAVELFCRMRQAFVAP-NQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSD-VFVSNALMDVYAKCGRMENSVELFAE 403 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~ 403 (805)
+|+.+++.|.+. +| ....|..+..++...|+.+.|.+.+...++.+ |+ ..+.+-+.......|++.+|...|.+
T Consensus 134 ~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 134 DALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 999999999985 45 45678889999999999999999999998764 44 33445566677778999999999877
Q ss_pred CCC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcH
Q 039715 404 SPK--RN-HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDV 479 (805)
Q Consensus 404 ~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 479 (805)
..+ |. .+.|+.|...+-.+|+..+|+..|++... +.|+.. .|..|...+...+.++.|...+.+..... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 544 33 46899999999999999999999999976 456644 78889999999999999999888877654 3456
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 039715 480 VVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSAC 555 (805)
Q Consensus 480 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~ 555 (805)
.++..|.-.|-.+|.+|-|+..+++..+. =...||.|..++...|+..+|...|.+.+. +.|+.. +.+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHH
Confidence 77888888899999999999999998743 367999999999999999999999999998 677654 889999999
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHHcCCHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSV-MIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a 632 (805)
...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+.-+++. .++|+. ..++.++..|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999999887 46675 467899999999999999999999866 678875 5899999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 633 RLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 633 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++.+++++.++|.-+.++..|+.+|...|...+|..
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 999999999999999999999999999999999987
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-17 Score=189.69 Aligned_cols=404 Identities=10% Similarity=-0.015 Sum_probs=257.1
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhH
Q 039715 250 KACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSID 326 (805)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~ 326 (805)
..+...|+++.|...|...++. .|+...|..+...|.+.|++++|...++...+. +...|..+..+|...|++++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555566666666555543 234455556666666666666666666655432 23346666666777777777
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 039715 327 AVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK 406 (805)
Q Consensus 327 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 406 (805)
|+.-|......+.. +......++..... ..+........+.. +.+...+..+.. |........+..-++...+
T Consensus 213 A~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 213 ALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 76666554432111 11111111111111 11222222222221 122222222222 2222122222221222111
Q ss_pred CCh---hhHHHHHHHH---HHcCChHHHHHHHHHHhhcC-CCCC-hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCc
Q 039715 407 RNH---VTWNTMIVGY---VQLGEVGKAMIMFSKMLEEQ-VPAT-EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMD 478 (805)
Q Consensus 407 ~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 478 (805)
.+. ..+..+...+ ...+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...+...++.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 111 1111111111 23467889999999888764 2343 3456666777788899999999999888764 334
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSA 554 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 554 (805)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|++.++ +.|+ ...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHH
Confidence 66788888899999999999999988763 3678899999999999999999999999998 5665 4467777788
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-------HH-HHHHHHHHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-------VM-IWRALLGACI 624 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-------~~-~~~~l~~~~~ 624 (805)
+...|++++|...|+...+. .| +...|..++.+|...|++++|++.|++. ...|+ .. .++..+..+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 88999999999999998843 45 4678889999999999999999999864 33332 11 1222223344
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..|++++|+..++++++++|++..++..|+.+|...|++++|.+
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 46999999999999999999999999999999999999999977
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-15 Score=164.02 Aligned_cols=543 Identities=12% Similarity=0.076 Sum_probs=285.4
Q ss_pred chHHHHHhccCCCCCcc-hHHHHHHHH--HcCCChhHHHHHHHHHHhC--CCCCCcchHHHHHHHHhccCCccchhhHHH
Q 039715 107 LPDATKLFDEMPERNTI-SFVTTIQGY--TVSSQFVEAVGLFSTLHRE--GHELNPFAFTAFLKVLVSMGWAELCPCVFA 181 (805)
Q Consensus 107 ~~~A~~~f~~~~~~~~~-~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 181 (805)
++.|...|..+.+.+.. ..-.|..|+ ...|++..|+.+|...... ...||+.. .+-.++.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 46677777666432111 112233333 3456777777777775542 23334321 22233456677777777777
Q ss_pred HHHHhCCCCchhhHHHHHHHHHhcCCHH---HHHHHHhhh-------------------ccccHHHHHHHHHHHHHCCCC
Q 039715 182 CVYKLGHDSNAFVGTALIDAFSVCGCVE---FARKVFDGL-------------------FNDCFEEALNFFSQMRAVGFK 239 (805)
Q Consensus 182 ~~~~~g~~~~~~~~~~li~~y~~~g~~~---~A~~~~~~~-------------------~~g~~~~A~~~~~~m~~~g~~ 239 (805)
...+... .++..+-.|--+-....+.+ .+..++... ..|+++.+..+...+...-..
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 6666542 12222222211111112211 111111111 334444444444444432211
Q ss_pred --CChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC---CcccHHHH
Q 039715 240 --PNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK---DVIPWSFM 314 (805)
Q Consensus 240 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~l 314 (805)
.-..+|-.+.+++-..|+++.|...|-...+.....-+..+-.|..+|.+.|+++.+...|+.+.+. +..+...|
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 0122355566666666777777666666655432222333445566666777777776666666432 23334444
Q ss_pred HHHHHhCC----ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHH----HhCCCccHHHHHHHHH
Q 039715 315 IARYAQTD----LSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVV----RVGLLSDVFVSNALMD 386 (805)
Q Consensus 315 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~Li~ 386 (805)
...|...+ ..+.|..++.+..+.- .-|...|..+...+.. ++.......+..+. ..+-.+.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 44555443 2344444444444331 2233444444443332 22222244333322 3344455666677777
Q ss_pred HHHhcCChHHHHHHHhcCCCC-------Ch------hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHH
Q 039715 387 VYAKCGRMENSVELFAESPKR-------NH------VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLR 452 (805)
Q Consensus 387 ~y~~~g~~~~A~~~f~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 452 (805)
.+...|++++|...|+..... |. .+-..+...+-..++.+.|.++|...... .|.-+ .|..++.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 777777777777666553221 11 11223344445556666677777766654 23333 2333332
Q ss_pred HHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHhHHHHHHHHHHh-----
Q 039715 453 ACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND-----WNEVSWNAMISGYSM----- 522 (805)
Q Consensus 453 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~----- 522 (805)
.....+...+|...+..+...+ ..++.+++.+.+.|.+...+..|.+-|+.+.+ .|..+.-+|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 2223355666666666665543 44556666666677777777666665544432 244444444444432
Q ss_pred -------CCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 039715 523 -------HGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRA 594 (805)
Q Consensus 523 -------~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 594 (805)
.+..++|+++|.+.+.. .| |...-+.+.-.++..|++.+|+.+|.++.+.. .....+|-.+...|..+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHH
Confidence 23456677777777763 33 44455666666777777777777777776542 23345666777777777
Q ss_pred CCHHHHHHHHHcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 595 GHLDKAAKLIEGI----PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 595 g~~~eA~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
|++-.|+++|+.. --+.++.+...|..++...|.+.+|.+++..+..+.|.++.....++-+..+.+
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 7777777777644 113456667777777777777777777777777777777776666666555443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-15 Score=165.11 Aligned_cols=602 Identities=12% Similarity=0.075 Sum_probs=409.3
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHHHHHHc-CC---CCCcc---hHHHHHHHHHhCC-----------CchHHHHHhcc
Q 039715 55 NSHSYATSLQSCIQNDDLQTAMTIHCQVLKK-GN---CLDLF---ATNVLLNVYVKLN-----------RLPDATKLFDE 116 (805)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~---~~~~~---~~~~ll~~~~~~g-----------~~~~A~~~f~~ 116 (805)
.-.+|..+...|...|..++...+.+..... +. .+... .++.|..-|+..+ -+..|..+|+.
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 3467888888899999999999887655411 11 11111 1222222222221 23445555554
Q ss_pred CCCCCcchHHHHH---HHHHcCCC--hhHHHHHHHHHHhCCCCCCcchHHHHHHHHh--ccCCccchhhHHHHHHHhC--
Q 039715 117 MPERNTISFVTTI---QGYTVSSQ--FVEAVGLFSTLHREGHELNPFAFTAFLKVLV--SMGWAELCPCVFACVYKLG-- 187 (805)
Q Consensus 117 ~~~~~~~~~~~li---~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g-- 187 (805)
.-.-+...+..++ ..|...|. .+.|...|....+. .|+.. ...+.++|. ..+++..|..+|..++...
T Consensus 120 A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~--sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~ 196 (1018)
T KOG2002|consen 120 ADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQ--SPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPA 196 (1018)
T ss_pred HHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhh--CCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcc
Confidence 3222222222211 12334444 48899999888874 34433 344667766 5679999999999977664
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHhhh----------------------ccccHHHHHHHHHHHHHCCCCCChhhH
Q 039715 188 HDSNAFVGTALIDAFSVCGCVEFARKVFDGL----------------------FNDCFEEALNFFSQMRAVGFKPNNFTF 245 (805)
Q Consensus 188 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~----------------------~~g~~~~A~~~~~~m~~~g~~p~~~t~ 245 (805)
..||+.+.. -..+.++|+.+.|...|.+. ....+..++.++...-... .-|++..
T Consensus 197 ~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l 273 (1018)
T KOG2002|consen 197 CKADVRIGI--GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVAL 273 (1018)
T ss_pred cCCCccchh--hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHH
Confidence 356654433 35567899999999999877 2233445555555543332 2245567
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCCCCc--HhHHHHHHHHHHcCCChHHHHHHHhhCCCC---C-cccHHHHHHHHH
Q 039715 246 AFVLKACLGLDTIRVAKSAHGCALKTCYEMD--LYVAVALLDLYTKSGEISNARRIFEEMPKK---D-VIPWSFMIARYA 319 (805)
Q Consensus 246 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~-~~~~~~li~~~~ 319 (805)
+.|..-+.-.|++..+..+...+++...... ...+-.+..+|-..|+++.|...|.+.... + +.++--+...|.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 7777778888999999998888887652221 224556788899999999999998876543 2 345667888899
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC----CchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCh-
Q 039715 320 QTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATME----GLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRM- 394 (805)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~- 394 (805)
..|+.+.+...|+..... .+-+..|...+...|+..+ ..+.|..+.....+.- +.|...|-.+..+|-...-+
T Consensus 354 ~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH
Confidence 999999999999998875 2334456666666666654 4566777777776654 56677777777776554332
Q ss_pred -----HHHHHHHhc-CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhc---CCCCCh-----h-hHHHHHHHHhccCC
Q 039715 395 -----ENSVELFAE-SPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE---QVPATE-----V-TYSSVLRACASLAA 459 (805)
Q Consensus 395 -----~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~-t~~~ll~a~~~~~~ 459 (805)
..|..++.. +....+...|.+...+...|++++|...|.+.... ...+|. . +-..+.......++
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 233333332 22345667889999999999999999999988654 223333 1 23344555667789
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLM 536 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 536 (805)
.+.|.++|..+++.. +.-+..|-.|+-+--..+...+|...+.... ..|+..|.-+...+.....+..|.+-|...
T Consensus 512 ~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 512 TEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 999999999998864 2223333334433344467778888888776 457888998998999999999999877777
Q ss_pred HHcC-CCCCHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 039715 537 QQRG-WRPNNLTFVGVLSACSN------------GGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAK 602 (805)
Q Consensus 537 ~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~ 602 (805)
.+.- ..+|..+..+|.+.|.. .+..+.|+++|.++++ ..| +...-+-++-.++..|++.+|.+
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHH
Confidence 6532 23576777777765542 3456788888888773 345 67778888999999999999999
Q ss_pred HHHcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 603 LIEGIP--FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDF--EPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 603 ~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|.+.. ...+..+|-++...|...|++-.|+++|+..++. ..+++.....|+.++.+.|+|.+|.+
T Consensus 668 IFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 668 IFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred HHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 998773 2234568999999999999999999999999873 34677888999999999999999988
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=180.96 Aligned_cols=294 Identities=14% Similarity=0.107 Sum_probs=216.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCcc---HHHHHHHHHH
Q 039715 311 WSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSD---VFVSNALMDV 387 (805)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~ 387 (805)
.......+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3334455677888889999999988753 22344677777777888888888888887776532221 2456666777
Q ss_pred HHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHH
Q 039715 388 YAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGM 464 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 464 (805)
|.+.|++++|..+|+++.+ .+..+++.++..|.+.|++++|++.|+++.+.+..++...
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------ 178 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------ 178 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------
Confidence 7777777777777776654 3455677777777777777777777777765432211100
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 039715 465 QVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW 541 (805)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 541 (805)
....+..+...|.+.|++++|.+.|+++.+. +...+..++..|.+.|++++|+++|+++.+.
T Consensus 179 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 243 (389)
T PRK11788 179 -------------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-- 243 (389)
T ss_pred -------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 1123456777788889999999998887632 4667888889999999999999999999884
Q ss_pred CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHH
Q 039715 542 RPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRA 618 (805)
Q Consensus 542 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ 618 (805)
.|+ ..++..+..++...|++++|...++.+.+ ..|+...+..++..|.+.|++++|.++++++ ...|+...++.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~ 320 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHR 320 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 344 35678888899999999999999999884 3577777788999999999999999999865 55789888988
Q ss_pred HHHHHHH---cCCHHHHHHHHHHHhc
Q 039715 619 LLGACII---HNNVEIGRLSAQHILD 641 (805)
Q Consensus 619 l~~~~~~---~g~~~~a~~~~~~~~~ 641 (805)
++..+.. +|+.++++..++++++
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHH
Confidence 8877664 5688888888887765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-16 Score=184.37 Aligned_cols=398 Identities=9% Similarity=-0.018 Sum_probs=272.2
Q ss_pred hHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC---CCcccHHHHHHHHHh
Q 039715 244 TFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK---KDVIPWSFMIARYAQ 320 (805)
Q Consensus 244 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 320 (805)
-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... .+...+..++..+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445566677888889988888887633 44555688888889999999999999998543 345567788888899
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 039715 321 TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVEL 400 (805)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 400 (805)
.|++++|+..+++..+. .|+...+..+..++...|+.+.|...++.+++.. +.+..++..+..++...|..++|.+.
T Consensus 96 ~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999999999998875 3433337777777888999999999999999876 44556666788888888999999999
Q ss_pred HhcCCCCChh--------hHHHHHHHHH-----HcCCh---HHHHHHHHHHhhc-CCCCChh-hHH----HHHHHHhccC
Q 039715 401 FAESPKRNHV--------TWNTMIVGYV-----QLGEV---GKAMIMFSKMLEE-QVPATEV-TYS----SVLRACASLA 458 (805)
Q Consensus 401 f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~ 458 (805)
++.... ++. ....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|
T Consensus 173 l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 173 IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 887765 211 1112222221 12233 6788888888754 2233221 111 1133445667
Q ss_pred CchhHHHHHHHHHHcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCC-------HhHHHHHHHHHHhCCChHHHH
Q 039715 459 ALEPGMQVHCLTVKANYD-MDVVVANALIDMYAKCGSITDARLVFDMMNDWN-------EVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~ 530 (805)
+.++|+..++.+.+.+.+ |+ .....+...|...|++++|+..|+++.+.+ ...+..+..++.+.|++++|+
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 888888888888776532 22 122235667888888888888888775332 234555666778888888888
Q ss_pred HHHHHHHHcC-----------CCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC
Q 039715 531 KVFDLMQQRG-----------WRPNN---LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG 595 (805)
Q Consensus 531 ~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 595 (805)
.+++++.+.. -.|+. ..+..+...+...|++++|+..++++... .| +...+..++.++.+.|
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcC
Confidence 8888887642 01231 13345555677778888888888887743 34 4667777788888888
Q ss_pred CHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 039715 596 HLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 596 ~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
++++|++.+++. ...|| ...+..++..+...|++++|+..++++++..|+++.+.
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 888888888765 34554 45666666677777888888888888888888776543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-16 Score=182.25 Aligned_cols=350 Identities=11% Similarity=-0.002 Sum_probs=274.3
Q ss_pred cCCChHHHHHHHhhCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHH
Q 039715 289 KSGEISNARRIFEEMPKK------DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLG 362 (805)
Q Consensus 289 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 362 (805)
+..+++.-.-.|..-++. +..-...++..+.+.|++++|+.+++..+.....+ ...+..++.++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 455666655566655542 22335567788889999999999999988764443 33444555666779999999
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 039715 363 NQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQ 439 (805)
Q Consensus 363 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 439 (805)
...++.+++.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999999876 55567788889999999999999999988654 356688899999999999999999999887654
Q ss_pred CCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHH
Q 039715 440 VPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAM 516 (805)
Q Consensus 440 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 516 (805)
|+.......+..+...|++++|...+..+.+....++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333322222345778899999999999888765444455556667888999999999999998863 367788899
Q ss_pred HHHHHhCCChHH----HHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHH
Q 039715 517 ISGYSMHGLSAE----VLKVFDLMQQRGWRPNN-LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSL 590 (805)
Q Consensus 517 i~~~~~~g~~~~----A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 590 (805)
...|...|++++ |+..|++..+ +.|+. ..+..+...+...|++++|...+++... ..|+ ...+..+..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 999999999986 8999999998 56754 4788888889999999999999999884 4564 5677788999
Q ss_pred HHhcCCHHHHHHHHHcCC-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 039715 591 LGRAGHLDKAAKLIEGIP-FQPSVMI-WRALLGACIIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~~-~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
|.+.|++++|.+.++++. ..|+... +..+..++...|+.++|+..++++++..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999998773 4566544 44456778899999999999999999999764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-17 Score=177.33 Aligned_cols=293 Identities=10% Similarity=0.019 Sum_probs=199.5
Q ss_pred HHHHHcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---hhHHHHHHHHHhccC
Q 039715 284 LDLYTKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPN---QFTFVSVLQACATME 357 (805)
Q Consensus 284 i~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~ 357 (805)
...+...|++++|...|.++.+. +..+|..+...+...|++++|+..++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33467789999999999999754 344688899999999999999999999987543222 245778888899999
Q ss_pred CchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCC--------hhhHHHHHHHHHHcCChHHHH
Q 039715 358 GLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRN--------HVTWNTMIVGYVQLGEVGKAM 429 (805)
Q Consensus 358 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~--------~~~~~~li~~~~~~g~~~~A~ 429 (805)
+++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998764 4567889999999999999999999999876432 124566778888999999999
Q ss_pred HHHHHHhhcCCCCC-hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC--
Q 039715 430 IMFSKMLEEQVPAT-EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN-- 506 (805)
Q Consensus 430 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-- 506 (805)
..|+++.+.. |+ ...+..+...+.+.|++++|.+++..+.+.+......+++.++.+|.+.|++++|.+.++++.
T Consensus 201 ~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998753 33 334555555666666666666666666554322223445555555666666666665555544
Q ss_pred CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCCChH
Q 039715 507 DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSN---GGLLEQGEAYFKSMVANYGIEPCIE 582 (805)
Q Consensus 507 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~ 582 (805)
.|+...+..++..+.+.|++++|+.+|+++.+ ..|+..++..++..+.. .|+.+++...++.|.++ ++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 23333445555555555555566655555555 24555555555544332 33555555555555544 4444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-16 Score=176.36 Aligned_cols=410 Identities=12% Similarity=-0.010 Sum_probs=283.0
Q ss_pred cccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHH
Q 039715 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRI 299 (805)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 299 (805)
.|++++|+..|++.+. +.|+...|..+..++...|+++.|...+...++.. +.+...+..+...|...|++++|..-
T Consensus 140 ~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred cCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445555555556554 45777889999999999999999999999999875 33566888899999999999999988
Q ss_pred HhhCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCc
Q 039715 300 FEEMPKKDVI---PWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLS 376 (805)
Q Consensus 300 f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 376 (805)
|......+.. ....++..+.. ..+........+.. .++...+..+ ..+......+....-+....+ ..+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~ 288 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNE--LDE 288 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhcccc--ccc
Confidence 7655322211 11111111111 22333333333321 1111122212 112111111111111111111 011
Q ss_pred cH-HHHHHHHHHH---HhcCChHHHHHHHhcCCCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC-hh
Q 039715 377 DV-FVSNALMDVY---AKCGRMENSVELFAESPKR------NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPAT-EV 445 (805)
Q Consensus 377 ~~-~~~~~Li~~y---~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 445 (805)
+. ..+..+...+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.++. .|+ ..
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHH
Confidence 10 0111111111 2346789999999876532 4457888888999999999999999999875 455 44
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHh
Q 039715 446 TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSM 522 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 522 (805)
.|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 77788888899999999999999998875 45678899999999999999999999998864 356788889999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh-H-------HHHHHHHHHHh
Q 039715 523 HGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI-E-------HYTSMVSLLGR 593 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~li~~~~~ 593 (805)
.|++++|+..|++.++ ..|+ ...+..+..++...|++++|+..|+.... +.|+. . .++.....+..
T Consensus 446 ~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 446 EGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999988 4565 56788888899999999999999999874 44431 1 12222233445
Q ss_pred cCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 594 AGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 594 ~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.|++++|.+++++. ...|+ ...+..++..+...|++++|+..+++++++.+....
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 79999999999875 45565 457999999999999999999999999999886444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-16 Score=180.08 Aligned_cols=385 Identities=8% Similarity=0.005 Sum_probs=291.5
Q ss_pred CcHhHHHHHHHHHHcCCChHHHHHHHhhCCC-C--CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHH
Q 039715 275 MDLYVAVALLDLYTKSGEISNARRIFEEMPK-K--DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPN-QFTFVSVL 350 (805)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 350 (805)
.+.....-.+......|+.++|++++.+... . +...+..+...+...|++++|+.+|++..+. .|+ ......+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3444555667778889999999999998764 2 3334899999999999999999999998875 344 45566777
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHH
Q 039715 351 QACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGK 427 (805)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 427 (805)
..+...|++++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ .+...+..+...+...|..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 78899999999999999999874 45556 88899999999999999999998664 255667778888999999999
Q ss_pred HHHHHHHHhhcCCCCChh------hHHHHHHHHh-----ccCCc---hhHHHHHHHHHHc-CCCCcH--hHHHH---HHH
Q 039715 428 AMIMFSKMLEEQVPATEV------TYSSVLRACA-----SLAAL---EPGMQVHCLTVKA-NYDMDV--VVANA---LID 487 (805)
Q Consensus 428 A~~~~~~m~~~g~~p~~~------t~~~ll~a~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~--~~~~~---li~ 487 (805)
|++.+++... .|+.. ....++.... ..+++ +.|.+.++.+.+. ...|+. ..... .+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9999987654 33320 1111222221 11223 6677777777754 222222 11111 123
Q ss_pred HHHhcCCHHHHHHHhhhcCCCC---Hh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcC
Q 039715 488 MYAKCGSITDARLVFDMMNDWN---EV-SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-----NLTFVGVLSACSNG 558 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~ 558 (805)
++...|++++|++.|+++.+.+ +. .-..+...|...|++++|+..|+++.+. .|. ......+..++...
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhc
Confidence 4457799999999999998542 11 1222577899999999999999998874 333 23456667788999
Q ss_pred CCHHHHHHHHHHHHHhcC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 559 GLLEQGEAYFKSMVANYG----------IEPC---IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 559 g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
|++++|.++++.+..... -.|+ ...+..++.++...|++++|++.++++ ...| +...|..++..+
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999885421 1122 234567788999999999999999986 2334 567899999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|+.++|+..++++++++|+++..+..++.++...|+|++|.+
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999999999999987
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-16 Score=174.32 Aligned_cols=316 Identities=8% Similarity=-0.017 Sum_probs=259.9
Q ss_pred hhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHH
Q 039715 343 QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGY 419 (805)
Q Consensus 343 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 419 (805)
......++..+.+.|+++.|..+++.++.....+ ......++..+...|++++|...|+++.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667788899999999999999999876444 44555566777789999999999999764 3566888999999
Q ss_pred HHcCChHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 039715 420 VQLGEVGKAMIMFSKMLEEQVPAT-EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDA 498 (805)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 498 (805)
.+.|++++|+..|++.... .|+ ...+..+...+...|+.++|...+..+......+ ...+..+. .+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHHH-HHHHcCCHHHH
Confidence 9999999999999999875 454 4467788889999999999999999887765333 33333333 47889999999
Q ss_pred HHHhhhcCCC----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHH----HHHHHH
Q 039715 499 RLVFDMMNDW----NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQ----GEAYFK 569 (805)
Q Consensus 499 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~ 569 (805)
...++.+.+. +...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999987643 3334555677889999999999999999984 454 4567778888999999986 899999
Q ss_pred HHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 570 SMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 570 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
++.. +.| +...+..++.+|.+.|++++|...+++. ...|+ ...+..+..++...|++++|+..++++++..|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9884 456 4678999999999999999999999876 34454 5678889999999999999999999999999998
Q ss_pred cchHHHHHHHHHhcCChHHHhh
Q 039715 647 EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 647 ~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+..+..++.+|...|++++|.+
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHH
Confidence 8878888999999999999998
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-14 Score=163.12 Aligned_cols=422 Identities=11% Similarity=0.034 Sum_probs=301.3
Q ss_pred ccccHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHH
Q 039715 219 FNDCFEEALNFFSQMRAVGFKPNN--FTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNA 296 (805)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 296 (805)
++|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|...++..+.. -........++...|...|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5677778888888887653 443 233 7777788889999999999988811 122233444446688899999999
Q ss_pred HHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 039715 297 RRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVG 373 (805)
Q Consensus 297 ~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 373 (805)
.++|+++.+. +...+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++++++..
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999999764 3445777888999999999999999999774 5666666444444445666666999999999886
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCC-Chhh--H--HHHHHHHHH---------cCC---hHHHHHHHHHHh
Q 039715 374 LLSDVFVSNALMDVYAKCGRMENSVELFAESPKR-NHVT--W--NTMIVGYVQ---------LGE---VGKAMIMFSKML 436 (805)
Q Consensus 374 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~--~--~~li~~~~~---------~g~---~~~A~~~~~~m~ 436 (805)
+.+...+..++....+.|-...|.++..+-+.- +... | ...+.-.++ ..+ .+.|+.-++.+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 567778888899999999999999988876531 1111 1 000111111 122 344555566655
Q ss_pred hc-CCCCChh-h----HHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC--
Q 039715 437 EE-QVPATEV-T----YSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW-- 508 (805)
Q Consensus 437 ~~-g~~p~~~-t----~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-- 508 (805)
.. +..|... - ..--+-++...++..++++.++.+...+.+....+-.++.++|...+++++|+.+|..+...
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 42 2223221 1 22345567788889999999999998887666778888999999999999999999887532
Q ss_pred -------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-----------CC--CHH-HHHHHHHHHHcCCCHHHHHHH
Q 039715 509 -------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW-----------RP--NNL-TFVGVLSACSNGGLLEQGEAY 567 (805)
Q Consensus 509 -------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p--~~~-t~~~ll~a~~~~g~~~~a~~~ 567 (805)
+......|.-+|...+++++|..+++++.+.-. .| |-. .+..+...+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233356788888999999999999999887311 12 222 234455667888999999999
Q ss_pred HHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 568 FKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 568 ~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
++.+.. ..| |......+.+++...|++.+|++.++.+ ...|+ ..+...++.++...|++++|....+.+++..|
T Consensus 439 le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 439 LEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 998873 355 7788888899999999999999998765 24554 45666777777888999999999999999999
Q ss_pred CCcchH
Q 039715 645 EDEATH 650 (805)
Q Consensus 645 ~~~~~~ 650 (805)
+++..-
T Consensus 516 e~~~~~ 521 (822)
T PRK14574 516 EDIPSQ 521 (822)
T ss_pred CchhHH
Confidence 887543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-14 Score=139.41 Aligned_cols=319 Identities=14% Similarity=0.146 Sum_probs=244.7
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH--hCCCch-------------------------
Q 039715 56 SHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYV--KLNRLP------------------------- 108 (805)
Q Consensus 56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~~~------------------------- 108 (805)
..+=+++++. ...|.+.++.-+++.|...|.+.+..+--.|+..-+ ...++.
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4455566553 456789999999999999998877766555554432 221211
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCC
Q 039715 109 DATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGH 188 (805)
Q Consensus 109 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 188 (805)
-|.-+|+..| +...+|.+||.|.++-...+.|.++|++-.....+.+..+||.+|.+-.- ..++.+...|+....
T Consensus 195 vAdL~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 195 VADLLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKM 269 (625)
T ss_pred HHHHHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhc
Confidence 1222333333 35568999999999999999999999999998899999999999987653 334889999999999
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHH-HHHHHHH
Q 039715 189 DSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRV-AKSAHGC 267 (805)
Q Consensus 189 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~ 267 (805)
.||..++|++++..++.|+++.|++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..+...
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~a-----------alqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKA-----------ALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHH-----------HHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 99999999999999999999998885 56789999999999999999999999999888754 3344444
Q ss_pred HHHh--C--C----CCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC--------C---cccHHHHHHHHHhCCChhHHH
Q 039715 268 ALKT--C--Y----EMDLYVAVALLDLYTKSGEISNARRIFEEMPKK--------D---VIPWSFMIARYAQTDLSIDAV 328 (805)
Q Consensus 268 ~~~~--g--~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~ 328 (805)
+... | + +.|...+..-++.+.+..+.+-|.++-.-.... + ..-|..+....++....+.-+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 1 2 234555666777777888988888876655432 1 122667788889999999999
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 039715 329 ELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKC 391 (805)
Q Consensus 329 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 391 (805)
..|+.|.-.-.-|+..+...++++....+.++...+++..++..|.........-++...++.
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 999999888788999999999999999999999999999999888655555544444444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-14 Score=160.26 Aligned_cols=408 Identities=10% Similarity=-0.004 Sum_probs=301.6
Q ss_pred HhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHH-HH--HHHHHhCCChhHH
Q 039715 251 ACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWS-FM--IARYAQTDLSIDA 327 (805)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~l--i~~~~~~g~~~~A 327 (805)
...+.|+++.|...+.++++..+.....++ .++..+...|+.++|+..+++...++...+. .+ ...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345789999999999999988644333444 8888899999999999999999876544433 33 4578888999999
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 039715 328 VELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKR 407 (805)
Q Consensus 328 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 407 (805)
+++|+++.+.... +...+..++..+...++.++|.+.++.+.+.. |+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999886432 34566677778899999999999999998764 44555555555555567776799999987653
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHH-----------HHHHHH-----hccCC---chhHHH
Q 039715 408 ---NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYS-----------SVLRAC-----ASLAA---LEPGMQ 465 (805)
Q Consensus 408 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-----------~ll~a~-----~~~~~---~~~a~~ 465 (805)
+...+..+..++.+.|-...|+++..+- |+.++-. ..++.- ....+ .+.+..
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 5567788888999999999998777653 3222211 111110 01112 233444
Q ss_pred HHHHHHHc-CC-CCcHhH-HH---HHHHHHHhcCCHHHHHHHhhhcCCC----CHhHHHHHHHHHHhCCChHHHHHHHHH
Q 039715 466 VHCLTVKA-NY-DMDVVV-AN---ALIDMYAKCGSITDARLVFDMMNDW----NEVSWNAMISGYSMHGLSAEVLKVFDL 535 (805)
Q Consensus 466 ~~~~~~~~-~~-~~~~~~-~~---~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~ 535 (805)
-++.+... +- ++.... .. -.+-++.+.|+..++++.|+.+... -..+--++..+|...+++++|+.+|++
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444431 11 222111 22 3344677889999999999999843 234556788999999999999999999
Q ss_pred HHHcCC----CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC----------CCCCh---HHHHHHHHHHHhcCCH
Q 039715 536 MQQRGW----RP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYG----------IEPCI---EHYTSMVSLLGRAGHL 597 (805)
Q Consensus 536 m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~~---~~~~~li~~~~~~g~~ 597 (805)
+..... .| +......|.-++...+++++|..+++.+.+... -.|+. ..+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 976431 12 333357788899999999999999999986311 01222 4455677888999999
Q ss_pred HHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 598 DKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 598 ~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+|++.++++ ..- -|..++..+...++..|+..+|+..++.+..++|++......++..+...|+|++|.+
T Consensus 433 ~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 433 PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999987 223 4788999999999999999999999999999999999999999999999999999976
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-10 Score=120.86 Aligned_cols=577 Identities=11% Similarity=0.046 Sum_probs=372.6
Q ss_pred CCChhhHHHHHHHh-----hcCCChHHHHHHHHHHHHcCCC-CCcchHHHHHHHHHhCCCchHHHHHhccCC---CCCcc
Q 039715 53 EFNSHSYATSLQSC-----IQNDDLQTAMTIHCQVLKKGNC-LDLFATNVLLNVYVKLNRLPDATKLFDEMP---ERNTI 123 (805)
Q Consensus 53 ~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~ 123 (805)
.-|+..|.+=|.+- ...++...|+.++..+.+..+. |+-.+..+-+. -..|++..|+.+..+=- .++..
T Consensus 243 vvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLE--EvagKl~~Ar~~I~~GCe~cprSeD 320 (913)
T KOG0495|consen 243 VVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLE--EVAGKLSVARNLIMKGCEECPRSED 320 (913)
T ss_pred ccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH--HHhhHHHHHHHHHHHHHhhCCchHH
Confidence 34455565555542 2345778888888888888763 44344333333 45677777777664321 12223
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcc-hH---------------------------HHHHHHHhccCCccc
Q 039715 124 SFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPF-AF---------------------------TAFLKVLVSMGWAEL 175 (805)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---------------------------~~ll~~~~~~~~~~~ 175 (805)
.|---|+ -...+.|..+.....+ .-|+.+ .| ..|-++.....+.+.
T Consensus 321 vWLeaiR----Lhp~d~aK~vvA~Avr--~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~d 394 (913)
T KOG0495|consen 321 VWLEAIR----LHPPDVAKTVVANAVR--FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPED 394 (913)
T ss_pred HHHHHHh----cCChHHHHHHHHHHHH--hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHH
Confidence 3322111 1122223333333222 112211 11 112233333344444
Q ss_pred hhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCC
Q 039715 176 CPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGL 255 (805)
Q Consensus 176 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 255 (805)
|+-++....+.- +.+. -|.-+|++..-++.|++++. +.++. +.-+...|.+....=-..
T Consensus 395 arilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLN---------------kaRe~-iptd~~IWitaa~LEE~n 453 (913)
T KOG0495|consen 395 ARILLERAVECC-PQSM----DLWLALARLETYENAKKVLN---------------KAREI-IPTDREIWITAAKLEEAN 453 (913)
T ss_pred HHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHH---------------HHHhh-CCCChhHHHHHHHHHHhc
Confidence 444444444432 1111 22333444444454555444 33332 333444555444444455
Q ss_pred CCHHHHHHHHHHH----HHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC-----C-CcccHHHHHHHHHhCCChh
Q 039715 256 DTIRVAKSAHGCA----LKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK-----K-DVIPWSFMIARYAQTDLSI 325 (805)
Q Consensus 256 ~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~-~~~~~~~li~~~~~~g~~~ 325 (805)
|+.+....+.+.- ...|...+..-|-.=...+-+.|..-.+..+...... . --.+|+.-...|.+.+.++
T Consensus 454 gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 454 GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH
Confidence 6665555554432 3345555555555545555555555555444443321 1 2345777777777888888
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC
Q 039715 326 DAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP 405 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 405 (805)
-|..+|...++. .+-+...|......--..|..+....+++.++..- +.....|-....-+-..|++..|+.++...-
T Consensus 534 carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 534 CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 888888777664 23344455555555556677788888888877764 3445566666777777899999888877644
Q ss_pred C---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHH
Q 039715 406 K---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVA 482 (805)
Q Consensus 406 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 482 (805)
+ .+...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..---+++.++|.++++..++. ++.-...|
T Consensus 612 ~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~ 688 (913)
T KOG0495|consen 612 EANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLW 688 (913)
T ss_pred HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHH
Confidence 3 25667888888888899999999999988764 566666655555556678889999999888876 35556788
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 039715 483 NALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGG 559 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 559 (805)
..+...|-+.++++.|.+.|..-.+. .+-.|-.+...--+.|....|..+|++..-.+ +-|...|...+..-.+.|
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAG 767 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcC
Confidence 88999999999999999998877643 45678888888888899999999999988753 225667888888889999
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039715 560 LLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHI 639 (805)
Q Consensus 560 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 639 (805)
+.++|..+..+.+++ .+.+...|..-|.+..+.++-..+.+.+++.. .|+.+.-+....+....+++.|...|+++
T Consensus 768 n~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 768 NKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred CHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888865 44466788888889888888888888888775 56666677777788889999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 640 LDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 640 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++|++..++..+-..+...|.=++-.+
T Consensus 844 vk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 844 VKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred HccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999996655544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-10 Score=119.22 Aligned_cols=493 Identities=12% Similarity=0.043 Sum_probs=387.1
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHH
Q 039715 132 YTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFA 211 (805)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 211 (805)
-+.-.+.+.|.-++.+..+ +-|.. .-|.-++++...++.|+.++....+. ++.+..+|.+-...--..|..+..
T Consensus 386 AVelE~~~darilL~rAve--ccp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVE--CCPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHhccChHHHHHHHHHHHH--hccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHH
Confidence 3444566778888888887 33332 34556777888889999999888765 567888888877777778888877
Q ss_pred HHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCc--HhHHHHHHHHHHc
Q 039715 212 RKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMD--LYVAVALLDLYTK 289 (805)
Q Consensus 212 ~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~ 289 (805)
.++.++- +.++...|+..+..-|..=..+|-..|..-....+...++..|++.. ..+|+.-...+.+
T Consensus 460 ~kii~rg-----------l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 460 EKIIDRG-----------LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHHHHH-----------HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 7777632 44567788999988888888899999999999999998888887543 4588888899999
Q ss_pred CCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHH
Q 039715 290 SGEISNARRIFEEMPK---KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIH 366 (805)
Q Consensus 290 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 366 (805)
.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++.... .+-....+....+-.-..|++..|+.++
T Consensus 529 ~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred cchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999987764 34556887777777789999999999999875 2223444545555566779999999999
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh
Q 039715 367 SLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK--RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE 444 (805)
Q Consensus 367 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 444 (805)
..+.+.. +.+..+|-+-+..-.....++.|+.+|.+... +....|.--+..---.+..++|++++++.++. -|+.
T Consensus 608 ~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f 684 (913)
T KOG0495|consen 608 DQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDF 684 (913)
T ss_pred HHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCch
Confidence 9999877 44788999999999999999999999987553 45566766666666678999999999998874 5665
Q ss_pred h-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHH
Q 039715 445 V-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGY 520 (805)
Q Consensus 445 ~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 520 (805)
. .|..+.+.+.+.++++.|+..|..-.+. .+..+..|-.|.+.--+.|.+-.|+.+|++..- .|...|-..|..-
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRME 763 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 5 6777778888899999999888765554 245677899999999999999999999998863 3788999999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 600 (805)
.+.|+.+.|..+..+.++. ++.+...|..-|...-+.++-......+ . ..+-|+.+.-.+..++-...+++.|
T Consensus 764 lR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL---k---kce~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL---K---KCEHDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH---H---hccCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998885 4445556766666666666644443332 2 3456777788888999999999999
Q ss_pred HHHHHcC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 601 AKLIEGI-PFQPSV-MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 601 ~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
.+.|++. ...||. .+|--+...+.+||.-+.-.+++.+...-+|.....+...
T Consensus 837 r~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 9999976 445654 5888899999999999999999999999999775544443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-11 Score=132.71 Aligned_cols=540 Identities=13% Similarity=0.065 Sum_probs=301.6
Q ss_pred hCCCchHHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHhccCCccchhh
Q 039715 103 KLNRLPDATKLFDEMPE---RNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELN-PFAFTAFLKVLVSMGWAELCPC 178 (805)
Q Consensus 103 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 178 (805)
..|++++|.+++.++.. ++...|.+|...|-+.|+.++++..+-.... +.|. ...|..+-....+.|++..|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 34999999999988764 4566899999999999998888766544433 4454 4577788888888899999999
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHH----HHHHHhhC
Q 039715 179 VFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFA----FVLKACLG 254 (805)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~ 254 (805)
.+..+++... ++....---...|-+.|+...|..-|. ++.......|..-+. .++..+..
T Consensus 229 cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~---------------~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 229 CYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFL---------------QLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHH---------------HHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 9999988873 344333344556666666655544444 444433222222222 22334444
Q ss_pred CCCHHHHHHHHHHHHHhC-CCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC----CCcccH------------------
Q 039715 255 LDTIRVAKSAHGCALKTC-YEMDLYVAVALLDLYTKSGEISNARRIFEEMPK----KDVIPW------------------ 311 (805)
Q Consensus 255 ~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~------------------ 311 (805)
.++-+.|.+.++.....+ -..+...++.++.+|.+....+.|......+.. +|..-|
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 555566666666555522 233445666777777777777777666655533 221111
Q ss_pred ----H----HHHHHHHhCCChhHHHHHHHHHHHCC--CCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHH
Q 039715 312 ----S----FMIARYAQTDLSIDAVELFCRMRQAF--VAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVS 381 (805)
Q Consensus 312 ----~----~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 381 (805)
+ -+.-++......+....+........ +.-+...|.-+..++.+.|.+.+|..++..+.......+..+|
T Consensus 373 ~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 373 ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 1 11222333333333333333333333 2333445666666666666666666666666665544456666
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhh--------cCCCCChhhHHHH
Q 039715 382 NALMDVYAKCGRMENSVELFAESPKR---NHVTWNTMIVGYVQLGEVGKAMIMFSKMLE--------EQVPATEVTYSSV 450 (805)
Q Consensus 382 ~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~l 450 (805)
-.+..+|...|..++|.+.|+.+..- +...--+|-..|.+.|+.++|.+.+..+.. .+..|+.......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 66666666666666666666664432 222333444556666666666666666532 1123333333344
Q ss_pred HHHHhccCCchhHHHHHHHHHHcC-----CCCc-----------------HhHHHHHHHHHHhcCCHHHHHHHhhhc---
Q 039715 451 LRACASLAALEPGMQVHCLTVKAN-----YDMD-----------------VVVANALIDMYAKCGSITDARLVFDMM--- 505 (805)
Q Consensus 451 l~a~~~~~~~~~a~~~~~~~~~~~-----~~~~-----------------~~~~~~li~~y~~~g~~~~A~~~~~~~--- 505 (805)
...+.+.|+.++-..+-..++... +-|+ ......++.+-.+.++.....+-...-
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 444555555555444433333311 0000 001111122222222211111111000
Q ss_pred -----CCCCHhHH----HHHHHHHHhCCChHHHHHHHHHHHHcCCC--CCHH--HH-HHHHHHHHcCCCHHHHHHHHHHH
Q 039715 506 -----NDWNEVSW----NAMISGYSMHGLSAEVLKVFDLMQQRGWR--PNNL--TF-VGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 506 -----~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
..-...-| .-++..+++.+++++|+.+...+.+..+. ++.. .+ ...+.++...+++.+|..+++.|
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 00012223 34567888999999999999888774322 2221 22 23445667889999999999999
Q ss_pred HHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhccCCC
Q 039715 572 VANYGIEPC---IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGA--CIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 572 ~~~~~~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
...++...+ ...|++....+.+.|+-.-=..++... ..+|+....-.++.+ ....+.+.-|+..+-++....|+
T Consensus 693 i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd 772 (895)
T KOG2076|consen 693 ITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD 772 (895)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC
Confidence 876554443 345665556666666544444454433 223332111122222 34567788899999999999999
Q ss_pred CcchHHHHHHHHHhc
Q 039715 646 DEATHVLLSNIYAMA 660 (805)
Q Consensus 646 ~~~~~~~l~~~~~~~ 660 (805)
+|..-.+||-.+...
T Consensus 773 ~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 773 SPLINLCLGLAFIHL 787 (895)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999888888766544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-11 Score=123.12 Aligned_cols=272 Identities=14% Similarity=0.088 Sum_probs=202.5
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhhH----HHH-HHHHHHc-CChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCC
Q 039715 386 DVYAKCGRMENSVELFAESPKRNHVTW----NTM-IVGYVQL-GEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAA 459 (805)
Q Consensus 386 ~~y~~~g~~~~A~~~f~~~~~~~~~~~----~~l-i~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 459 (805)
.-|.+.|+++.|.+++.-..++|..+- |.| +--|.+. .++..|.++-+...... +-+....+.-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 357899999999998877766543322 222 2223333 34566666655544321 1122222222223345689
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLM 536 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 536 (805)
+++|.+.+.+.+...-. -+...-.+.-.|-+.|++++|++.|-++. ..++...-.+.+.|-...+..+|++++-+.
T Consensus 506 ~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999999876533 23333344556788999999999998764 457777778889999999999999999888
Q ss_pred HHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCCCH
Q 039715 537 QQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI-EPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP-FQPSV 613 (805)
Q Consensus 537 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~ 613 (805)
.. +-| |+..+.-|...|-+.|+-.+|.+++-.- |.. +.+.++..-|...|....-.++|+.+|++.. ++|+.
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 77 555 5667888888999999999999886543 343 4488899999999999999999999999874 68999
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 614 MIWRALLGAC-IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 614 ~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
.-|..++..| ++.|+++.|...|+......|++...+-.|..+....|.-+
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 9999999886 56899999999999999999999999999998888887543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-11 Score=118.93 Aligned_cols=405 Identities=15% Similarity=0.139 Sum_probs=271.1
Q ss_pred cccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhh--CCCCHHHH-HHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHH
Q 039715 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACL--GLDTIRVA-KSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNA 296 (805)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 296 (805)
+|..+++.-+++.|+..|+..+...--.++...+ ...++--+ ++-|-.|.+.| +.+..+| |.|++.+
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD- 197 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH-
Confidence 3445566666678888887766655444444322 22222211 12233333333 1222222 4555544
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCc
Q 039715 297 RRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLS 376 (805)
Q Consensus 297 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 376 (805)
++-+...+...++.+||.|+++--..+.|.+++++-.....+.+..+||.++.+-.- ..++.+..+|+...+.|
T Consensus 198 --L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 198 --LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred --HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 444444456688999999999999999999999999988889999999999987543 34488999999999999
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHH----hcCC----CCChhhHHHHHHHHHHcCChHH-HHHHHHHHhh----cCCCC-
Q 039715 377 DVFVSNALMDVYAKCGRMENSVELF----AESP----KRNHVTWNTMIVGYVQLGEVGK-AMIMFSKMLE----EQVPA- 442 (805)
Q Consensus 377 ~~~~~~~Li~~y~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p- 442 (805)
|..++|+++.+.++.|+++.|++-+ .+|+ +|...+|..+|..+++.++..+ |..++.+++. ...+|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999999999999988876554 3443 5788899999999999888754 5555555543 22333
Q ss_pred ---ChhhHHHHHHHHhccCCchhHHHHHHHHHHcC----CCCc---HhHHHHHHHHHHhcCCHHHHHHHhhhcCC----C
Q 039715 443 ---TEVTYSSVLRACASLAALEPGMQVHCLTVKAN----YDMD---VVVANALIDMYAKCGSITDARLVFDMMND----W 508 (805)
Q Consensus 443 ---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~ 508 (805)
|...|.+.+..|.+..+.+.|.++++...... +.++ ..-|..+.++.+....++.-...|+.|.. +
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 34468889999999999999999998776421 2232 34566788888999999999999998874 3
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--------------------CHHHHHH-H
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGG--------------------LLEQGEA-Y 567 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--------------------~~~~a~~-~ 567 (805)
+..+-.-++.+....|+++-.-+++..+...|..-+...-..++.-+++.. ++.++.+ -
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555566777777777777777777776653333322222222222221 1111111 1
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039715 568 FKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPSVMIWRALLGACIIHNNVEIGRLSAQHIL 640 (805)
Q Consensus 568 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 640 (805)
-.+|. ..+......++..-++.|.|+.++|.+++.-. |..|.....--+..+-.+.++...|..+++-+.
T Consensus 512 ~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 512 PIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11222 23445667888999999999999999988633 444444444456666777888888998888776
Q ss_pred ccC
Q 039715 641 DFE 643 (805)
Q Consensus 641 ~~~ 643 (805)
+.+
T Consensus 589 ~~n 591 (625)
T KOG4422|consen 589 AFN 591 (625)
T ss_pred HcC
Confidence 644
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-10 Score=122.01 Aligned_cols=149 Identities=14% Similarity=0.063 Sum_probs=110.9
Q ss_pred hhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccC---CCCCcchHHHHHHHHHcCCChhHHH
Q 039715 66 CIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEM---PERNTISFVTTIQGYTVSSQFVEAV 142 (805)
Q Consensus 66 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~ 142 (805)
....|++++|..++..+++..+ .....|-.|...|-..|+.+++...+-.. ...|..-|-.+..-..+.|++++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 3445999999999999999876 46678999999999999999998766432 3346678999999999999999999
Q ss_pred HHHHHHHhCCCCCCcc-hHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHH----HHHHHhcCCHHHHHHHHhh
Q 039715 143 GLFSTLHREGHELNPF-AFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTAL----IDAFSVCGCVEFARKVFDG 217 (805)
Q Consensus 143 ~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~y~~~g~~~~A~~~~~~ 217 (805)
-.|.+..+. .|+.. .+---...|-+.|+...|...+.++.....+.|..-.-.+ +..|...++-+.|.+.++.
T Consensus 228 ~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999884 44443 4444456788899999999999999987754443333333 4444455555666655553
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-11 Score=132.07 Aligned_cols=201 Identities=11% Similarity=0.020 Sum_probs=131.8
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCH------hHHHHHHHHHHh
Q 039715 449 SVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNE------VSWNAMISGYSM 522 (805)
Q Consensus 449 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~ 522 (805)
.++..|.+.-+..++...-+.....-+ ...|..||+......+.++|..+.++...+|. --+..+...+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 344455544444444433333222211 25789999999999999999999999987643 457788889999
Q ss_pred CCChHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 039715 523 HGLSAEVLKVFDLMQQRGW-RPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 600 (805)
.+...++..++.++.+.-. .|+ ..++.-++......|..+.-.++++-+. .+|+.-+ .-++....+.++...|
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv-slgl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV-SLGLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH-Hhhhhhc----ccceEEEeeccchhhh
Confidence 9999999999999987432 232 4467778888888899988888887766 3355432 4455667788888888
Q ss_pred HHHHHcC--CCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh--cCCC
Q 039715 601 AKLIEGI--PFQPSVMIWRALLGACIIHN--NVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS--KEPG 672 (805)
Q Consensus 601 ~~~~~~~--~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~ 672 (805)
.+.++.. ..+|.+.....+...+.++- +.+.+......+ . .|.+.|+..+|.+ +.||
T Consensus 616 ~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~i------------q---~f~k~g~~~~a~di~etpG 678 (1088)
T KOG4318|consen 616 QEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPI------------Q---KFEKLGSCVDAGDITETPG 678 (1088)
T ss_pred hhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchh------------H---HHHhcccccchhhccccCc
Confidence 8887644 34566555555555544321 223222211111 0 3888999999888 5555
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=148.51 Aligned_cols=248 Identities=13% Similarity=0.125 Sum_probs=110.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHH-HHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 039715 416 IVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSS-VLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGS 494 (805)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 494 (805)
...+.+.|++++|++++++......+|+...|.. +...+...++.+.|.+.++.+...+. .++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 3344445555555555543332221233333322 22233345555555555555555432 244556666666 67788
Q ss_pred HHHHHHHhhhcCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 039715 495 ITDARLVFDMMND--WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG-WRPNNLTFVGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 495 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
+++|.++++...+ ++...|..++..+...|+++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888877643 466778888888999999999999999987533 2345567777788889999999999999999
Q ss_pred HHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 572 VANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP--FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 572 ~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.+. .| +......++.++...|+.+++.++++... ...|+..|..+..+|...|+.++|+..++++++..|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 854 57 47788889999999999999888776551 1345668999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHhh
Q 039715 649 THVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 649 ~~~~l~~~~~~~g~~~~a~~ 668 (805)
....+++++...|+.++|.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHHHT----------
T ss_pred cccccccccccccccccccc
Confidence 99999999999999999976
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-10 Score=113.14 Aligned_cols=465 Identities=12% Similarity=0.103 Sum_probs=214.1
Q ss_pred HHHHHHHHHhCCCchHHHHHhccCCC----CCcchH-HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHH---
Q 039715 94 TNVLLNVYVKLNRLPDATKLFDEMPE----RNTISF-VTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLK--- 165 (805)
Q Consensus 94 ~~~ll~~~~~~g~~~~A~~~f~~~~~----~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--- 165 (805)
...|.+-|.......+|+..++-+.+ ||.-.. -.+-..|.+..++.+|++.|+-....-...+..+-..+++
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 33455566666677788877776543 332211 1233456777888999998877666433334444444443
Q ss_pred -HHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh--------------ccccH-----HH
Q 039715 166 -VLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL--------------FNDCF-----EE 225 (805)
Q Consensus 166 -~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~--------------~~g~~-----~~ 225 (805)
.+.+.|.++.|...|+++.+.. |+..+.-.|+-.|..-|+-+..++.|.+| ...++ .+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 3568899999999999988775 77666666666677778888888888876 01111 11
Q ss_pred HH--HHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHH-HHHHHHHcCCChHHHHHHHhh
Q 039715 226 AL--NFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAV-ALLDLYTKSGEISNARRIFEE 302 (805)
Q Consensus 226 A~--~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~ 302 (805)
++ +.++.|.+.. +. +.+.+.-.-..++..-+.|+-.... --+...-.....+.|..+
T Consensus 362 ai~nd~lk~~ek~~-ka----------------~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl--- 421 (840)
T KOG2003|consen 362 AIKNDHLKNMEKEN-KA----------------DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL--- 421 (840)
T ss_pred HHhhHHHHHHHHhh-hh----------------hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh---
Confidence 11 1222222211 00 1111111111122111222211000 000000000000000000
Q ss_pred CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhH--HHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHH
Q 039715 303 MPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFT--FVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFV 380 (805)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 380 (805)
--.-...|.++|+++.|+++++-+.+..-+.-... -.+.+.....-.++-.|.+.-+..+... .-+...
T Consensus 422 --------ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a 492 (840)
T KOG2003|consen 422 --------EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAA 492 (840)
T ss_pred --------hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHH
Confidence 00011223444444444444444433221111111 1111111222233444444433333221 111111
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHH---HHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhcc
Q 039715 381 SNALMDVYAKCGRMENSVELFAESPKRNHVTWNTM---IVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASL 457 (805)
Q Consensus 381 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 457 (805)
.+.-.+.-...|++++|.+.|.+....|...-.+| .-.+-..|+.++|++.|-++... +..+...+..+.+.|...
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELL 571 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHh
Confidence 11112222334555555555555444443322222 22344455555555555554321 122333444445555555
Q ss_pred CCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHH
Q 039715 458 AALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFD 534 (805)
Q Consensus 458 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 534 (805)
.+..+|.+++.+.... ++.|+.+.+-|.+.|-+.|+-..|.+..-.-- ..|+.+..-|..-|....-+++|+.+|+
T Consensus 572 ed~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred hCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555444322 34455566666666666666666555443221 1244444445555555556666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC
Q 039715 535 LMQQRGWRPNNLTFVGVLSAC-SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAG 595 (805)
Q Consensus 535 ~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 595 (805)
+..- +.|+..-|..++..| .+.|++..|..+++...++ ++.+......|+...+..|
T Consensus 651 kaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 651 KAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence 6554 566666665555544 3456666666666665543 3345555555555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=135.95 Aligned_cols=266 Identities=15% Similarity=0.101 Sum_probs=207.1
Q ss_pred ChHHHHHHHhcCCCC--Chh-hHHHHHHHHHHcCChHHHHHHHHHHhhcC-C-CCChhhHHHHHHHHhccCCchhHHHHH
Q 039715 393 RMENSVELFAESPKR--NHV-TWNTMIVGYVQLGEVGKAMIMFSKMLEEQ-V-PATEVTYSSVLRACASLAALEPGMQVH 467 (805)
Q Consensus 393 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~a~~~~ 467 (805)
+..+|...|..++.. |+. ...-+..+|...+++++|.++|+.+.+.. . .-+...|+++|--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886643 443 22446678889999999999999987642 1 12344777776543221 111122
Q ss_pred H-HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039715 468 C-LTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP 543 (805)
Q Consensus 468 ~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 543 (805)
. .+++. -+..+.+|-++.+.|.-+++.+.|++.|++..+. ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22222 2556889999999999999999999999999855 456888888888999999999999999887 566
Q ss_pred CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHH
Q 039715 544 NNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRAL 619 (805)
Q Consensus 544 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 619 (805)
... .|..+...|.+.++++.|.-.|+++. .+.| +.....+++..+-+.|+.|+|+++++++ ..+| |+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 543 77788889999999999999999988 6788 4567778889999999999999999977 2333 55444455
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 620 LGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 620 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+..+...+++++|+..+|++-++-|++...|..||.+|.+.|+.+.|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 5667778999999999999999999999999999999999999999988
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-12 Score=133.88 Aligned_cols=198 Identities=10% Similarity=0.063 Sum_probs=150.9
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHH---HHHHHHH
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWN---AMISGYS 521 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~ 521 (805)
.||-.+.+.++.+++.+.|.+.|++.+..+ +....+|+.+..-+.....+|.|...|+.....|+..|| -++..|.
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 345555555555555555555555544433 225667777777777888899999999988877666555 4678899
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHH
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDK 599 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~e 599 (805)
+.++++.|.-.|++..+ +.|. .+....+...+.+.|+.|+|+++++++. .++| |+..--..+..+...++++|
T Consensus 501 Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred ccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHHHhhcchHH
Confidence 99999999999999999 6774 5566777778889999999999999987 4566 44444456677888999999
Q ss_pred HHHHHHcCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 600 AAKLIEGIP-FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 600 A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
|+..++++. +.|+ ..++-.++..|.+.|+.+.|+.-|--+.+++|.-..
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999883 4565 567888889999999999999999999999996433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-11 Score=120.60 Aligned_cols=342 Identities=11% Similarity=0.078 Sum_probs=223.0
Q ss_pred HHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH--HHHHHHhccCCchH
Q 039715 284 LDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFV--SVLQACATMEGLDL 361 (805)
Q Consensus 284 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~ 361 (805)
.-.+.+.|....|...|......-+.-|.+-+....-..+.+.+. .... |...|...+. .+..++......++
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777776665544444444332221111111111 1111 1111111111 23334444555666
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 039715 362 GNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVP 441 (805)
Q Consensus 362 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 441 (805)
+.+-.......|++.+...-+....++-...++|+|+.+|+++.+.|+.-.
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl----------------------------- 296 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL----------------------------- 296 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-----------------------------
Confidence 666666666666666555555555555555556666666655544322100
Q ss_pred CChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHH
Q 039715 442 ATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMIS 518 (805)
Q Consensus 442 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 518 (805)
-|..||+.+|-.-....++.---+....+ . .--+.+...+.+.|+-.++.++|...|++..+. -...|+.|..
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGH 372 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSNI--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGH 372 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHHh--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhH
Confidence 12223333332211111110000000011 1 223456677788888899999999999988754 4568999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC
Q 039715 519 GYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH 596 (805)
Q Consensus 519 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 596 (805)
-|....+...|++-++..++ +.| |-..|-++..+|.-.+...-|+-+|++.. .++| |...|.+|++.|.+.++
T Consensus 373 EyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 373 EYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred HHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhcc
Confidence 99999999999999999999 566 66799999999999999999999999987 5677 67899999999999999
Q ss_pred HHHHHHHHHcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------cCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 597 LDKAAKLIEGIPFQP--SVMIWRALLGACIIHNNVEIGRLSAQHILD-------FEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 597 ~~eA~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
++||++-|.+.-.-. +...+..|...|-+.++.++|...+++-++ .+|+-..+-.-|++-+.+.++|++|.
T Consensus 448 ~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 999999999773222 447889999999999999999999998887 44545556667899999999999997
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
.
T Consensus 528 ~ 528 (559)
T KOG1155|consen 528 Y 528 (559)
T ss_pred H
Confidence 6
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-10 Score=117.74 Aligned_cols=253 Identities=15% Similarity=0.087 Sum_probs=200.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 409 HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
+...-.-..-+...+++.+..+++++..+.. ++....+..-|..+...|+-.+-..+-..+++. .|....+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3334444556677899999999999998753 444444544555677777766666665555554 36677889999999
Q ss_pred HHhcCCHHHHHHHhhhcCCCC---HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHH
Q 039715 489 YAKCGSITDARLVFDMMNDWN---EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 564 (805)
|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. -| ....+..+.-=|...++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHH
Confidence 999999999999999877544 458999999999999999999999888763 33 222344444458889999999
Q ss_pred HHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 039715 565 EAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP--------FQP-SVMIWRALLGACIIHNNVEIGRL 634 (805)
Q Consensus 565 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~ 634 (805)
.++|.+.. ++.| |+...+-++-+....+.+.+|..+|+..- .++ -..+|+.|+.+|++.+++++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99998877 7788 56778888878888899999999987541 112 23568999999999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 635 SAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 635 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+++++.+.|.++.+|..+|-+|...|+++.|..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 9999999999999999999999999999999988
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-11 Score=127.88 Aligned_cols=255 Identities=10% Similarity=-0.021 Sum_probs=160.4
Q ss_pred hccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHH
Q 039715 354 ATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKR---NHVTWNTMIVGYVQLGEVGKAMI 430 (805)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 430 (805)
...|+++.+...+..+.+................+...|++++|...++.+.+. +......+...|.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 455555555555555554321111222223355666677777777777665432 45566677777778888888888
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---C
Q 039715 431 MFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---D 507 (805)
Q Consensus 431 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~ 507 (805)
++..+.+.+..++. .+..+- ..++..++....+..+.+...++++.++ .
T Consensus 209 ~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 209 ILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 88888776543221 111000 0011222222233334455555665554 2
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHH
Q 039715 508 WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTS 586 (805)
Q Consensus 508 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 586 (805)
.++..+..+..++...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...++ .| |+..+.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~ 333 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWST 333 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHH
Confidence 36677777888888888888888888888773 4444211 222333457888888888887754 34 4566778
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
+..++.+.|++++|.+.|+++ ...|+...+..|...+...|+.++|...+++.+.+.
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888888888888888888866 456888888888888888888888888888887754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-10 Score=120.48 Aligned_cols=263 Identities=12% Similarity=0.049 Sum_probs=141.3
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCC----CcchHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 039715 76 MTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPER----NTISFVTTIQGYTVSSQFVEAVGLFSTLHRE 151 (805)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 151 (805)
..++..+...|+.|+.++|.+||..||..|+++.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 356777788899999999999999999999999998 88888653 4457899999999888877764
Q ss_pred CCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchh-----hHHHHHHHHHhcCCHHHHHHHHh-hhccccHHH
Q 039715 152 GHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAF-----VGTALIDAFSVCGCVEFARKVFD-GLFNDCFEE 225 (805)
Q Consensus 152 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~y~~~g~~~~A~~~~~-~~~~g~~~~ 225 (805)
.|.+.||..|+.+|...||+..-..+-+.+.......... .---++..-+.-+-..+|..+.. .+..|.++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6888899999999999998765222222222211111000 00011111111222233322211 113344555
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC
Q 039715 226 ALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK 305 (805)
Q Consensus 226 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 305 (805)
+++++..+....-. .++-.+|+-+..... -.+++........-.++..++.+++..-.-.|+++.|..++.+|.+
T Consensus 158 llkll~~~Pvsa~~---~p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN---APFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHhhCCccccc---chHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 55554443221100 011112333332221 1222222222221135555666666555556666666666666655
Q ss_pred CCccc----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCC
Q 039715 306 KDVIP----WSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEG 358 (805)
Q Consensus 306 ~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 358 (805)
++... |-.|+-+ .+....+..+++-|...|+.|+..|+..-+-.+...|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 43221 2233322 45555555555666666666666666555555555433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-09 Score=107.22 Aligned_cols=361 Identities=14% Similarity=0.105 Sum_probs=239.8
Q ss_pred CCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCccc-HHHHH
Q 039715 237 GFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIP-WSFMI 315 (805)
Q Consensus 237 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~-~~~li 315 (805)
+..-|.+-+-.......+.|....|...+...+.. -+..|.+-+....-..+.+.+..+-...+..+... --.+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHH
Confidence 44555554444445556778888888877766533 23445555554444556666666655554432111 11244
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhcCC
Q 039715 316 ARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGL--LSDVFVSNALMDVYAKCGR 393 (805)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~ 393 (805)
.++-...+.++++.-.......|+.-+...-+....+.-...|+++|+.+|+.+.+... -.|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 56666678889998888888888765555555555556778899999999999999853 2356677666533222222
Q ss_pred hH-HHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHH
Q 039715 394 ME-NSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVK 472 (805)
Q Consensus 394 ~~-~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 472 (805)
+. -|..++ .+.+--+.|...+..-|.-.++.++|+..|++.++.+ +-....++.+..-|....+...|.+-++.+++
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 22 122222 2222234456666777777888899999999988753 22234566667778888888888888888887
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 039715 473 ANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFV 549 (805)
Q Consensus 473 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 549 (805)
.+ +.|-..|-.|.++|.-.+...-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....| ..+...+.
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 76 5577888888888888888888888888775 2378888888888888888888888888888765 34567788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhc---C-CCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 039715 550 GVLSACSNGGLLEQGEAYFKSMVANY---G-IEP-CIEHYTSMVSLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 550 ~ll~a~~~~g~~~~a~~~~~~m~~~~---~-~~p-~~~~~~~li~~~~~~g~~~eA~~~~~ 605 (805)
.+...+.+.++..+|.++|+...+.. | +.| ......-|..-+-+.+++++|.....
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 88888888888888888888776542 1 222 12222334555667777777766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-10 Score=123.70 Aligned_cols=291 Identities=10% Similarity=-0.032 Sum_probs=183.9
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHH
Q 039715 319 AQTDLSIDAVELFCRMRQAFVAPNQF-TFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENS 397 (805)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 397 (805)
...|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+...+..+.+....+...+.-.....+...|++++|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4468888888888776654 34432 23333455666778888888777776654223233444456666777777777
Q ss_pred HHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcC
Q 039715 398 VELFAESPKR---NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKAN 474 (805)
Q Consensus 398 ~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 474 (805)
...++.+.+. +...+..+...|.+.|++++|.+++.++.+.++.+.. .+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 7777665432 4455666677777777777777777777665432211 1110000
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--H
Q 039715 475 YDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTF--V 549 (805)
Q Consensus 475 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~ 549 (805)
..+..+++.-......+...+.++..+. .+...+..++..+...|++++|.+++++..+. .||.... .
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0111111111122233444555555553 37888888889999999999999999999884 4555421 1
Q ss_pred HH-HHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHHH
Q 039715 550 GV-LSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEG---IPFQPSVMIWRALLGACII 625 (805)
Q Consensus 550 ~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~---~~~~p~~~~~~~l~~~~~~ 625 (805)
.+ .......++.+.+.+.++...+...-.|+.....+++.++.+.|++++|.+.|++ ....||...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 11 1123345778888888888775432223225667888889999999999999983 2457888888888888999
Q ss_pred cCCHHHHHHHHHHHhc
Q 039715 626 HNNVEIGRLSAQHILD 641 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~ 641 (805)
.|+.++|.+++++.++
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999888765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-08 Score=99.62 Aligned_cols=423 Identities=12% Similarity=0.080 Sum_probs=254.2
Q ss_pred hhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcc-hHHHHHHHHHcCCChhHHH
Q 039715 66 CIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTI-SFVTTIQGYTVSSQFVEAV 142 (805)
Q Consensus 66 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~ 142 (805)
-..++++..|+++|...+... ..++.+|-.-+.+=.++..+..|+.+||+... |.+. -|-.-+-.--.-|+...|.
T Consensus 83 Eesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 345678888999999888766 45777888888888899999999999998543 3332 4655555556678999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhcccc
Q 039715 143 GLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDC 222 (805)
Q Consensus 143 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~ 222 (805)
++|++-.+ ..|+...+.+.++-=.+...++.|+.+++..+-. +|++..|-.-...--++|.+..|+++|+
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vye------ 231 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYE------ 231 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHH------
Confidence 99999877 6899999999999999999999999999887754 5899999888888889999999999988
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCc-HhHHHHHHHHHHcCCChHHHHHHH-
Q 039715 223 FEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMD-LYVAVALLDLYTKSGEISNARRIF- 300 (805)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f- 300 (805)
.|++.|..=.. +...|.+...-=.++..++.|+-++...+..-+... ...+..+...=-+.|+........
T Consensus 232 --rAie~~~~d~~-----~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 232 --RAIEFLGDDEE-----AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred --HHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 44444432100 112233333333355667778888888777643221 334444544444445543332222
Q ss_pred --hh-----CCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-------HHHHHHHHH---hccCCch
Q 039715 301 --EE-----MPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQF-------TFVSVLQAC---ATMEGLD 360 (805)
Q Consensus 301 --~~-----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~~~~~ 360 (805)
.+ +... |-.+|--.++.-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+++
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11 1122 3445655666666667777777777766653 344211 111111111 2344555
Q ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 039715 361 LGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQV 440 (805)
Q Consensus 361 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 440 (805)
...++|+..++. ++...+++.-+=-+|+ .--.++.+...|.+++-..+ |.
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA---------------------------~feIRq~~l~~ARkiLG~AI--G~ 433 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYA---------------------------QFEIRQLNLTGARKILGNAI--GK 433 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHH---------------------------HHHHHHcccHHHHHHHHHHh--cc
Confidence 555555555551 2333344433333332 22333444555555554443 34
Q ss_pred CCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-C----CHhHHHH
Q 039715 441 PATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND-W----NEVSWNA 515 (805)
Q Consensus 441 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~----~~~~~~~ 515 (805)
-|-..+|...|..-.++++++..+.+++..++.+ +.+..+|.-....-...|+.+.|..+|+-... | ....|-+
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 4555555555555555555555555555555554 33455555555555555666666666655442 2 2345555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
.|.--...|.++.|..+++++++
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHH
Confidence 55555556666666666666665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-10 Score=126.28 Aligned_cols=282 Identities=9% Similarity=0.041 Sum_probs=194.3
Q ss_pred HcCCChHHHHHHHhhCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--HHHHHHHHHhccCCchHH
Q 039715 288 TKSGEISNARRIFEEMPKKDVI---PWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQF--TFVSVLQACATMEGLDLG 362 (805)
Q Consensus 288 ~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 362 (805)
...|+++.|.+.+.+..+.... .+-.....+.+.|+++.|...|.+..+. .|+.. .-......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4589999999999887654222 2444456778889999999999998764 35543 333346778889999999
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHH----HHHHHHcCChHHHHHHHHHH
Q 039715 363 NQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRN---HVTWNTM----IVGYVQLGEVGKAMIMFSKM 435 (805)
Q Consensus 363 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~l----i~~~~~~g~~~~A~~~~~~m 435 (805)
...++.+.+.. +.+..+...+...|.+.|++++|.+.++.+.+.. ...+..+ ..++...+..+++.+.+.++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999987 5567889999999999999999999998877542 2222111 11112222222222233333
Q ss_pred hhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC--CHhH-
Q 039715 436 LEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW--NEVS- 512 (805)
Q Consensus 436 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~- 512 (805)
.... | + ..+.+...+..++..+...|+.++|.+++++..+. |...
T Consensus 252 ~~~~--p-----------------------------~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKNQ--P-----------------------------R-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHHC--C-----------------------------H-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 2211 1 0 01235666777777788888888888888777643 2221
Q ss_pred --HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 039715 513 --WNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL---TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM 587 (805)
Q Consensus 513 --~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 587 (805)
+..........++.+.+++.+++..+ ..|+.. ...++...|.+.|++++|.++|+.... +...|+.+.+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHH
Confidence 12222233445778888899988887 466655 445777888999999999999995331 2567998888899
Q ss_pred HHHHHhcCCHHHHHHHHHcC
Q 039715 588 VSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~ 607 (805)
..++.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-10 Score=125.31 Aligned_cols=268 Identities=10% Similarity=0.060 Sum_probs=193.4
Q ss_pred cCChHHHHHHHhcCCCC--Chh-hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHH--HHHHHHhccCCchhHHH
Q 039715 391 CGRMENSVELFAESPKR--NHV-TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYS--SVLRACASLAALEPGMQ 465 (805)
Q Consensus 391 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 465 (805)
.|+++.|++.+...++. ++. .+-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665443 122 2323334446788888888888888653 45543332 33456677888888888
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCC---H--------hHHHHHHHHHHhCCChHHHHHHHH
Q 039715 466 VHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWN---E--------VSWNAMISGYSMHGLSAEVLKVFD 534 (805)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~~ 534 (805)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.. . ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 5567888888999999999999998888887431 1 133344444444455566666777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-C
Q 039715 535 LMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-S 612 (805)
Q Consensus 535 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~ 612 (805)
.+.+. .+.+......+..++...|+.++|..+++...+ ..|+.... ++......|+.+++.+.+++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 344677888889999999999999999988874 34555322 223333569999999999876 3345 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+..+.+++..|...|++++|.+.++++++.+|++ ..+..|+.++.+.|+.++|.+
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHH
Confidence 5678899999999999999999999999999965 557899999999999999976
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-10 Score=111.40 Aligned_cols=207 Identities=14% Similarity=0.122 Sum_probs=162.6
Q ss_pred ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHH
Q 039715 456 SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKV 532 (805)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 532 (805)
-.|+.-.+.+-++.+++....+ ...|--+..+|....+.++-.+.|++... .|..+|.--...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 3467777777777777765333 23366666778888888888888887763 3566777777777778889999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC
Q 039715 533 FDLMQQRGWRPNN-LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ 610 (805)
Q Consensus 533 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 610 (805)
|++.+. +.|+. ..|..+.-+..+.+.++++...|+..+++ ++-.++.|+-....+..+++++.|.+.|+.. .++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 67754 47777777778889999999999999876 3446788999999999999999999999854 333
Q ss_pred CC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 611 PS---------VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 611 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+ +.+..+++-.-. .+++.+|+.+++++++++|....+|..|+.+-.++|+.++|.+
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33 334444444433 3999999999999999999999999999999999999999987
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-08 Score=102.20 Aligned_cols=440 Identities=14% Similarity=0.114 Sum_probs=296.2
Q ss_pred hhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCC
Q 039715 176 CPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGL 255 (805)
Q Consensus 176 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 255 (805)
|+.+++..+... ..+...|-.-+.+-.++..+..|+.++++ |+.++-+ .|..=|. -+-.=-..
T Consensus 92 ARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dR--------Avt~lPR-------VdqlWyK-Y~ymEE~L 154 (677)
T KOG1915|consen 92 ARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDR--------AVTILPR-------VDQLWYK-YIYMEEML 154 (677)
T ss_pred HHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHH--------HHHhcch-------HHHHHHH-HHHHHHHh
Confidence 333444433333 35566666677777777778877777773 2322211 1111111 11111235
Q ss_pred CCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCC--CCCcccHHHHHHHHHhCCChhHHHHHHHH
Q 039715 256 DTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMP--KKDVIPWSFMIARYAQTDLSIDAVELFCR 333 (805)
Q Consensus 256 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (805)
|++..|+++|+.-.+- .|+...|++.|+.=.+-..++.|+.++++.. .|++..|---..-=.++|+...|..+|..
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 7778888888877654 7888888888888888888888888888754 57777787777777778888888888877
Q ss_pred HHHCCCCCChhH----HHHHHHHHhccCCchHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCChHHHHHH-------
Q 039715 334 MRQAFVAPNQFT----FVSVLQACATMEGLDLGNQIHSLVVRVGLLSD--VFVSNALMDVYAKCGRMENSVEL------- 400 (805)
Q Consensus 334 m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~------- 400 (805)
..+. -.|... |++...-=.+...++.|.-+|...+..= +.+ ...+..+...--+-|+...-...
T Consensus 233 Aie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 233 AIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 6653 122332 3333333345677888999999888753 222 45566666655566664433332
Q ss_pred -HhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-------hHHHH---HHHHhccCCchhHHHH
Q 039715 401 -FAESPKR---NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-------TYSSV---LRACASLAALEPGMQV 466 (805)
Q Consensus 401 -f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~l---l~a~~~~~~~~~a~~~ 466 (805)
++.+... |-.+|--.+..--..|+.+...++|++.+.. ++|-.. .|.-+ +-.-....+.+.++++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2223332 5567888888888889999999999999865 455321 12211 2222356788999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHH----hcCCHHHHHHHhhhcC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039715 467 HCLTVKANYDMDVVVANALIDMYA----KCGSITDARLVFDMMN--DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG 540 (805)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 540 (805)
++..++. ++...+++.-+=-+|+ ++.++..|.+++.... .|-.-++-..|..-.+.+.++.+..++++.++
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-- 465 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-- 465 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 9998883 4555566665555554 6889999999998876 45667788888888899999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHH
Q 039715 541 WRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRA 618 (805)
Q Consensus 541 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ 618 (805)
..| |..++......-...|+.+.|+.+|.-+.....++--...|.+.|+.=...|.++.|..+++++ ...+...+|-+
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis 545 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS 545 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence 456 5567777777677889999999999998865333334567888888888999999999999877 22345558887
Q ss_pred HHHHHH-----HcC-----------CHHHHHHHHHHHhc
Q 039715 619 LLGACI-----IHN-----------NVEIGRLSAQHILD 641 (805)
Q Consensus 619 l~~~~~-----~~g-----------~~~~a~~~~~~~~~ 641 (805)
+..--. ..| +...|..+|+++..
T Consensus 546 FA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 546 FAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 765433 233 45677777777765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=131.81 Aligned_cols=252 Identities=14% Similarity=0.159 Sum_probs=69.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHH-HHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 039715 315 IARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVL-QACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGR 393 (805)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 393 (805)
...+.+.|++++|++++++.......|+...|..++ ..+...++.+.|...++.+.+.+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 344445555555555554333222123333333322 233445556666666666655442 234445555555 46666
Q ss_pred hHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcC-CCCChhhHHHHHHHHhccCCchhHHHHHHHH
Q 039715 394 MENSVELFAESPK--RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQ-VPATEVTYSSVLRACASLAALEPGMQVHCLT 470 (805)
Q Consensus 394 ~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 470 (805)
+++|.++++..-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6776666655422 344556666667777777777777777765422 1233334444455555555555555555555
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHH
Q 039715 471 VKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNL 546 (805)
Q Consensus 471 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ 546 (805)
++.. |.|..+.+.++.++...|+.+++.+++.... ..|...|..+..+|...|++++|+..|++.... .| |..
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~ 249 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPL 249 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccc
Confidence 5544 2244555555555555555555444444332 234445555555555555666666666555552 23 344
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
....+..++...|+.++|.++.+++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4555555555555555555555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-09 Score=104.64 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=129.3
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCc---cHHHHHHHHHHHHhcCChHH
Q 039715 320 QTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLS---DVFVSNALMDVYAKCGRMEN 396 (805)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~ 396 (805)
-+.++++|+++|-+|.+.. +-+..+-.++.+.+.+.|..+.|+.+|+.+.++.--+ -....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567888999999988742 1233344567777888899999999998888742111 12345567788889999999
Q ss_pred HHHHHhcCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhh----HHHHHHHHhccCCchhHHHHHHH
Q 039715 397 SVELFAESPKRNH---VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVT----YSSVLRACASLAALEPGMQVHCL 469 (805)
Q Consensus 397 A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~~ 469 (805)
|+.+|..+.+... .....|+..|-+..++++|++.-+++...+-.+..+- |.-+........+++.|...+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999988776433 3566678889999999999999888887665554432 22333333334445555555555
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHh----HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 470 TVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEV----SWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 470 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
..+.+ +..+...-.+.+.+...|+++.|.+.++.+.+.|.. ....|..+|.+.|+.++.+..+.++.+
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44443 223333334444444444444444444444433322 233334444444444444444444444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-06 Score=95.33 Aligned_cols=139 Identities=14% Similarity=0.251 Sum_probs=113.5
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMV 588 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 588 (805)
....|..+..+-.+.|...+|++-|-+. -|+..|..++.++++.|.+++-.+++...+++ .-+|.++ +.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3457999999999999999999877543 35678999999999999999999999777655 5566554 5799
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 589 SLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
-+|++.+++.|-++++. .||..-....+.-|...|.++.|.-+|. +.+.|..|+..+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988873 4788888888999999999999988886 44567777777777777777665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7e-09 Score=107.25 Aligned_cols=493 Identities=12% Similarity=0.041 Sum_probs=264.2
Q ss_pred cCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhc--cCCCCCcchHHHH
Q 039715 51 VSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFD--EMPERNTISFVTT 128 (805)
Q Consensus 51 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~--~~~~~~~~~~~~l 128 (805)
.+..+..-+..+++-+..+..+..|.-+-..+...+..|+..-| +..+|.-.|.++.|..+.. .+.+.|..+....
T Consensus 11 ~d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~--~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~ 88 (611)
T KOG1173|consen 11 ADELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYW--LAQVLYLGRQYERAAHLITTYKLEKRDIACRYLA 88 (611)
T ss_pred cccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHH--HHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 44566777888999888888999999888888777755554444 7778888888888877765 4567888888888
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCH
Q 039715 129 IQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCV 208 (805)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 208 (805)
...+.+..++++|..++..-. +.-+.+.|-.-=. +..-..+.+...+..-.+.++ +-.--..|......
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCcccccccccchhce------eeeeeehhhhhccH
Confidence 899999999999998887331 1111111110000 000011111111100001110 00001122223333
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHH-
Q 039715 209 EFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLY- 287 (805)
Q Consensus 209 ~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y- 287 (805)
++|+.-|.+...-+ -...+-|..|....+---...+-.+.. ++.+. . ...+......+...+
T Consensus 158 ~~ar~~Y~~Al~~D-~~c~Ea~~~lvs~~mlt~~Ee~~ll~~-------l~~a~-----~----~~ed~e~l~~lyel~~ 220 (611)
T KOG1173|consen 158 EEARDKYKEALLAD-AKCFEAFEKLVSAHMLTAQEEFELLES-------LDLAM-----L----TKEDVERLEILYELKL 220 (611)
T ss_pred HHHHHHHHHHHhcc-hhhHHHHHHHHHHHhcchhHHHHHHhc-------ccHHh-----h----hhhHHHHHHHHHHhhh
Confidence 44443333220000 001111111211111000000110000 00000 0 000111111111111
Q ss_pred HcCCChHHHHHHH--hhC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHH
Q 039715 288 TKSGEISNARRIF--EEM--PKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGN 363 (805)
Q Consensus 288 ~~~g~~~~A~~~f--~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 363 (805)
++.-+- +....- ..+ .+.++...-.-.+-+...+++.+.+++++...+. .++....+..=|.++...|+..+-.
T Consensus 221 ~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf 298 (611)
T KOG1173|consen 221 CKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLF 298 (611)
T ss_pred hhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHH
Confidence 000000 000000 011 1234444555566677788888888888888765 3445555555556667777766666
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 039715 364 QIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRN---HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQV 440 (805)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 440 (805)
.+-..+++. .+....+|-++.--|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+.=
T Consensus 299 ~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~- 376 (611)
T KOG1173|consen 299 LLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM- 376 (611)
T ss_pred HHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-
Confidence 665555554 35667788888888888899999999998754433 3478889999999999999988887765421
Q ss_pred CCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC----------CH
Q 039715 441 PATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW----------NE 510 (805)
Q Consensus 441 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----------~~ 510 (805)
+-...-+..+.--|.+.++++.|.+.|.++.... |.|+.+.+-+.-+....+.+.+|...|+....+ -.
T Consensus 377 ~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 377 PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 1111122233445666777777777777776654 556667776666666667777777777655411 11
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEH 583 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 583 (805)
.+|+.|+.+|.+.+++++|+..|++.+.. .| |..++.++.-.+...|+++.|...|.+.. .+.|+-..
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~ 524 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIF 524 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHH
Confidence 23555555666666666666666665552 33 34455555555555666666666665554 45555433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-08 Score=97.14 Aligned_cols=369 Identities=12% Similarity=0.044 Sum_probs=247.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHh-CCC--hhH-------------HHHHHHHHHHC------
Q 039715 280 AVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQ-TDL--SID-------------AVELFCRMRQA------ 337 (805)
Q Consensus 280 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~-~g~--~~~-------------A~~~~~~m~~~------ 337 (805)
-...+..|...++-+.|.....+.+..-...-+.|+.+..+ .|- .++ |++.+.-..+.
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e 179 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNE 179 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchh
Confidence 33455566666777777777777766544444444433322 221 111 12222222222
Q ss_pred ---------CCCCChhHHHHHHHHHhc--cCCchHHHHHHHHHHH-hCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC
Q 039715 338 ---------FVAPNQFTFVSVLQACAT--MEGLDLGNQIHSLVVR-VGLLSDVFVSNALMDVYAKCGRMENSVELFAESP 405 (805)
Q Consensus 338 ---------g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 405 (805)
.+.|+..+....+.+++. .++-..+.+.+-.+.+ .-++.|+.....+.+.|...|+.++|...|++..
T Consensus 180 ~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 180 INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 234445555555555443 3444444444444443 3467788999999999999999999999999866
Q ss_pred CCChhhHHHH---HHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHH
Q 039715 406 KRNHVTWNTM---IVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVA 482 (805)
Q Consensus 406 ~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 482 (805)
.-|+.+..+| .-.+.+.|+++....+...+.... +-....|..-+......++.+.|..+-++.++.+ +.+...+
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~al 337 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEAL 337 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHH
Confidence 5555443333 334567888888888877775432 1111222222333345567777777777777655 3344555
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcC--C-CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-c
Q 039715 483 NALIDMYAKCGSITDARLVFDMMN--D-WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVL-SACS-N 557 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~ 557 (805)
-.-..++...|+.++|.-.|+... . -+..+|..|+..|...|+..||.-+-+..... +..+..+...+. ..|. .
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccC
Confidence 555667778899999999998765 3 38899999999999999999999988876653 333444554442 3333 2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
.-.-++|..++++.. .+.|+ ......+..++.+.|+.++++.++++. ...||....+.|+...+..+.+++|...
T Consensus 417 p~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred chhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 334578999988766 56786 456778889999999999999999965 5679999999999999999999999999
Q ss_pred HHHHhccCCCCcchHHHHH
Q 039715 636 AQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 636 ~~~~~~~~p~~~~~~~~l~ 654 (805)
|..++.++|++..+.-.|-
T Consensus 494 y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 494 YYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHhcCccchHHHHHHH
Confidence 9999999999877766553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-09 Score=105.47 Aligned_cols=398 Identities=12% Similarity=0.041 Sum_probs=250.9
Q ss_pred ccccHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCc-HhHHHHHHHHHHcCCChHHH
Q 039715 219 FNDCFEEALNFFSQMRAVGFKPN-NFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMD-LYVAVALLDLYTKSGEISNA 296 (805)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A 296 (805)
.+|.|++|++.+.+.++ ..|| ..-|...-.+|...|+++...+.-...++.. |+ +..+..-..++-..|++++|
T Consensus 127 ~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHHHH
Confidence 45666677777777766 4677 6778888888889999999888877777653 33 33444555667777887776
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHH--------HHHHH-C--CCCCChhHHHHHHHHHhccCCchHHHHH
Q 039715 297 RRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELF--------CRMRQ-A--FVAPNQFTFVSVLQACATMEGLDLGNQI 365 (805)
Q Consensus 297 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~-~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 365 (805)
+.= ++-..+..+|....-..-+.+++ .+-.+ . .+.|......+.+..+...-..
T Consensus 203 l~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~------ 267 (606)
T KOG0547|consen 203 LFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP------ 267 (606)
T ss_pred HHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc------
Confidence 531 12222333332222222222222 22222 1 1345555444444443211000
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhc-CChHHHHHHHhc-------CCCCC---------hhhHHHHHHHHHHcCChHHH
Q 039715 366 HSLVVRVGLLSDVFVSNALMDVYAKC-GRMENSVELFAE-------SPKRN---------HVTWNTMIVGYVQLGEVGKA 428 (805)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~-------~~~~~---------~~~~~~li~~~~~~g~~~~A 428 (805)
.+...+-..|...-..+=..|... ..+..|...+.+ ....+ ..+.+.-..-+.-.|+.-.|
T Consensus 268 --~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 268 --LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred --cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 000000011111111111111111 122333322221 11111 11222222234457888999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC
Q 039715 429 MIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW 508 (805)
Q Consensus 429 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 508 (805)
...|+..+.....++.. |..+...|....+.++..+.|....+.+ +-++.+|..-..++.-.+++++|..-|++...-
T Consensus 346 ~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998865444432 7777788999999999999999999887 446777888888888899999999999998754
Q ss_pred ---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-----
Q 039715 509 ---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----- 580 (805)
Q Consensus 509 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----- 580 (805)
++..|-.+..+.-+.++++++...|++..+. ++.-+..|+.....+...+++++|.+.|+..+ .+.|+
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~LE~~~~~~~ 499 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---ELEPREHLII 499 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---hhcccccccc
Confidence 5567777777777888999999999999985 33345688888899999999999999999987 34554
Q ss_pred ----hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 581 ----IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 581 ----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
+.+..+++-.-- .+++.+|.+++++. .+.|. ...+.+|...-.++|+.++|+++|++...+.-
T Consensus 500 v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 122222222222 38999999999976 45554 45799999999999999999999999887644
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-08 Score=107.14 Aligned_cols=585 Identities=12% Similarity=0.061 Sum_probs=337.6
Q ss_pred CChHHHHHHHHHHHH-cCCCCCcchHHHHHHHHHh--CCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHH
Q 039715 70 DDLQTAMTIHCQVLK-KGNCLDLFATNVLLNVYVK--LNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFS 146 (805)
Q Consensus 70 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~--~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 146 (805)
....+|.......+. .+..+....-..++.+-.. +|...+|.+-|-.-. ..+-++........+...+|....+
T Consensus 18 ~~~~~A~~~l~~~L~~~~~~~~~~~ea~~~lakl~~a~~~e~~ai~~~~~s~---i~~~~~~~~~~~~~~~l~Ea~~il~ 94 (799)
T KOG4162|consen 18 NGLSEAIPELHRALHKHNSSKSFVCEAMLILAKLDYACGEERKAIRNFSASG---IDNQYSENLPLLDLRLLAEAEAILR 94 (799)
T ss_pred CchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhhcccHHHHHHHHHHHhh---cccccccccchhhhhhHHHHHHHHh
Confidence 345566655554444 4444444444445544444 677777777765542 2222223355566777788877765
Q ss_pred HHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCC--------------------------CCch-h------
Q 039715 147 TLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGH--------------------------DSNA-F------ 193 (805)
Q Consensus 147 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--------------------------~~~~-~------ 193 (805)
+-......+...+- ...-...|+.+.|..+|+.+-..++ .|.. .
T Consensus 95 ~glsle~ee~~~~s---~~~~~qr~~~e~al~vFe~~~i~~~~~~~e~~i~~~s~~s~~~~s~~~~a~~p~~~~s~~~~~ 171 (799)
T KOG4162|consen 95 EGLSLEYEEARALS---GRLEYQRGNDEAALRVFEGIDILAITYLQELEIVQNSNSSLRQRSKASFAIEPSTVMSAHGAI 171 (799)
T ss_pred hhcccchhhhhhhh---hhHHHhhcCcHHHHHHhcccchhHHHHHHHHHHHhccCccccCCCccccccCCCcHHHHHHHH
Confidence 54433233333222 3334577889999998865432111 0110 0
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHHhhh--------------------------------------ccccHHHHHHHHH
Q 039715 194 VGTALIDAFS----VCGCVEFARKVFDGL--------------------------------------FNDCFEEALNFFS 231 (805)
Q Consensus 194 ~~~~li~~y~----~~g~~~~A~~~~~~~--------------------------------------~~g~~~~A~~~~~ 231 (805)
.-..++..+. +-|++.+|.+-...+ ..+..++++.-+.
T Consensus 172 Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~~~i~s~~ 251 (799)
T KOG4162|consen 172 LEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPKEAIKSYR 251 (799)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCchHHHHhhh
Confidence 1111222222 123444443333222 2333445555555
Q ss_pred HHHHCCCCCChhhHHHHHHHhh---CCCCHHHH-------------------HHHH----HHHHHhCCCCcHhHHHHHHH
Q 039715 232 QMRAVGFKPNNFTFAFVLKACL---GLDTIRVA-------------------KSAH----GCALKTCYEMDLYVAVALLD 285 (805)
Q Consensus 232 ~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a-------------------~~~~----~~~~~~g~~~~~~~~~~li~ 285 (805)
.....+...+..++..+...+. ..++.+.. .... .++....+..|..+|..|.-
T Consensus 252 ~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~ 331 (799)
T KOG4162|consen 252 RALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTF 331 (799)
T ss_pred HHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 5444444445545444433222 23333333 2111 11222235668888999999
Q ss_pred HHHcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHH-HH-hccCCch
Q 039715 286 LYTKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQ-AC-ATMEGLD 360 (805)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~-~~~~~~~ 360 (805)
...++|+++.+.+.|++...- ....|+.+...|...|.-..|+.+++.-......|+..+.-.+.. .| .+.+.++
T Consensus 332 al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 999999999999999987542 344599999999999999999999988766543455444433333 34 4567788
Q ss_pred HHHHHHHHHHHhC--C--CccHHHHHHHHHHHHhcC-----------ChHHHHHHHhcCCC---CChhhHHHHHHHHHHc
Q 039715 361 LGNQIHSLVVRVG--L--LSDVFVSNALMDVYAKCG-----------RMENSVELFAESPK---RNHVTWNTMIVGYVQL 422 (805)
Q Consensus 361 ~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g-----------~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 422 (805)
++..+-.+++... . ......+-.+.-+|...- ...++...+++..+ .|+..-.-+.--|+..
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQ 491 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 8887777777621 1 122344444544554321 12344555555432 2332222333456677
Q ss_pred CChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 039715 423 GEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKA-NYDMDVVVANALIDMYAKCGSITDARLV 501 (805)
Q Consensus 423 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~ 501 (805)
++.+.|++..++....+-.-+...+..+.-.+...+++..|..+.+..... |. |-.....-+..-..-++.++|...
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHH
Confidence 888999999999888766777778887777888888888888887766542 21 100000111111123444444333
Q ss_pred hhhcCC-------------------------------CCHh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CH--
Q 039715 502 FDMMND-------------------------------WNEV-SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP--NN-- 545 (805)
Q Consensus 502 ~~~~~~-------------------------------~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~-- 545 (805)
...+.. .|.. ++..+ .+... -+.+.+..-.. +...-+.| +.
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-LPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-cCcccccCCCCchH
Confidence 222210 0111 11111 11111 11111100000 11111222 21
Q ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHH
Q 039715 546 ----LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRA 618 (805)
Q Consensus 546 ----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ 618 (805)
..+......+...+..++|...+.+.. ++.| ....|.-.+..+...|..+||.+.|... .+.|+ +.+..+
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A 723 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence 123445556788899999987777765 4556 5667888888999999999999988754 56776 458899
Q ss_pred HHHHHHHcCCHHHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRL--SAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...+.+.|+-..|.. ++..+++++|.++.+|..||.++.+.|+.++|.+
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9999999998888877 9999999999999999999999999999999988
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-10 Score=111.35 Aligned_cols=191 Identities=14% Similarity=0.032 Sum_probs=158.5
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
.....+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456778888999999999999999988763 356788889999999999999999999998853 234557777888
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEI 631 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 631 (805)
.+...|++++|...++.+............+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998854222224567778889999999999999999866 2334 45678888899999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|...++++++..|+++..+..++.++...|++++|..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999989888888899999999999999865
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.2e-10 Score=117.48 Aligned_cols=224 Identities=15% Similarity=0.105 Sum_probs=168.1
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHc-----CC-CCcH-hHHHHHHHHHHhcCCHHHHHHHhhhcCC--------C-
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKA-----NY-DMDV-VVANALIDMYAKCGSITDARLVFDMMND--------W- 508 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~- 508 (805)
.|...+...|...|+++.|...+...++. |. .+.+ ...+.+..+|...+++++|..+|+++.. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36666777888888888888888776654 21 1222 2344577889999999999999888752 1
Q ss_pred --CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCC-CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcC--C
Q 039715 509 --NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR-----GWRP-NNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYG--I 577 (805)
Q Consensus 509 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 577 (805)
-..+++.|...|...|++++|...+++..+. |..+ ... -++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2447888888999999999998888877542 2222 222 466677779999999999999998876654 2
Q ss_pred CCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC-------C--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-
Q 039715 578 EPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI-------P--FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDF- 642 (805)
Q Consensus 578 ~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~-------~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 642 (805)
.++ ..+++.|..+|...|+++||+++++++ . ..+. ....+.|..+|.+.+++++|.+.|++...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 368999999999999999999999866 1 1232 346788889999999999999988877653
Q ss_pred ---CCCC---cchHHHHHHHHHhcCChHHHhh
Q 039715 643 ---EPED---EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 643 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.|++ ..+|..|+-+|..+|++++|.+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 4544 4567889999999999999977
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-06 Score=89.02 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=96.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCC
Q 039715 59 YATSLQSCIQNDDLQTAMTIHCQVLKKG-NCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQ 137 (805)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 137 (805)
|-.-+.....++++..-+..|...+..- +.....+|.-.+......|-++-+.+++.+-.+-++..-+--|.-++..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 3344444455666666666666665542 233445566666666666666677777776655445555666777777777
Q ss_pred hhHHHHHHHHHHhCC------CCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCC--CCc--hhhHHHHHHHHHhcCC
Q 039715 138 FVEAVGLFSTLHREG------HELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGH--DSN--AFVGTALIDAFSVCGC 207 (805)
Q Consensus 138 ~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~y~~~g~ 207 (805)
+++|.+.+....... -+-+-..|.-+-...++..+.-....+ +.+++.|+ -+| ...|++|.+-|.+.|+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 777777777765421 112233455555544444433333222 23333343 233 3689999999999999
Q ss_pred HHHHHHHHhhh
Q 039715 208 VEFARKVFDGL 218 (805)
Q Consensus 208 ~~~A~~~~~~~ 218 (805)
++.|+.+|++.
T Consensus 264 ~ekarDvyeea 274 (835)
T KOG2047|consen 264 FEKARDVYEEA 274 (835)
T ss_pred hHHHHHHHHHH
Confidence 99999999876
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-08 Score=100.59 Aligned_cols=282 Identities=13% Similarity=0.054 Sum_probs=171.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 039715 321 TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVEL 400 (805)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 400 (805)
.|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+-.++.++.+..-.++..+.-+........|+++.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 366666666666655544332 2334445555667777777777777777654456666677777777778888877776
Q ss_pred Hhc---CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-------hHHHHHHHHhccCCchhHHHHHHHH
Q 039715 401 FAE---SPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-------TYSSVLRACASLAALEPGMQVHCLT 470 (805)
Q Consensus 401 f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~~~~~~a~~~~~~~ 470 (805)
.++ |..+++.........|.+.|++.+...++.+|.+.|.--|.. ++..+++-+...+..+.-.+.++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 655 444577777888888888888888888888888877654432 3444444444433333333333322
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 039715 471 VKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVG 550 (805)
Q Consensus 471 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 550 (805)
.+. .. .++..-.+++.-+.+.|+.++|.++..+..+.+..|.- .
T Consensus 256 pr~-lr-------------------------------~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~ 299 (400)
T COG3071 256 PRK-LR-------------------------------NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----C 299 (400)
T ss_pred cHH-hh-------------------------------cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----H
Confidence 211 11 23444444555555566666666666666665555541 1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCH
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNV 629 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~ 629 (805)
.+-.+.+.++...-++..+.-.+.++-.| ..+.+|+.+|.+.+.+.+|.+.|+.. +..|+...|+-+..++.+.|+.
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh
Confidence 12234455555555555555554433333 56666777777777777777777643 5567777777777777777777
Q ss_pred HHHHHHHHHHhc
Q 039715 630 EIGRLSAQHILD 641 (805)
Q Consensus 630 ~~a~~~~~~~~~ 641 (805)
++|.+..++.+-
T Consensus 378 ~~A~~~r~e~L~ 389 (400)
T COG3071 378 EEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHH
Confidence 777777766654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-07 Score=94.56 Aligned_cols=272 Identities=13% Similarity=0.146 Sum_probs=160.7
Q ss_pred cCCchHHHHHHHHHHHhCCCc------cHHHHHHHHHHHHhcCChHHHHHHHhcCCCCCh-------hhHHHHHHHHHHc
Q 039715 356 MEGLDLGNQIHSLVVRVGLLS------DVFVSNALMDVYAKCGRMENSVELFAESPKRNH-------VTWNTMIVGYVQL 422 (805)
Q Consensus 356 ~~~~~~a~~~~~~~~~~g~~~------~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~ 422 (805)
.|+..+-...|..+++.- .| -...|..+.+.|-..|+++.|+.+|++..+-+- ..|..-...=.+.
T Consensus 360 e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 455666666677666531 11 134577778888888888888888887655321 2455555555566
Q ss_pred CChHHHHHHHHHHhhcCCC----------C-------ChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHH
Q 039715 423 GEVGKAMIMFSKMLEEQVP----------A-------TEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANAL 485 (805)
Q Consensus 423 g~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 485 (805)
.+++.|+++.+......-. | +...|+..+..-...|-++..+.+++.+++..+.. +.+....
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHH
Confidence 7777777777665432111 1 12346666666667778888888888888776542 2222223
Q ss_pred HHHHHhcCCHHHHHHHhhhcCC----CCH-hHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 039715 486 IDMYAKCGSITDARLVFDMMND----WNE-VSWNAMISGYSM---HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSA--C 555 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~ 555 (805)
.-.+-...-++++.+++++-.. |++ ..||..+.-+.+ .-+.+.|..+|++.++ |.+|...-+..|+-| =
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 3334455667888888887652 333 367776655543 2357788888888888 666765533333332 1
Q ss_pred HcCCCHHHHHHHHHHHHH--------------------hcCCCCChHHHHHHH----------------HHHHhcCCHHH
Q 039715 556 SNGGLLEQGEAYFKSMVA--------------------NYGIEPCIEHYTSMV----------------SLLGRAGHLDK 599 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~--------------------~~~~~p~~~~~~~li----------------~~~~~~g~~~e 599 (805)
..-|....|..+++++.. .||+..+...|.--| ++=.+.|.++.
T Consensus 597 Ee~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidR 676 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDR 676 (835)
T ss_pred HHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHH
Confidence 234666666666655432 233333333332222 23345688888
Q ss_pred HHHHHHcCC--CCC--CHHHHHHHHHHHHHcCCHH
Q 039715 600 AAKLIEGIP--FQP--SVMIWRALLGACIIHNNVE 630 (805)
Q Consensus 600 A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~ 630 (805)
|..++.-.. ..| +...|.+.-.-=.+|||-+
T Consensus 677 ARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 677 ARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 888876331 233 4567888877778888843
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-11 Score=88.18 Aligned_cols=50 Identities=22% Similarity=0.544 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhc
Q 039715 120 RNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVS 169 (805)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 169 (805)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-07 Score=99.44 Aligned_cols=213 Identities=14% Similarity=0.163 Sum_probs=139.5
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 039715 416 IVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSI 495 (805)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 495 (805)
...+.+.|+++.|+..|-+... ....+.+......+.+|..+++.+..... -...|.-+.+-|+..|++
T Consensus 713 g~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 3445566777777776655432 12334455566677777777776665542 223456677788888888
Q ss_pred HHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 496 TDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN--LTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 496 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
+.|+++|.+.- .++--|..|.+.|++++|.++-.+.. .|.. ..|..-..-....|++.+|.++|-.+.
T Consensus 782 e~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 782 EIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 88888886543 34556677888888888887766543 3433 344444444667788888887763322
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 574 NYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSV--MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 574 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
.|+. -|.+|-|.|..++.+.+.++-. |+. .+...+..-+-..|+...|+..|-++ +-+-
T Consensus 852 ----~p~~-----aiqmydk~~~~ddmirlv~k~h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~k 912 (1636)
T KOG3616|consen 852 ----EPDK-----AIQMYDKHGLDDDMIRLVEKHH--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFK 912 (1636)
T ss_pred ----CchH-----HHHHHHhhCcchHHHHHHHHhC--hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHH
Confidence 3443 3678888888888888887753 442 35666667777788888888766544 3355
Q ss_pred HHHHHHHhcCChHHHhh
Q 039715 652 LLSNIYAMARSWEKAAS 668 (805)
Q Consensus 652 ~l~~~~~~~g~~~~a~~ 668 (805)
.-.|+|...|.|++|.+
T Consensus 913 aavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYR 929 (1636)
T ss_pred HHHHHhhhhhhHHHHHH
Confidence 66788888888888887
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.7e-08 Score=95.49 Aligned_cols=291 Identities=12% Similarity=0.091 Sum_probs=192.9
Q ss_pred ccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHH
Q 039715 219 FNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARR 298 (805)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 298 (805)
..|+|..|..+..+-.+.+-.|- ..|.....+.-+.|+.+.+-..+..+.+...+++..+.-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 56788888888877666654442 34555566667788888888888887777556667777777777777888777776
Q ss_pred HHhhCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCC
Q 039715 299 IFEEMP---KKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLL 375 (805)
Q Consensus 299 ~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 375 (805)
-.+++. .+++........+|.+.|++.+...++..|.+.|+--|... .++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l---------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL---------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH----------
Confidence 665543 34566677777788888888888888887777765433321 000
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 039715 376 SDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLR 452 (805)
Q Consensus 376 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 452 (805)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. .+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence 112334444444333444444445555553 356666677888888889999999888888887777622 223
Q ss_pred HHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHhHHHHHHHHHHhCCChHHHH
Q 039715 453 ACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN--DWNEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 453 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 530 (805)
.+.+.++.+.-.+..+...+.. +.++..+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+..+|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4556666666666665555543 3345777788888888888888888887665 457777777777888888887777
Q ss_pred HHHHHHHHcCCCC
Q 039715 531 KVFDLMQQRGWRP 543 (805)
Q Consensus 531 ~l~~~m~~~g~~p 543 (805)
+.+++.+..-..|
T Consensus 382 ~~r~e~L~~~~~~ 394 (400)
T COG3071 382 QVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHhcCC
Confidence 7777766433333
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.9e-09 Score=116.68 Aligned_cols=236 Identities=11% Similarity=0.016 Sum_probs=166.2
Q ss_pred ChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHh---------ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 039715 424 EVGKAMIMFSKMLEEQVPATEV-TYSSVLRACA---------SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG 493 (805)
Q Consensus 424 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 493 (805)
..++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++.+++.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356788888887764 45443 3333333322 2234678888888888776 456778888888899999
Q ss_pred CHHHHHHHhhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHH
Q 039715 494 SITDARLVFDMMND--W-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFK 569 (805)
Q Consensus 494 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 569 (805)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++.++...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998763 3 566888889999999999999999999998 567643 33334445666889999999998
Q ss_pred HHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 570 SMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSV-MIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 570 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
++... ..| ++..+..+...|...|++++|...++++ +..|+. ..++.+...|...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 87743 234 4556777888899999999999999876 344544 44666666666666 47777777777643333
Q ss_pred cchHHHHHHHHHhcCChHHHhh
Q 039715 647 EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 647 ~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.....+..+|+-.|+-+.+..
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~ 528 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKM 528 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHH
Confidence 3333347777777777776644
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=83.53 Aligned_cols=50 Identities=32% Similarity=0.571 Sum_probs=47.1
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 039715 508 WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSN 557 (805)
Q Consensus 508 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 557 (805)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-08 Score=94.54 Aligned_cols=280 Identities=9% Similarity=0.080 Sum_probs=202.5
Q ss_pred cCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh------hhHHHHHHHHHHcCChHHH
Q 039715 356 MEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK-RNH------VTWNTMIVGYVQLGEVGKA 428 (805)
Q Consensus 356 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~A 428 (805)
.++.++|...|-.|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-+.+.+ ||. .....|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467789999999998844 44566777899999999999999999988655 442 2344567778889999999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHhhh
Q 039715 429 MIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMD----VVVANALIDMYAKCGSITDARLVFDM 504 (805)
Q Consensus 429 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~ 504 (805)
..+|..+.+.+ .--......|+..|-...++++|.+.-..+.+.+-.+. ...|.-|...+....+.+.|...+.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998754 22344677888899999999999999888888765443 22355566677778889999999988
Q ss_pred cCCCC---HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh
Q 039715 505 MNDWN---EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI 581 (805)
Q Consensus 505 ~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 581 (805)
..+.| +..=-.+...+...|++..|++.++...+.+..--..+...|..+|.+.|+.+++...+..+.+. .+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCc
Confidence 87433 33444466778889999999999999988642222446777888899999999999999888744 4555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHh
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLI-EGIPFQPSVMIWRALLGACII---HNNVEIGRLSAQHIL 640 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~-~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 640 (805)
..-..|.+......-.++|...+ +.+.-+|+...+..|+..-.. .|...+....++.++
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 55556666655555566666554 456668888888888876432 233344444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-08 Score=104.18 Aligned_cols=232 Identities=16% Similarity=0.180 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCC----------CChh-hHHHHHHHHHHcCChHHHHHHHHHHhhcC---CCCCh
Q 039715 379 FVSNALMDVYAKCGRMENSVELFAESPK----------RNHV-TWNTMIVGYVQLGEVGKAMIMFSKMLEEQ---VPATE 444 (805)
Q Consensus 379 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~ 444 (805)
.+...|..+|...|+++.|..+|+...+ +.+. .-+.+...|...+++++|..+|+++...- .-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444466666666666666666644221 1222 23446677888888888888888875421 01111
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC----------CCHh-HH
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND----------WNEV-SW 513 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~~-~~ 513 (805)
+.-..+++.|..+|.+.|++++|...+++..+ +.+. ..
T Consensus 280 -------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 280 -------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred -------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 11123344444555555555555554443321 1121 34
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----C-CCCC-
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQR---GWRPNN----LTFVGVLSACSNGGLLEQGEAYFKSMVANY----G-IEPC- 580 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~- 580 (805)
+.++..+...+++++|..++++..+. -+.++. -++..+...+.+.|++++|.++|++++... + ..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 45566666777777777777765442 122332 367778888888888888888888876543 1 1222
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI--------PFQPSV-MIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
..+++.|...|.+.+++++|.++|.+. |..|++ .++..|...|+..|+++.|+++.++++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 356777888888888888888887754 345665 4799999999999999999999888874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-07 Score=98.62 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMV 588 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 588 (805)
..|......+...++.++|...+.+... +.|- ...|......+...|..++|.+.|.... .++|+ +....++.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHH
Confidence 3577777888999999999988888877 4453 3355555566778899999999998877 67885 57889999
Q ss_pred HHHHhcCCHHHHHH--HHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 589 SLLGRAGHLDKAAK--LIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 589 ~~~~~~g~~~eA~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.+|.+.|+..-|.. ++..+ ...| +...|-.|+....+.|+.++|.+.|..++++++.+|.
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999997766666 77655 4555 5679999999999999999999999999999987764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-06 Score=91.00 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 409 HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
+..|..+..+-.+.|...+|++-|-+. -|...|.-++..+.+.|.+++-..++..+.+..-+|. +-+.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHH
Confidence 456888888888888888888877553 3556788888888888888888888888777665544 44678888
Q ss_pred HHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHH
Q 039715 489 YAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKV 532 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 532 (805)
|++.+++.+-++++. .+|+.....+..-|...|.++.|.-+
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 888888887766543 23333333444444444444444333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-08 Score=103.28 Aligned_cols=234 Identities=9% Similarity=-0.040 Sum_probs=156.9
Q ss_pred CChHHHHHHHHHHhhcC-CCCCh--hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 039715 423 GEVGKAMIMFSKMLEEQ-VPATE--VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDAR 499 (805)
Q Consensus 423 g~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 499 (805)
+..+.++.-+.+++... ..|+. ..|......+...|+.++|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555666666665432 12221 235555556666777777777777776654 446788889999999999999999
Q ss_pred HHhhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Q 039715 500 LVFDMMND--W-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYG 576 (805)
Q Consensus 500 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 576 (805)
+.|++..+ | +..+|..++.++...|++++|++.|++..+ ..|+..........+...++.++|...|......
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 99998863 3 567888899999999999999999999998 5676542222222345567899999999775532
Q ss_pred CCCChHHHHHHHHHHHhcCCHHH--HHHHHHc-CC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCc
Q 039715 577 IEPCIEHYTSMVSLLGRAGHLDK--AAKLIEG-IP----FQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEP-EDE 647 (805)
Q Consensus 577 ~~p~~~~~~~li~~~~~~g~~~e--A~~~~~~-~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~ 647 (805)
..|+... ..++..+ .|++.+ +.+.+.+ .. ..| ....|..++..+...|+.++|+..|+++++++| +..
T Consensus 195 ~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3343322 2333333 444433 3333321 11 112 235799999999999999999999999999997 666
Q ss_pred chHHHHHHHHHhcCChH
Q 039715 648 ATHVLLSNIYAMARSWE 664 (805)
Q Consensus 648 ~~~~~l~~~~~~~g~~~ 664 (805)
++-..+..+....++.+
T Consensus 272 e~~~~~~e~~~~~~~~~ 288 (296)
T PRK11189 272 EHRYALLELALLGQDQD 288 (296)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 66666766665555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-07 Score=88.83 Aligned_cols=309 Identities=13% Similarity=0.117 Sum_probs=167.0
Q ss_pred ChHHHHHHHhhCCCC--CcccHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh--ccCCchHHHHHH
Q 039715 292 EISNARRIFEEMPKK--DVIPWSF-MIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACA--TMEGLDLGNQIH 366 (805)
Q Consensus 292 ~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~ 366 (805)
.+++|..++.++... +....|. |.-+|.+..-++-+.+++.--++. -||+ |+..=+.+|. +.=+-..+++-.
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHH
Confidence 477888888777543 3334443 344667777777777777666553 3343 3333333432 221222233223
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHhc-----CChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 039715 367 SLVVRVGLLSDVFVSNALMDVYAKC-----GRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVP 441 (805)
Q Consensus 367 ~~~~~~g~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 441 (805)
..+.+.+-..- -.+.-.++. ..-+.|++++-.+.+.=+..--.++--|.++++..+|..+.+++.- ..
T Consensus 243 k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--tt 315 (557)
T KOG3785|consen 243 KELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TT 315 (557)
T ss_pred HHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CC
Confidence 33332221110 011112221 1224455544333222222333455567788888888888776631 12
Q ss_pred CChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC----C-CHhHHHHH
Q 039715 442 ATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND----W-NEVSWNAM 516 (805)
Q Consensus 442 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~-~~~~~~~l 516 (805)
|-....-.+..+ ..| .-......+.-|.+.|+-.-+ . .+.--.+|
T Consensus 316 P~EyilKgvv~a--alG----------------------------Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 316 PYEYILKGVVFA--ALG----------------------------QETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hHHHHHHHHHHH--Hhh----------------------------hhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 222222222111 111 111111122333444433221 1 22234455
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-CChHHHHH-HHHHHHhc
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIE-PCIEHYTS-MVSLLGRA 594 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~-li~~~~~~ 594 (805)
.+.+.-..++++.+-.++....-- ..|..--..+..|.+..|.+.+|.++|-.+. +.+ .+..+|.+ |...|.++
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhc
Confidence 566666667777777777766642 3333444456778888899999999986654 333 34455554 46788999
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 595 GHLDKAAKLIEGIPFQPSVMIWRAL-LGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 595 g~~~eA~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
|..+-|++++-++....+..+.-.+ .+-|.+.+.+--|-++|..+..++|
T Consensus 442 kkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred CCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 9999999999888634455554444 4569999999999999999988988
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-06 Score=88.87 Aligned_cols=433 Identities=14% Similarity=0.149 Sum_probs=256.5
Q ss_pred HHHHhhh----ccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHH--HHH
Q 039715 212 RKVFDGL----FNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVA--LLD 285 (805)
Q Consensus 212 ~~~~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~ 285 (805)
..+|..+ .+|++++|+....++...+ +-|...+..=+-+..+.+.++.|..+.+. .+. ..+++. +=.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHH
Confidence 4445444 7899999999999998876 33445566667777788888888744332 221 111111 234
Q ss_pred HHH--cCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCCchHH
Q 039715 286 LYT--KSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPN-QFTFVSVLQACATMEGLDLG 362 (805)
Q Consensus 286 ~y~--~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a 362 (805)
+|| +.+..|+|...++.....+......-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-... .+
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~ 161 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV 161 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH
Confidence 444 779999999999966555555666666788899999999999999977653311 11122222221111 11
Q ss_pred HHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCChHHHHHHHhcC--------CCCC-----hhh-----HHHHHHHHHHc
Q 039715 363 NQIHSLVVRVGLLSD--VFVSNALMDVYAKCGRMENSVELFAES--------PKRN-----HVT-----WNTMIVGYVQL 422 (805)
Q Consensus 363 ~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~--------~~~~-----~~~-----~~~li~~~~~~ 422 (805)
. .+......|+ -..+-.....+...|++.+|+++++.. .+.| ... ---|.-.+...
T Consensus 162 ~----~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 162 Q----LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred H----HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 1222222221 122223445677899999999999775 2221 111 12233456678
Q ss_pred CChHHHHHHHHHHhhcCCCCChhhHHHH---HHHHhccCCchhH--HHHHHHHH-----------HcCCCCcHhHHHHHH
Q 039715 423 GEVGKAMIMFSKMLEEQVPATEVTYSSV---LRACASLAALEPG--MQVHCLTV-----------KANYDMDVVVANALI 486 (805)
Q Consensus 423 g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--~~~~~~~~-----------~~~~~~~~~~~~~li 486 (805)
|+.++|..++...+... .+|....... |.+...-.++-.+ ...++... ...-.....--+.++
T Consensus 238 Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998875 4454322222 1222222222221 11111110 000011122334555
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCC-HhHHHHHHH-HH-HhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCH
Q 039715 487 DMYAKCGSITDARLVFDMMNDWN-EVSWNAMIS-GY-SMHGLSAEVLKVFDLMQQRGWRPNN--LTFVGVLSACSNGGLL 561 (805)
Q Consensus 487 ~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~-~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~ 561 (805)
.+|. +..+.+.++-...+..- ...+.+++. ++ .+...+.+|.+++...-+. .|+. +.....+......|++
T Consensus 317 ~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 317 ALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCH
Confidence 5654 55667777766666432 333444433 32 2233577888888887764 4544 3344444556789999
Q ss_pred HHHHHHHH--------HHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCCH-HHHHHHHHHHH
Q 039715 562 EQGEAYFK--------SMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI--------PFQPSV-MIWRALLGACI 624 (805)
Q Consensus 562 ~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~~-~~~~~l~~~~~ 624 (805)
+.|.+++. .+. .+.-.+.+...++.+|.+.+..+-|..++.+. +..+.. .+|.-+...-.
T Consensus 393 ~~A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 99999998 443 23334566778889999888766666665533 222222 34445555556
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++|+.++|...++++++.+|++....+.+.-.|+... .+.|..
T Consensus 470 r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~ 512 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAES 512 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHH
Confidence 7899999999999999999999999999999888764 344443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.7e-09 Score=105.90 Aligned_cols=201 Identities=12% Similarity=0.032 Sum_probs=146.6
Q ss_pred CchhHHHHHHHHHHcC-CCC--cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHH
Q 039715 459 ALEPGMQVHCLTVKAN-YDM--DVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKV 532 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 532 (805)
..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455556666666432 222 245688888899999999999999998863 3678999999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-C-C
Q 039715 533 FDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-P-F 609 (805)
Q Consensus 533 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~ 609 (805)
|++.++ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. . .
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 6776 45778888889999999999999999884 4565432222333455678999999999654 2 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------ccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 610 QPSVMIWRALLGACIIHNNVEIGRLSAQHIL-------DFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.|+...| .......|+..++ ..++.+. ++.|+.+.+|..||.+|...|++++|..
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3333222 2223335555433 2333333 5667778899999999999999999988
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-08 Score=98.21 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=114.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 409 HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
...+..+...|...|++++|.+.|++..+.. |+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHH
Confidence 3456777777777888888888877776532 22 22333444445
Q ss_pred HHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHH
Q 039715 489 YAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 564 (805)
|...|++++|.+.|++..+ .+...+..+...+...|++++|++.|++.......| ....+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 234455555666666666666666666665532222 223444455556666777777
Q ss_pred HHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 565 EAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 565 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
...+++.... .| +...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+.++|....+.+.+
T Consensus 155 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 155 EKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777666532 23 3455666667777777777777766654 11 22445555666666677777777777666655
Q ss_pred cCC
Q 039715 642 FEP 644 (805)
Q Consensus 642 ~~p 644 (805)
..|
T Consensus 232 ~~~ 234 (234)
T TIGR02521 232 LFP 234 (234)
T ss_pred hCc
Confidence 443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=114.68 Aligned_cols=198 Identities=13% Similarity=0.039 Sum_probs=156.4
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHH---------hcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCCh
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYA---------KCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLS 526 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 526 (805)
.+++|...+++.++.. +.+...+..+..+|. ..+++++|...+++..+. +...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4578888888888765 334556666666554 234589999999988743 677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 039715 527 AEVLKVFDLMQQRGWRPNN-LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 527 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
++|+..|++.++ +.|+. ..+..+..++...|++++|...++++. .+.|+. ..+..+...+...|++++|...+
T Consensus 355 ~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999 56764 467778888999999999999999988 456653 23334455577789999999999
Q ss_pred HcCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 605 EGIP--FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 605 ~~~~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
+++- ..|+ +..+..+..++...|+.++|...++++....|++......|+..|...|+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 8762 1354 45677788888899999999999999999999888888899999988884
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-07 Score=98.80 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=91.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---cchHHHHHH
Q 039715 92 FATNVLLNVYVKLNRLPDATKLFDEMPE---RNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELN---PFAFTAFLK 165 (805)
Q Consensus 92 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~ 165 (805)
..|..|...|...-+...|.+.|++.-+ .+..+|-.+...|++..+++.|..+.-..-+ ..|- ...|..+--
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhccc
Confidence 5688899999888888899999998765 4566899999999999999999998333322 1111 112222222
Q ss_pred HHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh
Q 039715 166 VLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL 218 (805)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 218 (805)
.+.+.++...+..-++...+.. +-|...|..|..+|.++|++..|.++|++.
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 3445666666766677666655 457889999999999999999999999866
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=94.26 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN-LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVS 589 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 589 (805)
+...|.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+... .+.| +-.+.|..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345577889999999999999999999 56754 488888888999999999999999988 5677 4678899999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 590 LLGRAGHLDKAAKLIEGIPFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 590 ~~~~~g~~~eA~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
-++.+|++++|...|++.-..|+ ..+|.+++..-.+.|+.+.|...+++.++++|+.+.....++......|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999997732333 45899998888899999999999999999999999999999999999999999
Q ss_pred Hhh
Q 039715 666 AAS 668 (805)
Q Consensus 666 a~~ 668 (805)
|.-
T Consensus 192 Ar~ 194 (250)
T COG3063 192 ARL 194 (250)
T ss_pred HHH
Confidence 976
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-06 Score=88.76 Aligned_cols=492 Identities=12% Similarity=0.149 Sum_probs=235.4
Q ss_pred hCCCchHHHHHhccCCC-CCcc-hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHH
Q 039715 103 KLNRLPDATKLFDEMPE-RNTI-SFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVF 180 (805)
Q Consensus 103 ~~g~~~~A~~~f~~~~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 180 (805)
..|+++.|...++.... |+.. .|-.+...-...|++--|.+.|..+-. .++...+....++-
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai~d----------------vak~r~lhd~~eia 519 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGD----------------VAKARFLHDILEIA 519 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHH----------------HHHHHHHHHHHHHH
Confidence 45677777777766543 4544 466666666666666666666554422 01111111111222
Q ss_pred HHHH-HhC-CCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCC---------CCCCh-hhHHHH
Q 039715 181 ACVY-KLG-HDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVG---------FKPNN-FTFAFV 248 (805)
Q Consensus 181 ~~~~-~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g---------~~p~~-~t~~~l 248 (805)
++.. +.| -..+-+-..+++.+..+ ++.+|+.+|- .++..++|+.+++++.+-. -.|.. ..-.+-
T Consensus 520 deas~~~ggdgt~fykvra~lail~k--kfk~ae~ifl--eqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy 595 (1636)
T KOG3616|consen 520 DEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFL--EQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSY 595 (1636)
T ss_pred HHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHH--hcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHH
Confidence 2111 111 11222222333333322 4555555554 3444555555555543210 01111 111223
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhC--CCCCcccHHHHHHHHHhCCChhH
Q 039715 249 LKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEM--PKKDVIPWSFMIARYAQTDLSID 326 (805)
Q Consensus 249 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~ 326 (805)
++++...|+-+.|-++- .+.--.-+-|..|.+.|.+..|.+.-..- ...|......+..++.+..-+++
T Consensus 596 ~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydk 666 (1636)
T KOG3616|consen 596 LQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDK 666 (1636)
T ss_pred HHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHh
Confidence 34444444444433321 11111235577888888888877654322 12344445555566666666666
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHH-HHHH---------------------
Q 039715 327 AVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFV-SNAL--------------------- 384 (805)
Q Consensus 327 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~L--------------------- 384 (805)
|-++|+++.. +...+..+.+-..+-+|.++-+.. ++..++. -..-
T Consensus 667 agdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 667 AGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred hhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 6666666542 112222222222233333332221 1111111 0111
Q ss_pred -----HHHHHhcCChHHHHHHHhcCCCCChhh--HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhcc
Q 039715 385 -----MDVYAKCGRMENSVELFAESPKRNHVT--WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASL 457 (805)
Q Consensus 385 -----i~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 457 (805)
+.+-.....+.+|+.+++.+.++++.+ |..+...|...|+++.|.++|.+.- .+.-.+..|.+.
T Consensus 734 ~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~ 804 (1636)
T KOG3616|consen 734 CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKA 804 (1636)
T ss_pred hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcc
Confidence 222233344444445555444443332 3444445555555555555554321 123334445555
Q ss_pred CCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039715 458 AALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQ 537 (805)
Q Consensus 458 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 537 (805)
|+++.|.++-... .|.+.....|-+-..-+-+.|++.+|++++-.+..|+. -|..|-++|..++.+.+..+-
T Consensus 805 ~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~- 876 (1636)
T KOG3616|consen 805 GKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH- 876 (1636)
T ss_pred ccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-
Confidence 5555544433222 12222333344444444455555555555544444433 234455555555555544432
Q ss_pred HcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC---
Q 039715 538 QRGWRPNN--LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPS--- 612 (805)
Q Consensus 538 ~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~--- 612 (805)
.|+. .|...+..-+...|++..|...|-+.. -|.+-+.+|-..|.+++|..+-+.-. ..|
T Consensus 877 ----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k 941 (1636)
T KOG3616|consen 877 ----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEK 941 (1636)
T ss_pred ----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHH
Confidence 2332 355555666677777777777654432 35667788888888999888876432 112
Q ss_pred --HHHHHHHH------HHHHHcCCHHHHHHH------HHHHhc-----cCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 613 --VMIWRALL------GACIIHNNVEIGRLS------AQHILD-----FEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 --~~~~~~l~------~~~~~~g~~~~a~~~------~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|.--+ ..+.+||-.+.|+.. |+-+++ .....+..+.-++..+...|++++|.+
T Consensus 942 ~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 942 HVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred HHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhH
Confidence 23443222 335677877777653 222322 233456778889999999999999977
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.3e-06 Score=81.92 Aligned_cols=262 Identities=8% Similarity=-0.044 Sum_probs=149.2
Q ss_pred CCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHH---HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 039715 273 YEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSF---MIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSV 349 (805)
Q Consensus 273 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 349 (805)
++.|+.....+...|...|+.++|...|++...-|+.+... -.-.+.+.|++++...+...+.... .-....|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 56677788888888899999999999998776544443222 2233456777777777766665431 1112222222
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC--C-CChhhHHHHHHHHHHcCChH
Q 039715 350 LQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP--K-RNHVTWNTMIVGYVQLGEVG 426 (805)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~ 426 (805)
+...-...+++.|..+-++.++.+ +.+...+-.-...+...|+.++|.-.|+... . -+..+|.-|+..|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 222344566777777777776654 3333344334456667788888888887643 3 36778888888888888888
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHH-HHHh-ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhh
Q 039715 427 KAMIMFSKMLEEQVPATEVTYSSVL-RACA-SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDM 504 (805)
Q Consensus 427 ~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 504 (805)
||.-+-+...+. ++.+..+...+. ..|. ....-++|+.+++..++.. +.-....+.+...+...|+.+++..++++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 887766554432 222333333321 1221 1222345555555554443 22233444555555555555555555555
Q ss_pred cC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 505 MN--DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 505 ~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
.. .+|....+.|...+...+.+.+|++.|...+.
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 43 34555555555555555555555555555554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-05 Score=85.36 Aligned_cols=437 Identities=13% Similarity=0.051 Sum_probs=244.1
Q ss_pred cccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHH
Q 039715 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRI 299 (805)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 299 (805)
.++|...+.+.+.... +..-...|.....-.+...|+.++|.......++..+ .+.+.|..+.-.+-...++++|.+.
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHH
Confidence 4566666666666665 2222334444444445567777777777776666432 3455666666666666778888888
Q ss_pred HhhCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCC-C
Q 039715 300 FEEMPK---KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGL-L 375 (805)
Q Consensus 300 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~ 375 (805)
|..... .|...|.-+.-.-++.++++.....-.+..+.. .-....|..+..+.--.|+...|..+.+...+... .
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 876543 345556666666667777777777666666531 22334566666666777788888888877776552 3
Q ss_pred ccHHHHHHH------HHHHHhcCChHHHHHHHhcCCCC--Ch-hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhh
Q 039715 376 SDVFVSNAL------MDVYAKCGRMENSVELFAESPKR--NH-VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVT 446 (805)
Q Consensus 376 ~~~~~~~~L------i~~y~~~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 446 (805)
|+...+.-. .....+.|..++|.+.+...... |- ..-......+.+.+++++|..++..++.. .||..-
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~ 254 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLD 254 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHH
Confidence 444333322 23345667777777776655432 22 22234456677788888888888888775 577776
Q ss_pred HHHHHHHHh-cc-CCchhHHHHHHHHHHcC---CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCC-HhHHHHHHHHH
Q 039715 447 YSSVLRACA-SL-AALEPGMQVHCLTVKAN---YDMDVVVANALIDMYAKCGSITDARLVFDMMNDWN-EVSWNAMISGY 520 (805)
Q Consensus 447 ~~~ll~a~~-~~-~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~ 520 (805)
|.-.+..+. .. +..+....++....+.- ..|-....+.+ . ...-.+...+++..+.++. +..+..+.+.|
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-~---~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy 330 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-N---GEELKEIVDKYLRPLLSKGVPSVFKDLRSLY 330 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-C---cchhHHHHHHHHHHHhhcCCCchhhhhHHHH
Confidence 666555544 22 22222224444433321 11110000000 0 0011111222222222221 22233333333
Q ss_pred HhCCChHH----HHHHHHHHHHcC----------CCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHH
Q 039715 521 SMHGLSAE----VLKVFDLMQQRG----------WRPNNL--TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEH 583 (805)
Q Consensus 521 ~~~g~~~~----A~~l~~~m~~~g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 583 (805)
-.-.+.+- +..+...+-..| -+|... |+..+...+-+.|+++.|..+.+... +-.|+ ++.
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEl 407 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIEL 407 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHH
Confidence 22221111 111111111111 134433 44556667888999999999998877 55676 466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch-------HHH--
Q 039715 584 YTSMVSLLGRAGHLDKAAKLIEGIP--FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT-------HVL-- 652 (805)
Q Consensus 584 ~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~-- 652 (805)
|..=..++...|.+++|..++++.. -.||..+-.--..-..+.++.++|.++..+-.+-+-+-... |..
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 7677788888999999999998763 23454443333344456788888888877666544311111 111
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
=|..|.++|+|.+|.+
T Consensus 488 ~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 488 DGEAYLRQNKLGLALK 503 (700)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 2778999999999998
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-05 Score=89.00 Aligned_cols=157 Identities=13% Similarity=0.006 Sum_probs=99.2
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCc---chHHHHHH--HH
Q 039715 58 SYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNT---ISFVTTIQ--GY 132 (805)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~--~~ 132 (805)
.|..+...|...-+...|.+.|....+... .+...+..+...|++...++.|..+.-...+.+. ..||.+-+ .|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 466777777655577778888877776553 3566788888999999999998887433333211 12333333 45
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHH
Q 039715 133 TVSSQFVEAVGLFSTLHREGHELN-PFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFA 211 (805)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 211 (805)
.+.++...|+.-|+...+ +.|. ...|..+..+|.+.|.+..|.++|..+...... +.+.---...+-+..|.+.+|
T Consensus 573 Lea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHH
Confidence 667777777777777766 4453 347777778888888888888777776665421 222222222334455666666
Q ss_pred HHHHhhh
Q 039715 212 RKVFDGL 218 (805)
Q Consensus 212 ~~~~~~~ 218 (805)
...+..+
T Consensus 650 ld~l~~i 656 (1238)
T KOG1127|consen 650 LDALGLI 656 (1238)
T ss_pred HHHHHHH
Confidence 6666555
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-08 Score=97.10 Aligned_cols=218 Identities=14% Similarity=0.109 Sum_probs=127.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 039715 413 NTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKC 492 (805)
Q Consensus 413 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 492 (805)
+-|..+|.+.|.+.+|..-|+.-++. .|-..||..|-.+|.+...++.|..++..-++.- +.++...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l---------- 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYL---------- 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhh----------
Confidence 45667777777777777777766654 3333445445555555555555554444444331 2233333
Q ss_pred CCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 039715 493 GSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 493 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
.-+...+-..++.++|+++|+...+. .| +......+...|...++.+-|..+++++
T Consensus 294 ---------------------~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 294 ---------------------LGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ---------------------hhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 33444444455555555555555542 23 2223444444455555555555555555
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 572 VANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI---PFQPS--VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 572 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
..- |+ .+++.|..+.-.+.-.+++|-++.-|++. .-+|+ ..+|-.|.....--||+..|.+.|+-++.-+|++
T Consensus 351 Lqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 532 32 24445555555555555555555555433 11343 3468888777777888888888888888888888
Q ss_pred cchHHHHHHHHHhcCChHHHhh
Q 039715 647 EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 647 ~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+++++|+-+-.+.|+.++|..
T Consensus 429 ~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHH
Confidence 8888888888888888888866
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-08 Score=95.75 Aligned_cols=242 Identities=13% Similarity=0.130 Sum_probs=163.1
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHH-HHH
Q 039715 376 SDVFVSNALMDVYAKCGRMENSVELFAESPK--RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSS-VLR 452 (805)
Q Consensus 376 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~ 452 (805)
.|-.--+.+..+|.+.|.+.+|.+.|+...+ +-+.+|-.|-..|.+..+++.|+.+|.+-.+. .|-.+||.. ..+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 3444557899999999999999999987543 56778888999999999999999999998764 677777643 333
Q ss_pred HHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHH
Q 039715 453 ACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKV 532 (805)
Q Consensus 453 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 532 (805)
.+...++.+.+.+++..+.+.. + .|+.+...+..+|.-.++++-|+.+
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~-------------------------------~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-P-------------------------------INVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-C-------------------------------ccceeeeeeeeccccCCChHHHHHH
Confidence 3344444444444444444432 1 1344444555566667777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHcC-CC
Q 039715 533 FDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC--IEHYTSMVSLLGRAGHLDKAAKLIEGI-PF 609 (805)
Q Consensus 533 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~ 609 (805)
|+++++.|+. +...|+.+.-.|...+.+|-++.-|++.... .-.|+ ..+|-.|.....-.|++.-|...|+-. ..
T Consensus 347 YRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 347 YRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 7777777643 5566667666777777777777777776643 33343 356777777777777777777777633 22
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 610 QPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 610 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
.|+ ...++.|.-.-.+.|++++|...+..+-.+.|+-.+...+|
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 333 45677777777777788888877777777777655544433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.1e-05 Score=79.16 Aligned_cols=216 Identities=12% Similarity=0.058 Sum_probs=125.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHH--HHHHHHhcC
Q 039715 129 IQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTA--LIDAFSVCG 206 (805)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~~~g 206 (805)
+.-+..+|++++|.....+....+ +-|...+..=+-++++.+.++.|..+. .+.+. ..+++. +=.+||.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~i---kk~~~---~~~~~~~~fEKAYc~-- 89 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLI---KKNGA---LLVINSFFFEKAYCE-- 89 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHH---Hhcch---hhhcchhhHHHHHHH--
Confidence 456677889999999999998865 333446666666777888888777332 22221 111111 1233332
Q ss_pred CHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChh-hHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC-cHhHHHHHH
Q 039715 207 CVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNF-TFAFVLKACLGLDTIRVAKSAHGCALKTCYEM-DLYVAVALL 284 (805)
Q Consensus 207 ~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li 284 (805)
| +.+..++|+..+. |..++.. +...-...|.+.++++++..+|..+.+++.+. +...-..++
T Consensus 90 --------Y---rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 90 --------Y---RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred --------H---HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 2 3455556665555 3444333 55555667888999999999999998887432 233333333
Q ss_pred HHHHcCCChHHHHHHHhhCCCCCcccHHH---HHHHHHhCCChhHHHHHHHHHHHCCC-------CCCh------hH-HH
Q 039715 285 DLYTKSGEISNARRIFEEMPKKDVIPWSF---MIARYAQTDLSIDAVELFCRMRQAFV-------APNQ------FT-FV 347 (805)
Q Consensus 285 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~------~t-~~ 347 (805)
..-.. -.+. +.+..+.....+|.. ....+...|++.+|+++++...+.+. .-+. .+ -.
T Consensus 154 a~~a~----l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 154 AVAAA----LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHh----hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 22211 1121 344444443334433 34567788999999999988833210 0000 01 11
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCC
Q 039715 348 SVLQACATMEGLDLGNQIHSLVVRVGL 374 (805)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~g~ 374 (805)
-+.-.+...|+.++|.++|..+++...
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 222235677888889998888888774
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-05 Score=85.87 Aligned_cols=250 Identities=15% Similarity=0.134 Sum_probs=154.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYA 490 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 490 (805)
|.-+...|...|++++|++++++.++. .|+.+ .|..-...+-+.|++.+|.+..+...... ..|..+-+-.+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 355677888899999999999998875 56644 67777888899999999999999988876 447888888899999
Q ss_pred hcCCHHHHHHHhhhcCCCC------H----hHHH--HHHHHHHhCCChHHHHHHHHHHHHcC--CC-------------C
Q 039715 491 KCGSITDARLVFDMMNDWN------E----VSWN--AMISGYSMHGLSAEVLKVFDLMQQRG--WR-------------P 543 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~------~----~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g--~~-------------p 543 (805)
++|++++|.+++......+ . ..|- .-..+|.+.|++..|++.|....+.- +. .
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 9999999999987776543 1 1343 34678899999999988877765421 11 1
Q ss_pred CHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhcCCCCCh-----------HHHHHHHHHH---HhcCCHHHHHH
Q 039715 544 NNLTFVGVLSACSNGGL-------LEQGEAYFKSMVANYGIEPCI-----------EHYTSMVSLL---GRAGHLDKAAK 602 (805)
Q Consensus 544 ~~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~-----------~~~~~li~~~---~~~g~~~eA~~ 602 (805)
...+|..++...-+... ...|.+++-.+...-...... .--.-+..-- .+...-+++..
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22334444443222111 123344443333221000000 0000000000 11111112221
Q ss_pred HHH---------------cCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 603 LIE---------------GIP--FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 603 ~~~---------------~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
.-. .-+ ..||+. -..|+ ....=.++|.+.++-+.+..|++..+|..--.+|.+.|++--
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~-GekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPL-GEKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCcc-HHHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 110 001 222221 11122 122346889999999999999999999999999999999987
Q ss_pred Hhh
Q 039715 666 AAS 668 (805)
Q Consensus 666 a~~ 668 (805)
|.+
T Consensus 510 aLq 512 (517)
T PF12569_consen 510 ALQ 512 (517)
T ss_pred HHH
Confidence 764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-06 Score=84.00 Aligned_cols=181 Identities=13% Similarity=0.103 Sum_probs=110.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 039715 483 NALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGL-------SAEVLKVFDLMQQRGWRPNNL-TFVGVLSA 554 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 554 (805)
-.|+-.|.+.+++++|..+........+.-|-.-...++.+|+ ..-|.+.|+-.-+++..-|.+ --.++.++
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 3455568899999999998888765554444333334444443 344555665555555554433 23344455
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHH-cCCHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP--FQPSVMIWRALLGACII-HNNVEI 631 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~~~~~~-~g~~~~ 631 (805)
+.-...+|+.+.++..+..- =...|... -.+..+++..|++.||+++|-++. .-.|..+|.+++.-|.. .|+.+.
T Consensus 369 fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 55556788888888887632 23333333 357788889999999999988774 12456778877777655 455655
Q ss_pred HHHHHHHHhccC-CCC-cchHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFE-PED-EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|-. .+++.+ |.+ -..+-.+++.+.+++.+--|.+
T Consensus 447 AW~---~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 447 AWD---MMLKTNTPSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred HHH---HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 444443 222 2233456777777777666655
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-08 Score=101.08 Aligned_cols=208 Identities=15% Similarity=0.146 Sum_probs=144.5
Q ss_pred cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHH
Q 039715 457 LAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVF 533 (805)
Q Consensus 457 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~ 533 (805)
.|++.+|.-.|+..++.. +.+...|--|.......++-..|+..+.+..+. |....-+|...|...|.-.+|+.+|
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344444444444444443 334455555555555555555566665555432 4555666666777777777777777
Q ss_pred HHHHHcCCCCCHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 534 DLMQQRGWRPNNL---------TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 534 ~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
+.-+... |... .+..- +...+...+....++|-.+....+..+|+.++.+|+-+|--.|.+++|.+.|
T Consensus 377 ~~Wi~~~--p~y~~l~~a~~~~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 377 DKWIRNK--PKYVHLVSAGENEDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHhC--ccchhccccCccccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7665432 1100 00000 1112222344556666666656566688899999999999999999999999
Q ss_pred HcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 605 EGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 605 ~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.+ ..+|+ ..+||-|+..+..-.+.++|+.+|.+++++.|....+...||-.|...|.++||.+
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 965 56775 57899999999999999999999999999999999999999999999999999998
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.1e-05 Score=80.02 Aligned_cols=451 Identities=12% Similarity=0.121 Sum_probs=261.7
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHH
Q 039715 57 HSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE---RNTISFVTTIQGYT 133 (805)
Q Consensus 57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 133 (805)
..|...++.| ..+.+..+..+...+++..+ -...+.....-.+...|+-++|......-.. +..++|..+.-.+-
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~-eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKKFP-EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHhCC-ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 4456666655 46778888888888888433 2333333333345567899999887765543 45678999998888
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHH
Q 039715 134 VSSQFVEAVGLFSTLHREGHELNPF-AFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFAR 212 (805)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 212 (805)
...++++|++.|..... +.||.. .+.-+--.=++.++++.......+..+.. +.....|..+.-++.-.|+
T Consensus 87 ~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~----- 158 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGE----- 158 (700)
T ss_pred hhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHH-----
Confidence 89999999999999988 567654 44333333356667766666665555543 2333455555555555454
Q ss_pred HHHhhhccccHHHHHHHHHHHHHCC-CCCChhhHHHHH------HHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 039715 213 KVFDGLFNDCFEEALNFFSQMRAVG-FKPNNFTFAFVL------KACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLD 285 (805)
Q Consensus 213 ~~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 285 (805)
+..|..++++..+.. -.|+...|.... ......|.++.+.+.+...... +......--.-.+
T Consensus 159 ----------y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~ 227 (700)
T KOG1156|consen 159 ----------YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKAD 227 (700)
T ss_pred ----------HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHH
Confidence 445555555555443 245554444332 2334566666666555443222 1112223334556
Q ss_pred HHHcCCChHHHHHHHhhCCCCCcc--cHH-HHHHHHHhCCChhHHH-HHHHHHHHCC---CCCChhHHHHHHHHHhccCC
Q 039715 286 LYTKSGEISNARRIFEEMPKKDVI--PWS-FMIARYAQTDLSIDAV-ELFCRMRQAF---VAPNQFTFVSVLQACATMEG 358 (805)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~~~~--~~~-~li~~~~~~g~~~~A~-~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~ 358 (805)
.+.+.+++++|..++..+..+++. -|+ .+..++.+-.+.-+++ .+|....+.- -.|-.... +......-
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel 303 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----SVLNGEEL 303 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----HHhCcchh
Confidence 788889999999999988765443 333 3334443333333444 5555554321 11111111 11111222
Q ss_pred chHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHH----HHHHHhcC--------------CCCChhhHH--HHHHH
Q 039715 359 LDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMEN----SVELFAES--------------PKRNHVTWN--TMIVG 418 (805)
Q Consensus 359 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~----A~~~f~~~--------------~~~~~~~~~--~li~~ 418 (805)
.+.....+....+.|+++ ++..+...|-.-...+- +..+...+ ..|....|+ -++..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 233445555666666544 33334444422111110 11111111 123444454 46778
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 039715 419 YVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITD 497 (805)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 497 (805)
|-..|+++.|..+++..+.. .|+.+ -|..=.+.+.+.|.++.|..++....+.. .+|..+-.--+....+.+++++
T Consensus 381 ~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHH
Confidence 88889999999999888764 56555 44445577888889999988888888776 4566666566777778888888
Q ss_pred HHHHhhhcCCCC--Hh--------HHHHH--HHHHHhCCChHHHHHHHHHHHH
Q 039715 498 ARLVFDMMNDWN--EV--------SWNAM--ISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 498 A~~~~~~~~~~~--~~--------~~~~l--i~~~~~~g~~~~A~~l~~~m~~ 538 (805)
|.++.......+ .+ .|-.+ ..+|.+.|++.+|++-|.....
T Consensus 458 A~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 458 AEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 888876655321 11 34443 3456677777777766665543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-06 Score=80.98 Aligned_cols=191 Identities=12% Similarity=0.036 Sum_probs=130.1
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 530 (805)
|...|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+.|++.. ..+-...|....-+|.+|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333333333333333333333 3345566677777777777777777777665 235566777777788888888888
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 039715 531 KVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGIP 608 (805)
Q Consensus 531 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~ 608 (805)
..|++....-.-|. ..||..+.-+..+.|+.+.|..+|++.++ +.|+ ....-.|.....+.|++-+|..+++...
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 88888876422222 34777777666788888888888888773 4553 4567778888888888888888887652
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 609 --FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 609 --~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
..++..+.--.+..-...||.+.+-+.-.++-...|...+
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 2356655555566667788888888888888888886544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-05 Score=87.63 Aligned_cols=124 Identities=14% Similarity=0.181 Sum_probs=94.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSL 590 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 590 (805)
|.-+...|...|++++|+++.++.++ ..|..+ .|..-...+-+.|++++|.+.++... .+++ |...-+-.+..
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHHH
Confidence 34556778889999999999999998 567744 67777888999999999999998887 4565 44555566788
Q ss_pred HHhcCCHHHHHHHHHcCC---CCC--C----HHHH--HHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 591 LGRAGHLDKAAKLIEGIP---FQP--S----VMIW--RALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~~---~~p--~----~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
+.|+|++++|.+++.... ..| | ..+| ..-+.+|.+.|++..|+.-+..+.+
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 889999999999877552 111 1 1245 3445668999999999988877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.7e-06 Score=79.76 Aligned_cols=279 Identities=12% Similarity=0.138 Sum_probs=181.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHH---HHHHHcCChHHHHHHHHHHhhcCCCCChhhHH-HHHHHHhccC
Q 039715 383 ALMDVYAKCGRMENSVELFAESPKRNHVTWNTMI---VGYVQLGEVGKAMIMFSKMLEEQVPATEVTYS-SVLRACASLA 458 (805)
Q Consensus 383 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~ 458 (805)
-|...+.-.|++.+|+.-|....+-|+..|-++. ..|...|+...|+.-|.+.++ .+||...-. .-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 3455555667777777777777666666555543 467777777777777777665 356643211 1123355677
Q ss_pred CchhHHHHHHHHHHcCCCCc--Hh------------HHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMD--VV------------VANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYS 521 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~--~~------------~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 521 (805)
.++.|..=|..+++...... .. .....+.-+.-.|+...|+.....+.+ .|...+..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 77777777777776543211 11 111223345566888888888777763 37777777788888
Q ss_pred hCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChH----HHHHH---H-----
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIE----HYTSM---V----- 588 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l---i----- 588 (805)
..|.+..|+.=++..-+ +.. +..++.-+-..+...|+.+.++...++.+ .+.||.. +|..| +
T Consensus 201 ~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred hcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 88888888887777666 333 33455566666777888888877766666 5667642 22222 1
Q ss_pred -HHHHhcCCHHHHHHHHHcC-CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 589 -SLLGRAGHLDKAAKLIEGI-PFQPSV-----MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 589 -~~~~~~g~~~eA~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
....+.+++.++++-.++. ..+|.. .++..+-..++..|++-+|++...++++++|+|..++.--+.+|....
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 1233456666666655543 344441 124444455677889999999999999999999999999999999999
Q ss_pred ChHHHhh
Q 039715 662 SWEKAAS 668 (805)
Q Consensus 662 ~~~~a~~ 668 (805)
.+|+|..
T Consensus 356 ~YD~AI~ 362 (504)
T KOG0624|consen 356 MYDDAIH 362 (504)
T ss_pred HHHHHHH
Confidence 9999877
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00014 Score=79.02 Aligned_cols=331 Identities=14% Similarity=0.106 Sum_probs=176.1
Q ss_pred CChhhHHHHHHH--hhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC-----------C
Q 039715 54 FNSHSYATSLQS--CIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE-----------R 120 (805)
Q Consensus 54 ~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-----------~ 120 (805)
.|+.|-..++.. |..-|+.+.|.+-...+ .+-.+|..+.+++.+..+++-|.-.+..|.. .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 344444444432 44455665555443333 2345666777777776666666665555532 0
Q ss_pred Cc-chHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHH
Q 039715 121 NT-ISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALI 199 (805)
Q Consensus 121 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 199 (805)
|. ..=......-..-|..++|..+|++-.+ |..|=+.|-..|.+++|.++-+.--+..+. .+|-.-.
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA 865 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYA 865 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHH
Confidence 11 1111111112345666666666666655 233444455666666666554432222211 1222223
Q ss_pred HHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCC--------CCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 039715 200 DAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVG--------FKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKT 271 (805)
Q Consensus 200 ~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 271 (805)
.-+-..++++.|.+.|++... .|+++++-+.+.. -.-|...|.....-.-..|+.+.|..+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~----hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV----HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC----hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 333345666677776665421 2333333222210 112333444444445567888888888776543
Q ss_pred CCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 039715 272 CYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQ 351 (805)
Q Consensus 272 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 351 (805)
|-.++...|-.|+.++|.++-++- .|......|.+-|-..|++.+|+.+|.+.+. |...|+
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR 1001 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR 1001 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH
Confidence 346677777789999998887764 4666777888999999999999999987653 445555
Q ss_pred HHhccCC---------------chHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC-----------
Q 039715 352 ACATMEG---------------LDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP----------- 405 (805)
Q Consensus 352 ~~~~~~~---------------~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----------- 405 (805)
.|-..+- .-.|-..|+ +.|. -....+..|-|.|.+.+|+++-=+-.
T Consensus 1002 lcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1002 LCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 4433221 111122222 1121 11234556788888888876532111
Q ss_pred ---CCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 039715 406 ---KRNHVTWNTMIVGYVQLGEVGKAMIMFSK 434 (805)
Q Consensus 406 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 434 (805)
..|+...+--..-|..+.++++|..++-.
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12444455555556666667766665543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.5e-06 Score=85.98 Aligned_cols=207 Identities=11% Similarity=0.082 Sum_probs=104.5
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHh----------HHHHHH
Q 039715 448 SSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEV----------SWNAMI 517 (805)
Q Consensus 448 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li 517 (805)
..+.++..+..+++.+.+-+...+... .+..-++....+|...|.+.+....-+...+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555555666666666666666554 45555666666677666666655554443322111 222244
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHhcCC
Q 039715 518 SGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIE-HYTSMVSLLGRAGH 596 (805)
Q Consensus 518 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~ 596 (805)
.+|.+.++++.|+..|++.+..-..||..+ +....+++........ -+.|... -...=+.-+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 456666777777777777665544443221 1112222222222211 1223221 01111334445555
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 597 LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 597 ~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.+|+..+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544 2233 334555555555555666666655666666666555555555555555555555554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.9e-07 Score=82.34 Aligned_cols=124 Identities=10% Similarity=-0.006 Sum_probs=101.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-
Q 039715 530 LKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI- 607 (805)
Q Consensus 530 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~- 607 (805)
..+|++.++ +.|+. +.....++...|++++|...|+... .+.| +...|..++.++.+.|++++|...|++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 346666666 56664 4456667888999999999999887 4556 5678888999999999999999999876
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 608 PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 608 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
...| +...|..++.++...|+.++|+..+++++++.|+++..+...+++....
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 3344 5678999999999999999999999999999999999999998876543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-07 Score=92.73 Aligned_cols=236 Identities=11% Similarity=0.008 Sum_probs=107.6
Q ss_pred HHhcCChHHHHHHHhcCCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhH
Q 039715 388 YAKCGRMENSVELFAESPKR----NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPG 463 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 463 (805)
+.-.|.+..++.-.+ .... +.....-+.++|...|+++.++. ++.... .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 445677777775444 2111 22344556677777777665443 332222 45544444443333332222222
Q ss_pred HHHHHHHHHcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 039715 464 MQVHCLTVKANYD-MDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR 542 (805)
Q Consensus 464 ~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 542 (805)
..-+......... .+..+......+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+ +.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 2222222111111 22233333334455566666666665544 2333444445555555555555555555554 22
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHH
Q 039715 543 PNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP--FQPSVMIWRALL 620 (805)
Q Consensus 543 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~ 620 (805)
.| .+...+..++ +..+.-.+.+.+|..+|+++. +.+++.+.+.+.
T Consensus 162 eD-~~l~qLa~aw--------------------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 162 ED-SILTQLAEAW--------------------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp CC-HHHHHHHHHH--------------------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred Cc-HHHHHHHHHH--------------------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 22 2222222222 222211223444555544441 234455566666
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
.+....|++++|+..++++++.+|+++.+..+++-+....|+..+
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 666666666666666666666666666666666666666666633
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00014 Score=78.94 Aligned_cols=228 Identities=15% Similarity=0.156 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 039715 343 QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQL 422 (805)
Q Consensus 343 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 422 (805)
...|.-...-....|+.+.|..+|..... |-+++...|-.|+.++|-++-++- .|......+...|-..
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~ 980 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYEND 980 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhh
Confidence 34444444455566777777777665543 345666666677777777776553 3555666677777777
Q ss_pred CChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCch---------------hHHHHHHHHHHcCCCCcHhHHHHHHH
Q 039715 423 GEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALE---------------PGMQVHCLTVKANYDMDVVVANALID 487 (805)
Q Consensus 423 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---------------~a~~~~~~~~~~~~~~~~~~~~~li~ 487 (805)
|++.+|+..|.+.+ +|...|+.|-..+--+ .|-.+|+ +.|.. ..--+.
T Consensus 981 g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVm 1043 (1416)
T KOG3617|consen 981 GDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVM 1043 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHH
Confidence 88888887777664 3444444443322111 1112221 12211 122345
Q ss_pred HHHhcCCHHHHHHHhhhcCC--------------CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 488 MYAKCGSITDARLVFDMMND--------------WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
.|-|.|.+.+|+++--+-.+ .|+...+.-..-|..+.++++|..++-...+ |...+.
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alq 1114 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQ 1114 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHH
Confidence 68888888888776332221 2566666666777888889999888776654 445555
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGIP 608 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~ 608 (805)
.|...| +.-..++-+.|.-.-.-.|+ ......+.+.+.++|.+..|.+-|.+..
T Consensus 1115 lC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1115 LCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 665543 23333333333211111222 2456667788888888888888877664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-05 Score=83.48 Aligned_cols=249 Identities=11% Similarity=-0.021 Sum_probs=146.4
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhc----cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 039715 416 IVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACAS----LAALEPGMQVHCLTVKANYDMDVVVANALIDMYA 490 (805)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 490 (805)
...+...|++++|.+++++..+.. |+.. .+.. ...+.. .+..+.+.+.... .....+........+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHH
Confidence 334566788888888888877652 3332 3221 112222 3334444444333 11112223344556667788
Q ss_pred hcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHcCCCHHHH
Q 039715 491 KCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW-RPNN--LTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a 564 (805)
..|++++|.+.+++..+ .+...+..+...|...|++++|+..+++...... .|+. ..+..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 88899999888888763 3566778888888888999999998888877421 1222 2344566677888999999
Q ss_pred HHHHHHHHHhcCCCCChHHH-H--HHHHHHHhcCCHHHHHHH---HHc---C-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039715 565 EAYFKSMVANYGIEPCIEHY-T--SMVSLLGRAGHLDKAAKL---IEG---I-PFQPSVMIWRALLGACIIHNNVEIGRL 634 (805)
Q Consensus 565 ~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~eA~~~---~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~a~~ 634 (805)
..+++.........+..... + .+...+...|..+.+.++ ... . +.............++...|+.++|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 99888875321111111111 1 333344445533333333 111 1 111112223355566778889999998
Q ss_pred HHHHHhccCC---------CCcchHHHHHHHHHhcCChHHHhh
Q 039715 635 SAQHILDFEP---------EDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 635 ~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++.+....- .........+.++...|++++|.+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~ 328 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALE 328 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHH
Confidence 8887765321 134556778889999999999977
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-06 Score=86.65 Aligned_cols=218 Identities=9% Similarity=0.073 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhH-HHHHHHHhccC
Q 039715 380 VSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTY-SSVLRACASLA 458 (805)
Q Consensus 380 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~ 458 (805)
....+.++|.-.|+.+.++.-...-..|.......+...+...++-+.++.-+++.......++..++ ......+...|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 34455666777777776655554444555555544443333334455666666655544333222222 22334456678
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC--CHhH---HHHHHHHHHhCCChHHHHHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW--NEVS---WNAMISGYSMHGLSAEVLKVF 533 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~---~~~li~~~~~~g~~~~A~~l~ 533 (805)
+++.|.+++... .+.......+..|.+.++++.|.+.++.|.+. |... ..+.+..+...+++.+|..+|
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 888887765432 35666677899999999999999999999854 3221 222233333345688999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCH-HHHHHHHHcC
Q 039715 534 DLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHL-DKAAKLIEGI 607 (805)
Q Consensus 534 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~-~eA~~~~~~~ 607 (805)
+++.+. ..++..+.+.+..+....|++++|..++.+.. ...| ++.+...++-+..-.|+. +.+.+++.++
T Consensus 191 ~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al---~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 191 EELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL---EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 997664 46777788888888888899999988877765 3344 344555555555555555 4455555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.5e-05 Score=90.71 Aligned_cols=361 Identities=7% Similarity=-0.079 Sum_probs=202.1
Q ss_pred HHHHHHcCCChHHHHHHHhhCCCCCccc--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCch
Q 039715 283 LLDLYTKSGEISNARRIFEEMPKKDVIP--WSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLD 360 (805)
Q Consensus 283 li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 360 (805)
....|...|++.+|.............. .......+...|+++.+...++.+.......+..........+...++++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3444666777777777666655432211 11122344556777776666665522111112222233334445677888
Q ss_pred HHHHHHHHHHHhCCC------cc--HHHHHHHHHHHHhcCChHHHHHHHhcCC----CCCh----hhHHHHHHHHHHcCC
Q 039715 361 LGNQIHSLVVRVGLL------SD--VFVSNALMDVYAKCGRMENSVELFAESP----KRNH----VTWNTMIVGYVQLGE 424 (805)
Q Consensus 361 ~a~~~~~~~~~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~----~~~~~li~~~~~~g~ 424 (805)
++...+..+.+.--. +. ......+...+...|++++|...+++.. ..+. ..++.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 888887776543111 11 1222333455667888888888776632 2221 234556666777888
Q ss_pred hHHHHHHHHHHhhcCCC---CC--hhhHHHHHHHHhccCCchhHHHHHHHHHHc----CCC--C-cHhHHHHHHHHHHhc
Q 039715 425 VGKAMIMFSKMLEEQVP---AT--EVTYSSVLRACASLAALEPGMQVHCLTVKA----NYD--M-DVVVANALIDMYAKC 492 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~---p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~y~~~ 492 (805)
+++|...+.+.....-. +. ..++..+...+...|+++.|...+...... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 88888888887642111 11 123445556677788888888877765542 211 1 223344556667777
Q ss_pred CCHHHHHHHhhhcCC------C--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHcC
Q 039715 493 GSITDARLVFDMMND------W--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR-PNNLTF-----VGVLSACSNG 558 (805)
Q Consensus 493 g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~-----~~ll~a~~~~ 558 (805)
|++++|...+++... + ....+..+...+...|++++|...+++.....-. .....+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 888888877776532 1 1234444566777788888888888777542111 011111 0112333456
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC-HHHHHHHHHHHHHcC
Q 039715 559 GLLEQGEAYFKSMVANYGIEPC---IEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPS-VMIWRALLGACIIHN 627 (805)
Q Consensus 559 g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g 627 (805)
|..+.+.+++...... ..... ...+..+..++...|+.++|...+++. ...++ ..+...+..++...|
T Consensus 667 g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 667 GDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 7888887776554321 00000 011345566777788888888777654 11112 234555666677888
Q ss_pred CHHHHHHHHHHHhccCC
Q 039715 628 NVEIGRLSAQHILDFEP 644 (805)
Q Consensus 628 ~~~~a~~~~~~~~~~~p 644 (805)
+.++|...+++++++..
T Consensus 746 ~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 746 RKSEAQRVLLEALKLAN 762 (903)
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 88888888888887654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.2e-05 Score=79.12 Aligned_cols=252 Identities=13% Similarity=0.076 Sum_probs=117.7
Q ss_pred hccCCchHHHHHHHHHHHhCCCccHHHHHH---HHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHH
Q 039715 354 ATMEGLDLGNQIHSLVVRVGLLSDVFVSNA---LMDVYAKCGRMENSVELFAESPKRN---HVTWNTMIVGYVQLGEVGK 427 (805)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~ 427 (805)
...|+++.+..+++.+.+.. +.|...+.. +.......|..+.+.+.++.....+ ...+..+...+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 44556666666666665543 222222221 1111112344444444444322211 1223334445666666666
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC
Q 039715 428 AMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND 507 (805)
Q Consensus 428 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 507 (805)
|...+++..+.. |+ +...+..+...|...|++++|...+++...
T Consensus 133 A~~~~~~al~~~--p~----------------------------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 133 AEEAARRALELN--PD----------------------------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHhhC--CC----------------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 666666665532 22 233344455555555555555555554432
Q ss_pred C-----C--HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHH-H--HHHHHHHcCCCHHHHHHHHHHHHHhc-
Q 039715 508 W-----N--EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTF-V--GVLSACSNGGLLEQGEAYFKSMVANY- 575 (805)
Q Consensus 508 ~-----~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~-~--~ll~a~~~~g~~~~a~~~~~~m~~~~- 575 (805)
. + ...|..+...+...|++++|+.+|++.......+. .... . .++.-+...|..+.+.+. +.+....
T Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~ 255 (355)
T cd05804 177 TWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAA 255 (355)
T ss_pred ccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHH
Confidence 1 1 12344556666666777777777766644211111 1111 1 222223334433333332 1111100
Q ss_pred -CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCC---C------HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 576 -GIEP--CIEHYTSMVSLLGRAGHLDKAAKLIEGIP--FQP---S------VMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 576 -~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p---~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
.... ........+..+...|+.++|..+++.+. .+. . ....-....++...|+.++|.+.+..+++
T Consensus 256 ~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 256 WHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1010 11111245566677788888888776551 011 1 11222223346678899999988888876
Q ss_pred cC
Q 039715 642 FE 643 (805)
Q Consensus 642 ~~ 643 (805)
+-
T Consensus 336 ~a 337 (355)
T cd05804 336 DL 337 (355)
T ss_pred HH
Confidence 54
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.2e-05 Score=80.50 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=120.1
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCC--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCH
Q 039715 485 LIDMYAKCGSITDARLVFDMMNDW--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLL 561 (805)
Q Consensus 485 li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 561 (805)
+...|.+.++++.|...|.+.... +... ..+....++++...+...- +.|+.. ....-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 455788889999999999886532 2111 2233445566665555554 455543 222335567889999
Q ss_pred HHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039715 562 EQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQH 638 (805)
Q Consensus 562 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 638 (805)
..|...|.++++. .| |...|+...-.|.+.|.+.+|++=.+.. ...|+ ...|..-+.++....+++.|.+.|++
T Consensus 375 ~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999854 46 6788999999999999999998765543 34555 34677777778888899999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhc
Q 039715 639 ILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 639 ~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
.++++|++......+...+..+
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999888888877764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.3e-05 Score=92.79 Aligned_cols=349 Identities=11% Similarity=0.022 Sum_probs=216.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHH----HHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 039715 314 MIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVL----QACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYA 389 (805)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 389 (805)
....+...|++.+|+...... +|......++ ......|+++.....+..+.......+..........+.
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAA------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHC------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 344566677777776644433 1222222222 223445666666666554421111122223344555667
Q ss_pred hcCChHHHHHHHhcCC----CC----C--hh--hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh----hhHHHHHHH
Q 039715 390 KCGRMENSVELFAESP----KR----N--HV--TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE----VTYSSVLRA 453 (805)
Q Consensus 390 ~~g~~~~A~~~f~~~~----~~----~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a 453 (805)
..|++++|...++... .. + .. ....+...+...|++++|...+++....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 7899999888876532 11 1 11 1122334566799999999999998763212221 234455566
Q ss_pred HhccCCchhHHHHHHHHHHc----CCC-CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----------CHhHHHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKA----NYD-MDVVVANALIDMYAKCGSITDARLVFDMMNDW-----------NEVSWNAMI 517 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li 517 (805)
+...|+++.|...+...... |.. ........+...+...|++++|...+++.... ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 77899999999998877653 211 12345566777889999999999988765421 122345566
Q ss_pred HHHHhCCChHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHH-----HHHH
Q 039715 518 SGYSMHGLSAEVLKVFDLMQQRG--WRPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHY-----TSMV 588 (805)
Q Consensus 518 ~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li 588 (805)
..+...|++++|...+++..... ..+. ...+..+.......|+.++|...++.+............+ ....
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 67778899999999999876531 1222 2234445566778999999999998876431111111111 1122
Q ss_pred HHHHhcCCHHHHHHHHHcCCCC--CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCcchHHHHHHH
Q 039715 589 SLLGRAGHLDKAAKLIEGIPFQ--PSV----MIWRALLGACIIHNNVEIGRLSAQHILDFEP------EDEATHVLLSNI 656 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~ 656 (805)
..+...|+.++|.+++...... ... ..+..+..++...|+.++|...++++++... +...++..++.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 4455689999999998765311 111 1245666778889999999999999987522 233467788999
Q ss_pred HHhcCChHHHhh
Q 039715 657 YAMARSWEKAAS 668 (805)
Q Consensus 657 ~~~~g~~~~a~~ 668 (805)
|...|+.++|..
T Consensus 741 ~~~~G~~~~A~~ 752 (903)
T PRK04841 741 YWQQGRKSEAQR 752 (903)
T ss_pred HHHcCCHHHHHH
Confidence 999999999987
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00013 Score=71.55 Aligned_cols=193 Identities=10% Similarity=0.051 Sum_probs=126.6
Q ss_pred hccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHH
Q 039715 455 ASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLK 531 (805)
Q Consensus 455 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 531 (805)
...|+...++.....+++.. +.|...+..-.++|...|++..|+.-+.... ..+....--+-..+-..|+.+.++.
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555555555443 4566666666777777777777766554443 3455566666666677777777777
Q ss_pred HHHHHHHcCCCCCHHH----HHH-------HHH--HHHcCCCHHHHHHHHHHHHHhcCCCCCh-----HHHHHHHHHHHh
Q 039715 532 VFDLMQQRGWRPNNLT----FVG-------VLS--ACSNGGLLEQGEAYFKSMVANYGIEPCI-----EHYTSMVSLLGR 593 (805)
Q Consensus 532 l~~~m~~~g~~p~~~t----~~~-------ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~ 593 (805)
..++-++ +.||... |-. +-+ .....+++.++.+-.+...+ ..|.. ..+..+-..+..
T Consensus 245 ~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 245 EIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccc
Confidence 7777776 5676432 111 111 23455677777777777663 34541 233444566778
Q ss_pred cCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 594 AGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 594 ~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
.|++-||+....++ .+.|| +.++.--..+|.....++.|+.-|+++.+.+|++..+-..+
T Consensus 320 d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 89999999888765 45665 66787778889889999999999999999999887665444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0024 Score=66.85 Aligned_cols=150 Identities=14% Similarity=0.089 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 425 VGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDM-DVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
.+.....++++...-..--..+|...++.-.+..-++.|+.+|.++.+.+..+ ++.++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 34444555555443222222345556666666666666777777666655444 66666666666654 55566666665
Q ss_pred hcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 039715 504 MMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL--TFVGVLSACSNGGLLEQGEAYFKSMVANY 575 (805)
Q Consensus 504 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 575 (805)
--.++ +..--+..+.-+...++-..|..+|++.+..++.|+.. .|..+|.-=+.-|++....++-+++...+
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 44422 22333344444455555555666666665554444432 45555555555555555555555554443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.2e-05 Score=71.36 Aligned_cols=347 Identities=14% Similarity=0.093 Sum_probs=186.9
Q ss_pred CCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC--CcccHH-HH
Q 039715 238 FKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK--DVIPWS-FM 314 (805)
Q Consensus 238 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~-~l 314 (805)
+.....-+.+++..+.+..++..+.+++..-.+.. +.+..-.+.|...|-...++..|...++++... ...-|. --
T Consensus 6 ~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 6 AQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred ccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 33334446666666677777777777776665553 224455566667777777788888777776542 111222 22
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH--HhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 039715 315 IARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQA--CATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCG 392 (805)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 392 (805)
...+.+.+.+.+|+.+...|.+. |+...-..-+.+ .-+.+++-.++.+.++.... .+..+.+.......+.|
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeeccc
Confidence 35566677777888777777542 222111111222 12345555555555544321 23334444444555666
Q ss_pred ChHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhh----HHHHHHHHhccCCchhHH
Q 039715 393 RMENSVELFAESPK----RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVT----YSSVLRACASLAALEPGM 464 (805)
Q Consensus 393 ~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~ 464 (805)
+++.|.+-|+...+ .....||.-+..| +.|+++.|+++..++++.|++..... -.-.+. ...+..-.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~ 233 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTL 233 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchH
Confidence 77777766665443 2334555444333 45666677777777666665422110 000000 00000000
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 039715 465 QVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW-----NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR 539 (805)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 539 (805)
.++... -+..+|.-...+.+.|+.+.|.+.+..|+.+ |++|...+.-.- ..+++.+..+-++-+++.
T Consensus 234 ~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 VLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 011100 0122333344577889999999999999854 777777664332 245566666666666664
Q ss_pred CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 540 GWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI-EPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 540 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
.| -..||..++-.|++..-++.|-.++-+-... .. -.+...|+.|=.+..-.-..++|.+-++.+
T Consensus 306 --nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 306 --NPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred --CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44 4569999999999998888888775431100 00 012233333322233455777777666544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.9e-06 Score=85.23 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=147.3
Q ss_pred hccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHH
Q 039715 354 ATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMI 430 (805)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 430 (805)
.+.|++.+|.-.|+..++.+ +.+...|..|.......++-..|+..+++..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566666666666666655 45566677777777777776666666665433 355666677777888888888888
Q ss_pred HHHHHhhcCCC--------CChhhHHHHHHHHhccCCchhHHHHHHHH-HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 039715 431 MFSKMLEEQVP--------ATEVTYSSVLRACASLAALEPGMQVHCLT-VKANYDMDVVVANALIDMYAKCGSITDARLV 501 (805)
Q Consensus 431 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 501 (805)
.|+.-+....+ ++..+-.. ........+....++|-.+ ...+..+|+.+...|.-.|--.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88877553210 00000000 0111111222333444333 4455558888999999999999999999999
Q ss_pred hhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 039715 502 FDMMND--W-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMV 572 (805)
Q Consensus 502 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 572 (805)
|+.... | |...||.|...++...+.++|++.|++.++ ++|+-+ ....|.-+|...|.+++|..+|=.++
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 998873 3 788999999999999999999999999999 889865 44455567999999999999876655
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00021 Score=68.64 Aligned_cols=236 Identities=13% Similarity=0.052 Sum_probs=134.3
Q ss_pred cCCChHHHHHHHhhCCC-CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHH
Q 039715 289 KSGEISNARRIFEEMPK-KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHS 367 (805)
Q Consensus 289 ~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 367 (805)
..+++..+..+.++.+. .+..+.+...-...+.|++++|++-|+...+-+---....|+..+..+ +.++...|.+...
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHH
Confidence 45777778888888773 555566666666677888888888888877654333445566555443 5577888888888
Q ss_pred HHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHhh-cC
Q 039715 368 LVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKR-------NHVTWNTMIVGYVQLGEVGKAMIMFSKMLE-EQ 439 (805)
Q Consensus 368 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g 439 (805)
++++.|+...+...- |..-+... .+.+..+ =+..+|.-...+.+.|+++.|.+.+..|.- ..
T Consensus 203 EIieRG~r~HPElgI---------Gm~tegiD-vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE 272 (459)
T KOG4340|consen 203 EIIERGIRQHPELGI---------GMTTEGID-VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE 272 (459)
T ss_pred HHHHhhhhcCCccCc---------cceeccCc-hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc
Confidence 888777532211100 00000000 0000000 012344444556677778878777777742 22
Q ss_pred CCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----CHhHHH
Q 039715 440 VPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW-----NEVSWN 514 (805)
Q Consensus 440 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~ 514 (805)
...|.+|...+.-.- -.+++..+..-+..+...+. ....++..++-.|||..-++-|-.++.+-... +...|+
T Consensus 273 ~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~ 350 (459)
T KOG4340|consen 273 EELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD 350 (459)
T ss_pred ccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH
Confidence 345666665543211 12345556666666666643 34567777888888888888888888765432 344444
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQ 537 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~ 537 (805)
.+=..-...-..++|++-++.+.
T Consensus 351 LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 351 LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Confidence 33332233445666665555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.5e-06 Score=81.24 Aligned_cols=171 Identities=13% Similarity=0.040 Sum_probs=111.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---C---HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH----H
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMNDW---N---EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL----T 547 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 547 (805)
....+..++..|.+.|++++|...|+++... + ...|..+..+|...|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 4556677777788888888888888876532 2 136677778888888888888888888873 44322 3
Q ss_pred HHHHHHHHHcC--------CCHHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHH
Q 039715 548 FVGVLSACSNG--------GLLEQGEAYFKSMVANYGIEPCIE-HYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRA 618 (805)
Q Consensus 548 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ 618 (805)
+..+..++... |+.++|.+.|+.+... .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44444455443 6677788888877744 34322 22211111 0011100 001224
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEPED---EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...+...|++++|+..++++++..|++ +..+..++.+|...|++++|..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5566788899999999999999987765 4688899999999999999866
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-07 Score=59.67 Aligned_cols=33 Identities=39% Similarity=0.580 Sum_probs=24.8
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHhccCC
Q 039715 86 GNCLDLFATNVLLNVYVKLNRLPDATKLFDEMP 118 (805)
Q Consensus 86 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 118 (805)
|+.||+++||.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777774
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.1e-05 Score=79.59 Aligned_cols=196 Identities=12% Similarity=0.039 Sum_probs=130.6
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCCh--HHHHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG-SITDARLVFDMMND---WNEVSWNAMISGYSMHGLS--AEVLKV 532 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l 532 (805)
..+.|......+++.+ +.+..+|+....++.+.| ++++++..++++.+ ++..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3444444444444433 223344544444555555 46777777777653 3556677666556666653 677888
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhc---CCH----HHHHHH
Q 039715 533 FDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRA---GHL----DKAAKL 603 (805)
Q Consensus 533 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~----~eA~~~ 603 (805)
++++++ ..| |..+|.....++.+.|+++++++.++++++. .| +...|+....++.+. |.. +++.++
T Consensus 131 ~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 131 TRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 888887 455 4557777777778888888888888888743 34 455666665555444 222 456666
Q ss_pred HH-cCCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 604 IE-GIPFQP-SVMIWRALLGACIIH----NNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 604 ~~-~~~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
.. .+...| |...|+.+.+.+..+ ++..+|...+.+++..+|+++.++..|+++|...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 63 444455 567899999998874 3457799999999999999999999999999863
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.1e-06 Score=79.46 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHH
Q 039715 542 RPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI--PFQPSVMIWRAL 619 (805)
Q Consensus 542 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~l 619 (805)
.|+......+-.++...|+-+....+....... -..+......++....+.|++.+|...|.+. +-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 454333344555566667766666666554422 2224455555777777777777777777765 234566777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 620 LGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 620 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.+|.+.|+.++|...+.+++++.|+++.++.+|+..|.-.|++++|..
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence 7777777777777777777777777777777777777777777777776
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-06 Score=77.22 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 566 AYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 566 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
.+++... .+.|+ .+..+...+...|++++|...|+.. ...| +...|..++.++...|++++|+..++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455554 34555 3567888999999999999999976 3445 67799999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHhh
Q 039715 644 PEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 644 p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+++.++..+|.+|...|++++|..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999988
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-05 Score=79.11 Aligned_cols=182 Identities=12% Similarity=0.027 Sum_probs=129.1
Q ss_pred ChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CH---hHHH
Q 039715 443 TEVTYSSVLRACASLAALEPGMQVHCLTVKANYDM--DVVVANALIDMYAKCGSITDARLVFDMMNDW---NE---VSWN 514 (805)
Q Consensus 443 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~~ 514 (805)
....+..+...+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+++.+. +. ..|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 34467777888999999999999999998865321 2246788899999999999999999998643 22 2566
Q ss_pred HHHHHHHhC--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHH
Q 039715 515 AMISGYSMH--------GLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTS 586 (805)
Q Consensus 515 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 586 (805)
.+..++.+. |++++|++.|+++... .|+.......+..... .. .. . ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~---~~------~~-~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY---LR------NR-L--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH---HH------HH-H--------HHHHHH
Confidence 666777655 7899999999999984 5664322111111000 00 00 0 011235
Q ss_pred HHHHHHhcCCHHHHHHHHHcC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI----PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
+...|.+.|++++|...+++. |..|. ...|..++.++...|++++|...++.+..-.|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 677889999999999988865 32343 46889999999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.5e-05 Score=73.64 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=110.8
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHH
Q 039715 486 IDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 564 (805)
+-+|.+.|+++....-.+.+..+. ..|...++.++++..+++.++. .| |...|..+...+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 446777788777654443322111 0122356677888888887774 45 455777788888889999999
Q ss_pred HHHHHHHHHhcCCCC-ChHHHHHHHHHH-HhcCC--HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039715 565 EAYFKSMVANYGIEP-CIEHYTSMVSLL-GRAGH--LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQH 638 (805)
Q Consensus 565 ~~~~~~m~~~~~~~p-~~~~~~~li~~~-~~~g~--~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 638 (805)
...|++.. .+.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99988877 3456 567788888764 67777 58899988876 3445 567888888889999999999999999
Q ss_pred HhccCCCCcchHHHH
Q 039715 639 ILDFEPEDEATHVLL 653 (805)
Q Consensus 639 ~~~~~p~~~~~~~~l 653 (805)
++++.|.+..-+..+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999888776655444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.8e-07 Score=57.64 Aligned_cols=33 Identities=27% Similarity=0.549 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 039715 576 GIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP 608 (805)
Q Consensus 576 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~ 608 (805)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-05 Score=85.16 Aligned_cols=216 Identities=13% Similarity=0.134 Sum_probs=141.7
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 039715 374 LLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRA 453 (805)
Q Consensus 374 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 453 (805)
++|--.....+...+.+.|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+..+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455556677888899999999999999875 3577888899999998889888888776 36777777777777
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 530 (805)
..+..-+++|.++.+..... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 66666666666666544322 1111222223356677777777654432 3456666666666777777777
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 531 KVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
+.|..-.. ..||.. .|+.+-.++.+.|.-.+|...+++..+- + .-+...|...+-...+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 77776666 566544 5677766777777777777766666632 3 333444555555566666666666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.1e-05 Score=85.95 Aligned_cols=138 Identities=14% Similarity=0.058 Sum_probs=106.2
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTS 586 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 586 (805)
++..+-.|.....+.|++++|..+++...+ +.||.. ....+..++.+.+++++|+...++.. ...| +..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 566777778888888888888888888888 678765 56667777888888888888888877 3456 4567777
Q ss_pred HHHHHHhcCCHHHHHHHHHcCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 587 MVSLLGRAGHLDKAAKLIEGIP-FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
+...+.+.|++++|.++|+++- ..|+ ...|.++..++...|+.++|..+|+++++...+....|.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 7888888888888888888762 2444 567888888888888888888888888887665555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.8e-06 Score=73.66 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
+.+..-.+...+...|++++|..+|+-+ ...| +..-|-.|+..|...|++++|+.+|.++..++|+++.++.++|.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455666777888999999999999966 2345 5678999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHhh-cCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHH
Q 039715 658 AMARSWEKAAS-KEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKS 709 (805)
Q Consensus 658 ~~~g~~~~a~~-~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~ 709 (805)
...|+.+.|.+ -...+.|. ..+|+..++..+.+.....+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-------------~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-------------GEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-------------ccChhHHHHHHHHHHHHHHh
Confidence 99999999988 11112221 24577777766655554444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4e-05 Score=86.80 Aligned_cols=125 Identities=15% Similarity=0.006 Sum_probs=110.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHH
Q 039715 541 WRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWR 617 (805)
Q Consensus 541 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~ 617 (805)
...+...+..|..+..+.|.+++|..+++... .+.|+ ......++..+.+.++++||+..+++. +..|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 44457788889999999999999999999988 56786 467778899999999999999999976 55675 45677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 618 ALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 618 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+..++...|++++|+.+|+++++..|+++.+++.++.++...|+.++|..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 777888999999999999999999999999999999999999999999987
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-05 Score=73.64 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=108.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG 595 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 595 (805)
+..|...|+++....-.+.+.. |. ..+...+..+++...++...+ ..| +...|..|+..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4568899998886544433221 21 012235677888877777764 345 6789999999999999
Q ss_pred CHHHHHHHHHcC-CCCC-CHHHHHHHHHH-HHHcCC--HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 596 HLDKAAKLIEGI-PFQP-SVMIWRALLGA-CIIHNN--VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 596 ~~~eA~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++|...+++. ...| +...|..+..+ +...|+ .++|..+++++++.+|+++.++..|+..+...|++++|..
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999976 3455 56788888887 467777 5999999999999999999999999999999999999988
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0068 Score=63.62 Aligned_cols=77 Identities=9% Similarity=0.022 Sum_probs=45.0
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHH
Q 039715 53 EFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTISFVTTIQ 130 (805)
Q Consensus 53 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 130 (805)
+-|..+|+.+++-+..+ ..++++..++++...- ..+...|..-|..-.+..+++...++|.+-.. -|+..|..-|.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34556666666665544 6666666666665432 23445566666666666666666666665432 35555655554
Q ss_pred H
Q 039715 131 G 131 (805)
Q Consensus 131 ~ 131 (805)
-
T Consensus 95 Y 95 (656)
T KOG1914|consen 95 Y 95 (656)
T ss_pred H
Confidence 3
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.015 Score=64.82 Aligned_cols=513 Identities=12% Similarity=0.052 Sum_probs=254.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH--HhCCCchHHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHH
Q 039715 68 QNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVY--VKLNRLPDATKLFDEMPE---RNTISFVTTIQGYTVSSQFVEAV 142 (805)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 142 (805)
..+++..|.+-...+.+..+. ..|...+.++ .+.|+.++|..+++.... .|..+...+-..|...|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 456788888888888777542 2344444444 578999999988887643 36668888889999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCC-HHHHHHHHhhhccc
Q 039715 143 GLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGC-VEFARKVFDGLFND 221 (805)
Q Consensus 143 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~g 221 (805)
.+|++... .-|+..-...+..++.+.+++..-.++--++.+ .++...+.+=++++.+...-. .+.+.. .|
T Consensus 98 ~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~---~i--- 168 (932)
T KOG2053|consen 98 HLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLD---PI--- 168 (932)
T ss_pred HHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCccccc---ch---
Confidence 99999877 557777777888888888776655444444444 234455555555555554321 111111 00
Q ss_pred cHHHHHHHHHHHHHCC-CCCChhhHHHHHHHhhCCCCHHHHHHHHHHH-HHhCCCCcHhHHHHHHHHHHcCCChHHHHHH
Q 039715 222 CFEEALNFFSQMRAVG-FKPNNFTFAFVLKACLGLDTIRVAKSAHGCA-LKTCYEMDLYVAVALLDLYTKSGEISNARRI 299 (805)
Q Consensus 222 ~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 299 (805)
...-|.+.++.+.+.+ ---+..-...-+..+...|+.++|..++..- .+.-...+...-+.-++++...+++.+-.++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 0112333444444332 1111111222223334456666666666332 2222333444445556666666666665555
Q ss_pred HhhCCCCCcccHHHHHHHHHh----------------CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc---cCCch
Q 039715 300 FEEMPKKDVIPWSFMIARYAQ----------------TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACAT---MEGLD 360 (805)
Q Consensus 300 f~~~~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~ 360 (805)
-.++..++..-|...++.+.+ .+..+...+..++..... ..-+|..-+.+..+ .|+.+
T Consensus 249 ~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~e 325 (932)
T KOG2053|consen 249 SSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSE 325 (932)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChH
Confidence 444433322223333222111 111222222222222110 12233333343333 35555
Q ss_pred HHHHHHHHHHHhCCCc----c---------HHHHHHHHHHHHhcCChH-HHHHHHhcCCCCChhhHHHHHHHHHHcC---
Q 039715 361 LGNQIHSLVVRVGLLS----D---------VFVSNALMDVYAKCGRME-NSVELFAESPKRNHVTWNTMIVGYVQLG--- 423 (805)
Q Consensus 361 ~a~~~~~~~~~~g~~~----~---------~~~~~~Li~~y~~~g~~~-~A~~~f~~~~~~~~~~~~~li~~~~~~g--- 423 (805)
++...| ..+.|-.| | +.-...+++++....+.. .+.++... +...+..-.-.|
T Consensus 326 e~~~~y--~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~--------h~c~l~~~rl~G~~~ 395 (932)
T KOG2053|consen 326 EMLSYY--FKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ--------HLCVLLLLRLLGLYE 395 (932)
T ss_pred HHHHHH--HHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH--------HHHHHHHHHHhhccc
Confidence 443332 22223222 1 111222333332221111 11111100 001111111111
Q ss_pred --ChHHHHHHHHHHh---------hcCCCCChhh---------HHHHHHHHhccCCchhHH---HHHHHHHHcCCCCcHh
Q 039715 424 --EVGKAMIMFSKML---------EEQVPATEVT---------YSSVLRACASLAALEPGM---QVHCLTVKANYDMDVV 480 (805)
Q Consensus 424 --~~~~A~~~~~~m~---------~~g~~p~~~t---------~~~ll~a~~~~~~~~~a~---~~~~~~~~~~~~~~~~ 480 (805)
..+.-..++++.. ..+.-|+..+ .+.++..|.+.++..... -+++...... +.|..
T Consensus 396 ~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~ 474 (932)
T KOG2053|consen 396 KLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQ 474 (932)
T ss_pred cCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHH
Confidence 1122222222221 1223444433 345667777777766333 3333333332 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCCC----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMNDW----NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS 556 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 556 (805)
+--.||..|+--|-+..|.++|..+.-+ |...|- +..-+...|++..+...++....---..-..+--.+..||.
T Consensus 475 ~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr 553 (932)
T KOG2053|consen 475 TKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYR 553 (932)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 6667889999999999999999988744 333332 23445567788877777776554210001112223334443
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC
Q 039715 557 NGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQP 611 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 611 (805)
.|.+.+..++. .+.++ +.-+ ..+-+..++.+...++.++-...++.|...|
T Consensus 554 -~g~ySkI~em~-~fr~r--L~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 554 -RGAYSKIPEML-AFRDR--LMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPP 609 (932)
T ss_pred -cCchhhhHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCc
Confidence 36665554432 22221 1111 2344556778888999999988888875333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00012 Score=69.59 Aligned_cols=151 Identities=11% Similarity=0.095 Sum_probs=95.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLG 592 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 592 (805)
..+-..+...|+.+.+..+..+... ..| |.......+......|++.+|...|++... .-.+|.+.|+.+.-.|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 4444555566666666666555443 122 223333455566666777777777666652 22335667777777777
Q ss_pred hcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 593 RAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 593 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.|++++|..-|.+. .+.| ++.+.++|+..+...||.+.|+..+..+....|.++..-..|+-+....|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 777777776666544 3333 355677777777777777777777777777777777777777777777777777766
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.5e-05 Score=84.03 Aligned_cols=180 Identities=15% Similarity=0.198 Sum_probs=145.2
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 474 NYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 474 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
+++|--..-..+.+.+.++|-...|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||..-|..+++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666667778889999999999999999875 4688888999999999999998888877 4788889999988
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH-cCCCCC-CHHHHHHHHHHHHHcCCHHH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIE-GIPFQP-SVMIWRALLGACIIHNNVEI 631 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~-~~~~~p-~~~~~~~l~~~~~~~g~~~~ 631 (805)
.....--+++|.++++....+ .-..+.....+.++++++.+-++ ++.++| -..+|-.++.+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888878888888887765432 22223333445788999988887 345555 35689888888889999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|.++|.....++|++...+.+++-+|.+.|+..+|.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999888887
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00037 Score=80.31 Aligned_cols=226 Identities=13% Similarity=0.168 Sum_probs=155.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh-----hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHH
Q 039715 409 HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE-----VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVAN 483 (805)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 483 (805)
...|-..|.-..+.++.++|.+++++.+.. +.+.. -.|.++++.-..-|.-+...++|+++.+.. ....+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 345666666666666677777666666542 21111 134444444444445555566666666543 2345788
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHH-HHHHHHc
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN--NLTFVG-VLSACSN 557 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~-ll~a~~~ 557 (805)
.|...|.+.++.++|.++|+.|.++ ....|...+..+.++.+.+.|..++.+.++. -|. .+-+.+ .+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 8899999999999999999999854 5678999999999999999999999998884 454 333322 2333457
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCCHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI---PFQPS--VMIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a 632 (805)
.|+.+.|+.+|+.....| +.....|+.++++=.+.|..+.++.+|+++ .+.|- -..|.-.+..=..||+-+..
T Consensus 1613 ~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 799999999999988653 235678999999999999999999999976 22232 23566666666677877666
Q ss_pred HHHHHHHhc
Q 039715 633 RLSAQHILD 641 (805)
Q Consensus 633 ~~~~~~~~~ 641 (805)
+.+=.++.|
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 665555554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00018 Score=82.82 Aligned_cols=192 Identities=14% Similarity=0.229 Sum_probs=86.3
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHHHc-CCC---CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-C-HhHHHHHHHH
Q 039715 446 TYSSVLRACASLAALEPGMQVHCLTVKA-NYD---MDVVVANALIDMYAKCGSITDARLVFDMMNDW-N-EVSWNAMISG 519 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~ 519 (805)
.|...+.-..+.+++++|+++.+++++. ++. --..+|.+++++-..-|.-+...++|+++.+- | ...|..|...
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3444444444555555555555544432 111 11234444444444444444455555554422 1 2344445555
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCC
Q 039715 520 YSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC---IEHYTSMVSLLGRAGH 596 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~ 596 (805)
|.+.+++++|.++|+.|.+. +.-....|...+..+.+...-+.|..++.++++. -|. .....-.+++-.+.|+
T Consensus 1540 y~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhcCC
Confidence 55555555555555555543 2223334444555555554445555555554422 222 2222233344445555
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 597 LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 597 ~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
.+.+..+|+.. .-.| -...|+.++..-.+||+.+.+..+|+++++
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55555555533 1111 233455555555555555555555555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00027 Score=80.86 Aligned_cols=232 Identities=9% Similarity=0.067 Sum_probs=129.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 039715 377 DVFVSNALMDVYAKCGRMENSVELFAESPK--R-NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRA 453 (805)
Q Consensus 377 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 453 (805)
+...+..|+..|...+++++|.++.+...+ | ....|..+...+.+.++..++..+ .+ +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhh
Confidence 445566666666666666666666654332 2 222333333355555554444333 22 122
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 530 (805)
.....++.....++..+.+. ..+...+..|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 22222232223333333332 22334566666667677777777777666653 2556666666666666 666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 039715 531 KVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGIPF 609 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~ 609 (805)
+++.+.... +.....+.++.+++..+.. ..|+ ...+--+..... ..+.+
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~------------~~~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVL------------GHREF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHH------------hhhcc
Confidence 666666552 3344456666666666652 2332 222111111111 11112
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 039715 610 QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYA 658 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 658 (805)
..-+.+|--+-.-|...+++++++.+++.+++.+|.|..+..-|+..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3334556666677888899999999999999999999888888888766
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0011 Score=68.35 Aligned_cols=220 Identities=10% Similarity=0.026 Sum_probs=120.0
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccC-CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 039715 418 GYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLA-ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSI 495 (805)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 495 (805)
.+...++.++|+.+..++++. .|+.. .+..--..+...+ .++++...+..+++.+ +.+..+|+...-++.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 334445555566665555542 33333 2222222333334 3455555555555544 22334455444444444542
Q ss_pred --HHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CC----HHH
Q 039715 496 --TDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNG---GL----LEQ 563 (805)
Q Consensus 496 --~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~~~ 563 (805)
+++..+++++. .+|..+|+-...++...|+++++++.++++++.+.. |...|+....++.+. |. .++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 45666666655 346677777777777778888888888888775422 333444444444333 22 245
Q ss_pred HHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhc----CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC---------
Q 039715 564 GEAYFKSMVANYGIEP-CIEHYTSMVSLLGRA----GHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHN--------- 627 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~----g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--------- 627 (805)
...+...++ .+.| +...|+.+..+|... ++..+|.+++.+. ...| ++.....|+..|....
T Consensus 202 el~y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 202 ELKYTIDAI---LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHHHH---HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 566665555 2345 456677676666662 3456677776654 2234 3455666666665421
Q ss_pred ---------CHHHHHHHHHHHhccCC
Q 039715 628 ---------NVEIGRLSAQHILDFEP 644 (805)
Q Consensus 628 ---------~~~~a~~~~~~~~~~~p 644 (805)
..++|..+++.+-+.+|
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhccccccccHHHHHHHHHHHHhhCc
Confidence 33667777777766666
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00093 Score=63.66 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 594 AGHLDKAAKLIEGIP--FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 594 ~g~~~eA~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+.+.+|.-+|++|. ..|+..+.+.+..++...|++++|+..++.++.-+|+++.++.++.-.--..|+-.++..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 345566666666662 457777778888888888888888888888888888888888888888888888877766
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00082 Score=69.72 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=77.0
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEI 631 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 631 (805)
....|..++|+..++.+... .| |+......++.+.+.++.++|.+.++++ ...|+ ...|-++..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34557777777777776633 34 4455555667777777777777777765 34555 5567777777777777777
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+..++..+.-+|+++..|..|+..|..+|+-.+|..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 7777777777777777777777777777777766655
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.7e-06 Score=53.97 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=32.8
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCc
Q 039715 123 ISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNP 157 (805)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 157 (805)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.7e-05 Score=69.01 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
....++..+...|++++|.+.++.+ ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3444444455555555555555443 1222 3345555555555555555555555555555555555555555555555
Q ss_pred CChHHHhh
Q 039715 661 RSWEKAAS 668 (805)
Q Consensus 661 g~~~~a~~ 668 (805)
|++++|.+
T Consensus 99 g~~~~A~~ 106 (135)
T TIGR02552 99 GEPESALK 106 (135)
T ss_pred CCHHHHHH
Confidence 55555544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00039 Score=72.03 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVL-SACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVS 589 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 589 (805)
.+-.....+...|++++|+..++.++. -.||...|..+. ..+...++.++|.+.++++. ...|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHH
Confidence 333444455667889999999999888 467776665544 45788999999999999988 45676 556677889
Q ss_pred HHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 590 LLGRAGHLDKAAKLIEGI--PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 590 ~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
+|.+.|+++||+..++.. ..+.|+..|..|..+|...|+..++..+ .+..|+-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 999999999999998865 2234678899999999999998888754 456778889999987
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
.
T Consensus 446 ~ 446 (484)
T COG4783 446 I 446 (484)
T ss_pred H
Confidence 7
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00011 Score=66.02 Aligned_cols=114 Identities=7% Similarity=0.042 Sum_probs=90.1
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-C
Q 039715 532 VFDLMQQRGWRPNN-LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-P 608 (805)
Q Consensus 532 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 608 (805)
.|++.++ ..|+. .....+...+...|++++|.+.|+.+... .| +...+..+...|.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666 45654 34556667788889999999999888743 34 6678888999999999999999988866 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 039715 609 FQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 609 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
..| +...|..+...+...|+.++|...+++++++.|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 344 567888888999999999999999999999999887643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00018 Score=75.40 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACII 625 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~ 625 (805)
..+++..+...+++++|..+|+++.+. .|+ ....|+..+...++-.+|.+++.+. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666777888999999999998854 355 4445778888888889999988765 2233 56677777777999
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 626 HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++++.|+.+++++.++.|++-.+|..|+.+|...|+|++|..
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999999999999999999999999999999988
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.8e-06 Score=52.81 Aligned_cols=35 Identities=34% Similarity=0.628 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN 545 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 545 (805)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00022 Score=74.80 Aligned_cols=126 Identities=10% Similarity=0.143 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCC
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGG 559 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g 559 (805)
...+|+..+...++++.|.++|+++.+.++..+..|+..+...++-.+|++++++.++. .| +...+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 44456677778899999999999999887777777888898899999999999999874 45 4444444555588899
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC
Q 039715 560 LLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQP 611 (805)
Q Consensus 560 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 611 (805)
+.+.|+.+.+++. ...|+ ..+|..|+..|.+.|++++|+-.++.+|+.+
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999988 45675 5699999999999999999999999998544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=71.19 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=78.1
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEI 631 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 631 (805)
..+.+++.+|+..|...+ .+.| |+..|..-..+|.+.|.++.|++=.+.. .+.|. ...|..|+.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345667777777777766 4566 3444555567777777777777666544 45565 4589999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 632 GRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
|++.|+++++++|++......|..+--+.+.-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999977777776655555444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0021 Score=60.85 Aligned_cols=167 Identities=13% Similarity=0.128 Sum_probs=118.3
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHH---HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDWNEVSWNAM---ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGL 560 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 560 (805)
.++-+...+|+.+.|...++.+..+-+-++... ..-+-..|++++|+++++..++.. +.|.+++---+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 333344456777777777766543211111111 112455788999999999998865 3466677776667777788
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC---CHHHHHHH
Q 039715 561 LEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHN---NVEIGRLS 635 (805)
Q Consensus 561 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~ 635 (805)
--+|++-+....+. +.-|.+.|.-+.++|...|.++.|.-.++++ -..| ++..+..+...+.-.| +.+.|.+.
T Consensus 136 ~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888888765 4668899999999999999999999999887 2345 5566777777755554 77889999
Q ss_pred HHHHhccCCCCcchHHHH
Q 039715 636 AQHILDFEPEDEATHVLL 653 (805)
Q Consensus 636 ~~~~~~~~p~~~~~~~~l 653 (805)
|.+++++.|.+...+..+
T Consensus 214 y~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHhChHhHHHHHHH
Confidence 999999999776555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.003 Score=72.61 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCC
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHG 524 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 524 (805)
..+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|++++.+... .|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~-----------~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY-----------RFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-----------HHHhhh
Confidence 355666667777777777777777777766 56777888888888888 88888888766432 366667
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH
Q 039715 525 LSAEVLKVFDLMQQRGWRPNNL 546 (805)
Q Consensus 525 ~~~~A~~l~~~m~~~g~~p~~~ 546 (805)
++.++.++|.++.+ ..|+.+
T Consensus 184 q~~~~~e~W~k~~~--~~~~d~ 203 (906)
T PRK14720 184 QYVGIEEIWSKLVH--YNSDDF 203 (906)
T ss_pred cchHHHHHHHHHHh--cCcccc
Confidence 78888888888877 345543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.6e-05 Score=51.36 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 039715 122 TISFVTTIQGYTVSSQFVEAVGLFSTLHREGHEL 155 (805)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 155 (805)
+.+||++|.+|++.|+++.|+++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999987
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00078 Score=61.07 Aligned_cols=124 Identities=16% Similarity=0.237 Sum_probs=84.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh--HHHHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN----LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI--EHYTS 586 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ 586 (805)
|..++..+ ..++...+...++++.+. .|+. .....+...+...|++++|...|+.+... ...|.. ...-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 34444444 477888888888888875 3433 23344556677888899999888888865 322322 23445
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039715 587 MVSLLGRAGHLDKAAKLIEGIPFQP-SVMIWRALLGACIIHNNVEIGRLSAQHIL 640 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 640 (805)
|..++...|++++|+..++..+..+ ....+..++..+...|+.++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6777888888888888888764222 34567777778888888888888888764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0023 Score=67.98 Aligned_cols=271 Identities=11% Similarity=0.065 Sum_probs=134.9
Q ss_pred CCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHH
Q 039715 154 ELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQM 233 (805)
Q Consensus 154 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m 233 (805)
.|.+..+.+-+-.+...|.+++|.++- ++.....-|..|..--...=+++-|++.+.++++-.+-+-+.-+++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~ 626 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEER 626 (1081)
T ss_pred ecccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555566666777776665442 11222334445554444555777777777777666676777777777
Q ss_pred HHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHH
Q 039715 234 RAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSF 313 (805)
Q Consensus 234 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 313 (805)
++.|-.|+.... ...++-.|++.+|.++|.+
T Consensus 627 k~rge~P~~iLl--------------------------------------A~~~Ay~gKF~EAAklFk~----------- 657 (1081)
T KOG1538|consen 627 KKRGETPNDLLL--------------------------------------ADVFAYQGKFHEAAKLFKR----------- 657 (1081)
T ss_pred HhcCCCchHHHH--------------------------------------HHHHHhhhhHHHHHHHHHH-----------
Confidence 777766664422 2233445666666666654
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 039715 314 MIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGR 393 (805)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 393 (805)
+|....|+++|..|+-- -...-+...|+.++-+.+.+.-.+.. .++.--.+...++...|+
T Consensus 658 -------~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe 718 (1081)
T KOG1538|consen 658 -------SGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGE 718 (1081)
T ss_pred -------cCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccc
Confidence 34445555555554321 11122333344333333332221110 011111233455556666
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHc
Q 039715 394 MENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKA 473 (805)
Q Consensus 394 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 473 (805)
.++|..+. ..+|-.+-++++-+++-. .+..+...+..-+.+...+..|-++|..+-..
T Consensus 719 ~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 719 HVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred hhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 66665543 223333444444333321 12233333444444555566666666555322
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHH
Q 039715 474 NYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEV 529 (805)
Q Consensus 474 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 529 (805)
.+++++....+++++|..+-++.++--...|-.-..-++...+++||
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHH
Confidence 35667777777888887777777653222233333333344444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.6e-05 Score=49.72 Aligned_cols=33 Identities=27% Similarity=0.570 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP 543 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 543 (805)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00049 Score=69.42 Aligned_cols=152 Identities=9% Similarity=-0.006 Sum_probs=112.6
Q ss_pred hHHHHHH-HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHcCCCHHHHHHHHHHHHHhcCCCCChHH----
Q 039715 511 VSWNAMI-SGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVL--SACSNGGLLEQGEAYFKSMVANYGIEPCIEH---- 583 (805)
Q Consensus 511 ~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---- 583 (805)
.+|-.+- .++...|++++|.+.--..++ +.++.. +..++ .++...++.+.|...|++.+ .+.|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATNA-EALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccchh-HHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 4444442 456778999999888777766 333222 22222 23456778899999988876 45665322
Q ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHcC-C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 584 ---------YTSMVSLLGRAGHLDKAAKLIEGI-P-----FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 584 ---------~~~li~~~~~~g~~~eA~~~~~~~-~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
+..=.....+.|++.+|.+.+.+. . .+|++..|.....+..+.|+.++|+.-.+.+++++|....
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 222234567899999999999865 3 3455666777777888999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHhh
Q 039715 649 THVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 649 ~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|..-++.+...++|++|++
T Consensus 323 all~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.6e-05 Score=72.41 Aligned_cols=111 Identities=13% Similarity=0.093 Sum_probs=92.6
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 588 VSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
+.-+.+.+++++|+..+.+. .+.| |++.|..=..+|.+.|.++.|++..+.++.++|....+|..||-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45577889999999999865 5566 677788888999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHHHHcC
Q 039715 666 AASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAG 713 (805)
Q Consensus 666 a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g 713 (805)
|.+ .|..+-...|..+.....|+.+..++++..
T Consensus 168 A~~---------------aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIE---------------AYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHH---------------HHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 988 233344567888877777877777766543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00058 Score=59.46 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLG 621 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~ 621 (805)
+..+...+...|++++|...|+.+...+.-.| ....+..++.++.+.|++++|.+.++++ ...|+ ..+|..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444455556666666666666654321111 1234455666666667777776666654 11222 456777778
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 622 ACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 622 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
++...|+.++|...++++++..|+++....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 888888888899888888888887765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=72.36 Aligned_cols=141 Identities=9% Similarity=0.020 Sum_probs=92.5
Q ss_pred CCCHhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHc----C----CCHHHHHHHHHHHH
Q 039715 507 DWNEVSWNAMISGYSMH-----GLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSN----G----GLLEQGEAYFKSMV 572 (805)
Q Consensus 507 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~----~----g~~~~a~~~~~~m~ 572 (805)
..|...|...+.+.... +...+|+.+|++..+ ..|+.. .+..+..++.. . +.+..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34677777777664432 236689999999998 678754 34433332211 1 12233333333332
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 573 ANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 573 ~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
.......+...|..+.-.....|++++|...++++ ...|+...|..++..|...|+.++|...+++++.++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 21112234567777777777788999999888876 466787788888888888999999999999999999977753
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0012 Score=59.94 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCCCH----HHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP-FQPSV----MIWRALL 620 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~----~~~~~l~ 620 (805)
.|..++.+. ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.+. ..||. ..+-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444454 47889999999999987643332 12344456688899999999999999773 22443 3566677
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+...|++++|+..++.. .-.|-.+..+..+|++|...|++++|..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 8889999999999999763 3344456778899999999999999975
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.014 Score=55.56 Aligned_cols=185 Identities=12% Similarity=0.125 Sum_probs=135.6
Q ss_pred cCChHHHHHHHHHHhh---cC-CCCChh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 039715 422 LGEVGKAMIMFSKMLE---EQ-VPATEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSIT 496 (805)
Q Consensus 422 ~g~~~~A~~~~~~m~~---~g-~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 496 (805)
..+.++.++++.++.. .| ..|+.. .|-.+.-+....|..+.|...++.+...- +.+..+...-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3457777777777754 33 455555 35556667777888888888888877664 434444433334466679999
Q ss_pred HHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 497 DARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 497 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
+|.++++.+.+. |.+++-.-+......|+..+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 999999998854 6667777777888889989999998888885 56688899999999999999999999999988
Q ss_pred hcCCCC-ChHHHHHHHHHHHhcC---CHHHHHHHHHcC-CCCC
Q 039715 574 NYGIEP-CIEHYTSMVSLLGRAG---HLDKAAKLIEGI-PFQP 611 (805)
Q Consensus 574 ~~~~~p-~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~p 611 (805)
-+.| ++..+..+.+.+.-.| +++-|.+.+.+. .+.|
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4667 4555667777665544 666788888765 3444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.012 Score=56.35 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=86.3
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cCCCH
Q 039715 486 IDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS----NGGLL 561 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~ 561 (805)
...|.+.|++++|++.......-+....+ ...+.+..+.+-|.+.+++|++- -+..|.+-|..++. ..+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 34566667777777666663322333222 23344556667777777777662 24455555555543 23456
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 039715 562 EQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI--PFQPSVMIWRALLGACIIHNNV-EIGRLSAQH 638 (805)
Q Consensus 562 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 638 (805)
.+|.-+|++|.++ ..|+..+.+-+.-+....|+++||..++++. ....++.+...++..-...|.- +--.+...+
T Consensus 190 qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 6777777777643 4566666666666666677777777777655 1123444555555554455543 333455566
Q ss_pred HhccCCCC
Q 039715 639 ILDFEPED 646 (805)
Q Consensus 639 ~~~~~p~~ 646 (805)
+....|+.
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 66556643
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.8e-05 Score=47.47 Aligned_cols=31 Identities=29% Similarity=0.599 Sum_probs=26.8
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 039715 123 ISFVTTIQGYTVSSQFVEAVGLFSTLHREGH 153 (805)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 153 (805)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.1e-05 Score=57.54 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-ChHHHhh
Q 039715 612 SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR-SWEKAAS 668 (805)
Q Consensus 612 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~ 668 (805)
++.+|..++..+...|++++|+..++++++++|+++..+..+|.+|...| ++++|.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHH
Confidence 45678888888888888888888888888888888888888888888888 6888765
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=4.7e-05 Score=48.73 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=31.5
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 635 SAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 635 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++++++++|+++.+|..||.+|...|++++|.+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999964
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00022 Score=75.27 Aligned_cols=106 Identities=10% Similarity=0.128 Sum_probs=74.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 628 (805)
...+...|++++|+..|+++++ +.| +...|..+..+|.+.|++++|+..++++ .+.| +...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3445667888888888888773 345 4566777777788888888888777765 3344 45567777777778888
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
+++|+..++++++++|+++.....+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888888888888887777766665554433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00092 Score=70.54 Aligned_cols=101 Identities=12% Similarity=0.092 Sum_probs=80.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHH
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLG 592 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 592 (805)
.....+...|++++|+++|+++++ ..|+ ...|..+..++...|++++|+..++.++. +.| +...|..++.+|.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHH
Confidence 345567788999999999999999 4564 55777888889999999999999999984 556 5678889999999
Q ss_pred hcCCHHHHHHHHHcC-CCCCCHHHHHHHH
Q 039715 593 RAGHLDKAAKLIEGI-PFQPSVMIWRALL 620 (805)
Q Consensus 593 ~~g~~~eA~~~~~~~-~~~p~~~~~~~l~ 620 (805)
..|++++|+..|++. .+.|+......++
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999876 3455544333333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0022 Score=60.15 Aligned_cols=130 Identities=10% Similarity=0.119 Sum_probs=89.5
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYT 585 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 585 (805)
....+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+++... +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 455677777788888888888888888877433332 24666777778888888888888887774 344 345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
.++.+|...|+...+..-++.. ...+++|.+.++++++++|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6677777777666554333221 123678899999999999977 6666666666665
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=9e-05 Score=46.59 Aligned_cols=31 Identities=48% Similarity=0.807 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGW 541 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 541 (805)
++||+|+.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=6e-05 Score=60.95 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSV-MIWRALLGACIIHNNVEIGRLSA 636 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 636 (805)
.|+++.|+.+++++.+.....|+...+-.+..+|.+.|++++|.+++++.+..|+. ...-.++.+|...|++++|+.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45666666666666644211112333444555566666666666666553322322 22333344455555555555555
Q ss_pred HH
Q 039715 637 QH 638 (805)
Q Consensus 637 ~~ 638 (805)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 44
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00041 Score=57.19 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSW 663 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 663 (805)
.++..+.+.|++++|...++++ ...| +...|..+...+...|++++|...++++++..|.+...+..++.++...|++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3444555555555555555543 1122 2244555555555556666666666666666665555555666666666665
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
++|.+
T Consensus 85 ~~a~~ 89 (100)
T cd00189 85 EEALE 89 (100)
T ss_pred HHHHH
Confidence 55543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0044 Score=57.82 Aligned_cols=123 Identities=11% Similarity=0.100 Sum_probs=76.5
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTS 586 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 586 (805)
...|..++..+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 45667777777888888888888888876432221 23677777778888888888888877763 3342 344555
Q ss_pred HHHHHHhcC-------CHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 039715 587 MVSLLGRAG-------HLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659 (805)
Q Consensus 587 li~~~~~~g-------~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 659 (805)
+..+|...| ++++|.. .+++|...++++++.+|++. ......+..
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~ 163 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGNY---IEAQNWLKI 163 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Confidence 555555333 2222221 23466777788888888553 344444555
Q ss_pred cCCh
Q 039715 660 ARSW 663 (805)
Q Consensus 660 ~g~~ 663 (805)
.|++
T Consensus 164 ~~~~ 167 (168)
T CHL00033 164 TGRF 167 (168)
T ss_pred hcCC
Confidence 5554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00034 Score=53.22 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
+...+.+.|++++|.+.|+++ ...| +...|..++.++...|++++|+..++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677778888888877765 3345 355788888888888888888888888888888764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00061 Score=63.66 Aligned_cols=88 Identities=10% Similarity=-0.114 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..+++++++.|+....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455667777788888888888888765 22222 3579999999999999999999999999999999999999999
Q ss_pred HHH-------hcCChHHHhh
Q 039715 656 IYA-------MARSWEKAAS 668 (805)
Q Consensus 656 ~~~-------~~g~~~~a~~ 668 (805)
+|. ..|++++|..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred HHHHhhHHHHHcccHHHHHH
Confidence 999 6667766544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.15 Score=52.59 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCch
Q 039715 382 NALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALE 461 (805)
Q Consensus 382 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 461 (805)
+..+.-+...|+...|.++-.+..-+|..-|-..+.+|+..+++++-..+-.. +-.++-|-.++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566778888888888888778888888889999999998877665332 223477888888888888888
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
+|..+...+ .+..-+.+|.++|++.+|.+.--
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 877766551 12566788888888888876643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.19 Score=50.94 Aligned_cols=233 Identities=16% Similarity=0.139 Sum_probs=147.9
Q ss_pred cCChHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 039715 422 LGEVGKAMIMFSKMLEEQVPATE--VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDAR 499 (805)
Q Consensus 422 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 499 (805)
.|+++.|.+-|+.|... |.. .-+..|.-...+.|..+.+.++-+..-..- +.-.-.+.+.++..+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 56667777777766541 111 112233333445666666666665554433 223456677788888888888888
Q ss_pred HHhhhcC-----CCCHh--HHHHHHHHHH---hCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHH
Q 039715 500 LVFDMMN-----DWNEV--SWNAMISGYS---MHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYF 568 (805)
Q Consensus 500 ~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 568 (805)
++.+.-. ++|+. .-..|+.+-+ -.-+...|...-.+..+ +.||-+ .-.....++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 8887654 33332 1222222211 12346666666666665 788866 3444556789999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHhcCCHHHH--HH--HHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 569 KSMVANYGIEPCIEHYTSMVSLLGRAGHLDKA--AK--LIEGIPFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 569 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA--~~--~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
+.+-+ .+|.+..+.. ..+.|.|+.... .. -++.| +|| ..+--+...+-...|++..|....+.+....
T Consensus 287 E~aWK---~ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWK---AEPHPDIALL--YVRARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHh---cCCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99874 4666655433 334566643222 11 12344 454 5566677777888999999999999999999
Q ss_pred CCCcchHHHHHHHHHhc-CChHHHhh
Q 039715 644 PEDEATHVLLSNIYAMA-RSWEKAAS 668 (805)
Q Consensus 644 p~~~~~~~~l~~~~~~~-g~~~~a~~ 668 (805)
| ..++|.+|+++-... |+-+++..
T Consensus 360 p-res~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 360 P-RESAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred c-hhhHHHHHHHHHhhccCchHHHHH
Confidence 9 567899999987666 88888776
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=57.37 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---cchHHHH
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED---EATHVLL 653 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 653 (805)
..+..++..+.+.|++++|.+.++++ ...|+ ...+..++.++...|++++|...+++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999877 22333 3467778889999999999999999999999875 5678899
Q ss_pred HHHHHhcCChHHHhh
Q 039715 654 SNIYAMARSWEKAAS 668 (805)
Q Consensus 654 ~~~~~~~g~~~~a~~ 668 (805)
+.+|.+.|++++|.+
T Consensus 83 ~~~~~~~~~~~~A~~ 97 (119)
T TIGR02795 83 GMSLQELGDKEKAKA 97 (119)
T ss_pred HHHHHHhCChHHHHH
Confidence 999999999999977
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.31 Score=53.11 Aligned_cols=344 Identities=13% Similarity=0.121 Sum_probs=152.6
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHH
Q 039715 189 DSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCA 268 (805)
Q Consensus 189 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 268 (805)
.|.+..|..|...-.+.-.++.|+..|-+. |+|.. +++..++...- +...-..=+. +--|.+++|.+++-.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc--~dY~G-ik~vkrl~~i~---s~~~q~aei~--~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC--GDYAG-IKLVKRLRTIH---SKEQQRAEIS--AFYGEFEEAEKLYLDA 760 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh--ccccc-hhHHHHhhhhh---hHHHHhHhHh--hhhcchhHhhhhhhcc
Confidence 467777877777666666777777776533 22211 11111111100 0000000001 1124555555555443
Q ss_pred HHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC-----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 039715 269 LKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK-----DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQ 343 (805)
Q Consensus 269 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (805)
-+.. ..|.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-...
T Consensus 761 drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------ 825 (1189)
T KOG2041|consen 761 DRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ 825 (1189)
T ss_pred chhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------
Confidence 3322 2344555555555555555432211 1123555555555555555555555443210
Q ss_pred hHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 039715 344 FTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLG 423 (805)
Q Consensus 344 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 423 (805)
...+.++.+..++++-+.+... ++.+....-.+.+++.+.|.-++|.+.|-+-..|. +-+..|...+
T Consensus 826 ---e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 826 ---ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELN 892 (1189)
T ss_pred ---HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHH
Confidence 1123333333333332222221 24444555556666666666666666654443332 2234455555
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 424 EVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 424 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
++.+|.++-+...- |...|+ +.-+ +-+++ .+.+ ..--|.++.+.|+.-+|.+++.
T Consensus 893 QW~~avelaq~~~l----~qv~tl---iak~--------aaqll---~~~~-------~~eaIe~~Rka~~~~daarll~ 947 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQL----PQVQTL---IAKQ--------AAQLL---ADAN-------HMEAIEKDRKAGRHLDAARLLS 947 (1189)
T ss_pred HHHHHHHHHHhccc----hhHHHH---HHHH--------HHHHH---hhcc-------hHHHHHHhhhcccchhHHHHHH
Confidence 66666665554421 222221 1100 11111 1100 0113566777888777777777
Q ss_pred hcCCCCH---hHHHHHHHHHH----hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Q 039715 504 MMNDWNE---VSWNAMISGYS----MHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYG 576 (805)
Q Consensus 504 ~~~~~~~---~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 576 (805)
+|.++.. +.|..+-..|. -..++.++++-.++....|...|... +...|...++-++.+..-. |
T Consensus 948 qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g 1018 (1189)
T KOG2041|consen 948 QMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G 1018 (1189)
T ss_pred HHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h
Confidence 7764311 11111111111 11233445555555555554333221 1233344444444332221 1
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 577 IEPCIEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 577 ~~p~~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
....|+-.|..--...|+.+.|+..-
T Consensus 1019 --AEAyHFmilAQrql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 1019 --AEAYHFMILAQRQLFEGRVKDALQTA 1044 (1189)
T ss_pred --HHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 23456666666677788888888753
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.42 Score=53.91 Aligned_cols=216 Identities=12% Similarity=0.059 Sum_probs=119.9
Q ss_pred hCCCchHHHHHhccCCC--CCcchHHHHHHHH--HcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhh
Q 039715 103 KLNRLPDATKLFDEMPE--RNTISFVTTIQGY--TVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPC 178 (805)
Q Consensus 103 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 178 (805)
..+++..|....+++.. ||. .|...+.++ .+.|+.++|..+++.....+.. |..|..++-..|.+.+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 45677777777777654 333 356666665 5678888888888777654433 66688888888888888888888
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCC-
Q 039715 179 VFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDT- 257 (805)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~- 257 (805)
++++..... |+......+-.+|.+.+++..-++ .|++++. ...-+.+.|.++++.......
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQk-----------aa~~LyK-----~~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQK-----------AALQLYK-----NFPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH-----hCCcccchHHHHHHHHHHhccC
Confidence 888877654 456666667777777666553222 2444443 233345667777666543221
Q ss_pred ---------HHHHHHHHHHHHHhC-CCCcHhHHHHHHHHHHcCCChHHHHHHHhh-C----CCCCcccHHHHHHHHHhCC
Q 039715 258 ---------IRVAKSAHGCALKTC-YEMDLYVAVALLDLYTKSGEISNARRIFEE-M----PKKDVIPWSFMIARYAQTD 322 (805)
Q Consensus 258 ---------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-~----~~~~~~~~~~li~~~~~~g 322 (805)
+..|....+.+++.+ ......-.-.-.......|+.++|..++.. . ..-+...-|--+.-+...+
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~ 240 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN 240 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 223444444444433 111111111111223345556666665521 1 1112222334445555556
Q ss_pred ChhHHHHHHHHHHHCC
Q 039715 323 LSIDAVELFCRMRQAF 338 (805)
Q Consensus 323 ~~~~A~~~~~~m~~~g 338 (805)
++.+..++-.++...|
T Consensus 241 ~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 241 RWQELFELSSRLLEKG 256 (932)
T ss_pred ChHHHHHHHHHHHHhC
Confidence 6666666555555543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.26 Score=51.20 Aligned_cols=462 Identities=12% Similarity=0.142 Sum_probs=226.9
Q ss_pred hcCCChHHHHHHHHHHHHcCCCC-C----cchHHHHHHHHHhCCCchHHHHHhccCCCC-CcchHHHHHHHH--HcCCCh
Q 039715 67 IQNDDLQTAMTIHCQVLKKGNCL-D----LFATNVLLNVYVKLNRLPDATKLFDEMPER-NTISFVTTIQGY--TVSSQF 138 (805)
Q Consensus 67 ~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~~ 138 (805)
-+++++.++..+|.++.+..-.. . -...+.++++|.-. +++.-........+. ....|-.+..+. -+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 45789999999999988764321 1 24567888888643 444444444333321 133466666654 467889
Q ss_pred hHHHHHHHHHHhC--CCCC-----------Ccc-hHHHHHHHHhccCCccchhhHHHHHHHhCCC----CchhhHHHHHH
Q 039715 139 VEAVGLFSTLHRE--GHEL-----------NPF-AFTAFLKVLVSMGWAELCPCVFACVYKLGHD----SNAFVGTALID 200 (805)
Q Consensus 139 ~~A~~~~~~m~~~--g~~p-----------~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~ 200 (805)
.+|++.+..-.+. +-+| +.+ -=+.....+...|.+.+|+.++.+++..-++ -+..+||.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9999998887654 3332 222 2234566778999999999999888876544 78899999888
Q ss_pred HHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCC------CCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q 039715 201 AFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVG------FKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYE 274 (805)
Q Consensus 201 ~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 274 (805)
+|++.=-++--......+--..|+.++-...+|.... +.|-..-+..++....-.
T Consensus 176 mlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~------------------- 236 (549)
T PF07079_consen 176 MLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIV------------------- 236 (549)
T ss_pred HHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhC-------------------
Confidence 8887532222111111111222334444444443221 122222222222221110
Q ss_pred CcHhHHHHHHHHHHcCCChHHHHHHHhhCC-CCCcccHHHHHHHHHhC--CChhHHHHHHHHHHHCCCCC----ChhHHH
Q 039715 275 MDLYVAVALLDLYTKSGEISNARRIFEEMP-KKDVIPWSFMIARYAQT--DLSIDAVELFCRMRQAFVAP----NQFTFV 347 (805)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p----~~~t~~ 347 (805)
|.. +.--+-.+.+.|+.-- .|+ |+.+|..+... .+.+++..+-+.+....+.+ =..+|.
T Consensus 237 p~e-----------~l~~~mq~l~~We~~yv~p~---~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~ 302 (549)
T PF07079_consen 237 PKE-----------RLPPLMQILENWENFYVHPN---YDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFG 302 (549)
T ss_pred CHh-----------hccHHHHHHHHHHhhccCCc---hhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 000 0000112222222110 111 22222222211 14444444444433221110 123566
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHH
Q 039715 348 SVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGK 427 (805)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 427 (805)
.++..+.+.++...|.+.+..+.-. .|+..+..-|+ -..+.+..|...|-..++.+ ..
T Consensus 303 ~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kll----------ls~~~lq~Iv~~DD~~~Tkl----------r~ 360 (549)
T PF07079_consen 303 NLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLL----------LSPKVLQDIVCEDDESYTKL----------RD 360 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhh----------cCHHHHHHHHhcchHHHHHH----------HH
Confidence 6777777777777777776666543 33332222221 11222223322222222221 11
Q ss_pred HHHHHHHHhhcCCCCChhh-HHHHHHH---HhccC-CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHh
Q 039715 428 AMIMFSKMLEEQVPATEVT-YSSVLRA---CASLA-ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVF 502 (805)
Q Consensus 428 A~~~~~~m~~~g~~p~~~t-~~~ll~a---~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 502 (805)
=+.++.+.....+ |..- ...++.+ +-+.| .-+++..++..+.+-. +-|...-|... .+.
T Consensus 361 yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~-~fv------------ 424 (549)
T PF07079_consen 361 YLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVF-LFV------------ 424 (549)
T ss_pred HHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHH-HHH------------
Confidence 2223333322211 1110 0111111 11111 1333333333333321 11111111111 110
Q ss_pred hhcCCCCHhHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHH--HHcCCCHHHHHHHHHHHHH
Q 039715 503 DMMNDWNEVSWNAMISGYSM---HGLSAEVLKVFDLMQQRGWRPNN----LTFVGVLSA--CSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 503 ~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a--~~~~g~~~~a~~~~~~m~~ 573 (805)
=.+|.+ .....+-+.+-+-..+.|+.|-. ..-+.+.+| +...|++.++.-+-..+.
T Consensus 425 --------------Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~- 489 (549)
T PF07079_consen 425 --------------KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT- 489 (549)
T ss_pred --------------HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-
Confidence 011211 12233444555555677887733 334445555 456799999987765555
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHH
Q 039715 574 NYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRAL 619 (805)
Q Consensus 574 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l 619 (805)
.+.|++.+|.-++-.+....+++||.+++..+| |+..+|++-
T Consensus 490 --~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 490 --KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred --HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 589999999999999999999999999999998 677777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=52.72 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
.+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3344444444455555555554432 1112 234566666666666777777777777766665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.25 Score=50.51 Aligned_cols=100 Identities=8% Similarity=0.101 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----HH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCCC--hHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-----NL-TFVGVLSACSNGGLLEQGEAYFKSMVANY-GIEPC--IEH 583 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~ 583 (805)
+..++..+.+.|++++|+++|++....-...+ .. .|...+-.+...|+...|...++...... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34466777888888888888888776433221 11 23333335566788888888888776221 12222 234
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHcCCCCCCH
Q 039715 584 YTSMVSLLGR--AGHLDKAAKLIEGIPFQPSV 613 (805)
Q Consensus 584 ~~~li~~~~~--~g~~~eA~~~~~~~~~~p~~ 613 (805)
...|++++-. ...+++|..-|+++. +.|.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~ 268 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDN 268 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS----H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC-ccHH
Confidence 5566666653 456777777777775 3444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00041 Score=52.76 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...+...|++++|+..++++++..|+++.++..+|.++...|++++|..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 52 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALA 52 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 55678899999999999999999999999999999999999999999976
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00078 Score=54.38 Aligned_cols=80 Identities=15% Similarity=0.241 Sum_probs=48.0
Q ss_pred CCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 039715 523 HGLSAEVLKVFDLMQQRGWR-PNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 600 (805)
+|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|+ ....-.++..|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 56777777777777774321 1333444466677777777777777766 2 22232 23333446777777777777
Q ss_pred HHHHHc
Q 039715 601 AKLIEG 606 (805)
Q Consensus 601 ~~~~~~ 606 (805)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0017 Score=60.85 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
...+..++..|.+.|++++|...+++. +..++ ...|..++..+...|++++|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666677777777777777777655 21122 4578889999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHh
Q 039715 656 IYAMARSWEKAA 667 (805)
Q Consensus 656 ~~~~~g~~~~a~ 667 (805)
+|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 999999876654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.012 Score=52.54 Aligned_cols=90 Identities=8% Similarity=-0.000 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMV 588 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 588 (805)
...-.+..-+.+.|++++|..+|+-+.. +.|... -|..|..+|...|++++|+..|.... .+.| ++..+-.+.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHH
Confidence 3333444445555666666666665555 444333 33444444555566666666665554 2333 344555555
Q ss_pred HHHHhcCCHHHHHHHHH
Q 039715 589 SLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~ 605 (805)
..|.+.|+.++|++-|+
T Consensus 111 ~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 111 ECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 55555555555555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00029 Score=54.21 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=26.8
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..|++++|+..++++++.+|+++.+...++.+|.+.|++++|.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 46 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEE 46 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666666666666666666666666666666666655
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.021 Score=51.58 Aligned_cols=123 Identities=10% Similarity=0.112 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHcC----C--CCCCH
Q 039715 541 WRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI-EPCIEHYTSMVSLLGRAGHLDKAAKLIEGI----P--FQPSV 613 (805)
Q Consensus 541 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~--~~p~~ 613 (805)
.-|....-..|..+....|+..+|...|++... |+ .-|....-.+..+....++..+|...++++ | -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345555555566666777777777777766653 33 335555556666666667777777666654 1 12333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.-.+...+...|+.+.|+..++.++..-| ++..-...+..+.++|+.++|..
T Consensus 163 --~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 --HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred --hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 33456678888999999999999999888 56666778888999999888865
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0096 Score=60.55 Aligned_cols=135 Identities=14% Similarity=0.177 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSA-CSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
.+|-.++....+.+..+.|..+|.+.++.+ ......|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 357777777777777888888888887532 2234445544444 334567777999999999765 446778889999
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 590 LLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 590 ~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.+.+.|+.+.|..+|++. ..-|. ..+|...+.-=..+|+.+....+.+++.+.-|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999966 22233 358999999999999999999999999999987543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=61.47 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=57.2
Q ss_pred chhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh---ccccHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039715 175 LCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL---FNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKA 251 (805)
Q Consensus 175 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 251 (805)
-....+..|.+.|++.|..+|+.|++.+=+ |.+- -+.+|+.+ ...+-+-|++++++|...|+.||..|+..++..
T Consensus 70 FI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~i 147 (228)
T PF06239_consen 70 FIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNI 147 (228)
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 333344445555555556666666655554 3222 33444444 223446789999999999999999999999999
Q ss_pred hhCCCCH-HHHHHHHHHHHH
Q 039715 252 CLGLDTI-RVAKSAHGCALK 270 (805)
Q Consensus 252 ~~~~~~~-~~a~~~~~~~~~ 270 (805)
+.+.+.. ...+++.=.|.+
T Consensus 148 FG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 148 FGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred hccccHHHHHHHHHHHHHHH
Confidence 8876643 334444434433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.56 Score=51.91 Aligned_cols=339 Identities=12% Similarity=0.037 Sum_probs=158.7
Q ss_pred CCCCCChhhHHH-----HHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCC---ChHHHHHHHhhCCC--
Q 039715 236 VGFKPNNFTFAF-----VLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSG---EISNARRIFEEMPK-- 305 (805)
Q Consensus 236 ~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~~~~-- 305 (805)
-|+..+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+-+..+=+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 355555554443 3555556667777777766553222122 466666666666653 23334444444444
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCC----CCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHH
Q 039715 306 KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFV----APNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVS 381 (805)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 381 (805)
..-++|..+.+--.+.|+.+-|..+++.=...+- -.+-.-+...+.-+...|+.+...+++-.+...- +...+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH
Confidence 4566788888888888888888877653211110 0111223344444555566555555544443321 00000
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHHcCChHHHHHHHH--HHhh-cCCCCChhhHHHHHHHHhcc
Q 039715 382 NALMDVYAKCGRMENSVELFAESPK-RNHVTWNTMIVGYVQLGEVGKAMIMFS--KMLE-EQVPATEVTYSSVLRACASL 457 (805)
Q Consensus 382 ~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~-~g~~p~~~t~~~ll~a~~~~ 457 (805)
.....+...|..+|....+ .|..+ +-..| ++++-.+++.-|. .... ..+.+-........++|++.
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~s 651 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKS 651 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhh
Confidence 1111122333344433211 11111 11112 1222222222111 1000 00112222233334444444
Q ss_pred CCchhHHHHHH----------HHH-HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCCh
Q 039715 458 AALEPGMQVHC----------LTV-KANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLS 526 (805)
Q Consensus 458 ~~~~~a~~~~~----------~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 526 (805)
....-..+..+ .+. +.|.....-+.+--+.-+...|+..+|.++-.+..-+|-..|---+.+++..+++
T Consensus 652 k~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kw 731 (829)
T KOG2280|consen 652 KEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKW 731 (829)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhH
Confidence 33221111111 111 1121111122222333344557777777777777766777777677777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 527 AEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 527 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
++-+++-+.+. .+.-|.-...+|.+.|+.++|..++-+.. +. . -.+.+|.+.|++.||.++-
T Consensus 732 eeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 732 EELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch---H----HHHHHHHHhccHHHHHHHH
Confidence 66555433322 13455556667777777777777654332 11 1 4566777777777766653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0031 Score=56.39 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGIP-F-QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSW 663 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 663 (805)
....-+...|++++|..+|.-+- . .-|..-|..|...|...+++++|+..|-.+..+.++||.++...|..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34455667899999999998552 1 235668999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
+.|..
T Consensus 122 ~~A~~ 126 (165)
T PRK15331 122 AKARQ 126 (165)
T ss_pred HHHHH
Confidence 99988
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00052 Score=52.79 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=31.1
Q ss_pred hcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 593 RAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 593 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
..|++++|+++|+++ ...| +..++..++.+|...|++++|...+++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 345555555555543 1122 3445555555555555555555555555555555544444443
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00091 Score=51.56 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHN-NVEIGRLSAQHILDFEP 644 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 644 (805)
++..|..++..+.+.|++++|+..|++. ...| ++..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567778888888888888888888865 3445 4568999999999999 79999999999999988
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=65.36 Aligned_cols=251 Identities=13% Similarity=0.058 Sum_probs=142.2
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCC---CChhhHHHHHHHHhccCCchhHHHHHHHHH--Hc--CC-CCcHhHHHHHHHHH
Q 039715 418 GYVQLGEVGKAMIMFSKMLEEQVP---ATEVTYSSVLRACASLAALEPGMQVHCLTV--KA--NY-DMDVVVANALIDMY 489 (805)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~--~~--~~-~~~~~~~~~li~~y 489 (805)
-+++.|+....+.+|+..++.|.. .-...|..|.++|.-++++++|.++|..=+ .. |- .-.......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 456667777777777777665521 112245556666666777777777654211 11 10 01122233344444
Q ss_pred HhcCCHHHHHHHhhhcCC-------C--CHhHHHHHHHHHHhCCC--------------------hHHHHHHHHHHHH--
Q 039715 490 AKCGSITDARLVFDMMND-------W--NEVSWNAMISGYSMHGL--------------------SAEVLKVFDLMQQ-- 538 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~-- 538 (805)
--.|.+++|.-.-.+-.. + ....+-.+...|...|+ .+.|.++|.+=++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666544322210 0 22244445555554442 2234444443222
Q ss_pred --cCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHH---HHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----
Q 039715 539 --RGWR-PNNLTFVGVLSACSNGGLLEQGEAYFKSM---VANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI---- 607 (805)
Q Consensus 539 --~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~---- 607 (805)
.|-. .-...|..|...|.-.|++++|+..++.= .+.||-.. ....++.|...+.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1100 01124556666666678888888776542 23344333 2356778888888889999988887743
Q ss_pred -CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCChHHHhh
Q 039715 608 -PFQ---PSVMIWRALLGACIIHNNVEIGRLSAQHILDFE------PEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 608 -~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+. -.+-+..+|.++|....+++.|+....+-+.+. -....++-.|++.|...|..+.|..
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 111 123456788888888888888988877665532 2345677888999999998888876
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.41 Score=49.33 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 039715 483 NALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 562 (805)
+..+.-+...|+...|.++-.+..-+|..-|-..+.+|+..+++++-.++... +-.++.|-.++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556778899999998888888999999999999999999877665332 224477888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 039715 563 QGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGAC 623 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~ 623 (805)
+|..+...+. +..-+.+|.++|.+.+|.+.--+.. |...+..+...|
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 9988875521 2456788999999999987755442 444444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.015 Score=49.99 Aligned_cols=92 Identities=11% Similarity=0.100 Sum_probs=69.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHH
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQQRGWRPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLL 591 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 591 (805)
.+..++-..|+.++|+.+|++..+.|+... ...+..+.+++...|++++|..+++.....+.-.+ +......+.-.+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 356678889999999999999999887665 33677888889999999999999999886542211 222333345577
Q ss_pred HhcCCHHHHHHHHHc
Q 039715 592 GRAGHLDKAAKLIEG 606 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~ 606 (805)
...|+.+||++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 889999999988754
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.063 Score=57.63 Aligned_cols=211 Identities=14% Similarity=0.139 Sum_probs=118.9
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh
Q 039715 366 HSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV 445 (805)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 445 (805)
++.+.+.|-.|+... +.+.++-.|++.+|.++|.+ +|.-..|+++|..|+--
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-------
Confidence 455666676666543 44556778888888888754 45566677666666421
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCC
Q 039715 446 TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGL 525 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 525 (805)
-..+-+...|..++-+.+...-.+. ..+..--.+-.+|+...|+.++|..+. ..+|-
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW 731 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGW 731 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccH
Confidence 1122233333333333322211110 011111123345566667777776553 34555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 039715 526 SAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 526 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 605 (805)
.+-++++-+++-. .+..+...+...+-+...+..|-++|.+|-. ...++++....|+++||..+-+
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhh
Confidence 5555555444432 2334454554455566667778888877652 2457788888888888888888
Q ss_pred cCC-CCCCHHH-HHHH----------HHHHHHcCCHHHHHHHHHHHhc
Q 039715 606 GIP-FQPSVMI-WRAL----------LGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 606 ~~~-~~p~~~~-~~~l----------~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
+.| +.||+.. |... -.+|.+.|+..+|..+++++..
T Consensus 798 ~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 798 KHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 876 4455421 2222 2456777888888888887754
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.044 Score=55.98 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=68.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHH
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNG-GLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSL 590 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~ 590 (805)
.+..|...|++..|-..+.++- ..|... |++++|.++|++..+-|..... ...+..++.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 3445555666555555444443 345555 7788888877777655433322 2455667788
Q ss_pred HHhcCCHHHHHHHHHcCC---C-----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 591 LGRAGHLDKAAKLIEGIP---F-----QPSVM-IWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~~---~-----~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
+.+.|++++|.++|++.. . +.++. .+-..+-.+...||...|.+.+++..+.+|.-
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 888999999998888651 1 11121 12222334556789999999999999988844
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.071 Score=55.28 Aligned_cols=163 Identities=13% Similarity=0.075 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCC---C----HhHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDW---N----EVSWNAMISGYSM---HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
.|+-.|....+++...++.+.+... + ...-...+-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344566777777777777776643 1 1122223445555 6888888888888666555677777776665
Q ss_pred HHH---------cCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHH----HHHHH---H----cC---CCC
Q 039715 554 ACS---------NGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDK----AAKLI---E----GI---PFQ 610 (805)
Q Consensus 554 a~~---------~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e----A~~~~---~----~~---~~~ 610 (805)
.|- ....+++|...|.+.- .++|+..+--.++.++..+|...+ ..++. . +- .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 542 1234677777776543 566766554455555555554322 22222 0 00 123
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 611 PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 611 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
.|-..+.+++.++...|+.+.|.+++++++++.|+.-..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 455667899999999999999999999999998866443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=45.66 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
.+|..+..+|...|+.++|+++++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 368889999999999999999999999999999999888874
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.18 Score=51.61 Aligned_cols=146 Identities=12% Similarity=0.092 Sum_probs=65.7
Q ss_pred HHhCCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcC
Q 039715 520 YSMHGLSAEVLKVFDLMQQR---GWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAG 595 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 595 (805)
..++|++.+|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+... .++|. +..|---...+.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555541 112223334444444555555555555544443 23332 111222222333344
Q ss_pred CHHHHHHHHHcC-CCCCCH---HH---------------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc--------
Q 039715 596 HLDKAAKLIEGI-PFQPSV---MI---------------WRALLGACIIHNNVEIGRLSAQHILDFEPEDEA-------- 648 (805)
Q Consensus 596 ~~~eA~~~~~~~-~~~p~~---~~---------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------- 648 (805)
.+++|.+-+++. ....+. .+ |-.+++.-+...+.+.....-+.++...|+-..
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~ 415 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEA 415 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHH
Confidence 555555555432 111111 11 222222222223333333333445555664322
Q ss_pred hHHHHHHHHHhcCChHHHhh
Q 039715 649 THVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 649 ~~~~l~~~~~~~g~~~~a~~ 668 (805)
-+...|+.|...++.+++.+
T Consensus 416 kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 416 KFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHHHHHHHHhcCHHHHhh
Confidence 24467888888888888776
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.062 Score=51.35 Aligned_cols=167 Identities=11% Similarity=0.028 Sum_probs=117.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC--CChh--------hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHH
Q 039715 381 SNALMDVYAKCGRMENSVELFAESPK--RNHV--------TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSV 450 (805)
Q Consensus 381 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 450 (805)
++.|...|.-..-+++-...|+.-.. ..+. .-+.++..+.-.|.+.-.+.++++.++...+.+....+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45566666555555555555544322 2222 3355666667778888888899999887766777778888
Q ss_pred HHHHhccCCchhHHHHHHHHHHcC-----CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHh
Q 039715 451 LRACASLAALEPGMQVHCLTVKAN-----YDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSM 522 (805)
Q Consensus 451 l~a~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 522 (805)
.+.-.+.|+.+.+...++.+.+.. +..+..+.......|.-++++..|...|++++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888889999999999999777643 333444444555567778888899999988874 367777777777777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHH
Q 039715 523 HGLSAEVLKVFDLMQQRGWRPNNLTFV 549 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~~p~~~t~~ 549 (805)
.|+..+|++..+.|.+ ..|...+-.
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhh
Confidence 8999999999999998 456544433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.63 Score=47.42 Aligned_cols=116 Identities=14% Similarity=0.051 Sum_probs=50.7
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHH----HHHHhhCCCCCcccHHHHHHHHHhCCChh
Q 039715 250 KACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNA----RRIFEEMPKKDVIPWSFMIARYAQTDLSI 325 (805)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A----~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 325 (805)
+++.+.|++.++-.+++.+-+..++|+.. ++..+.+.|+.... .+-+..|...+..+--.+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 44455555555555555555554444321 12223344432211 11233444444445445555555555554
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHH-hccCCchHHHHHHHHHHH
Q 039715 326 DAVELFCRMRQAFVAPNQFTFVSVLQAC-ATMEGLDLGNQIHSLVVR 371 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~ 371 (805)
.|..--+...+ ..|....|..+...- +..||-.++.+.+.+.++
T Consensus 347 ~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 347 AARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 44433333322 234444444444432 223455555555444444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.022 Score=56.21 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=73.9
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHc-C--CHHHHHHHHHHHhccCCCCcchHH
Q 039715 578 EP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACIIH-N--NVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 578 ~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
.| |.+.|.-|...|.+.|+.+.|..-|.+. .+ .+|+..+..+..++..+ | ...++..+++++++++|+|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 6788999999999999999999888765 22 24566777777775443 2 567888999999999999999999
Q ss_pred HHHHHHHhcCChHHHhh
Q 039715 652 LLSNIYAMARSWEKAAS 668 (805)
Q Consensus 652 ~l~~~~~~~g~~~~a~~ 668 (805)
.|+..+..+|++.+|..
T Consensus 232 lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 232 LLAFAAFEQGDYAEAAA 248 (287)
T ss_pred HHHHHHHHcccHHHHHH
Confidence 99999999999999987
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.002 Score=50.24 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=23.9
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 622 ACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 622 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.|...+++++|+++++++++++|+++..+...|.+|...|++++|.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 50 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALE 50 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHH
Confidence 34444555555555555555555555555555555555555555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.08 Score=52.46 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCh---h---hHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 039715 386 DVYAKCGRMENSVELFAESPKRNH---V---TWNTMIVGYVQLGEVGKAMIMFSKMLEEQ 439 (805)
Q Consensus 386 ~~y~~~g~~~~A~~~f~~~~~~~~---~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g 439 (805)
..+.+.|++++|.+.|+.+....+ . ..-.++.+|.+.+++++|...|++..+..
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 334556777777777766543211 1 12334556677777777777777776643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.026 Score=57.45 Aligned_cols=133 Identities=16% Similarity=0.139 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHH-HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRA-CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMY 489 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 489 (805)
.|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+..++. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46666666666666777777777766432 1122222222222 22234555577777766664 355667777777777
Q ss_pred HhcCCHHHHHHHhhhcCCC------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 039715 490 AKCGSITDARLVFDMMNDW------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT 547 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 547 (805)
.+.|+.+.|+.+|++.... -...|...+.--.+.|+.+.+.++.+++.+ .-|+...
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~ 142 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNS 142 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-H
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhH
Confidence 7888888888888777632 234677777777777777777777777776 3444333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0088 Score=51.39 Aligned_cols=81 Identities=12% Similarity=-0.013 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHHcCC---CCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 039715 588 VSLLGRAGHLDKAAKLIEGIP---FQP-S-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPE---DEATHVLLSNIYAM 659 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~~---~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 659 (805)
..++...|+.++|+.++++.- ... + ...+-.+.++++..|++++|+.++++.++-.|+ +....+.++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 344555666666666665431 111 1 234556667777777777777777777777676 55566667777777
Q ss_pred cCChHHHhh
Q 039715 660 ARSWEKAAS 668 (805)
Q Consensus 660 ~g~~~~a~~ 668 (805)
.|++++|.+
T Consensus 88 ~gr~~eAl~ 96 (120)
T PF12688_consen 88 LGRPKEALE 96 (120)
T ss_pred CCCHHHHHH
Confidence 777777755
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.011 Score=48.70 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHhh
Q 039715 223 FEEALNFFSQMRAVGFKPNNFTFAFVLKACL 253 (805)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 253 (805)
.-+.+.+++.|...+++|+..||+.++..+.
T Consensus 85 l~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 85 LTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 3467888899999999999999999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0037 Score=48.74 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=53.6
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 588 VSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
-.+|.+.+++++|.+.++++ ...| ++..|...+..+...|++++|...++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35678888999999988876 3445 456788888899999999999999999999999887765544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0036 Score=65.37 Aligned_cols=56 Identities=14% Similarity=-0.019 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch---HHHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT---HVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~ 668 (805)
...|+.++.+|...|++++|+..++++++++|++..+ |.+++.+|..+|+.++|..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455666666666666666666666666666655533 5566666666666666555
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.048 Score=60.29 Aligned_cols=60 Identities=8% Similarity=0.045 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMV 572 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 572 (805)
..|.++.......|++++|...++++.+ +.|+...|..+...+...|+.++|...+++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444555555555555555 33444445555555555555555555554444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.98 Score=46.95 Aligned_cols=93 Identities=8% Similarity=0.163 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 039715 77 TIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTI---SFVTTIQGYTVSSQFVEAVGLFSTLHREGH 153 (805)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 153 (805)
++-+++.+. +.++..|-.||.-|...|..++-++++++|..|-+. .|..-|++-....+++....+|.+-....+
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 444444332 357788999999999999999999999999987554 799999998888999999999999887554
Q ss_pred CCCcchHHHHHHHHhccCCc
Q 039715 154 ELNPFAFTAFLKVLVSMGWA 173 (805)
Q Consensus 154 ~p~~~t~~~ll~~~~~~~~~ 173 (805)
. ...|..-|.-.-+..+.
T Consensus 108 ~--ldLW~lYl~YIRr~n~~ 125 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNL 125 (660)
T ss_pred c--HhHHHHHHHHHHhhCcc
Confidence 4 44555555544444433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.011 Score=59.79 Aligned_cols=255 Identities=11% Similarity=0.043 Sum_probs=148.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh----HHHHHHHHHhccCCchHHHHHHHHHHH--h--CCC-ccHHHHHHHHHH
Q 039715 317 RYAQTDLSIDAVELFCRMRQAFVAPNQF----TFVSVLQACATMEGLDLGNQIHSLVVR--V--GLL-SDVFVSNALMDV 387 (805)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~~-~~~~~~~~Li~~ 387 (805)
-+++.|+....+.+|+..++.|.. |.. .|..+..+|.-.+++++|.++|..=+. . |-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 356667777777777777666532 332 344455556666677777776543221 1 100 011122234444
Q ss_pred HHhcCChHHHHHHHhc-------CCCC--ChhhHHHHHHHHHHcCC--------------------hHHHHHHHHHHhh-
Q 039715 388 YAKCGRMENSVELFAE-------SPKR--NHVTWNTMIVGYVQLGE--------------------VGKAMIMFSKMLE- 437 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~-------~~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 437 (805)
+--.|.+++|.-.-.+ +-++ ....+..+...|...|+ ++.|.+.|.+=++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665543221 1111 12234445555555442 2334444433221
Q ss_pred ---cCCC-CChhhHHHHHHHHhccCCchhHHHHHHHHHH----cCCC-CcHhHHHHHHHHHHhcCCHHHHHHHhhhcC--
Q 039715 438 ---EQVP-ATEVTYSSVLRACASLAALEPGMQVHCLTVK----ANYD-MDVVVANALIDMYAKCGSITDARLVFDMMN-- 506 (805)
Q Consensus 438 ---~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-- 506 (805)
.|-. .--..|..|.+.|.-+|+++.+...|+.-+. .|-. .....+..|.++|.-.|+++.|.+.|....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111 1123456666667778899999988875443 2321 234567888999999999999999887653
Q ss_pred -----CC--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 039715 507 -----DW--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR----G-WRPNNLTFVGVLSACSNGGLLEQGEAYFKSMV 572 (805)
Q Consensus 507 -----~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 572 (805)
.+ ...+.-+|...|.-...+++|+.++.+-+.. + ..-....+.+|..++...|..++|..+.+.-+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22 3456778888998888999999998875431 1 11234578899999999999999988766554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.25 Score=44.85 Aligned_cols=124 Identities=12% Similarity=0.085 Sum_probs=78.4
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC----CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHH
Q 039715 476 DMDVVVANALIDMYAKCGSITDARLVFDMMND----WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN---NLTF 548 (805)
Q Consensus 476 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~ 548 (805)
.|++..--.|.......|+..+|...|++... .|....-.+..+....+++..|...++++.+.. |+ ..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 34444455566666666777777766666542 355566666666667777777777777776632 32 2244
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 549 VGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 549 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
..+..++...|...+|+..|+.... .-|+...-.-...++.++|+.+||..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4555667777777777777777763 3466665555667777777777765443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.049 Score=45.12 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHhcCCCCChH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGW-RPNNLTFVGVLSACSNGG--------LLEQGEAYFKSMVANYGIEPCIE 582 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 582 (805)
+-...|.-+...|++.....+|+.+.+.|+ .|...+|+.++.+..+.. ++-+.+.+|+.|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666677999999999999999999 899999999999876532 345677888898866 8999999
Q ss_pred HHHHHHHHHHh
Q 039715 583 HYTSMVSLLGR 593 (805)
Q Consensus 583 ~~~~li~~~~~ 593 (805)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.60 E-value=1.3 Score=49.15 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=79.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCc---hHHHHHhccCCC--CCcchHHHHHHHHH
Q 039715 59 YATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRL---PDATKLFDEMPE--RNTISFVTTIQGYT 133 (805)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~f~~~~~--~~~~~~~~li~~~~ 133 (805)
...++.-....+.+..|.++-..+-..-... ..++.....-+.+..+. +-+..+=+++.. ..-++|..+.+---
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAY 518 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHH
Confidence 3344555666778888888876664332222 45666666666666332 223333334433 45678888888888
Q ss_pred cCCChhHHHHHHHHHHhCCCC----CCcchHHHHHHHHhccCCccchhhHHHHHHHh
Q 039715 134 VSSQFVEAVGLFSTLHREGHE----LNPFAFTAFLKVLVSMGWAELCPCVFACVYKL 186 (805)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 186 (805)
..|+++-|..+++.=...+-. .+-.-+...++-+...|+.+...+++-++...
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 889999998887764443311 24445667777888888888888777666543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.016 Score=61.38 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=71.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHH
Q 039715 124 SFVTTIQGYTVSSQFVEAVGLFSTLHRE--GHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDA 201 (805)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 201 (805)
....++.......+.+++..++-+.+.. ....-+.|..++++.|.+.|..+.+..++..=...|+-||.+++|.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3444455555555566666666666553 23333445567777777777777777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhC
Q 039715 202 FSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLG 254 (805)
Q Consensus 202 y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 254 (805)
+.+.|++..|.+++. .|...+...+..|+...+.+|.+
T Consensus 148 fl~~~~~~~A~~V~~---------------~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 148 FLKKGNYKSAAKVAT---------------EMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HhhcccHHHHHHHHH---------------HHHHhhccCCchHHHHHHHHHHH
Confidence 777776665555444 44444455555666665555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.02 Score=53.53 Aligned_cols=117 Identities=19% Similarity=0.171 Sum_probs=81.4
Q ss_pred CCChhhHHHHHHHhh-----CCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHH
Q 039715 239 KPNNFTFAFVLKACL-----GLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSF 313 (805)
Q Consensus 239 ~p~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 313 (805)
.-|..+|..++..+. +.|.++-....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~----------- 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA----------- 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence 345666777766665 457888888899999999999999999999987754 2221 1111111
Q ss_pred HHHHHHh-CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCc-hHHHHHHHHHHH
Q 039715 314 MIARYAQ-TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGL-DLGNQIHSLVVR 371 (805)
Q Consensus 314 li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~ 371 (805)
.+.. ..+.+-|++++++|...|+.||..|+..++..+.+.+.. .+..++.-.|-+
T Consensus 111 ---~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 111 ---EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred ---HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1111 234567999999999999999999999999999776653 334444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.054 Score=54.09 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=54.9
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHcCCH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQP-SVMIWRALLGACIIHNNV 629 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 629 (805)
...|++++|...|+.+.+.|.-.+ ....+--++..|...|++++|...|+++ |..| ....|-.++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555666655555554431111 0234445556666666666666665544 2122 133455566667788888
Q ss_pred HHHHHHHHHHhccCCCCcch
Q 039715 630 EIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 630 ~~a~~~~~~~~~~~p~~~~~ 649 (805)
++|...++++++..|+...+
T Consensus 234 ~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHHHCcCCHHH
Confidence 88888888888888876543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.45 Score=47.16 Aligned_cols=67 Identities=10% Similarity=-0.064 Sum_probs=43.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhh--HHHHHHHHhccCCchhHHHHHHHHHHcC
Q 039715 408 NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVT--YSSVLRACASLAALEPGMQVHCLTVKAN 474 (805)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 474 (805)
+...+-.....+.+.|++++|++.|+++...-..+.... ...+..++.+.++++.|...++..++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 444455566677789999999999999987533222111 1234556667777777777777776654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.22 Score=47.75 Aligned_cols=169 Identities=8% Similarity=-0.030 Sum_probs=113.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC--C--------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMND--W--------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGV 551 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~--~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 551 (805)
+++|...|.-..-+++-...|+.-.. . -...-+.++..+.-+|.+.-.+.++++.++..-.-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555554444554444443322 1 2233456777777888888999999999996545567778888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcC----CCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCC-C-CHHHHHHHHHHHHH
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYG----IEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQ-P-SVMIWRALLGACII 625 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~-p-~~~~~~~l~~~~~~ 625 (805)
.+.-.+.|+.+.|..+|+...+..+ +.-...+...+...|.-+.++.+|...+.+++.. | |+..-|+-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888999999999999997765422 2223334444455667788999999999888632 2 33333433333344
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchH
Q 039715 626 HNNVEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
.|+...|++..+.+.+..|....+-
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhh
Confidence 6899999999999999999655443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.4 Score=45.93 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=49.4
Q ss_pred CHHHHHHHHHH--HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 612 SVMIWRALLGA--CIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 612 ~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+..+-|-|..| +..+|++.++.....=+.++.| .+.+|-.+|-.+....+++||..
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 34566777777 6789999999999999999999 99999999999999999999987
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0043 Score=49.17 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI-------P-FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDF 642 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 642 (805)
.|+.+...|.+.|++++|++.+++. + ..|+ ..++..++..+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555555555555555433 1 1122 346777777788888888888888777654
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.034 Score=58.95 Aligned_cols=116 Identities=6% Similarity=0.042 Sum_probs=84.3
Q ss_pred cHhHHHHHHHHHHcCCChHHHHHHHhhCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 039715 276 DLYVAVALLDLYTKSGEISNARRIFEEMPKK------DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSV 349 (805)
Q Consensus 276 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 349 (805)
+......+++......+++.+..++-+.... -..+..++|+.|.+.|..++++.+++.=...|+-||.+|++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444445555555556666666666555421 1234568889999999999999999888889999999999999
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 039715 350 LQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKC 391 (805)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 391 (805)
+..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999988888877666666655555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.1 Score=43.56 Aligned_cols=186 Identities=15% Similarity=0.109 Sum_probs=109.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMN-----DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
..........+...+.+..+...+.... ......+..+...+...+++.++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555566666666666666665543 22444555556666666667777777777666332221 11222222
Q ss_pred -HHHcCCCHHHHHHHHHHHHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC--HHHHHHHHHHHHH
Q 039715 554 -ACSNGGLLEQGEAYFKSMVANYGIEP----CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS--VMIWRALLGACII 625 (805)
Q Consensus 554 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~--~~~~~~l~~~~~~ 625 (805)
++...|.++++...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56667777777777776642 222 2233334444456667777777776654 22233 4566667777777
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 626 HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++.+.|...+.++++..|+....+..++..+...|.++++..
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence 7777777777777777777655566666666666665666654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.052 Score=54.22 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=48.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRPNN----LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG 595 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 595 (805)
.+.|++++|+..|+.+++. .|+. ..+..+..++...|++++|...|+.+.+.|.-.| ....+-.++..+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 4456666666666666663 3443 2455555666666666666666666665543322 2334444555566666
Q ss_pred CHHHHHHHHHcC
Q 039715 596 HLDKAAKLIEGI 607 (805)
Q Consensus 596 ~~~eA~~~~~~~ 607 (805)
+.++|.+.++++
T Consensus 232 ~~~~A~~~~~~v 243 (263)
T PRK10803 232 DTAKAKAVYQQV 243 (263)
T ss_pred CHHHHHHHHHHH
Confidence 666666666544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.88 Score=43.78 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=25.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHhccCCchhHHHHHHHHHH
Q 039715 415 MIVGYVQLGEVGKAMIMFSKMLEEQVPAT--EVTYSSVLRACASLAALEPGMQVHCLTVK 472 (805)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 472 (805)
....+.+.|++++|+..|+++...-.... ......+..++.+.|+++.|...++..++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445556666666666666655321111 11223334444445555555555544444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.26 Score=51.95 Aligned_cols=61 Identities=11% Similarity=0.009 Sum_probs=33.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC-H---hHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMND--WN-E---VSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
+...++.+..+|.+.|++++|...|++..+ |+ . .+|..+..+|...|+.++|++.+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555556666666666666666655442 22 1 2355566666666666666666666555
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.1 Score=52.27 Aligned_cols=188 Identities=11% Similarity=0.038 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhh----hcC---CC--CHhHHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCCH---HH
Q 039715 481 VANALIDMYAKCGSITDARLVFD----MMN---DW--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQ-RGWRPNN---LT 547 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~----~~~---~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t 547 (805)
++..+.++.++.|++++++..-- ... +. -..+|-.+..++.+.-++.+++.+-+.-.. .|..|.. ..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44555666666666666544321 111 11 123556666666666666666666554433 2333311 12
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCC--CC--ChHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC----
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGI--EP--CIEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPS---- 612 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~---- 612 (805)
..++..|....+.++++++.|+...+--.- +| ...+|-.|...|++..++++|.-+..+. .++.=
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 333555566667788899988887632111 12 2367888999999999998887665443 21111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCc----chHHHHHHHHHhcCChHHHhh
Q 039715 613 -VMIWRALLGACIIHNNVEIGRLSAQHILDF--EPEDE----ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+.-.|.-+++..|..-.|.+..+++.++ ...|- .....++++|...|+.|.|.+
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 123344556789999999999888888764 33333 334578999999999888766
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=2.7 Score=46.20 Aligned_cols=206 Identities=13% Similarity=0.052 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC-CCcc------------hHHHHHHHHHcCCC
Q 039715 71 DLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE-RNTI------------SFVTTIQGYTVSSQ 137 (805)
Q Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-~~~~------------~~~~li~~~~~~g~ 137 (805)
.+++|.++. +. .|.+.+|..|...-...-.++.|...|-+... +.+. --.+=|.+| -|.
T Consensus 678 gledA~qfi----Ed--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~ 749 (1189)
T KOG2041|consen 678 GLEDAIQFI----ED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGE 749 (1189)
T ss_pred chHHHHHHH----hc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcc
Confidence 355555552 22 35666676666555555556666666654432 1110 011112222 477
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCc----hhhHHHHHHHHHhcCCHHHHHH
Q 039715 138 FVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSN----AFVGTALIDAFSVCGCVEFARK 213 (805)
Q Consensus 138 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~ 213 (805)
+++|.++|-.|-+..+ .+....+.|++-...+++ ...|-..| ...++.+-..++....+++|.+
T Consensus 750 feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~---r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLI---RNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHH---HccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877765432 233333444443332222 11111111 1344445555555555555555
Q ss_pred HHhhhccccHH---HH---HHHHHHHHH--CCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 039715 214 VFDGLFNDCFE---EA---LNFFSQMRA--VGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLD 285 (805)
Q Consensus 214 ~~~~~~~g~~~---~A---~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 285 (805)
.+..- |+.+ ++ ++.|.++.. ..+.-|....-.+...+.+.|.-++|.+.|-. .+.+ . +.+.
T Consensus 818 yY~~~--~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p-k-----aAv~ 886 (1189)
T KOG2041|consen 818 YYSYC--GDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP-K-----AAVH 886 (1189)
T ss_pred HHHhc--cchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc-H-----HHHH
Confidence 55422 1111 11 122222211 12233344444555566666666665554422 2211 1 2334
Q ss_pred HHHcCCChHHHHHHHhhCCCCC
Q 039715 286 LYTKSGEISNARRIFEEMPKKD 307 (805)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~~ 307 (805)
.+...+++.+|.++-++..-|.
T Consensus 887 tCv~LnQW~~avelaq~~~l~q 908 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQ 908 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchh
Confidence 4555556666666655544443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=2 Score=41.80 Aligned_cols=196 Identities=12% Similarity=0.059 Sum_probs=127.1
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHH-HH
Q 039715 446 TYSSVLRACASLAALEPGMQVHCLTVKA-NYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMIS-GY 520 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~~ 520 (805)
.+......+...+.+..+...+...... ........+..+...+...+++..+.+.+...... +...+..... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3334444444444444444444444331 22334455555666666667777777777766542 1122333333 67
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRP----NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG 595 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 595 (805)
...|++++|...|++... ..| ....+......+...++.+++...+...... ... ....+..+...+...|
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 888999999999998865 344 2334444444467788999999998888743 222 3677888888888999
Q ss_pred CHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 596 HLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 596 ~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
.+++|...+... ...|+ ...+..+...+...|+.+.+...+.+.++..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999888766 23444 455666666666777899999999999999986
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.73 Score=44.37 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=86.7
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCC------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDW------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN--LTFVGVLSAC 555 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~ 555 (805)
.....+...|++++|.+.|+.+... -..+.-.++.++-+.|++++|+..|++.++. -|+. ..+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHH
Confidence 3344556667777777777776531 2334555666777777777777777777763 3332 2222222221
Q ss_pred Hc-------------CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHH--HHHHH
Q 039715 556 SN-------------GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMI--WRALL 620 (805)
Q Consensus 556 ~~-------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~--~~~l~ 620 (805)
+. .+...+|...|+.++.+| =......+|...+..+. +... =-.++
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y----------------P~S~y~~~A~~~l~~l~---~~la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY----------------PNSEYAEEAKKRLAELR---NRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHC----------------cCchHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 11 112233444444444332 22333333433333221 0000 11233
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChHHHh
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEA---THVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 667 (805)
.-|.+.|++..|..-++.+++--|+.+. +...|+..|.+.|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4578889999999999999999887644 4567788899999888543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.048 Score=46.10 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=64.4
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc----chHHHHHHHHHhcCC
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE----ATHVLLSNIYAMARS 662 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 662 (805)
-+++..|++++|++.|.+. .+- ..+..||.-..+++.+|+.++|+.-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4577888999998888765 222 3567899999999999999999999999999865433 357888999999999
Q ss_pred hHHHhh
Q 039715 663 WEKAAS 668 (805)
Q Consensus 663 ~~~a~~ 668 (805)
-|+|..
T Consensus 131 dd~AR~ 136 (175)
T KOG4555|consen 131 DDAARA 136 (175)
T ss_pred hHHHHH
Confidence 998877
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.23 Score=52.46 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHH---------cCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHh
Q 039715 526 SAEVLKVFDLMQQ-RGWRPNNL-TFVGVLSACS---------NGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGR 593 (805)
Q Consensus 526 ~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 593 (805)
.+.|+.+|.+... +.+.|+-. .|..+...+. ......+|.+.-++.. .+.| |+.....++.++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 4578888888881 22677644 3333322211 1234456666666655 4566 67777888888888
Q ss_pred cCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH--HHHHhcCChHHHhh
Q 039715 594 AGHLDKAAKLIEGI-PFQPSV-MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS--NIYAMARSWEKAAS 668 (805)
Q Consensus 594 ~g~~~eA~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~ 668 (805)
.|+++.|..+|++. ...||. .+|......+...|+.++|.+..+++++++|....+-+.-- +.|.. ...++|.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 88899999999977 467764 57888888888999999999999999999997665544433 34554 44667666
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.017 Score=36.87 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
.+|..++..|...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999963
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.026 Score=57.79 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeCCCCCc
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAGDTSHA 693 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~ 693 (805)
..+.+|...|.+.+++.+|++..+++++++|+|.-++..-|.+|...|.++.|.. .|.......|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~---------------df~ka~k~~P 322 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARD---------------DFQKALKLEP 322 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHH---------------HHHHHHHhCC
Confidence 3456666667777777777777777777777777777777777777777777766 1222223446
Q ss_pred cHHHHHHHHHHHHHHHH
Q 039715 694 DMNIIRGMLEWLNMKSR 710 (805)
Q Consensus 694 ~~~~i~~~l~~l~~~~~ 710 (805)
....|...|..+..+++
T Consensus 323 ~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 323 SNKAARAELIKLKQKIR 339 (397)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 66666665555554444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.03 Score=35.70 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
..|..++..+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 468889999999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.013 Score=46.27 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCC---CcchHHHHHHHHHhcCChHHHhh
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDF----EPE---DEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+++.+...|...|++++|+..+++++++ .++ -..++..+|.+|...|++++|.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 47899999999999999999999999874 222 24567889999999999999976
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.4 Score=43.32 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hcCCCCChHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA----NYGIEPCIEH 583 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 583 (805)
....++..+...|++++|+.+.+++... .| |...+..++.++...|+..+|.+.|+.+.. .+|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4555667777888888888888888884 45 566888888888888888888888877643 4577787654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.55 Score=46.56 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC---CHHHHHHHHHcC-CCCC-CHHHHHH
Q 039715 545 NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG---HLDKAAKLIEGI-PFQP-SVMIWRA 618 (805)
Q Consensus 545 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~p-~~~~~~~ 618 (805)
...|..|..+|...|+.+.|..-|....+ +.| ++..+..+...+..+. ...++.++|+++ ...| |+....-
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 34555555555555555555555555542 222 3444444444443321 334555666554 2334 3445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
|...+...|++.+|...++.+++..|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 55667788888888888888888776443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.29 Score=42.59 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 541 WRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 541 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
+.|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5567777777777777777777777777777777776666666666654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.02 E-value=5.4 Score=41.76 Aligned_cols=81 Identities=11% Similarity=0.012 Sum_probs=56.9
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHH
Q 039715 53 EFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTISFVTTIQ 130 (805)
Q Consensus 53 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 130 (805)
+.|..+|..+++-+..++..+..++++.++...-+ --..+|..-++.=....++.....+|.+-.. -+...|..-+.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp-~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~ 117 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP-IMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLE 117 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc-cccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHH
Confidence 34567899999999999999999999999865322 2234555555554555777888888877543 36667877776
Q ss_pred HHHc
Q 039715 131 GYTV 134 (805)
Q Consensus 131 ~~~~ 134 (805)
---+
T Consensus 118 YIRr 121 (660)
T COG5107 118 YIRR 121 (660)
T ss_pred HHHh
Confidence 5544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.39 Score=42.23 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=46.2
Q ss_pred HHHHHhcCCHHHHHHHHHcC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 588 VSLLGRAGHLDKAAKLIEGI----PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.....+.|++++|.+.|+.+ |..|- .-.--.|+.+|.+.|++++|...+++.+++.|.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34455678888888877765 43332 235566888999999999999999999999998765
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.52 Score=41.46 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhccCCCCc
Q 039715 629 VEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~ 647 (805)
...|...|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 6678888889998888664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.87 E-value=9 Score=43.52 Aligned_cols=180 Identities=14% Similarity=0.045 Sum_probs=105.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHH----HHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHh
Q 039715 93 ATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQG----YTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLV 168 (805)
Q Consensus 93 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 168 (805)
....-|+++.+..-++.|..+-..-.. +...-..+... +-+.|++++|...|-+-... +.|. .+++-+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 345667778888888888887765433 22222233333 45689999999888776542 2332 3344444
Q ss_pred ccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHH
Q 039715 169 SMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFV 248 (805)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 248 (805)
.......-...++.+.+.|+. +..--+.|+..|.+.++.+.-.+..+....|.+ .+-.-..
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~------------------~fd~e~a 469 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEW------------------FFDVETA 469 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcce------------------eeeHHHH
Confidence 433444444566777777863 344557899999999999877776664321111 1123344
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC
Q 039715 249 LKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK 306 (805)
Q Consensus 249 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 306 (805)
+..|.+.+-+++|..+-.... ....+...+ +-..|++++|.+.+..++-.
T Consensus 470 l~Ilr~snyl~~a~~LA~k~~-----~he~vl~il---le~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 470 LEILRKSNYLDEAELLATKFK-----KHEWVLDIL---LEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHhChHHHHHHHHHHhc-----cCHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence 455555555555544432221 123333333 34568899999999998743
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.75 E-value=5.5 Score=40.50 Aligned_cols=98 Identities=9% Similarity=0.067 Sum_probs=44.9
Q ss_pred hHHHHHHHHhccCCchh---HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHH
Q 039715 446 TYSSVLRACASLAALEP---GMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISG 519 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 519 (805)
++..+..++...+..+. +..+.+.+... .+..+.++-.-++...+.++.+++.+++.+|... ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34444555555444333 33333333222 1222333333445555566667777776666522 22344444443
Q ss_pred H---HhCCChHHHHHHHHHHHHcCCCCCH
Q 039715 520 Y---SMHGLSAEVLKVFDLMQQRGWRPNN 545 (805)
Q Consensus 520 ~---~~~g~~~~A~~l~~~m~~~g~~p~~ 545 (805)
+ ..+ ....|...++.++...+.|..
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 3 332 234555666665554455543
|
It is also involved in sporulation []. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.74 E-value=9.3 Score=43.07 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=50.5
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 039715 277 LYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACAT 355 (805)
Q Consensus 277 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 355 (805)
..++..+|+.+.-.|++++|-...-.|...+...|.--+..+...++......+ +.....+.+...|-.+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 456777888888888888888888888887777787777777777766543332 2222122344556666666654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.38 Score=50.88 Aligned_cols=109 Identities=9% Similarity=0.012 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHh---------cCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC
Q 039715 560 LLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGR---------AGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHN 627 (805)
Q Consensus 560 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~---------~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 627 (805)
..+.|..+|.+......++|+ ...|..+...+.. .....+|.++.++. ...| |+.....++.+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456788888888755567775 3455555443321 23445666666644 3344 6777778888888889
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 628 NVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 628 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.+.|...+++++.++|+.+.++...|.+..-.|+.++|.+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999987
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.33 E-value=15 Score=43.65 Aligned_cols=247 Identities=13% Similarity=0.116 Sum_probs=119.9
Q ss_pred CchhhHHHHHHHHHhcC--CHHHHHHHHhhhc----cccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHH
Q 039715 190 SNAFVGTALIDAFSVCG--CVEFARKVFDGLF----NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKS 263 (805)
Q Consensus 190 ~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 263 (805)
|+ .-.-.+|..|.+.+ .++.|.....+++ .-..++|++.+.-+ .+....|+..|..| +++.|..
T Consensus 789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~L-----vdvn~lfn~ALgtY----Dl~Lal~ 858 (1265)
T KOG1920|consen 789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFL-----VDVNELFNSALGTY----DLDLALL 858 (1265)
T ss_pred cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhh-----ccHHHHHHhhhccc----chHHHHH
Confidence 44 45567888888887 6777766666553 22233333333322 22333444444332 4444444
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHH-------------cCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 039715 264 AHGCALKTCYEMDLYVAVALLDLYT-------------KSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVEL 330 (805)
Q Consensus 264 ~~~~~~~~g~~~~~~~~~~li~~y~-------------~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (805)
+-+.-. .|+.-|-.+++-+- ..+++++|+.-+.++. ...|.-.+..--+.|.+.+|+.+
T Consensus 859 VAq~Sq-----kDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l 930 (1265)
T KOG1920|consen 859 VAQKSQ-----KDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL 930 (1265)
T ss_pred HHHHhc-----cChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe
Confidence 333221 12222222221111 1244555555555543 22344444444455666666655
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChh
Q 039715 331 FCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHV 410 (805)
Q Consensus 331 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 410 (805)
+ .|+...+..+..+|+.. +.+.. .++-..-+|.++|+.++|.+.
T Consensus 931 y--------~~~~e~~k~i~~~ya~h------------L~~~~------~~~~Aal~Ye~~GklekAl~a---------- 974 (1265)
T KOG1920|consen 931 Y--------KPDSEKQKVIYEAYADH------------LREEL------MSDEAALMYERCGKLEKALKA---------- 974 (1265)
T ss_pred e--------ccCHHHHHHHHHHHHHH------------HHHhc------cccHHHHHHHHhccHHHHHHH----------
Confidence 3 56666666555554321 11111 122233456677777776543
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh--hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV--TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
|...|++.+|+.+-.+|.. .-|.. +-..|..-+...++.-+|-++....... ..--+..
T Consensus 975 --------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~l 1035 (1265)
T KOG1920|consen 975 --------YKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVAL 1035 (1265)
T ss_pred --------HHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHH
Confidence 4456777777777666632 11221 1134445555556555555554443321 1233456
Q ss_pred HHhcCCHHHHHHHhhhcCCCC
Q 039715 489 YAKCGSITDARLVFDMMNDWN 509 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~~~ 509 (805)
|++...+++|.++-......|
T Consensus 1036 l~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1036 LCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HhhHhHHHHHHHHHHhcccch
Confidence 777777777777765554333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.62 Score=40.54 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH--------------HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC----
Q 039715 546 LTFVGVLSACSNGGLLEQGEAYFKSM--------------VANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI---- 607 (805)
Q Consensus 546 ~t~~~ll~a~~~~g~~~~a~~~~~~m--------------~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---- 607 (805)
.++..++-++++.|+++....+.+.. .....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34444555555555555544444322 112245577788888888888888888888887644
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 039715 608 PFQPSVMIWRALLGACIIH 626 (805)
Q Consensus 608 ~~~p~~~~~~~l~~~~~~~ 626 (805)
+++-+...|..|+.=+...
T Consensus 83 ~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4444567788887655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.48 Score=42.76 Aligned_cols=54 Identities=22% Similarity=0.145 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
....++..+...|++++|+..+++++..+|-+...|..+..+|...|+..+|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~ 117 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALR 117 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 456677778889999999999999999999999999999999999999999866
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.52 Score=48.63 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=89.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCC
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGH 596 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 596 (805)
...|.+.|++..|...|++.... -+ +...-..++..... . .-...+..|.-.|.+.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhhh
Confidence 55677788888888888776652 11 11111112222211 1 123456777888889999
Q ss_pred HHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 597 LDKAAKLIEGI-PF-QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 597 ~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.+|++..++. .. .+|+-..-.=+.+|...|+++.|+..|+++++++|+|-.+..-|..+-.+..++.+..+
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887755 22 34666666778889999999999999999999999998888888777666666555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.07 E-value=3.7 Score=43.77 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=47.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCC--CCCH--HHHHHHHHHHHHcCC-
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPF--QPSV--MIWRALLGACIIHNN- 628 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~--~p~~--~~~~~l~~~~~~~g~- 628 (805)
.+.+.|+.++|++.|++|.+.+.......+...|+..|...+.+.++..++.+-.. -|.. ..|++.+--.+.-|+
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~ 347 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDK 347 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccc
Confidence 33445555555555555554322111223444555555555555555555544320 1222 234333323332222
Q ss_pred --------------HHHHHHHHHHHhccCCCCcchH
Q 039715 629 --------------VEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 629 --------------~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
-..|.++..++.+.+|..+...
T Consensus 348 fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 348 FSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred cCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 1346788999999999665543
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.04 E-value=3 Score=40.62 Aligned_cols=160 Identities=16% Similarity=0.099 Sum_probs=87.5
Q ss_pred HhcCCHHHHHHHhhhcCCC------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CC-
Q 039715 490 AKCGSITDARLVFDMMNDW------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSN---GG- 559 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g- 559 (805)
.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....-..-...-|...|.+++. ..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 3557788888888777643 2233444556677788888888888887773222122334433433331 11
Q ss_pred ---C---HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHH-H-HHHHHHHHHcCCHHH
Q 039715 560 ---L---LEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMI-W-RALLGACIIHNNVEI 631 (805)
Q Consensus 560 ---~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~-~-~~l~~~~~~~g~~~~ 631 (805)
+ ..+|..-|+.++.+| |+.. -..+|...+..+. |... . .+...-|.+.|.+.-
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 1 223333344444332 3211 1111111111110 1110 1 123345778888888
Q ss_pred HHHHHHHHhccCCCCc---chHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFEPEDE---ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|..-++.+++--|+.+ .++..|.++|.+.|..++|.+
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 8888888888766544 345667788999999998887
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.43 Score=46.33 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=64.5
Q ss_pred HHHhccCC--CCCcchHHHHHHHHHcC-----CChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHH
Q 039715 111 TKLFDEMP--ERNTISFVTTIQGYTVS-----SQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACV 183 (805)
Q Consensus 111 ~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 183 (805)
++.|...+ ++|-.+|-+++..+... +..+--...++.|.+.|+.-|..+|..||+
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~Lln------------------ 115 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLN------------------ 115 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHH------------------
Confidence 34566665 56777777777666442 233333344555555555555555555554
Q ss_pred HHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh---ccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCC
Q 039715 184 YKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL---FNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDT 257 (805)
Q Consensus 184 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 257 (805)
.+-|..-.. ..+|+++ --..-+-+++++++|...|+.||..+-..++.++.+.+.
T Consensus 116 -----------------vfPKgkfiP--~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 116 -----------------VFPKGKFIP--QNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -----------------hCccccccc--HHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 443322211 1223322 001123478889999999999999999999999887765
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.89 E-value=3.3 Score=38.42 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHH-----HHHHHhcCCHHHH
Q 039715 528 EVLKVFDLMQQRGWRPNNLTFV--GVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM-----VSLLGRAGHLDKA 600 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~eA 600 (805)
+.....+++....-+....++. .+...+...|++++|...++..... |..+.+..+ ..+....|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5566666666643222222232 2344578899999999998876632 433444444 4567789999999
Q ss_pred HHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 039715 601 AKLIEGIPFQPS--VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 601 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
+..++... .++ ...-..-+..+...|+.++|+..|+++++.+++.+
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 99998875 343 22344455678999999999999999999886543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.5 Score=43.49 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=77.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHH---HHHHHHcCCH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRAL---LGACIIHNNV 629 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l---~~~~~~~g~~ 629 (805)
.....|+..++...|+..... .| +...--.|+..|...|+.++|..++..+|.+-...-|..+ +..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678888888888887743 33 3456667888899999999999999998855444344332 2222222222
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 630 EIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 630 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+. ..+++-+.-+|+|...-..|+..|...|+.++|.+
T Consensus 220 ~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale 257 (304)
T COG3118 220 PEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALE 257 (304)
T ss_pred CCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 211 23445567789999999999999999999999987
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.60 E-value=2.7 Score=37.53 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRA-GHLDKAAKLIEGIPFQPSVMIWRALLGACI 624 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~ 624 (805)
...++..|.+.+.++++..++.++.. +...++.+... ++.+.|.+++.+. .+...|..++..|.
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 33455556666666666665544321 11222333333 6666676666653 24556666665554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.57 E-value=14 Score=40.60 Aligned_cols=184 Identities=13% Similarity=0.113 Sum_probs=131.0
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
++..+|...++--.+.|+.+.+.-+|++..-+ =...|-..+.-....|+.+-|-.++....+--++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35678888888888999999999999988754 334566666666666998888888887776544433333333333
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHH---HHHHcC-CCCCCHHHHHHHHHH-----H
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAA---KLIEGI-PFQPSVMIWRALLGA-----C 623 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~---~~~~~~-~~~p~~~~~~~l~~~-----~ 623 (805)
-+-..|+.+.|..+++.+...+ |+. ..-.--+.+..|.|..+.+. +++... +.+-+..+...+.-- +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4677899999999999998763 654 33344467788899999988 555543 223333333322221 4
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSW 663 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 663 (805)
...++.+.|..++.++.+..|++...|..+.++...++..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 5578999999999999999999999999999887766633
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.38 E-value=6.2 Score=38.51 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=42.8
Q ss_pred HhcCChHHHHHHHhcCCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHh
Q 039715 389 AKCGRMENSVELFAESPKRN------HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACA 455 (805)
Q Consensus 389 ~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 455 (805)
.+.|++++|.+.|+.+..+. ..+--.++-++-+.+++++|+..+++....-..-...-|..-|.+.+
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 36678888888887776532 22334456677788888888888888877543333344555555544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.17 E-value=2.7 Score=37.48 Aligned_cols=126 Identities=15% Similarity=0.143 Sum_probs=82.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCCh
Q 039715 59 YATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQF 138 (805)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 138 (805)
...++..+...+.+......+..+++.+. .++...|.|+..|++.. .......|.. ..+......+++.+.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 45677777777889999999999988874 67889999999999864 3344455542 23445566688888888888
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHHhcc-CCccchhhHHHHHHHhCCCCchhhHHHHHHHHH
Q 039715 139 VEAVGLFSTLHREGHELNPFAFTAFLKVLVSM-GWAELCPCVFACVYKLGHDSNAFVGTALIDAFS 203 (805)
Q Consensus 139 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 203 (805)
+++.-++.++.. +...+..+... ++.+.|.+.... ..+...|..++..+.
T Consensus 86 ~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 888888877744 22333333333 555555554443 124456666665544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.3 Score=43.18 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHH
Q 039715 55 NSHSYATSLQSCI-----QNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTI 129 (805)
Q Consensus 55 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 129 (805)
|-.+|...+..+. ++++.+---..+..|.+-|++.|..+|+.||+.+-|..-.. -|.+-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP----------------~nvfQ 129 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP----------------QNVFQ 129 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc----------------HHHHH
Confidence 3445555554432 34566666666777888888888888888888765432211 11122
Q ss_pred HHHHcC-CChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCC
Q 039715 130 QGYTVS-SQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGW 172 (805)
Q Consensus 130 ~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 172 (805)
..+..- .+-.-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 222211 1224588999999999999999999999999887663
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.14 Score=32.45 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
.+|..+...|...|++++|...++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 367888888999999999999999999999853
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.04 E-value=3.6 Score=39.48 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhh----ccccHHHHHHHHHHHH
Q 039715 192 AFVGTALIDAFSVCGCVEFARKVFDGL----FNDCFEEALNFFSQMR 234 (805)
Q Consensus 192 ~~~~~~li~~y~~~g~~~~A~~~~~~~----~~g~~~~A~~~~~~m~ 234 (805)
+..++.-..+|..+|..+.|-..+++. .+-++++|+.++++-.
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 356677788899999999888887765 5667777777776643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.86 Score=44.66 Aligned_cols=82 Identities=22% Similarity=0.272 Sum_probs=37.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCC
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRPN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGH 596 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 596 (805)
+.|++.+|...|...++.. |+ ...+-.|..++...|++++|..+|..+.+.|+-.|. ++.+--|+....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3344555555555555532 22 113344455555555555555555555544433332 2333344444444444
Q ss_pred HHHHHHHHH
Q 039715 597 LDKAAKLIE 605 (805)
Q Consensus 597 ~~eA~~~~~ 605 (805)
.++|...++
T Consensus 231 ~d~A~atl~ 239 (262)
T COG1729 231 TDEACATLQ 239 (262)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.76 E-value=15 Score=38.80 Aligned_cols=154 Identities=8% Similarity=-0.071 Sum_probs=87.0
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC--hH
Q 039715 508 WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP---NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC--IE 582 (805)
Q Consensus 508 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 582 (805)
....+|..++..+.+.|+++.|...+.++...+..+ .......-....-..|+-.+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 355678888899999999999999998888743222 2233334445566778888888888877752 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 583 HYTSMVSLLGRAGHLDKAAKL-IEGIPFQPSVMIWRALLGACIIH------NNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
....+...+.. ..+..... ........-...+..+..-+... ++.+++...|+++.++.|+....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000012333333333344 78899999999999999999889988888
Q ss_pred HHHhcCChH
Q 039715 656 IYAMARSWE 664 (805)
Q Consensus 656 ~~~~~g~~~ 664 (805)
.+...-..+
T Consensus 301 ~~~~~~~~~ 309 (352)
T PF02259_consen 301 FNDKLLESD 309 (352)
T ss_pred HHHHHHHhh
Confidence 776554433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.71 Score=39.32 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=25.9
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 039715 519 GYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMV 572 (805)
Q Consensus 519 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 572 (805)
+++..|+.+.|++.|.+.+. +-| +...|+.-..++.-+|+.++|+.-+++..
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 34455555555555555554 233 33345555555555555555555544444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.9 Score=46.65 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=87.7
Q ss_pred hHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCC
Q 039715 244 TFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDL 323 (805)
Q Consensus 244 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 323 (805)
-...++.-+-+.|..+.|.++-. |.. .-.++..++|+++.|.++-++.. +...|..|.....++|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 35666666777788887777643 221 23455678999999999888765 55689999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhc
Q 039715 324 SIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAE 403 (805)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 403 (805)
.+-|.+.|++..+ |..++-.+...|+.+.-.++.+.....| -+|....++...|++++..+++.+
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999988653 5566666777788777777777776665 233444445555666666555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.55 E-value=8 Score=40.49 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=38.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC---Ch----hhHHHHHHHHHH---cCChHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 039715 385 MDVYAKCGRMENSVELFAESPKR---NH----VTWNTMIVGYVQ---LGEVGKAMIMFSKMLEEQVPATEVTYSSVLRAC 454 (805)
Q Consensus 385 i~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 454 (805)
+-.|-...+++.-.++.+.+... ++ ..-....-++.+ .|+.++|++++..+......++..||..+...|
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 33455666666666666665542 11 111122334445 677777777777755555566666666655544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=2.1 Score=38.69 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=7.7
Q ss_pred hCCChHHHHHHHHHHHH
Q 039715 522 MHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~ 538 (805)
+.|++++|..+|+-+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~ 65 (165)
T PRK15331 49 NQGRLDEAETFFRFLCI 65 (165)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 34444444444444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.49 E-value=24 Score=40.40 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCCcchHHHHHHHHHhcC
Q 039715 587 MVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILD-FEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g 661 (805)
++..+....+.+++..+.+... +-++..|-.++..+...+..+.-.+..+++++ +.-++.-.-..+.+++++.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 3455666777888888888776 34788899999988888866655555555544 33333333445556666555
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.45 E-value=19 Score=42.73 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=79.6
Q ss_pred cCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHh----ccCCchhHHHH
Q 039715 391 CGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACA----SLAALEPGMQV 466 (805)
Q Consensus 391 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~~ 466 (805)
.++++.|+.-+.++. ...|.-.+.---++|.+.+|+.++ +|+...+.-+..+|+ ....+++|
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~A--- 958 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEA--- 958 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHH---
Confidence 356777877776665 223444555556788889888775 566666655555443 22333333
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 039715 467 HCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL 546 (805)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 546 (805)
.-+|.++|+.++|.+.+ ...|++.+|+.+-.++.. .-|..
T Consensus 959 -------------------al~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~---~~de~ 998 (1265)
T KOG1920|consen 959 -------------------ALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSE---GKDEL 998 (1265)
T ss_pred -------------------HHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcC---CHHHH
Confidence 23466666666665443 334555555555554432 11111
Q ss_pred H--HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHc
Q 039715 547 T--FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEG 606 (805)
Q Consensus 547 t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 606 (805)
. -..|.+-+...++.-+|-++..+... +|. --+..|+++-.+++|..+...
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYLS----DPE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHhc----CHH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 1 12344445555555555555444332 121 223455555555666555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.39 E-value=3.2 Score=45.06 Aligned_cols=131 Identities=13% Similarity=0.034 Sum_probs=94.5
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCC
Q 039715 57 HSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSS 136 (805)
Q Consensus 57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 136 (805)
...+.+++.+-+.|.++.|+++-. |+ ..-.....++|+++.|.+..++.. +...|..|.....++|
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcC
Confidence 446778888888889998888732 22 234566678999999999888876 5568999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 039715 137 QFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFD 216 (805)
Q Consensus 137 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 216 (805)
+++-|.+.|.+... |..|+-.+...|+.+.-.++-......| -+|.....+.-.|++++..+++.
T Consensus 362 ~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 362 NIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp BHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998876 5667777778888777777776666655 24555555666677777776665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.34 E-value=3.8 Score=45.10 Aligned_cols=147 Identities=16% Similarity=0.077 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHH----cCCCHHHHHHHHHHHHHhcCCCCChHH
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQRG-WRPNN-----LTFVGVLSACS----NGGLLEQGEAYFKSMVANYGIEPCIEH 583 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~ 583 (805)
..++....-.|+-+.+++++.+..+.+ ++-.. ..|..++..+. .....+.+.++++.+..+| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 334444455566666666666654421 11111 12233333222 2456778888888887654 66554
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHcCCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH-HHHH
Q 039715 584 YTSM-VSLLGRAGHLDKAAKLIEGIPF------QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV-LLSN 655 (805)
Q Consensus 584 ~~~l-i~~~~~~g~~~eA~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~ 655 (805)
|.-. ..++...|++++|++.|++.-. +-....+--+.+.+...+++++|...+.++.+...-....|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4433 4666778888888888885420 112234455566777889999999999999987776555554 4466
Q ss_pred HHHhcCCh
Q 039715 656 IYAMARSW 663 (805)
Q Consensus 656 ~~~~~g~~ 663 (805)
.|...|+-
T Consensus 349 c~~~l~~~ 356 (468)
T PF10300_consen 349 CLLMLGRE 356 (468)
T ss_pred HHHhhccc
Confidence 78888887
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.2 Score=43.68 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC-HHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS-VMIWRALL 620 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~-~~~~~~l~ 620 (805)
.|..-+..+ ..|++.+|.+-|...++.|.-.+ ....+--|+..+...|++++|...|..+ |..|- +...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344443332 44556666666666665542111 1233444666666666666666665544 32222 23344444
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
......|+.++|...++++++--|+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 5555666666666666666666665544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.94 E-value=3.9 Score=43.65 Aligned_cols=53 Identities=9% Similarity=-0.015 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCChHHHhh
Q 039715 616 WRALLGACIIHNNVEIGRLSAQHILDFEPE--DEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 616 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
-..|...+++.|+.++|++.++.+++..|. +-..+..|.+.|...+++.|+..
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 344445555555555555555555554442 33445555555555555555555
|
The molecular function of this protein is uncertain. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.23 Score=49.44 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=55.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCC-CHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP-FQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~ 628 (805)
..-|.++|.+++|+..|.... .+.| ++..|..-..+|.+..++..|+.=.+..- +.. -.-.|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 344667777777777776655 4455 66666666677777777766655444321 111 12234444444455667
Q ss_pred HHHHHHHHHHHhccCCCC
Q 039715 629 VEIGRLSAQHILDFEPED 646 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~ 646 (805)
.++|.+-++.+++++|++
T Consensus 181 ~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhHHHHHhhCccc
Confidence 777777777777777764
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.27 Score=31.79 Aligned_cols=29 Identities=10% Similarity=-0.058 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
+|..|...|...|++++|+.++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47788888999999999999999966543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.58 E-value=8.8 Score=42.30 Aligned_cols=111 Identities=12% Similarity=0.056 Sum_probs=60.9
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHH-HHHHHHHHhcCCHHHHHHHhhhcCCC-------CHhHHHHHHHHHHhCCChHHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVA-NALIDMYAKCGSITDARLVFDMMNDW-------NEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~ 530 (805)
..+.+.+++..+.+.- |+...+ ---..++...|++++|.+.|++.... ....+--+.-.+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3445555555555432 222222 22345566677788888877765421 2223334455566677888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCH-------HHHHHHHHHHH
Q 039715 531 KVFDLMQQRGWRPNNLTFVGVLSAC-SNGGLL-------EQGEAYFKSMV 572 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~-------~~a~~~~~~m~ 572 (805)
+.|.++.+.. +-...+|..+..+| ...|+. ++|..+|.++.
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8888887742 22344444444443 345555 66666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.55 E-value=1.6 Score=43.72 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=57.8
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHH----HHHHHhcCCH
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM----VSLLGRAGHL 597 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~~~~~g~~ 597 (805)
..|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-+..++++..+ -.|+...|.-+ ...+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 456677777777777664 3445556666666777777777777666666533 23444333222 2223345555
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 039715 598 DKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSA 636 (805)
Q Consensus 598 ~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 636 (805)
++|++.-++. .++| |...-.+........|+..++.+..
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 5555554433 2222 2223333444444445555555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.32 Score=44.72 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=50.2
Q ss_pred HHhcCCHHHHHHHHHcC----CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 039715 591 LGRAGHLDKAAKLIEGI----PFQP---SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSW 663 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~----~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 663 (805)
+.+.|.+++|.+-|... |--+ -.+.|..-..+..+.+..+.|+....+++++.|.+..++..-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44455555555554432 1111 1234555555666777788888888888888887777777777788888888
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
++|..
T Consensus 185 eeale 189 (271)
T KOG4234|consen 185 EEALE 189 (271)
T ss_pred HHHHH
Confidence 88776
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.99 E-value=7.2 Score=35.20 Aligned_cols=103 Identities=21% Similarity=0.188 Sum_probs=61.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHcCCHH
Q 039715 553 SACSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAAKLIEGIP-FQPSVMIWRALLGACIIHNNVE 630 (805)
Q Consensus 553 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~ 630 (805)
+.-...++.+++..+++.+. -+.|.. ++-..-+..+.+.|++++|+.+|+++. -.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456677888888887776 456643 333444566777888888888888773 2344445566777666554444
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 039715 631 IGRLSAQHILDFEPEDEATHVLLSNIYAM 659 (805)
Q Consensus 631 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 659 (805)
.=....+++++..| ++.+-..+..+...
T Consensus 95 ~Wr~~A~evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 95 SWRRYADEVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHHhcCC-ChHHHHHHHHHHHh
Confidence 44555666777666 34444444434333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.80 E-value=13 Score=33.90 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=82.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHH-----HHHHHh
Q 039715 520 YSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM-----VSLLGR 593 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~ 593 (805)
+++.++.++|+.-|..+.+.|...-++ .-........+.|+...|...|+++-.. .|.+....-+ ..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 466788888999999888877654333 2223334467888999999999988744 3333222222 234667
Q ss_pred cCCHHHHHHHHHcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 594 AGHLDKAAKLIEGIPFQPSV---MIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 594 ~g~~~eA~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
.|.+++....++.+....++ ..-.+|.-+-.+.|++..|...|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88999888888877433332 3467787788889999999999998876
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.23 Score=44.66 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=42.2
Q ss_pred HHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 039715 162 AFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFD 216 (805)
Q Consensus 162 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 216 (805)
.+++.+.+.+.+......++.+.+.+...+....+.|+..|++.++.+...+.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3566677778888888888888887767778899999999999987776666655
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.05 E-value=22 Score=35.54 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=62.7
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCC-HhHHH---HHHHHHHhCCChHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWN-EVSWN---AMISGYSMHGLSAEV 529 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~---~li~~~~~~g~~~~A 529 (805)
....|+...+...+....... +-+..+.-.|+..|...|+.+.|..++..++... ...|- +-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344556666666666555543 2234555667888888899999999998887431 11121 122333333333333
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 530 LKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 530 ~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
..+-.+.-. .| |...-..+...+...|+.++|.+.+=.+.+
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333332 45 333444455556667777777665555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.7 Score=29.20 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN 544 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 544 (805)
.+|..++..|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4677778888888888888888888877 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.082 Score=47.66 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=87.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhH
Q 039715 61 TSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVE 140 (805)
Q Consensus 61 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (805)
.+++.+.+.+.+......+..+.+.+...+....+.|+..|++.++.+...+.++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677777888999999999999887777889999999999999998999998885433 445667788888888888
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCC
Q 039715 141 AVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGC 207 (805)
Q Consensus 141 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 207 (805)
|.-++.++....- .+..+...++++.|.+.... ..+..+|..+++.+...++
T Consensus 89 a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 8888877654211 11112233444444422221 2456777777777765543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.78 E-value=43 Score=38.46 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=15.3
Q ss_pred HHhcCCHHHHHHHHHcCCCCC
Q 039715 591 LGRAGHLDKAAKLIEGIPFQP 611 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~~~~p 611 (805)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457899999999999988777
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.72 E-value=9 Score=39.03 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=57.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHcCCCHHHHHHHHHHHH---HhcCCCCChHHHHH-
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRP-N----NLTFVGVLSACSNGGLLEQGEAYFKSMV---ANYGIEPCIEHYTS- 586 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~- 586 (805)
|..++...+.++++++.|+....---.. | -..+.++.+.+....++++|.-+..+.. ..+++..-..-|.+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444444555555555555554311111 1 1234555555555555555554443322 12222221122222
Q ss_pred ----HHHHHHhcCCHHHHHHHHHcCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 587 ----MVSLLGRAGHLDKAAKLIEGIP----FQPS----VMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 587 ----li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
|.-.|...|++-+|.+..++.. ...| ......+.+.|+..|+.|.|..-|+++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2234555566555555554330 1122 22345555666666666666666665554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.66 E-value=20 Score=34.59 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKM 435 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m 435 (805)
|.--..+|-...++++|..-+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 444444555555666665555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.59 E-value=12 Score=35.30 Aligned_cols=170 Identities=13% Similarity=0.043 Sum_probs=99.7
Q ss_pred hcCCHHHHHHHhhhcC--CC-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHH
Q 039715 491 KCGSITDARLVFDMMN--DW-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEA 566 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 566 (805)
..|-..-|+--|.+.. .| -+..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++...|++..|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHH
Confidence 3344555555554443 23 355778788788888999999999998888 4553 2343333335566788888887
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 567 YFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKL-IEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 567 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
-|...-. -+|+...-.-.+.+-.+.-+..+|..- .++.. ..|..-|+.-+-.+..-.-.++ .+++++.+...+
T Consensus 155 d~~~fYQ---~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~~ 228 (297)
T COG4785 155 DLLAFYQ---DDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISEE--TLMERLKADATD 228 (297)
T ss_pred HHHHHHh---cCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccHH--HHHHHHHhhccc
Confidence 6655443 344332222222222344566777644 44443 4566667766666543222221 233344333333
Q ss_pred C-------cchHHHHHHHHHhcCChHHHhh
Q 039715 646 D-------EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 646 ~-------~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+ .++|.-|+.-|...|..++|..
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3 4678889999999999999976
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.41 E-value=1.1 Score=30.43 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL 546 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 546 (805)
.|..+...|...|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 456666777777777777777777776 355543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.81 Score=29.53 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQ 537 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~ 537 (805)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777777777777777744
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.36 E-value=13 Score=32.07 Aligned_cols=52 Identities=12% Similarity=-0.007 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 616 WRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 616 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
.+.-+++...+|+-++-.+++..+.+-+..+|+..+-++++|.+.|...++.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ 140 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREAN 140 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHH
Confidence 3344455566666666666666666544445666666666666666666553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.02 E-value=18 Score=41.54 Aligned_cols=214 Identities=13% Similarity=0.114 Sum_probs=86.5
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHhhCC---CCCcccHHHHHHHHHhCCC-------hhHHHHHHHHHHHCCCCCChh--
Q 039715 277 LYVAVALLDLYTKSGEISNARRIFEEMP---KKDVIPWSFMIARYAQTDL-------SIDAVELFCRMRQAFVAPNQF-- 344 (805)
Q Consensus 277 ~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-- 344 (805)
..+| ++|-.+.|+|++++|.++..+.. .+....+-..+..|+.+.+ -+....-|++..+.....|.+
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 3445 46667778888888888883332 2233456666677766532 234555566665543322443
Q ss_pred HHHHHHHHHhccC-C-------chHHHHHHHHHHHhCCC-----ccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh
Q 039715 345 TFVSVLQACATME-G-------LDLGNQIHSLVVRVGLL-----SDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVT 411 (805)
Q Consensus 345 t~~~ll~~~~~~~-~-------~~~a~~~~~~~~~~g~~-----~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~ 411 (805)
..-.++..|--.. . .|.-..+.=.+++.... .+..++..|=+...+-| ...|.. ..++..
T Consensus 191 AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~ 263 (613)
T PF04097_consen 191 AVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL 263 (613)
T ss_dssp HHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------
T ss_pred HHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH
Confidence 2223333332211 1 11222222222222211 11222222222211111 122222 122233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcC-CCCcHhHHHHHHHHHH
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKAN-YDMDVVVANALIDMYA 490 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~ 490 (805)
| ...+.-.|+++.|++.+-+ ..+...|.+.+...+..+.-+.-.+... ..+.... -.+...-+..||..|.
T Consensus 264 Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 264 Y---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred H---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 3 3445568999999998877 3334566666666665544333222211 2222111 0111244667788887
Q ss_pred h---cCCHHHHHHHhhhcC
Q 039715 491 K---CGSITDARLVFDMMN 506 (805)
Q Consensus 491 ~---~g~~~~A~~~~~~~~ 506 (805)
+ ..+..+|.+.|--+.
T Consensus 336 ~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGG
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6 456777777776554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.85 E-value=12 Score=34.17 Aligned_cols=135 Identities=9% Similarity=0.089 Sum_probs=89.0
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-CCcHhHHHHHHHHHHcC-CChHHHHHHHhhCC
Q 039715 227 LNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCY-EMDLYVAVALLDLYTKS-GEISNARRIFEEMP 304 (805)
Q Consensus 227 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~-g~~~~A~~~f~~~~ 304 (805)
++.++.+.+.++.|+...|..++..+.+.|.+..-.++ +..++ .++..+...|++.-.+. .-.+-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566777889999999999999999999987655444 33444 44444554554432211 11344555555543
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 039715 305 KKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVG 373 (805)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 373 (805)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++...+.+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 35677888999999999999998875332 33344567777777777777777777666543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.83 E-value=2.9 Score=41.76 Aligned_cols=76 Identities=11% Similarity=0.231 Sum_probs=59.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQ-----RGWRPNNLTFVG 550 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 550 (805)
..+++.++..+..+|+.+.+.+.+++.... |...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456778889999999999999999888743 677899999999999999999999988765 466666555444
Q ss_pred HHHH
Q 039715 551 VLSA 554 (805)
Q Consensus 551 ll~a 554 (805)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=0.84 Score=45.60 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeCCCCCcc
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAGDTSHAD 694 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~ 694 (805)
..++|-.+|.+.++++.|+++.+.++.+.|+++.-+--.|-+|.+.|.+..|.. .+..|+.-....|.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~------------DL~~fl~~~P~dp~ 250 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALS------------DLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH------------HHHHHHHhCCCchh
Confidence 457777889999999999999999999999999888889999999999999987 11123333445576
Q ss_pred HHHHHHHHHHHHH
Q 039715 695 MNIIRGMLEWLNM 707 (805)
Q Consensus 695 ~~~i~~~l~~l~~ 707 (805)
...|...+..+..
T Consensus 251 a~~ik~ql~~l~~ 263 (269)
T PRK10941 251 SEMIRAQIHSIEQ 263 (269)
T ss_pred HHHHHHHHHHHhh
Confidence 7666666666543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=88.79 E-value=15 Score=31.82 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=31.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVAN 574 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 574 (805)
-+..+...|+-++--+++.++.+. -+|++.....+..||.+.|+..++.+++.++-++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344555666666666666665542 2556666666666666666666666666665544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.15 E-value=1.4 Score=44.15 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=62.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc-
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRA- 594 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 594 (805)
..-|.++|++++|+..|.+... +.| |.+++..-..||.+...+..|..-...... + | ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---L--d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---L--D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---h--h----HHHHHHHHHHH
Confidence 4579999999999999999888 678 999999999999999998888776665542 1 1 2334555554
Q ss_pred ------CCHHHHHHHHHcC-CCCCCH
Q 039715 595 ------GHLDKAAKLIEGI-PFQPSV 613 (805)
Q Consensus 595 ------g~~~eA~~~~~~~-~~~p~~ 613 (805)
|.++||.+=++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 5566665555533 456764
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.03 E-value=7.3 Score=35.34 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=64.4
Q ss_pred HhcCCHHHHHHHhhhcCCCCHhHHHHH-----HHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH--HHHcCCCH
Q 039715 490 AKCGSITDARLVFDMMNDWNEVSWNAM-----ISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLS--ACSNGGLL 561 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~--a~~~~g~~ 561 (805)
++.+..++|+.-|..+.+.+--.|-.| .....+.|+...|+..|++.-...-.|-.. -...|-. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 345566666666666655433333332 344567777778888887776643334322 1112222 24566777
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 562 EQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 562 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
++...-.+.+... +-.-....-.+|.-.-.+.|++..|.++|..+
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 7766655544321 11112233445666666788888888888766
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=38 Score=34.38 Aligned_cols=74 Identities=12% Similarity=-0.027 Sum_probs=36.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS 556 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 556 (805)
+..+-..-+.++++.|+. .|...+-+..+.+. ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 444445555555565553 33333322222221 123455666666664 577777777653 345555444444443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=86.63 E-value=1.5 Score=31.30 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 618 ALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 618 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
.+.-++.+.|++++|.+..+.+++++|+|..+-...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345578899999999999999999999997765544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.60 E-value=26 Score=32.15 Aligned_cols=131 Identities=15% Similarity=0.059 Sum_probs=83.7
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHH
Q 039715 181 ACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRV 260 (805)
Q Consensus 181 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 260 (805)
..+.+.+++++..++..+++.+.+.|++.. +..+...++-+|.......+-..... ...
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~-------------------L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~ 76 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQ-------------------LHQLLQYHVIPDSKPLACQLLSLGNQ--YPP 76 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-------------------HHHHHhhcccCCcHHHHHHHHHhHcc--ChH
Confidence 344456777888888888888888887654 33445566777776666555443332 223
Q ss_pred HHHHHHHHHHh-CCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 039715 261 AKSAHGCALKT-CYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQA 337 (805)
Q Consensus 261 a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (805)
+.++=-.|.+. +. .+..++..+...|++-+|.+..+....-+...-..++.+-.+.++...=..+|+-....
T Consensus 77 ~~Ql~lDMLkRL~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 77 AYQLGLDMLKRLGT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHHHhhh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333333322 11 23456677888999999999998876666667777888888877776655555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.13 E-value=9.6 Score=38.40 Aligned_cols=154 Identities=12% Similarity=0.090 Sum_probs=107.3
Q ss_pred hcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHcCCCHHH
Q 039715 491 KCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGV----LSACSNGGLLEQ 563 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~ 563 (805)
-.|+.-+|...++++.+ .|..+|+--=.++..+|+.+.-...+++..-. ..||...|..+ .-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45788888888888874 48889999999999999999999999998864 45665433322 223467899999
Q ss_pred HHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCCCC--CCH-----HHHHHHHHHHHHcCCHHHHHHH
Q 039715 564 GEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQ--PSV-----MIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~--p~~-----~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
|.+.-++.. .+.| |.-...+....+.-.|+..|+.+++.+-.-. ... .-|..- -.+...+.++.|+++
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHH
Confidence 999877766 4555 3444556778888899999999999876411 110 112221 123445789999999
Q ss_pred HHHHh--ccCCCCcch
Q 039715 636 AQHIL--DFEPEDEAT 649 (805)
Q Consensus 636 ~~~~~--~~~p~~~~~ 649 (805)
|.+-+ +++.+|..+
T Consensus 270 yD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHHhhccchhh
Confidence 87543 466666643
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.12 E-value=36 Score=33.34 Aligned_cols=218 Identities=17% Similarity=0.246 Sum_probs=120.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh---cCCC--CChhhHHHHHHHHhccCCchhHHHHHHHHHH-----cCCCCcHhH
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLE---EQVP--ATEVTYSSVLRACASLAALEPGMQVHCLTVK-----ANYDMDVVV 481 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 481 (805)
.--||..+.+.|++++.++.+.+|.. ..+. -+..+.++++.-.+...+.+.-..+++.-++ .+-..--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 34466667777777777777776643 1111 2233556666655555555444444433221 111111223
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCC---------------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCH
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMNDW---------------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG-WRPNN 545 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~ 545 (805)
-+-|...|...|.+.+-.+++.++.+. -...|..-|..|..+.+-.+-..+|++.+... --|-+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 455667777777777777777666411 13356677888888888888888888876532 12333
Q ss_pred HHHHHHHHHHH-----cCCCHHHHHHHHHHHHHhcCCCCCh-----HHHHHHHHHHHhcCC----HHHHHHHHHcCCCC-
Q 039715 546 LTFVGVLSACS-----NGGLLEQGEAYFKSMVANYGIEPCI-----EHYTSMVSLLGRAGH----LDKAAKLIEGIPFQ- 610 (805)
Q Consensus 546 ~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~----~~eA~~~~~~~~~~- 610 (805)
....++.-|. +.|.+++|-.-|-+..+.|.-.-++ --|-.|..++.+.|- -+|| -|.+
T Consensus 228 -lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA------KPyKN 300 (440)
T KOG1464|consen 228 -LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA------KPYKN 300 (440)
T ss_pred -HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc------CCCCC
Confidence 3445555553 4677887776555555454332222 235566777777761 1222 1433
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 611 -PSVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 611 -p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
|.......|+.+|.. ++.. .|+++++
T Consensus 301 dPEIlAMTnlv~aYQ~-NdI~----eFE~Il~ 327 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQN-NDII----EFERILK 327 (440)
T ss_pred CHHHHHHHHHHHHHhc-ccHH----HHHHHHH
Confidence 445667888888754 4443 3444444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.02 E-value=1.7 Score=27.24 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN 544 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 544 (805)
.|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 466677777777777777777777776 4453
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.91 E-value=19 Score=33.64 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCCC------CHhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMNDW------NEVSWNAMISGYSMHGLSAEVLKVFDLMQ 537 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 537 (805)
.+..+.+.|.+.|+.+.|.+.|.++.+. -+..+-.+|......|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555666666666666666666665533 12244445555555555555555555444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=85.80 E-value=13 Score=37.91 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHhc--cC----CccchhhHHHHHHHhCC---CCchhhHHHHHHHHHhcCCH
Q 039715 138 FVEAVGLFSTLHREGHELNPFAFTAFLKVLVS--MG----WAELCPCVFACVYKLGH---DSNAFVGTALIDAFSVCGCV 208 (805)
Q Consensus 138 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~~ 208 (805)
+.+.+.+++.|.+.|++-+.++|.+..-.... .. ....+..+|+.|.+... .++-.++..|+.+ ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788889999999888888775544443 22 34467788999988764 3444566666543 33333
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChh--hHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCCCcHhHHHH
Q 039715 209 EFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNF--TFAFVLKACLGLDT--IRVAKSAHGCALKTCYEMDLYVAVA 282 (805)
Q Consensus 209 ~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~ 282 (805)
+ .+.+ ++...|+.+...|+..+.. ..+.+|..+..... ...+.++++.+.+.|.+.....|..
T Consensus 156 e---~l~~--------~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 E---ELAE--------RMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred H---HHHH--------HHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 3 3333 5566777777777765543 34444444333322 2355666667777766655444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.7 Score=28.84 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777765
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=85.56 E-value=53 Score=34.77 Aligned_cols=205 Identities=14% Similarity=0.169 Sum_probs=129.1
Q ss_pred cCCHHHHHHHhhhcCC----CCHhHHHHHHHHH-HhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHH
Q 039715 492 CGSITDARLVFDMMND----WNEVSWNAMISGY-SMHGLSAEVLKVFDLMQQRGWRPNN----LTFVGVLSACSNGGLLE 562 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 562 (805)
.|+-++|.+.+..+.. +.+..+-+|+.+- ....++.+|+++|++..- .-|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888999999888863 2455677776654 456789999999999876 45643 34444455678899999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHH-HHHHHHH---hcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039715 563 QGEAYFKSMVANYGIEPCIEHYT-SMVSLLG---RAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQH 638 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~---~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 638 (805)
++..+-.....+|.-.|=...|. -++..+. .....+.-..++..|+-..-..+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888888777776666443332 2233333 3334455556666775222245788888888899999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhc-----CChHHHhhcCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHHHHc
Q 039715 639 ILDFEPEDEATHVLLSNIYAMA-----RSWEKAASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKA 712 (805)
Q Consensus 639 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~ 712 (805)
++.+.++ ...-...+.+|... ...++|.+.... +..+..+|....+......+-..+.+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~-------------I~~~~L~~~Dr~Ll~AA~~va~~V~~~ 347 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQ-------------IDRDKLSERDRALLEAARSVARQVRRA 347 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhc-------------CChhhCChhhHHHHHHHHHHHHHHhcC
Confidence 9998743 33334445555433 345555551000 011244566555555555555555443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.25 E-value=1.5 Score=26.43 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
.|..+...+...|+++.|...+++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5677778888889999999999999888875
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.07 E-value=9.2 Score=38.28 Aligned_cols=79 Identities=11% Similarity=0.219 Sum_probs=60.7
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hcCCCCChHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA----NYGIEPCIEHY 584 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 584 (805)
..++..++..+...|+.+.+.+.++++... .| |...|..++.+|...|+...|+..|+.+.+ ..|+.|.....
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 346677888888889999999999999884 45 677888899999999999999888887764 44677776665
Q ss_pred HHHHHH
Q 039715 585 TSMVSL 590 (805)
Q Consensus 585 ~~li~~ 590 (805)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 544443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.90 E-value=1.1 Score=28.52 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHhcCCHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA 600 (805)
...|..|..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444444445455544444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.13 E-value=23 Score=36.20 Aligned_cols=63 Identities=14% Similarity=0.315 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HH-HHHHHHHHcCCC--HHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 039715 527 AEVLKVFDLMQQRGWRPNNL-TF-VGVLSACSNGGL--LEQGEAYFKSMVANYGIEPCIEHYTSMVSL 590 (805)
Q Consensus 527 ~~A~~l~~~m~~~g~~p~~~-t~-~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 590 (805)
+++...|+.+.+.|+..+.. -+ ..++..+..... +..+.++++.+.+. ++++...+|..++-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 45667778888877766433 33 333333322222 44677788777766 888888887766543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.85 E-value=53 Score=33.36 Aligned_cols=61 Identities=7% Similarity=-0.098 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 579 PCIEHYTSMVSLLGRAGHLDKAAKLI-EGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 579 p~~~~~~~li~~~~~~g~~~eA~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
++..+-..-+.++++.|.. +|...+ +.+. .++ .....+.++...|+- +|+..+.++++-.|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 3444444555555555552 333322 2222 222 122344445555553 45555555555555
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.22 E-value=72 Score=34.47 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=33.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCC
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS--NGGLLEQGEAYFKSMVANYGIE 578 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~ 578 (805)
+..-+-+.|-.++|...|..+... .+|+...|..++.--. .+-++.-++.+++.|...+|-+
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD 529 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence 444445555566666666666653 1234444444443211 1112667778888888877733
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.12 E-value=46 Score=32.11 Aligned_cols=24 Identities=0% Similarity=-0.143 Sum_probs=17.5
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCc
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
...+++.+|+.+|+++-...-+++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 456788899999988877555443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.07 E-value=14 Score=33.48 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHH---hcCCHHHHHHHHHcCC-CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 580 CIEHYTSMVSLLG---RAGHLDKAAKLIEGIP-FQPSVMIWRA-LLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 580 ~~~~~~~li~~~~---~~g~~~eA~~~~~~~~-~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
+..+.+.|++.+. +.+..+++..++..+. +.|....... -.+.+...|++.+|+++++.+.+-.|..+..-..++
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3445566665543 6789999999998772 4555433222 233466889999999999999998888887778888
Q ss_pred HHHHhcCC
Q 039715 655 NIYAMARS 662 (805)
Q Consensus 655 ~~~~~~g~ 662 (805)
..+...|+
T Consensus 86 ~CL~~~~D 93 (160)
T PF09613_consen 86 LCLYALGD 93 (160)
T ss_pred HHHHHcCC
Confidence 88877775
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.99 E-value=10 Score=35.43 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh------H
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL--TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI------E 582 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~ 582 (805)
..+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++..+..+..++........+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 367778889999999999999999999876666544 56778888888899999998888776432211122 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCC
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGIP 608 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~~ 608 (805)
.|..|. +...|++.+|-+.|-...
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 233332 335789999988887663
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.88 E-value=6 Score=37.14 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=52.3
Q ss_pred HhcCCHHHHHHHHHcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCChHH
Q 039715 592 GRAGHLDKAAKLIEGIPFQP--SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE----DEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 665 (805)
.+.|+ ++|.+.|-++.-.| +....-.-+..|....|.++++.++.+++++.+. |+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 55666666553222 3333444455666688999999999999986443 57889999999999999998
Q ss_pred Hh
Q 039715 666 AA 667 (805)
Q Consensus 666 a~ 667 (805)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 73
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.63 E-value=16 Score=39.94 Aligned_cols=144 Identities=13% Similarity=-0.002 Sum_probs=95.0
Q ss_pred hcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHH
Q 039715 491 KCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT-FVGVLSACSNGGLLEQGEAYFK 569 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~ 569 (805)
-.|+++.|..++..+++. .-+.++.-+..+|..++|++ +.+|..- |-.. .+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFela----l~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE---------LSTDPDQRFELA----LKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhh---------cCCChhhhhhhh----hhcCcHHHHHHHHH
Confidence 457888888877777632 34455666677787777776 3444432 3222 36788998888754
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 570 SMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 570 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
+. .+..-|..|.++....|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+....-+....|..
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A- 727 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA- 727 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH-
Confidence 43 255678899999999999999999987654 2667777777778776555555444444443322
Q ss_pred HHHHHHHHHhcCChHHHhh
Q 039715 650 HVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 650 ~~~l~~~~~~~g~~~~a~~ 668 (805)
-..|...|++++..+
T Consensus 728 ----F~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 728 ----FLAYFLSGDYEECLE 742 (794)
T ss_pred ----HHHHHHcCCHHHHHH
Confidence 235667777777776
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.54 E-value=2.1 Score=26.58 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
-.++.++...|+.++|...++++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345667778899999999999999888863
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=82.39 E-value=71 Score=33.79 Aligned_cols=155 Identities=12% Similarity=0.117 Sum_probs=88.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHH---HhCCChHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 039715 476 DMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGY---SMHGLSAEVLKVFDLMQQRGWRPNNLTFVGV- 551 (805)
Q Consensus 476 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l- 551 (805)
+-.+.+.-.+.+.+...|+.+.|.++.++..--=..+|......+ ...|... + .-...-|..-|.++
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r--------L-~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR--------L-DYRRPENRQFFLALF 107 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc--------c-CCccccchHHHHHHH
Confidence 445666667777788888888888777664311000010000000 0000000 0 00001133334433
Q ss_pred --HHHHHcCCCHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHH-hcCCHHHHHHHHHcCCC--C-------CCHHHHH
Q 039715 552 --LSACSNGGLLEQGEAYFKSMVANYGIEPC--IEHYTSMVSLLG-RAGHLDKAAKLIEGIPF--Q-------PSVMIWR 617 (805)
Q Consensus 552 --l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~-~~g~~~eA~~~~~~~~~--~-------p~~~~~~ 617 (805)
+..+.+.|-+..|.++.+-+. .++|+ +...-.+||.|+ |+++++--+++++.... . || ..+.
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S 183 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFS 183 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHH
Confidence 456788999999999988777 56664 555556678776 78888888888876432 1 22 2233
Q ss_pred HHHHHHHHcCCH---------------HHHHHHHHHHhccCC
Q 039715 618 ALLGACIIHNNV---------------EIGRLSAQHILDFEP 644 (805)
Q Consensus 618 ~l~~~~~~~g~~---------------~~a~~~~~~~~~~~p 644 (805)
.-+. +...++. +.|...+++++..-|
T Consensus 184 ~aLA-~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 184 IALA-YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHH-HHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 3333 3334444 899999999999888
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=82.23 E-value=61 Score=32.90 Aligned_cols=140 Identities=14% Similarity=0.023 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHH-HHCCCCCCh-----hhHHHHHHHhhCCCCHH---HHHHHH
Q 039715 195 GTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQM-RAVGFKPNN-----FTFAFVLKACLGLDTIR---VAKSAH 265 (805)
Q Consensus 195 ~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m-~~~g~~p~~-----~t~~~ll~~~~~~~~~~---~a~~~~ 265 (805)
||.=.+.+.+..++++|...++ +|.++++.- ......|+. .++..+..++...+..+ .+..+.
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~--------~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l 110 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQ--------RAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNAL 110 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHH--------HHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3433444444347777777776 667776552 111223332 24555666666666544 344555
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHh--CCChhHHHHHHHHHHHCCCC
Q 039715 266 GCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQ--TDLSIDAVELFCRMRQAFVA 340 (805)
Q Consensus 266 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~ 340 (805)
+.+.... +..+.++-.-+..+.+.++.+++.+.+.+|... ....+...+..+-+ ......|...+..+....+.
T Consensus 111 ~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~ 189 (278)
T PF08631_consen 111 RLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFK 189 (278)
T ss_pred HHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhC
Confidence 5554332 223344434455556677777777777777542 22335554444411 12334555555555544444
Q ss_pred CCh
Q 039715 341 PNQ 343 (805)
Q Consensus 341 p~~ 343 (805)
|..
T Consensus 190 ~~~ 192 (278)
T PF08631_consen 190 SSE 192 (278)
T ss_pred CCh
Confidence 443
|
It is also involved in sporulation []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.72 E-value=6.6 Score=39.17 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=74.8
Q ss_pred HcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC-C------CcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 039715 84 KKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE-R------NTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELN 156 (805)
Q Consensus 84 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 156 (805)
..|...++.+-..++..-....+++++...+-+.+. | +... .+.++-+. .-++.+++.++..=...|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 345556666777777777777888998887766653 2 2222 22233332 3367899999999899999999
Q ss_pred cchHHHHHHHHhccCCccchhhHHHHHHHhC
Q 039715 157 PFAFTAFLKVLVSMGWAELCPCVFACVYKLG 187 (805)
Q Consensus 157 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 187 (805)
.+|+..+++.+.+.+++..|.++...|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887777654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.48 E-value=12 Score=37.42 Aligned_cols=98 Identities=11% Similarity=0.178 Sum_probs=73.3
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039715 473 ANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP 543 (805)
Q Consensus 473 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 543 (805)
.|.+....+...++..-....+++++...+-++... ...+|-.++ -.=++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 345555566666777777778888888888776531 233333332 2336779999999889999999
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 039715 544 NNLTFVGVLSACSNGGLLEQGEAYFKSMVAN 574 (805)
Q Consensus 544 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 574 (805)
|..+++.+++.+.+.+++.+|.++...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999887777654
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.85 E-value=25 Score=28.71 Aligned_cols=87 Identities=11% Similarity=0.067 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 039715 359 LDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE 438 (805)
Q Consensus 359 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 438 (805)
.++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34555555555443311 223333334556788999999999999999999999887654 567777777777777776
Q ss_pred CCCCChhhHHH
Q 039715 439 QVPATEVTYSS 449 (805)
Q Consensus 439 g~~p~~~t~~~ 449 (805)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455445443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.69 E-value=2.5 Score=26.50 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
+|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466667777777777777777777766
|
... |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.44 E-value=15 Score=41.11 Aligned_cols=182 Identities=16% Similarity=0.247 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh----------hhHHHHHHHHhccCCchhHHHHHHHHHHc-C-CCCc
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE----------VTYSSVLRACASLAALEPGMQVHCLTVKA-N-YDMD 478 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~~~~ 478 (805)
+...|+-.|-...+++..+++.+.++.. ||. +.|...++---+-|+-++|....-.+++. | +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 4556777788888888888888888763 322 23444444444556667777665555443 3 233
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT---FVGVLSAC 555 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~ 555 (805)
++||-||++-+ .|- +-+.|...+..+.|++.|++.-+ +.|+..+ +..|+.+-
T Consensus 279 --------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 36777776533 111 22344555667788888988887 6776543 44444332
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
.+ .++...++ +. .--.|-.+++|.|.++.-.++++- ...+.+-...+|+.+|+++
T Consensus 334 G~--~Fens~El-q~------------IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLEL-QQ------------IGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHHH-HH------------HHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHH
Confidence 21 12222221 11 112345678899998877766532 2234445567899999999
Q ss_pred HHHHhccCCCC
Q 039715 636 AQHILDFEPED 646 (805)
Q Consensus 636 ~~~~~~~~p~~ 646 (805)
.++++++.|..
T Consensus 389 ae~mfKLk~P~ 399 (1226)
T KOG4279|consen 389 AEMMFKLKPPV 399 (1226)
T ss_pred HHHHhccCCce
Confidence 99999998854
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.15 E-value=1.2e+02 Score=34.95 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=82.3
Q ss_pred chHHHHHHHHH-hCCCchHHHHHhccCC----CCCcc-----hHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCCc
Q 039715 92 FATNVLLNVYV-KLNRLPDATKLFDEMP----ERNTI-----SFVTTIQGYTVSSQFVEAVGLFSTLHRE----GHELNP 157 (805)
Q Consensus 92 ~~~~~ll~~~~-~~g~~~~A~~~f~~~~----~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~ 157 (805)
.++-.+...|. ...+++.|+..+++.. +++.. .-..++..+.+.+... |...+++..+. +..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 45556666665 5667888888887642 12111 2234555666665555 88888876652 122223
Q ss_pred chHHHH-HHHHhccCCccchhhHHHHHHHhC---CCCchhhHHHHHHHHHh--cCCHHHHHHHHhhhccccHHHHHHHHH
Q 039715 158 FAFTAF-LKVLVSMGWAELCPCVFACVYKLG---HDSNAFVGTALIDAFSV--CGCVEFARKVFDGLFNDCFEEALNFFS 231 (805)
Q Consensus 158 ~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~~~~g~~~~A~~~~~ 231 (805)
..|..+ +..+...++...|.+.++.+...- ..+-+.+.-.++.+... .+..+++.+..+ ++.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~--------~~~~~~~ 210 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQ--------RAIAQAR 210 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHH--------HHHHHHh
Confidence 344443 333333367777777777666543 23334444444433332 233333333332 1111111
Q ss_pred HH--HHCCCCCChhhHHHHHHHhh--CCCCHHHHHHHHHHHH
Q 039715 232 QM--RAVGFKPNNFTFAFVLKACL--GLDTIRVAKSAHGCAL 269 (805)
Q Consensus 232 ~m--~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~ 269 (805)
.. ....-.|-...|..++..|+ ..|+++.+.+.+..+.
T Consensus 211 ~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 211 SLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 00011233445666666655 5566666665555443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.8 bits (148), Expect = 8e-10
Identities = 20/194 (10%), Positives = 56/194 (28%), Gaps = 8/194 (4%)
Query: 326 DAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALM 385
A L RQA +P + +LQ LD+ + L A
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 386 DVYAKCGRMENSVELF-------AESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE 438
++ + L + +N +++G+ + G + + + + +
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 439 QVPATEVTYSSVLRACASL-AALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITD 497
+ ++Y++ L+ + + + + L+ + +
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 498 ARLVFDMMNDWNEV 511
V + ++
Sbjct: 255 VHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 2e-08
Identities = 23/177 (12%), Positives = 54/177 (30%), Gaps = 7/177 (3%)
Query: 444 EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503
E + +L+ +L+ +A A + A +
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 504 MMND-------WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS 556
+ + +NA++ G++ G E++ V +++ G P+ L++ L
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 557 NGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSV 613
++ G++ ++S RA L K+ P +
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 1e-04
Identities = 17/139 (12%), Positives = 47/139 (33%), Gaps = 7/139 (5%)
Query: 226 ALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLD 285
A R P A +L+ G ++ V ++ G + +A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 286 LYTKSGEISNARRI---FEEMPKKDVIP----WSFMIARYAQTDLSIDAVELFCRMRQAF 338
+ ++ A + +K + ++ ++ +A+ + V + ++ A
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 339 VAPNQFTFVSVLQACATME 357
+ P+ ++ + LQ +
Sbjct: 196 LTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 3e-04
Identities = 20/178 (11%), Positives = 44/178 (24%), Gaps = 8/178 (4%)
Query: 55 NSHSYATSLQSCIQNDDLQTAMTI---HCQVLKKGNCLDLFATNVLLNVYVKLNRLPDAT 111
+ C+ D L A + H +K L L N ++ + + +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 112 KLFDEMPER----NTISFVTTIQGYTVSSQFVEAVG-LFSTLHREGHELNPFAFTAFLKV 166
+ + + + +S+ +Q Q + + +EG +L L
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245
Query: 167 LVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFE 224
+ V + L+ K+ L
Sbjct: 246 EDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 5e-06
Identities = 76/613 (12%), Positives = 167/613 (27%), Gaps = 195/613 (31%)
Query: 326 DAVELFCRMRQAFVAPNQFTFVS-VLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNAL 384
D + +F AFV V + ++ + E +D V L
Sbjct: 20 DILSVF---EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL----- 71
Query: 385 MDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE 444
+ E V+ F E R + + ++ ++ + +M+ +M EQ +
Sbjct: 72 ------LSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMT--RMYIEQR---D 117
Query: 445 VTYSSV----------------LRACASLAALEP--GMQVH--------CLTVKANYDMD 478
Y+ LR L L P + + + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 479 VVVANALIDMYAKCGSITDARLVFDMMND-WNEVSWNAMISGYSM--------------- 522
V + + V +M+ ++ N
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 523 ---------HGL-------SAEVLKVFD-----LMQQRGWRPNNLTFVGVLSAC-----S 556
+ L +A+ F+ L+ R F+ +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDH 293
Query: 557 NGGLLEQGEAYFKSMVANY-GIEP-------CIEH--YTSMVSLLGRAGH---------- 596
+ L E KS++ Y P + S+++ R G
Sbjct: 294 HSMTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 597 LDKAAKLIE------------------GIPFQPSVMI--------WRALLGACIIHNNVE 630
DK +IE + F PS I W ++ + ++ +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 631 IGRLSAQ-----------HILDFE-----PEDEATHVLLSNIYAMARSWEKAASKEPGLS 674
+ + S + E + A H + + Y + ++++ S +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD---SDDLIPP 467
Query: 675 WIEN---QGMVHYFRAGDTSHADMNIIRGM---LEWLNMKSRKAGYIPDLSAVLRDVRED 728
+++ + H+ + + M + R + +L K R + S + + +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 729 EK--ERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISK---IVQR-- 781
K + Y+ + K R++ + + I SK +++
Sbjct: 527 LKFYKPYICDNDPKYE--------------RLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 782 ----EIIIRDVHR 790
E I + H+
Sbjct: 573 MAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 63/444 (14%), Positives = 129/444 (29%), Gaps = 101/444 (22%)
Query: 3 RLFNYKTF--SCKQLTHQSKINAWLRGLSAQAALS-TQQCSNSTTTPITFSVSE------ 53
++K F + K + L+ L Q + T + +S+ + +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 54 FNSHSYATSLQSCIQNDDLQT-----AMTIHCQVLKKGNCL---DLFATNVLLNVYVKLN 105
S Y L + ++Q A + C++L L T+ L
Sbjct: 238 LKSKPYENCL---LVLLNVQNAKAWNAFNLSCKIL-----LTTRFKQVTDFLSAATTTHI 289
Query: 106 RLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGL-FSTLHREGHELNPFA---FT 161
L + E ++ ++ + L RE NP
Sbjct: 290 SLDHHSMTLTP-DEVKSL--------------LLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 162 AFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFND 221
++ ++ W +K H + + T + + +V E+ RK+FD L
Sbjct: 335 ESIRDGLAT-WDN---------WK--HVNCDKLTTIIESSLNVLEPAEY-RKMFDRLS-- 379
Query: 222 CFEEALN--------FFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCY 273
F + + + + + + + S L+
Sbjct: 380 VFPPSAHIPTILLSLIWFDV--IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 274 EMDLYVAV--ALLDLYTKSGEISNARRIFEEMPKKDVIP------WSFMIARYAQTDLSI 325
+++ A+ +++D Y I + D+IP + I + + I
Sbjct: 438 KLENEYALHRSIVDHY----------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKN---I 484
Query: 326 DAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDV-FVSNAL 384
+ E R F+ F F L+ + L L + F +
Sbjct: 485 EHPERMTLFRMVFL---DFRF---LEQKIRHDSTAWNASGSIL----NTLQQLKFYKPYI 534
Query: 385 MDVYAKCGRMENSVELFAESPKRN 408
D K R+ N++ F + N
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEEN 558
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 805 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.44 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.33 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.22 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.21 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.2 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.18 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.86 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.82 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.73 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.73 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.72 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.71 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.69 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.62 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.62 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.6 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.56 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.47 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.42 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.37 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.36 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.36 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.33 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.32 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.29 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.28 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.26 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.21 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.2 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.2 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.2 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.18 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.16 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.16 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.15 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.14 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.13 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.13 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.13 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.1 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.08 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.08 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.06 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.05 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.05 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.05 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.02 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.02 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.0 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.98 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.97 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.93 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.93 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.92 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.91 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.89 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.86 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.85 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.8 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.78 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.7 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.65 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.58 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.51 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.46 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.45 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.42 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.4 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.37 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.28 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.27 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.24 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.07 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.06 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.05 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.03 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.92 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.64 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.61 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.4 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.35 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.24 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.23 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.94 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.82 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.71 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.18 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.83 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.58 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.14 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.91 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.56 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.45 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.37 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.65 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.66 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.63 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.22 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.73 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.2 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.44 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.84 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.59 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.54 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.04 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.74 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.37 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.85 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 84.79 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.21 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.76 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.26 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.04 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 82.43 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.35 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.19 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=386.70 Aligned_cols=474 Identities=10% Similarity=-0.013 Sum_probs=379.0
Q ss_pred HHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhh
Q 039715 99 NVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPC 178 (805)
Q Consensus 99 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 178 (805)
..+.+.|.+..++..|+.++.+++..|+.++.+|.+.|++++|+.+|++|.. ..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~------------------------ 114 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--IT------------------------ 114 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH------------------------
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hC------------------------
Confidence 3456788888999999999989999999999999999999999999999975 22
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCH
Q 039715 179 VFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTI 258 (805)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 258 (805)
|+..+++.++.+|.+.|++++|..+|+++ .
T Consensus 115 -----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------~------------------------ 144 (597)
T 2xpi_A 115 -----------GNPNDAFWLAQVYCCTGDYARAKCLLTKE---------------D------------------------ 144 (597)
T ss_dssp -----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT---------------C------------------------
T ss_pred -----------CCchHHHHHHHHHHHcCcHHHHHHHHHHH---------------h------------------------
Confidence 34455566777777777777777666633 1
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC-------------------CcccHHHHHHHHH
Q 039715 259 RVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK-------------------DVIPWSFMIARYA 319 (805)
Q Consensus 259 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~ 319 (805)
..+++..+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.
T Consensus 145 -------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (597)
T 2xpi_A 145 -------------LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT 211 (597)
T ss_dssp -------------GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH
T ss_pred -------------ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH
Confidence 02456777888888888999999999999854333 3678999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCCchH--HHHH-HHHHHHhCCCccHHHHHHHHHHHHhcCChH
Q 039715 320 QTDLSIDAVELFCRMRQAFVAPNQF-TFVSVLQACATMEGLDL--GNQI-HSLVVRVGLLSDVFVSNALMDVYAKCGRME 395 (805)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 395 (805)
+.|++++|+++|++|.+.+ |+.. .+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|+++
T Consensus 212 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (597)
T 2xpi_A 212 NLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR 289 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHH
Confidence 9999999999999998853 4433 34444333322222111 1111 344444444555667888899999999999
Q ss_pred HHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHc
Q 039715 396 NSVELFAESPK--RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKA 473 (805)
Q Consensus 396 ~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 473 (805)
+|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|++++|.+++..+.+.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 99999999987 789999999999999999999999999999865 346778999999999999999999999999976
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 039715 474 NYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVG 550 (805)
Q Consensus 474 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 550 (805)
. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..
T Consensus 369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 446 (597)
T 2xpi_A 369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLF 446 (597)
T ss_dssp C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHH
Confidence 5 5678899999999999999999999999886 3478899999999999999999999999999853 347789999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC--HHHHHHHHH
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPS--VMIWRALLG 621 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~--~~~~~~l~~ 621 (805)
++.+|.+.|++++|.++|+++.+. ...+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 999999999999999999999864 2336889999999999999999999999977 45777 789999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 622 ACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 622 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|..+|++++|+..++++++++|+++.+|..++++|...|+|++|.+
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999987
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-39 Score=367.10 Aligned_cols=481 Identities=9% Similarity=-0.027 Sum_probs=302.5
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 039715 90 DLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVL 167 (805)
Q Consensus 90 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 167 (805)
++..++.++..|.+.|++++|..+|++|.. ||..+|+.++.+|.+.|++++|+.+|+++.. ..++..++..++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHH
Confidence 334444444444444444444444444421 3334444444444444444444444444432 133444444444444
Q ss_pred hccCCccchhhHHHHHH---------------HhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHH
Q 039715 168 VSMGWAELCPCVFACVY---------------KLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQ 232 (805)
Q Consensus 168 ~~~~~~~~a~~~~~~~~---------------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~ 232 (805)
.+.|++++|..+++.+. ..+.+.+..+|+.++.+|.+.|++++|.++|+ +
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---------------~ 225 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK---------------E 225 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH---------------H
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHH---------------H
Confidence 44444444444444211 11335568899999999999998887766666 4
Q ss_pred HHHCCCCCChh-hHHHHHHHhhCCCCHHH--HHHH-HHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC--C
Q 039715 233 MRAVGFKPNNF-TFAFVLKACLGLDTIRV--AKSA-HGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK--K 306 (805)
Q Consensus 233 m~~~g~~p~~~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~ 306 (805)
|.+. .|+.. .+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.++|+++.+ +
T Consensus 226 ~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 303 (597)
T 2xpi_A 226 ALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK 303 (597)
T ss_dssp HHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGG
T ss_pred HHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCc
Confidence 4443 24433 33333333332222211 1111 44445555555666778888899999999999999999987 6
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHH
Q 039715 307 DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMD 386 (805)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 386 (805)
+..+|+.++.+|.+.|++++|+.+|++|.+.+. .+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 888899999999999999999999999987643 366777788888888888888888888777654 445666666667
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhH
Q 039715 387 VYAKCGRMENSVELFAESP---KRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPG 463 (805)
Q Consensus 387 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 463 (805)
+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------ 437 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------------------------ 437 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------
Confidence 7776666666666666543 2345566666666666666666666666665432
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039715 464 MQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP 543 (805)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 543 (805)
+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.
T Consensus 438 ------------~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 438 ------------Q-------------------------------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp ------------T-------------------------------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred ------------c-------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 1 133344444444444455555555555554431 22
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHH
Q 039715 544 NNLTFVGVLSACSNGGLLEQGEAYFKSMVANY---GIEPC--IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIW 616 (805)
Q Consensus 544 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~ 616 (805)
+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 34455555555555555555555555554322 44565 567777777777777777777777765 2234 78899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 659 (805)
..++.+|...|++++|...++++++++|+++.++..|+++|..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-25 Score=238.26 Aligned_cols=371 Identities=10% Similarity=0.072 Sum_probs=250.7
Q ss_pred HhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChhHH
Q 039715 251 ACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK---KDVIPWSFMIARYAQTDLSIDA 327 (805)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 327 (805)
.+.+.|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 3445566666666666655553 22334444555555566666666655554432 2333455555555556666666
Q ss_pred HHHHHHHHHCCCCCC-hhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 039715 328 VELFCRMRQAFVAPN-QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK 406 (805)
Q Consensus 328 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 406 (805)
+..|+++.+. .|+ ..++..+..++...|++++|...+..+++.. +.+..
T Consensus 87 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~--------------------------- 136 (388)
T 1w3b_A 87 IEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYC--------------------------- 136 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTH---------------------------
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH---------------------------
Confidence 6655555542 232 2234445555555555555555555554433 22223
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHH
Q 039715 407 RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALI 486 (805)
Q Consensus 407 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 486 (805)
.|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+++.+ +.+...+..+.
T Consensus 137 ----~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 137 ----VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp ----HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34444445555555555555555554431 1123345555555555555555555555555543 33456677777
Q ss_pred HHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHH
Q 039715 487 DMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 487 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 562 (805)
..|...|++++|...|++.. ..+..+|..++.+|...|++++|++.|+++.+ ..|+ ..++..+..++...|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 88888888888888887665 23678889999999999999999999999998 4564 568888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039715 563 QGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHIL 640 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 640 (805)
+|...|+++.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +..+|..++..+...|++++|+..+++++
T Consensus 289 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 289 EAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999864 2346788999999999999999999999976 3445 57789999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCC
Q 039715 641 DFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 641 ~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
++.|+++.+|..++.+|...|+
T Consensus 367 ~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred hhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999988774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-25 Score=236.23 Aligned_cols=344 Identities=13% Similarity=0.106 Sum_probs=298.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 039715 314 MIARYAQTDLSIDAVELFCRMRQAFVAPNQ-FTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCG 392 (805)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 392 (805)
+...+.+.|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...++..++.. +.+..++..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677889999999999888774 4444 445555666788899999999999888875 667889999999999999
Q ss_pred ChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHHHHH
Q 039715 393 RMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQVHC 468 (805)
Q Consensus 393 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~ 468 (805)
++++|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|.+.+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999988642 35668999999999999999999999999875 45554 56677788889999999999999
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-
Q 039715 469 LTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN- 544 (805)
Q Consensus 469 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 544 (805)
.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|++..+ +.|+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCC
Confidence 999875 45678899999999999999999999999863 3677899999999999999999999999998 4564
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHHH
Q 039715 545 NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP--FQPSVMIWRALLG 621 (805)
Q Consensus 545 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~~ 621 (805)
..++..+..++...|++++|...|+++.+ +.| +...|..++..|.+.|++++|.+.++++. .+++..+|..++.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 66888999999999999999999999985 456 46789999999999999999999999772 2357789999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 622 ACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 622 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+...|++++|+..+++++++.|+++.++..++.+|...|++++|.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999987
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=250.60 Aligned_cols=184 Identities=10% Similarity=0.083 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCC---------chhHHHHHHHHHHcCCCCcHh
Q 039715 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAA---------LEPGMQVHCLTVKANYDMDVV 480 (805)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 480 (805)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||++||.+|+..+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45888999999999999999999999999999999999999999987664 577999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcC----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMN----DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS 556 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 556 (805)
+||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 56999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 039715 557 NGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRA 594 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 594 (805)
+.|++++|.++|++|.+. +..|+..+|+.+++.|.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999976 9999999999999998763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=249.73 Aligned_cols=211 Identities=12% Similarity=0.066 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcC
Q 039715 326 DAVELFCRMRQAFVAPNQ-FTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAES 404 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 404 (805)
.+..+.+++.+.++.+.. ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 344555666666554433 346677777777777777777777777777777777777777777766654321
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHH
Q 039715 405 PKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANA 484 (805)
Q Consensus 405 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 484 (805)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+||+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12345688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHhhhcC----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 039715 485 LIDMYAKCGSITDARLVFDMMN----DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNG 558 (805)
Q Consensus 485 li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 558 (805)
||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..+...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999996 5799999999999999999999999999999999999999999999988753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-22 Score=221.41 Aligned_cols=430 Identities=10% Similarity=-0.006 Sum_probs=295.5
Q ss_pred cccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHH
Q 039715 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRI 299 (805)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 299 (805)
.|++++|+..|+++.... |+...|..+..++...|+++.|.+.++.+++.. +.+..++..+..+|.+.|++++|...
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344445555555666654 678888888888888889999998888888875 44567788888888888888888888
Q ss_pred HhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCC--
Q 039715 300 FEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGL-- 374 (805)
Q Consensus 300 f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-- 374 (805)
|+++... +......++..+........+.+.+..+...+..|+...+..-...............+...+.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 8876432 23334444444444333333333333222222222222111111111111111111111111111110
Q ss_pred -------CccHHHHHHHHHHHHh---cCChHHHHHHHhcCCC----------------C-ChhhHHHHHHHHHHcCChHH
Q 039715 375 -------LSDVFVSNALMDVYAK---CGRMENSVELFAESPK----------------R-NHVTWNTMIVGYVQLGEVGK 427 (805)
Q Consensus 375 -------~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~~ 427 (805)
+.+...+..+...+.. .|++++|...|+++.+ + +...|..+...+...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 1224444444444544 7888888888876543 1 34578888899999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC-
Q 039715 428 AMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN- 506 (805)
Q Consensus 428 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 506 (805)
|+..|+++.+.. |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 256 A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 256 AHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999998865 336678888888999999999999999988765 4467788899999999999999999998875
Q ss_pred --CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----
Q 039715 507 --DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC---- 580 (805)
Q Consensus 507 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---- 580 (805)
..+...|..++..|...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+...-.++
T Consensus 333 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 411 (514)
T 2gw1_A 333 LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG 411 (514)
T ss_dssp TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSC
T ss_pred hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHH
Confidence 3367788999999999999999999999998852 234667888888899999999999999988764332333
Q ss_pred hHHHHHHHHHHHh---cCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 581 IEHYTSMVSLLGR---AGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 581 ~~~~~~li~~~~~---~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
...+..++..|.+ .|++++|.+.++++ ...| +..+|..++..+...|++++|...+++++++.|+++..+..+..
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3488899999999 99999999999876 2233 56788899999999999999999999999999988887776644
Q ss_pred H
Q 039715 656 I 656 (805)
Q Consensus 656 ~ 656 (805)
.
T Consensus 492 ~ 492 (514)
T 2gw1_A 492 A 492 (514)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-22 Score=217.17 Aligned_cols=322 Identities=10% Similarity=0.060 Sum_probs=216.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 039715 310 PWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYA 389 (805)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 389 (805)
.|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..+|.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 45555555555555555555555555431 2234455555555555555555555555555544 333455555666666
Q ss_pred hcCChHHHHHHHhcCCCC---Ch---hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhH
Q 039715 390 KCGRMENSVELFAESPKR---NH---VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPG 463 (805)
Q Consensus 390 ~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 463 (805)
+.|++++|...|+++.+. +. ..|..++..+...+ +..+...+...|++++|
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCHHHH
Confidence 666666666666554332 12 34444433311110 01111223334444444
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039715 464 MQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG 540 (805)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 540 (805)
...+..+.+.. +.+..++..++.+|.+.|++++|.+.|+++. ..+..+|..++..|...|++++|+..|+++.+
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 239 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK-- 239 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 44444444432 3355667777778888888888888887765 34678888888899999999999999999887
Q ss_pred CCCCHHH-HHHH------------HHHHHcCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHH
Q 039715 541 WRPNNLT-FVGV------------LSACSNGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAK 602 (805)
Q Consensus 541 ~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~ 602 (805)
..|+... +..+ ..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.+|.+.|++++|++
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4565443 3333 67889999999999999999854 454 4588999999999999999999
Q ss_pred HHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 603 LIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 603 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
.++++ ...| +...|..++.+|...|++++|+..++++++++|+++.++..++.+....++
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 99976 3344 678999999999999999999999999999999999999999977666554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=217.81 Aligned_cols=384 Identities=11% Similarity=-0.021 Sum_probs=309.1
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHhhCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 039715 277 LYVAVALLDLYTKSGEISNARRIFEEMPK--KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACA 354 (805)
Q Consensus 277 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 354 (805)
...+..+...|.+.|++++|...|+++.. |+...|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34566778889999999999999998864 677789999999999999999999999998864 335568888999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHH---------------------------------
Q 039715 355 TMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELF--------------------------------- 401 (805)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f--------------------------------- 401 (805)
..|++++|...++.+.+.+. ++......++..+.+......+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999998773 33333334444433322222222211
Q ss_pred -----hcCC---------CC-ChhhHHHHHHHHHH---cCChHHHHHHHHHHhh-----cCCCC--------ChhhHHHH
Q 039715 402 -----AESP---------KR-NHVTWNTMIVGYVQ---LGEVGKAMIMFSKMLE-----EQVPA--------TEVTYSSV 450 (805)
Q Consensus 402 -----~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~l 450 (805)
.... .+ +...|......+.. .|++++|+..|+++.. ....| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1110 01 13445555555554 8999999999999987 32222 23467778
Q ss_pred HHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChH
Q 039715 451 LRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSA 527 (805)
Q Consensus 451 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 527 (805)
...+...|++++|...+..+.+.... ..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999988644 88899999999999999999999998764 36778999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHc
Q 039715 528 EVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEG 606 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 606 (805)
+|+..|+++.+. .| +...+..+...+...|++++|..+++.+.+.. +.+...+..++..|.+.|++++|.+.+++
T Consensus 322 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999984 44 46688888899999999999999999998642 23567899999999999999999999987
Q ss_pred C----CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 607 I----PFQPS----VMIWRALLGACII---HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 607 ~----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+ |..++ ...|..++..+.. .|++++|+..+++++++.|+++.++..++.+|...|++++|.+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 6 32233 4489999999999 9999999999999999999999999999999999999999987
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-20 Score=202.18 Aligned_cols=286 Identities=12% Similarity=0.101 Sum_probs=206.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 039715 377 DVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRA 453 (805)
Q Consensus 377 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 453 (805)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344445555555555555555555554321 234455555555555555555555555555432 1223344455555
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcH---hHHH------------HHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDV---VVAN------------ALIDMYAKCGSITDARLVFDMMN---DWNEVSWNA 515 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~------------~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 515 (805)
+...|++++|...+..+.+.. +.+. ..+. .+...|.+.|++++|...|+++. ..+...|..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 555555555555555555433 1222 3333 33556899999999999999886 347889999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHH-------
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSM------- 587 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l------- 587 (805)
++..|...|++++|++.|+++.+.. +.+..++..+..++...|++++|...|+.+... .|+ ...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999852 345778999999999999999999999999854 454 4444444
Q ss_pred -----HHHHHhcCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 588 -----VSLLGRAGHLDKAAKLIEGI-PFQPS-----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 588 -----i~~~~~~g~~~eA~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
+..+.+.|++++|.+.++++ ...|+ ...|..++..+...|++++|+..+++++++.|+++.++..++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 88999999999999999877 23344 34788899999999999999999999999999999999999999
Q ss_pred HHhcCChHHHhh
Q 039715 657 YAMARSWEKAAS 668 (805)
Q Consensus 657 ~~~~g~~~~a~~ 668 (805)
|...|++++|.+
T Consensus 339 ~~~~~~~~~A~~ 350 (450)
T 2y4t_A 339 YLIEEMYDEAIQ 350 (450)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHhcCHHHHHH
Confidence 999999999988
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=204.94 Aligned_cols=257 Identities=10% Similarity=-0.002 Sum_probs=203.6
Q ss_pred CChHHHHHHHhcCCCC---C-------hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCch
Q 039715 392 GRMENSVELFAESPKR---N-------HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALE 461 (805)
Q Consensus 392 g~~~~A~~~f~~~~~~---~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 461 (805)
|++++|..+|+++.+. + ..+|..+...+...|++++|+..|++..+. .|+...+..+...+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 4667777777765442 2 224666777888899999999999999885 455778888888999999999
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
.|...+..+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999998876 45678899999999999999999999998763 3677899999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC----ChHHHHHHHHHHHhc----------CCHHHHHHHH
Q 039715 539 RGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP----CIEHYTSMVSLLGRA----------GHLDKAAKLI 604 (805)
Q Consensus 539 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~----------g~~~eA~~~~ 604 (805)
.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...+
T Consensus 373 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 373 KF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 53 23456788888899999999999999999875431111 223355566778888 9999999999
Q ss_pred HcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 605 EGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 605 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
+++ ...| +...|..++..|...|++++|...+++++++.|+++.....
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 876 2233 56789999999999999999999999999999988766543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-20 Score=207.09 Aligned_cols=411 Identities=10% Similarity=-0.001 Sum_probs=297.0
Q ss_pred hHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC---CCcccHHHHHHHHHh
Q 039715 244 TFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK---KDVIPWSFMIARYAQ 320 (805)
Q Consensus 244 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 320 (805)
.+......+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...+..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 34555566667777777777777777664 34566777777777777777777777776643 245567777777777
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhcCChHHHH
Q 039715 321 TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGL--LSDVFVSNALMDVYAKCGRMENSV 398 (805)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~ 398 (805)
.|++++|+..|+.+ . ..|+... ..+..+...+....+...++.+++... .+........+..|....+.+.+.
T Consensus 106 ~g~~~~A~~~~~~~-~--~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-S--LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHH-h--cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 78888887777533 2 1222211 112233333444566666666644310 011111233445566777888888
Q ss_pred HHHhcCCCCChh---hHHHHHHHHHH--------cCChHHHHHHHHHHhhcCCCCCh--------hhHHHHHHHHhccCC
Q 039715 399 ELFAESPKRNHV---TWNTMIVGYVQ--------LGEVGKAMIMFSKMLEEQVPATE--------VTYSSVLRACASLAA 459 (805)
Q Consensus 399 ~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~~~ 459 (805)
..+......+.. .+..+...+.. .|++++|+.+|+++.+.. |+. .++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhccc
Confidence 877776665443 33333333322 257899999999998753 442 246666777888999
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLM 536 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 536 (805)
+++|...+..+.+... +..++..+...|...|++++|.+.|+++. ..+..+|..++..|...|++++|+..|+++
T Consensus 259 ~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999998753 47888999999999999999999999886 346889999999999999999999999999
Q ss_pred HHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCC-
Q 039715 537 QQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQ- 610 (805)
Q Consensus 537 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~- 610 (805)
.+. .| +...+..+...+...|++++|..+++.+.+.. +.+...+..++..|.+.|++++|.+.++++ |..
T Consensus 337 ~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 337 QSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 985 45 45688889999999999999999999998652 235678999999999999999999999875 211
Q ss_pred ---CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 611 ---PSVMIWRALLGACIIH----------NNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 611 ---p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.....+..+...+... |++++|+..+++++++.|+++.++..++.+|...|++++|.+
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 1223455566777788 999999999999999999999999999999999999999987
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-16 Score=181.52 Aligned_cols=377 Identities=10% Similarity=0.074 Sum_probs=270.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhC--CCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCC
Q 039715 246 AFVLKACLGLDTIRVAKSAHGCALKTC--YEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDL 323 (805)
Q Consensus 246 ~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 323 (805)
....+++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+.....++...-+ ..-+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 334455556666666666666665221 112334444455544444 3344444444433212 3446667778888
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhc
Q 039715 324 SIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAE 403 (805)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 403 (805)
+++|..+|++... .......++ ...+++++|.++.+++ .+..+|..+..++.+.|++++|.+.|.+
T Consensus 1065 yEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 8888888888521 112222222 2667788888777754 3467888899999999999999999866
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHH
Q 039715 404 SPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVAN 483 (805)
Q Consensus 404 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 483 (805)
. .|...|..++..+.+.|++++|++.|...++.. ++....+.++.+|++.++++....+. + .++...+.
T Consensus 1131 A--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1131 A--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred c--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 4 567778888999999999999999998776654 33333345888888888877544332 1 33555666
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQ 563 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 563 (805)
.+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. .+..+|..+..+|...|.+..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 7889999999999999999885 48899999999999999999998877 345788888888988899888
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 039715 564 GEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIH--NNVEIGRLSAQHI 639 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 639 (805)
|..... ++..++..+..++..|.+.|.++||+++++.. ..+|. ...|.-|..+|.+. ++..++.+.|..-
T Consensus 1269 A~~cgl------~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1269 AQMCGL------HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHHHH------hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 887643 24456778889999999999999999999855 44443 45677777777665 4788888999988
Q ss_pred hccCC-----CCcchHHHHHHHHHhcCChHHHhh
Q 039715 640 LDFEP-----EDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 640 ~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+.| +++..|.-+..+|.+.|+|+.|..
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88887 788889999999999999999996
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-15 Score=172.32 Aligned_cols=201 Identities=13% Similarity=0.149 Sum_probs=119.2
Q ss_pred HHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCcc
Q 039715 95 NVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAE 174 (805)
Q Consensus 95 ~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 174 (805)
+..+..+++.|.++.+...-.+.. ...-|..|++.+.+. +++.|.++...+.+. .|....+..++..+.+.+.+.
T Consensus 486 ~Kvi~~l~~~gq~~ki~~Y~~~~~--~~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~--~~p~~d~~~ivd~f~~~~~iq 560 (1630)
T 1xi4_A 486 NKVIQCFAETGQVQKIVLYAKKVG--YTPDWIFLLRNVMRI-SPDQGQQFAQMLVQD--EEPLADITQIVDVFMEYNLIQ 560 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHhccC--CCccHHHHHHHHhhc-ChHHHHHHHHHHhcC--CCCccCHHHHHHHHHhcCcHH
Confidence 344444555555555444433321 133478888888755 588888877777664 334556788888888888888
Q ss_pred chhhHHHHHHHhCCCCchhh-----------------------------HHHHHHHHHhcCCHHHHHHHHhhh-------
Q 039715 175 LCPCVFACVYKLGHDSNAFV-----------------------------GTALIDAFSVCGCVEFARKVFDGL------- 218 (805)
Q Consensus 175 ~a~~~~~~~~~~g~~~~~~~-----------------------------~~~li~~y~~~g~~~~A~~~~~~~------- 218 (805)
++..++-.+.+.+-+.+... +..+...+-+.|-+..|.+.+..+
T Consensus 561 ~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~ 640 (1630)
T 1xi4_A 561 QCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAV 640 (1630)
T ss_pred HHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHh
Confidence 88888877777664322222 344456666677777777777654
Q ss_pred ---------------ccccHHHHHHHHHHHHHCCCCCChhhHH-------------HHHHHhhCCCCHHHHHHHHHHHHH
Q 039715 219 ---------------FNDCFEEALNFFSQMRAVGFKPNNFTFA-------------FVLKACLGLDTIRVAKSAHGCALK 270 (805)
Q Consensus 219 ---------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------------~ll~~~~~~~~~~~a~~~~~~~~~ 270 (805)
..=..+.+++.+++|...+++-|..... .++..+-+.+.++.-.-.++.++
T Consensus 641 ~~~~~~~~~~l~~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv- 719 (1630)
T 1xi4_A 641 VHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIV- 719 (1630)
T ss_pred hccCcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhc-
Confidence 2224567777777777655443322222 22222222222222222222221
Q ss_pred hCCCCcHhHHHHHHHHHHcCCChHHHHHHHhh
Q 039715 271 TCYEMDLYVAVALLDLYTKSGEISNARRIFEE 302 (805)
Q Consensus 271 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 302 (805)
.+..|+.+....|.+.++.|++.+.+++.++
T Consensus 720 -~~s~d~~vhfkyi~aa~~~~q~~everi~re 750 (1630)
T 1xi4_A 720 -NFSQDPDVHFKYIQAACKTGQIKEVERICRE 750 (1630)
T ss_pred -cccCChHHHHHHHHHHHHhCCchhhhHHhcc
Confidence 1345777888888888888888887777655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-18 Score=178.32 Aligned_cols=323 Identities=11% Similarity=0.050 Sum_probs=226.9
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 039715 308 VIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDV 387 (805)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 387 (805)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3456667777788888888888888777642 2245566666666666777777777776666654 3344555556666
Q ss_pred HHhcCChHHHHHHHhcCCCCCh------hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCch
Q 039715 388 YAKCGRMENSVELFAESPKRNH------VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALE 461 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 461 (805)
|.+.|++++|...|++..+.++ ..|..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666655433211 22222210000 000111234556666777
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
+|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777776666654 34567788888888889999999988887763 3677888899999999999999999999988
Q ss_pred cCCCCCHH-HHH------------HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-h----HHHHHHHHHHHhcCCHHHH
Q 039715 539 RGWRPNNL-TFV------------GVLSACSNGGLLEQGEAYFKSMVANYGIEPC-I----EHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 539 ~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~----~~~~~li~~~~~~g~~~eA 600 (805)
. .|+.. .+. .+...+...|++++|...++.+.+. .|+ . ..+..++..|.+.|++++|
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 4 45433 222 2355688899999999999999865 343 2 3456688999999999999
Q ss_pred HHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 601 AKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 601 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
.+.+++. ...| +...|..++..+...|++++|+..++++++++|+++..+..|+.++...+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999876 2234 67899999999999999999999999999999999999999998877654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-17 Score=177.27 Aligned_cols=323 Identities=12% Similarity=0.063 Sum_probs=233.4
Q ss_pred hhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHH
Q 039715 343 QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGY 419 (805)
Q Consensus 343 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 419 (805)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3455566666777777777777777777654 34556666677777777777777777766432 2455667777777
Q ss_pred HHcCChHHHHHHHHHHhhcCCCC---Chh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 039715 420 VQLGEVGKAMIMFSKMLEEQVPA---TEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSI 495 (805)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 495 (805)
...|++++|+..|+++.+. .| +.. .+..+.... ....+..+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCH
Confidence 7777777777777776653 33 211 111111100 011233456789999999
Q ss_pred HHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 039715 496 TDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 496 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
++|.+.|+++. ..+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|...|+.+
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999876 347889999999999999999999999999984 45 5668888999999999999999999999
Q ss_pred HHhcCCCCC-hHHHH------------HHHHHHHhcCCHHHHHHHHHcC-CCCCC-H----HHHHHHHHHHHHcCCHHHH
Q 039715 572 VANYGIEPC-IEHYT------------SMVSLLGRAGHLDKAAKLIEGI-PFQPS-V----MIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 572 ~~~~~~~p~-~~~~~------------~li~~~~~~g~~~eA~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a 632 (805)
.+. .|+ ...+. .++..+.+.|++++|.+.++++ ...|+ . ..|..+...+...|++++|
T Consensus 215 ~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 854 343 23222 3367799999999999999876 22333 3 2355678889999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHHHH
Q 039715 633 RLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRK 711 (805)
Q Consensus 633 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 711 (805)
+..+++++++.|+++..+..++.+|...|++++|.+ .|...-...|...++...|..+...+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~---------------~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ---------------DYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH---------------HHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH---------------HHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 1111123346656666666666655543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=174.80 Aligned_cols=285 Identities=10% Similarity=0.010 Sum_probs=222.2
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHH
Q 039715 375 LSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVL 451 (805)
Q Consensus 375 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 451 (805)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34455566667777777777777777766542 244556667777777888888888888877643 23445666777
Q ss_pred HHHhccC-CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChH
Q 039715 452 RACASLA-ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSA 527 (805)
Q Consensus 452 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 527 (805)
..+...| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7788888888777665 44567788889999999999999999988763 35677888999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-------CCChHHHHHHHHHHHhcCCHHH
Q 039715 528 EVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI-------EPCIEHYTSMVSLLGRAGHLDK 599 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-------~p~~~~~~~li~~~~~~g~~~e 599 (805)
+|++.|+++.+. .| +...+..+...+...|++++|..+++.+.+...- ......+..++..|.+.|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999884 45 4567888888899999999999999998864311 2346789999999999999999
Q ss_pred HHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH-HhcCCh
Q 039715 600 AAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY-AMARSW 663 (805)
Q Consensus 600 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 663 (805)
|.+.++++ ... .+...|..+...+...|++++|...++++++++|+++..+..++.+| ...|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999876 222 35678999999999999999999999999999999999999999998 455544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=174.80 Aligned_cols=346 Identities=14% Similarity=0.100 Sum_probs=170.1
Q ss_pred HhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHH
Q 039715 102 VKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFA 181 (805)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 181 (805)
-+.|++++|.+.+++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37888999999999997664 8999999999999999999999763 688899999999999999999999888
Q ss_pred HHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHH
Q 039715 182 CVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVA 261 (805)
Q Consensus 182 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 261 (805)
..++. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|..+...|...|.++.|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------~pn~~a~~~IGd~~~~~g~yeeA 141 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN----------------------GPNNAHIQQVGDRCYDEKMYDAA 141 (449)
T ss_dssp -------------------------CHHHHTTTTT----------------------CC----------------CTTTH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------------------CCcHHHHHHHHHHHHHcCCHHHH
Confidence 88875 4668889999999999999998887775 47778999999999999999999
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 039715 262 KSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAP 341 (805)
Q Consensus 262 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 341 (805)
+..|..+ ..|..|+..+.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+. +.|
T Consensus 142 ~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a 207 (449)
T 1b89_A 142 KLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA 207 (449)
T ss_dssp HHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH
T ss_pred HHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH
Confidence 9999976 46889999999999999999999998 378899999999999999999966555422 334
Q ss_pred ChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc--CChHHHHHHHhcCCC--------CChhh
Q 039715 342 NQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKC--GRMENSVELFAESPK--------RNHVT 411 (805)
Q Consensus 342 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~~~~--------~~~~~ 411 (805)
+ -...++..|.+.|.++++..+++..+... +-...+++-|.-.|++- +++.+.++.|..-.. .+...
T Consensus 208 d--~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp H--HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred h--hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3 35578889999999999999999988655 55577888888888774 567788888875433 25678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK 491 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 491 (805)
|..+...|.+.++++.|... |.+. +|+...-..+.....+..+.+.-.+.....+.. .+...|.|+.....
T Consensus 285 w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~ 355 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSP 355 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGG
T ss_pred HHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 99999999999999999874 4432 344343444444455555555444444433322 12335555555555
Q ss_pred cCCHHHHHHHhhhc
Q 039715 492 CGSITDARLVFDMM 505 (805)
Q Consensus 492 ~g~~~~A~~~~~~~ 505 (805)
.=+...+.++|++.
T Consensus 356 ~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 356 RLDHTRAVNYFSKV 369 (449)
T ss_dssp GCCHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHc
Confidence 55555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-15 Score=169.90 Aligned_cols=365 Identities=9% Similarity=-0.020 Sum_probs=278.5
Q ss_pred cHhHHHHHHHHHHc----CCChHHHHHHHhhCCCC-CcccHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHH
Q 039715 276 DLYVAVALLDLYTK----SGEISNARRIFEEMPKK-DVIPWSFMIARYAQ----TDLSIDAVELFCRMRQAFVAPNQFTF 346 (805)
Q Consensus 276 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 346 (805)
+......|...|.. .+++++|...|++..+. +...+..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44555556666666 67777777777765433 45566777777777 777888888888777654 45555
Q ss_pred HHHHHHHhc----cCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhhHHHHHH
Q 039715 347 VSVLQACAT----MEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAK----CGRMENSVELFAESPK-RNHVTWNTMIV 417 (805)
Q Consensus 347 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 417 (805)
..+...+.. .+++++|...++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666665 677888888888887765 45566777777776 6788888888876443 46677888888
Q ss_pred HHHH----cCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhc----cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 039715 418 GYVQ----LGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACAS----LAALEPGMQVHCLTVKANYDMDVVVANALIDMY 489 (805)
Q Consensus 418 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 489 (805)
.|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.+ +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8887 788888988888887754 44566666666664 678888888888888765 456777788888
Q ss_pred Hh----cCCHHHHHHHhhhcCCC-CHhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 039715 490 AK----CGSITDARLVFDMMNDW-NEVSWNAMISGYSMH-----GLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGG 559 (805)
Q Consensus 490 ~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 559 (805)
.. .++.++|.+.|++..+. +...+..+...|... +++++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 88 89999999999988654 677888888888887 89999999999999865 4456667777776656
Q ss_pred ---CHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCC
Q 039715 560 ---LLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGR----AGHLDKAAKLIEGIPFQPSVMIWRALLGACII----HNN 628 (805)
Q Consensus 560 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 628 (805)
+.++|.++|++..+. .++..+..|..+|.. .+++++|.+++++.-...++..+..|...|.. .++
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 789999999998854 467888899999998 89999999999977434567889999999988 899
Q ss_pred HHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 039715 629 VEIGRLSAQHILDFEPE---DEATHVLLSNIYAM 659 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 659 (805)
.++|...++++++..|+ ++.+...|+.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999854 66666667665443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=165.80 Aligned_cols=256 Identities=12% Similarity=0.046 Sum_probs=223.0
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHH
Q 039715 407 RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALI 486 (805)
Q Consensus 407 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 486 (805)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456678888999999999999999999998764 3344566778888899999999999999999875 45678899999
Q ss_pred HHHHhcC-CHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 039715 487 DMYAKCG-SITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 487 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 562 (805)
..|...| ++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 367789999999999999999999999999853 224567777888999999999
Q ss_pred HHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC-----------CCCCHHHHHHHHHHHHHcCCHH
Q 039715 563 QGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP-----------FQPSVMIWRALLGACIIHNNVE 630 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g~~~ 630 (805)
+|..+++.+.+ ..| +...+..++..|.+.|++++|.+.++++- ...+..+|..++..+...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999884 445 56889999999999999999999998651 0234578999999999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 631 IGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 631 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|+..+++++++.|+++..+..++.+|...|++++|.+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999988
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=173.95 Aligned_cols=286 Identities=12% Similarity=0.116 Sum_probs=120.3
Q ss_pred HcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHH
Q 039715 288 TKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHS 367 (805)
Q Consensus 288 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 367 (805)
-+.|++++|.+.++++..+ .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999655 49999999999999999999999763 578899999999999999999999888
Q ss_pred HHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhH
Q 039715 368 LVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTY 447 (805)
Q Consensus 368 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 447 (805)
...+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 45578899999999999999999988864 67779999999999999999999999977 367
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChH
Q 039715 448 SSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSA 527 (805)
Q Consensus 448 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 527 (805)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 78888888888888888877776 267778888888888888888877766654 44444456777788888888
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCC------ChHHHHHHHHHHHhcCCHH
Q 039715 528 EVLKVFDLMQQRGWRPN-NLTFVGVLSACS--NGGLLEQGEAYFKSMVANYGIEP------CIEHYTSMVSLLGRAGHLD 598 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~ 598 (805)
+|+.+++..+. ..+. ...|+.+.-+++ +.+++.+.++.|.. +-+++| +..+|..++.+|...|.++
T Consensus 225 Eai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 225 ELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 88888887775 3332 334444444443 34455555554432 224444 3566777788888888888
Q ss_pred HHHHHHHcC
Q 039715 599 KAAKLIEGI 607 (805)
Q Consensus 599 eA~~~~~~~ 607 (805)
.|...+-+-
T Consensus 300 ~A~~tm~~h 308 (449)
T 1b89_A 300 NAIITMMNH 308 (449)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 777665443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-17 Score=172.45 Aligned_cols=273 Identities=11% Similarity=0.052 Sum_probs=217.2
Q ss_pred HHhcCChHHHHH-HHhcCCC---C----ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCC
Q 039715 388 YAKCGRMENSVE-LFAESPK---R----NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAA 459 (805)
Q Consensus 388 y~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 459 (805)
|.-.|++++|.. .|++... . +...|..+...|.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888887 7775432 1 34568888889999999999999999988753 3355577888888899999
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHH----------------HHHHHH
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWN----------------AMISGY 520 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~----------------~li~~~ 520 (805)
+++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++... +...+. .+...+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999888876 457788889999999999999999999887632 222222 233334
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRPN---NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH 596 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 596 (805)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+... .| +...+..++..|.+.|+
T Consensus 193 -~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred -hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCC
Confidence 889999999999999985 454 678889999999999999999999999854 45 57889999999999999
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhcCCh
Q 039715 597 LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPED-----------EATHVLLSNIYAMARSW 663 (805)
Q Consensus 597 ~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~ 663 (805)
+++|.+.++++ ...| +...|..++..|...|++++|+..+++++++.|++ +.++..++.+|...|++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 99999999976 2234 57889999999999999999999999999999988 78999999999999999
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
++|.+
T Consensus 347 ~~A~~ 351 (368)
T 1fch_A 347 DAYGA 351 (368)
T ss_dssp GGHHH
T ss_pred HhHHH
Confidence 99976
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-14 Score=163.31 Aligned_cols=201 Identities=9% Similarity=-0.035 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-------cCCHH-------HHHHHhhhcCC---C-CHhHHHHHHHHHHhC
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAK-------CGSIT-------DARLVFDMMND---W-NEVSWNAMISGYSMH 523 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 523 (805)
.+..+++.++... +.+..+|..++..+.+ .|+++ +|.++|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4556677777653 4466777777777765 67766 78888887763 2 567788888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHH-HHhcCCHHH
Q 039715 524 GLSAEVLKVFDLMQQRGWRPNN--LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSL-LGRAGHLDK 599 (805)
Q Consensus 524 g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~e 599 (805)
|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|+.+|++..+ ..|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhH
Confidence 888888888888887 45653 3677777777777888888888888773 3332 3333333222 335788888
Q ss_pred HHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc----hHHHHHHHHHhcCChHHHhh
Q 039715 600 AAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA----THVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 600 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~ 668 (805)
|..+|++. ...| +...|..++..+...|+.++|..+++++++..|.++. .+..........|+.+++.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888754 2223 4677888888888888888888888888887766554 56566666777777776644
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-15 Score=165.37 Aligned_cols=397 Identities=7% Similarity=-0.007 Sum_probs=285.3
Q ss_pred ChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC--CCcccHHHHHHH-
Q 039715 241 NNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK--KDVIPWSFMIAR- 317 (805)
Q Consensus 241 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~- 317 (805)
|...|..++.. .+.|+++.|+.+++.+++.. +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45567777764 66789999999999998763 55677889999999999999999999998765 455556666643
Q ss_pred HHhCCChhHHHH----HHHHHHH-CCCCCC-hhHHHHHHHHHhc---------cCCchHHHHHHHHHHHhCCCccHHHHH
Q 039715 318 YAQTDLSIDAVE----LFCRMRQ-AFVAPN-QFTFVSVLQACAT---------MEGLDLGNQIHSLVVRVGLLSDVFVSN 382 (805)
Q Consensus 318 ~~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 382 (805)
....|+.++|.+ +|++... .|..|+ ...|...+..... .|+++.|..+|+..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 235677777665 6666654 355544 3455555554433 678889999999888732111123343
Q ss_pred HHHHHH-------------HhcCChHHHHHHHhc-------CC------CCC--------hhhHHHHHHHHHHc----CC
Q 039715 383 ALMDVY-------------AKCGRMENSVELFAE-------SP------KRN--------HVTWNTMIVGYVQL----GE 424 (805)
Q Consensus 383 ~Li~~y-------------~~~g~~~~A~~~f~~-------~~------~~~--------~~~~~~li~~~~~~----g~ 424 (805)
...... .+.++++.|..++.. +. .|+ ...|...+.....+ ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 332211 124456777766553 11 111 24676666443332 23
Q ss_pred h----HHHHHHHHHHhhcCCCCChhhHHHHHHHHhc-------cCCch-------hHHHHHHHHHHcCCCCcHhHHHHHH
Q 039715 425 V----GKAMIMFSKMLEEQVPATEVTYSSVLRACAS-------LAALE-------PGMQVHCLTVKANYDMDVVVANALI 486 (805)
Q Consensus 425 ~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li 486 (805)
. ++|+.+|++..... +-+...|......+.+ .|+++ +|..+++..++.-.+.+..++..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2 47888999988752 3345566666666654 78887 8999999998733355788999999
Q ss_pred HHHHhcCCHHHHHHHhhhcCC--C-CH-hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHcCCC
Q 039715 487 DMYAKCGSITDARLVFDMMND--W-NE-VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSA-CSNGGL 560 (805)
Q Consensus 487 ~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~ 560 (805)
..+.+.|++++|.++|+++.+ + +. ..|..++..+.+.|+.++|.++|++..+. .|+ ...+...... +...|+
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCC
Confidence 999999999999999998863 3 33 58999999999999999999999999984 443 3334333222 335899
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 039715 561 LEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS--VMIWRALLGACIIHNNVEIGR 633 (805)
Q Consensus 561 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~ 633 (805)
.++|..+|+...+.. | +...|..+++.+.+.|+.++|..+|++. |..|+ ..+|...+.....+|+.+.+.
T Consensus 407 ~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 407 KSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred hhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998653 5 5788999999999999999999999976 33343 458999999999999999999
Q ss_pred HHHHHHhccCCC
Q 039715 634 LSAQHILDFEPE 645 (805)
Q Consensus 634 ~~~~~~~~~~p~ 645 (805)
.+.+++.+..|+
T Consensus 484 ~~~~r~~~~~p~ 495 (530)
T 2ooe_A 484 KVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHCch
Confidence 999999999984
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-14 Score=160.58 Aligned_cols=342 Identities=14% Similarity=0.037 Sum_probs=290.0
Q ss_pred CCcccHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCcc
Q 039715 306 KDVIPWSFMIARYAQ----TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACAT----MEGLDLGNQIHSLVVRVGLLSD 377 (805)
Q Consensus 306 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 377 (805)
.++..+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466677778888888 899999999999998864 56677778888877 899999999999999876 5
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHhcCCCC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCCChhhHH
Q 039715 378 VFVSNALMDVYAK----CGRMENSVELFAESPKR-NHVTWNTMIVGYVQ----LGEVGKAMIMFSKMLEEQVPATEVTYS 448 (805)
Q Consensus 378 ~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 448 (805)
...+..|..+|.. .+++++|...|++..+. +...+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6677789999998 88999999999886543 67788889999988 789999999999998864 566777
Q ss_pred HHHHHHhc----cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHhhhcCC-CCHhHHHHHHHH
Q 039715 449 SVLRACAS----LAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK----CGSITDARLVFDMMND-WNEVSWNAMISG 519 (805)
Q Consensus 449 ~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 519 (805)
.+...+.. .++.++|...+....+.+ +...+..|..+|.. .+++++|.+.|++..+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777 889999999999999876 56778889999987 8999999999998764 477788888888
Q ss_pred HHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 039715 520 YSM----HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNG-----GLLEQGEAYFKSMVANYGIEPCIEHYTSMVSL 590 (805)
Q Consensus 520 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 590 (805)
|.. .+++++|+..|++..+.| +...+..+...+... ++.++|..+|++..+. -+...+..|..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 888 899999999999998864 455667777777776 8999999999998854 355678888899
Q ss_pred HHhcC---CHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----
Q 039715 591 LGRAG---HLDKAAKLIEGIPFQPSVMIWRALLGACII----HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM---- 659 (805)
Q Consensus 591 ~~~~g---~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 659 (805)
|.+.| ++++|.++|++.-...++..+..|...|.. .++.++|+..++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88867 889999999977434678899999999998 899999999999999864 68899999999999
Q ss_pred cCChHHHhh
Q 039715 660 ARSWEKAAS 668 (805)
Q Consensus 660 ~g~~~~a~~ 668 (805)
.+++++|.+
T Consensus 416 ~~d~~~A~~ 424 (490)
T 2xm6_A 416 ERDYVQAWA 424 (490)
T ss_dssp CCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 899999977
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=170.11 Aligned_cols=254 Identities=10% Similarity=0.024 Sum_probs=211.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHH
Q 039715 408 NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALID 487 (805)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 487 (805)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568899999999999999999999998764 3456688889999999999999999999998875 456788999999
Q ss_pred HHHhcCCHHHHHHHhhhcCCCC---H----------hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 039715 488 MYAKCGSITDARLVFDMMNDWN---E----------VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP---NNLTFVGV 551 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~~~~---~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~l 551 (805)
.|.+.|++++|.+.|+++.+.+ . ..+..+...|...|++++|+..|+++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 9999999999999999886432 2 23344588999999999999999999995 45 47788999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 628 (805)
...+...|++++|..+|+++.+. .| +...|..++.+|.+.|++++|++.++++ ...| +..+|..++.+|...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 99999999999999999999854 34 5789999999999999999999999876 2344 57899999999999999
Q ss_pred HHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCChHHHhh
Q 039715 629 VEIGRLSAQHILDFEPE------------DEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++|+..+++++++.|+ +...+..|+.++...|+.+.+.+
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999999999887 36788999999999999999877
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-16 Score=166.73 Aligned_cols=266 Identities=11% Similarity=0.007 Sum_probs=144.7
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCC
Q 039715 348 SVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP---KRNHVTWNTMIVGYVQLGE 424 (805)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 424 (805)
.+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+...|...|+
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 147 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 147 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 33333334444444444444443332 2334445555555666666666666655432 2355667777777777888
Q ss_pred hHHHHHHHHHHhhcCCCCChhh-HHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 425 VGKAMIMFSKMLEEQVPATEVT-YSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
+++|+..|+++.... |+... +..+... . +.......+..+...+ ..|++++|...|+
T Consensus 148 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~------------~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~ 205 (368)
T 1fch_A 148 QRQACEILRDWLRYT--PAYAHLVTPAEEG-------A------------GGAGLGPSKRILGSLL-SDSLFLEVKELFL 205 (368)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------h------------hhhcccHHHHHHHHHh-hcccHHHHHHHHH
Confidence 888888888777643 22221 1100000 0 0000000111122222 5566666666666
Q ss_pred hcCC--C---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Q 039715 504 MMND--W---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI 577 (805)
Q Consensus 504 ~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 577 (805)
++.+ | +...|..++..|...|++++|+..|+++.+. .| +..++..+...+...|++++|...|+++.+.
T Consensus 206 ~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 280 (368)
T 1fch_A 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--- 280 (368)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 5541 1 3556666666666666666666666666663 33 3446666666666667777777776666643
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 578 EP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQ---------PSVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 578 ~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~---------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
.| +...+..++.+|.+.|++++|.+.++++ |.. ....+|..++.+|...|+.++|..++++.++
T Consensus 281 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 23 3556666677777777777777666644 101 0156777777777777777777777665544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-15 Score=154.02 Aligned_cols=267 Identities=8% Similarity=-0.043 Sum_probs=209.1
Q ss_pred HHhcCChHHHHHHHhcCCCCCh----hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhH
Q 039715 388 YAKCGRMENSVELFAESPKRNH----VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPG 463 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 463 (805)
....|+++.|+..++.....++ .....+..+|...|++++|+..++.. -.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4456788888888777655432 23455677888888888888765441 345566777777778888888888
Q ss_pred HHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 039715 464 MQVHCLTVKANY-DMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR 542 (805)
Q Consensus 464 ~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 542 (805)
.+.++.+...+. +.+...+..+..+|...|++++|++.|++ ..+...+..++..|.+.|++++|++.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 888888877664 44667778888999999999999999998 568889999999999999999999999999985 5
Q ss_pred CCHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHH
Q 039715 543 PNNLTF---VGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWR 617 (805)
Q Consensus 543 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 617 (805)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.++.+|.+.|++++|.+.++++ ...| ++.+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 765422 12334445669999999999999976 3347889999999999999999999999975 3345 677899
Q ss_pred HHHHHHHHcCCHHH-HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 618 ALLGACIIHNNVEI-GRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 618 ~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++..+...|+.++ +.+.++++++++|+++.+ .++..+.+.++++..
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 99999999999876 578999999999998764 456777777777754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-15 Score=157.89 Aligned_cols=253 Identities=8% Similarity=-0.004 Sum_probs=190.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 039715 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMY 489 (805)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 489 (805)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666666666666666666666542 2234455556666666666666666666666654 34566677777777
Q ss_pred HhcCCHHHHHHHhhhcCCC---CHhHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 039715 490 AKCGSITDARLVFDMMNDW---NEVSWNAM--------------IS-GYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGV 551 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 551 (805)
...|++++|.+.|+++.+. +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 7777777777777766522 22233332 22 3777889999999999999853 2356788888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 628 (805)
...+...|++++|..+++.+.+. .| +...+..++..|.+.|++++|.+.++++ ...| +...|..++..+...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 88999999999999999998854 34 5778999999999999999999999876 2233 57889999999999999
Q ss_pred HHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCChHHHhh
Q 039715 629 VEIGRLSAQHILDFEPE------------DEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++|+..+++++++.|+ ++..+..++.+|...|++++|.+
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999998 78899999999999999999987
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.3e-15 Score=162.11 Aligned_cols=380 Identities=10% Similarity=-0.067 Sum_probs=200.9
Q ss_pred hhhHHHHHHHhhCCCCHHHHHHHHHHHHHh-----C---CCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC-------C
Q 039715 242 NFTFAFVLKACLGLDTIRVAKSAHGCALKT-----C---YEMDLYVAVALLDLYTKSGEISNARRIFEEMPK-------K 306 (805)
Q Consensus 242 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------~ 306 (805)
...|+.+...+...|+.++|.+.+.+.++. + .+....+|+.+...|...|++++|...|++..+ +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777778888888888888888877653 1 122345677788888888888888777765421 1
Q ss_pred ----CcccHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChh-HHHHHHHH---HhccCCchHHHHHHHHHHHhCCCc
Q 039715 307 ----DVIPWSFMIARYAQ--TDLSIDAVELFCRMRQAFVAPNQF-TFVSVLQA---CATMEGLDLGNQIHSLVVRVGLLS 376 (805)
Q Consensus 307 ----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~ 376 (805)
...+++.+..++.. .+++++|+..|++..+. .|+.. .+..+..+ +...++.++|.+.++..++.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 12234444444444 34677888888887764 34433 33333322 345566777777777777765 33
Q ss_pred cHHHHHHHHHHHHh----cCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh-hhHH
Q 039715 377 DVFVSNALMDVYAK----CGRMENSVELFAESP---KRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE-VTYS 448 (805)
Q Consensus 377 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 448 (805)
+..++..+...+.. .|+.++|.+.|++.. ..+...|..+...|...|++++|+..|++..+. .|+. .++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 44555555444443 456677777776533 335566777777888888888888888777664 3433 2344
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCC
Q 039715 449 SVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGL 525 (805)
Q Consensus 449 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 525 (805)
.+...+...+... .... ...........+..+.|...|++.. ..+..+|..+...|...|+
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 3333332111000 0000 0001111112233566666666654 2355677778888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 039715 526 SAEVLKVFDLMQQRGWRPNNL--TFVGVLS-ACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAK 602 (805)
Q Consensus 526 ~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 602 (805)
+++|++.|++.++....|... .+..+.. ...+.|+.++|+..|++.. .+.|+........ +.+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHHHH
Confidence 888888888887743322211 1222222 2346778888888887776 3456543222222 22223
Q ss_pred HHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 603 LIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 603 ~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
++++. ... .++.+|..|+..|...|++++|++.+++++++.|.+|.+...+|
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33222 112 34567778888888888888888888888888777777665554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-15 Score=152.98 Aligned_cols=237 Identities=11% Similarity=0.027 Sum_probs=195.9
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 039715 416 IVGYVQLGEVGKAMIMFSKMLEEQVPATE--VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG 493 (805)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 493 (805)
|.-....|++..|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+......+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34455689999999999887543 3443 3556678899999999999875543 23567788899999999999
Q ss_pred CHHHHHHHhhhcC----CC-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 039715 494 SITDARLVFDMMN----DW-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYF 568 (805)
Q Consensus 494 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 568 (805)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.|++ ..+...+..+...+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999874 23 677888888999999999999999987 356678888899999999999999999
Q ss_pred HHHHHhcCCCCChH---HHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 569 KSMVANYGIEPCIE---HYTSMVSLLGRAGHLDKAAKLIEGI--PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 569 ~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
+.+.+. .|+.. ...+++..+...|++++|..+|+++ ....++..|+.++.++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999865 46542 1234456666679999999999987 123578899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHh
Q 039715 644 PEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 644 p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
|+++.++..++.++...|+++++.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHH
Confidence 999999999999999999998754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-16 Score=164.23 Aligned_cols=259 Identities=10% Similarity=0.005 Sum_probs=131.8
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCC
Q 039715 348 SVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP---KRNHVTWNTMIVGYVQLGE 424 (805)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 424 (805)
.+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|...|++.. ..+..+|..+...|...|+
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence 33333333444444444444443332 3344555666666666666666666666543 2346677778888888888
Q ss_pred hHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 425 VGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
+++|+..|+++.+.. |+.. .+..+. ....++..+...|.+.|++++|.+.|+
T Consensus 149 ~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 149 QQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp HHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888888877642 2211 111110 011223333444455555555555554
Q ss_pred hcCC--C---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Q 039715 504 MMND--W---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI 577 (805)
Q Consensus 504 ~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 577 (805)
++.+ | +...|..++..|...|++++|++.|+++.+. .| +..++..+..++...|++++|+..|+++.+.
T Consensus 202 ~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 276 (365)
T 4eqf_A 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--- 276 (365)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 4431 1 3445555555555555555555555555553 23 3445555555555555555555555555532
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----CC--C--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039715 578 EP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI----PF--Q--------PSVMIWRALLGACIIHNNVEIGRLSAQHI 639 (805)
Q Consensus 578 ~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~--~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 639 (805)
.| +...+..++.+|.+.|++++|.+.++++ |. . .+..+|..+..++...|+.+.+..+.++.
T Consensus 277 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 23 2445555555555556666555555543 10 0 02456777777777777777777665553
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-14 Score=156.95 Aligned_cols=260 Identities=11% Similarity=-0.001 Sum_probs=154.9
Q ss_pred ChHHHHHHHhcCCC---CChhhHHHHHHH---HHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHh----ccCCchh
Q 039715 393 RMENSVELFAESPK---RNHVTWNTMIVG---YVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACA----SLAALEP 462 (805)
Q Consensus 393 ~~~~A~~~f~~~~~---~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~ 462 (805)
++++|...|++..+ .+...+..+... +...++.++|++.|++..+.. +.+...+..+...+. ..++.++
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 35555555554321 233333333332 223455556666666655432 112223333333322 2345566
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHh-----------------
Q 039715 463 GMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSM----------------- 522 (805)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~----------------- 522 (805)
|.+.+....+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|..
T Consensus 232 a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 232 GEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 666666665554 33455566666666666676666666666542 244455555544432
Q ss_pred --CCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChH----HHHHHHHH-HHhc
Q 039715 523 --HGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIE----HYTSMVSL-LGRA 594 (805)
Q Consensus 523 --~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~-~~~~ 594 (805)
.+..++|+..|++..+. .|+ ..++..+...+...|++++|...|++..+. .|+.. .+..+... +...
T Consensus 311 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQM 385 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHC
Confidence 23467888888888874 454 446778888899999999999999998843 44332 23344433 3478
Q ss_pred CCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 595 GHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 595 g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+.++|++.+++. .+.|+...+... .+.+..++++.++.+|+++.+|..||.+|...|++++|.+
T Consensus 386 ~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 386 KCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999998865 456665444333 3445677888999999999999999999999999999987
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-14 Score=147.15 Aligned_cols=276 Identities=13% Similarity=0.024 Sum_probs=136.3
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHH
Q 039715 307 DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMD 386 (805)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 386 (805)
+...|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++.+.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 85 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------------- 85 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------
Confidence 34456667777777777777777777766542 1133344444444444444444444444444332
Q ss_pred HHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHH
Q 039715 387 VYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQ 465 (805)
Q Consensus 387 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~ 465 (805)
..+...|..+...|...|++++|+..|+++.... |+.. .+..+...+
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------- 133 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------- 133 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH-----------
Confidence 1244556666666777777777777777776542 2222 221110000
Q ss_pred HHHHHHHcCCCCcHhHHHHH-HH-HHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039715 466 VHCLTVKANYDMDVVVANAL-ID-MYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG 540 (805)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~l-i~-~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 540 (805)
++......+ .. .|...|++++|.+.|+++. ..+...|..++..|...|++++|+..|+++.+.
T Consensus 134 -----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 201 (327)
T 3cv0_A 134 -----------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL- 201 (327)
T ss_dssp -----------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred -----------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 000000011 11 1334444444444444433 123445555555555555555555555555543
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC------
Q 039715 541 WRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP------ 611 (805)
Q Consensus 541 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p------ 611 (805)
.| +..++..+...+...|++++|...|+++.+. .| +...+..++..|.+.|++++|.+.++++ ...|
T Consensus 202 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 202 -RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 22 2344555555555555555555555555432 22 3445555555555556666555555543 1112
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 612 -------SVMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 612 -------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
+...|..+..++...|+.++|...++++++..|
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 244566666666666666666666665555433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-16 Score=179.13 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=112.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHhccCC-------CCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHH
Q 039715 91 LFATNVLLNVYVKLNRLPDATKLFDEMP-------ERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAF 163 (805)
Q Consensus 91 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 163 (805)
..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3689999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCc-cchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 039715 164 LKVLVSMGWA-ELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKV 214 (805)
Q Consensus 164 l~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 214 (805)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++..+++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999985 78999999999999999999999999888776544444444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-16 Score=173.51 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=114.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC-------CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 039715 476 DMDVVVANALIDMYAKCGSITDARLVFDMMN-------DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTF 548 (805)
Q Consensus 476 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 548 (805)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4456789999999999999999999997753 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 549 VGVLSACSNGGL-LEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 549 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999987 47899999999977 99999999999998888876666555554333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=141.67 Aligned_cols=188 Identities=15% Similarity=0.059 Sum_probs=157.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 039715 476 DMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGV 551 (805)
Q Consensus 476 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 551 (805)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ +.|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45667788889999999999999999998763 3678999999999999999999999999998 4565 4578888
Q ss_pred HHHHHcC-----------CCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHH
Q 039715 552 LSACSNG-----------GLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRA 618 (805)
Q Consensus 552 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ 618 (805)
..++... |++++|+..|++..+. .| +...+..+..+|...|++++|++.|++. ....++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 9999999999999853 56 4678899999999999999999999876 21267889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++.++...|++++|+..++++++++|+++..+..++.+|...|++++|.+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999976
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-14 Score=140.45 Aligned_cols=234 Identities=9% Similarity=-0.026 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCC--Cc----HhHHHH
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYD--MD----VVVANA 484 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 484 (805)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45566666666777777777777766655 55556666666666666666666666665553211 11 466777
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHH
Q 039715 485 LIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQ 563 (805)
Q Consensus 485 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 563 (805)
+...|.+.|++++|.+.|+++.+.+.. ...+...|++++|+..++++.. ..|+ ...+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHH
Confidence 777777888888888777776532111 2345566778888888888877 3454 3456677777778888888
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 564 GEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
|...|+.+.+.. +.+...+..++..|.+.|++++|.+.++++ ...| +...|..++..+...|+.++|...++++++
T Consensus 158 A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888877541 225677778888888888888888887765 2233 466788888888888888888888888888
Q ss_pred cC------CCCcchHHHHHH
Q 039715 642 FE------PEDEATHVLLSN 655 (805)
Q Consensus 642 ~~------p~~~~~~~~l~~ 655 (805)
+. |++...+..|..
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHHH
Confidence 87 777666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-14 Score=141.34 Aligned_cols=238 Identities=8% Similarity=-0.117 Sum_probs=185.3
Q ss_pred cCChHHHHHHHHHHhhcCCC--C-ChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 039715 422 LGEVGKAMIMFSKMLEEQVP--A-TEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDA 498 (805)
Q Consensus 422 ~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 498 (805)
.|++++|+..|+++.+.... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777777765321 1 23466667777777788888888887777765 44677888899999999999999
Q ss_pred HHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 039715 499 RLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANY 575 (805)
Q Consensus 499 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 575 (805)
.+.|+++.+ .+...|..++..|...|++++|+..|+++.+ +.|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999988863 3678999999999999999999999999998 4676665555555667779999999999888765
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 576 GIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 576 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
..++...+ .++..+...+..++|.+.+++. ...|+ ...|..++..|...|++++|+..++++++++|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23344444 4777788888999999999865 22232 4688999999999999999999999999999977554
Q ss_pred HHHHHHHHHhcCChHHHhh
Q 039715 650 HVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 650 ~~~l~~~~~~~g~~~~a~~ 668 (805)
.+.++...|++++|.+
T Consensus 252 ---~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQD 267 (275)
T ss_dssp ---HHHHHHHHHHHHHC--
T ss_pred ---HHHHHHHHHHHHhhHH
Confidence 4778889999999865
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-14 Score=139.88 Aligned_cols=210 Identities=7% Similarity=-0.060 Sum_probs=185.1
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---C-------HhHHH
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---N-------EVSWN 514 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~-------~~~~~ 514 (805)
..+..+...+...|++++|...+..+++.. .+..++..+...|...|++++|.+.|++..+. + ...|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356777888999999999999999999987 77889999999999999999999999988642 2 57899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHh
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGR 593 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 593 (805)
.+...|...|++++|+..|+++.+ +.|+.. .+...|++++|...++.+.. ..| +...+..++..+.+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHH
Confidence 999999999999999999999999 456643 45566889999999999884 345 46788899999999
Q ss_pred cCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 594 AGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 594 ~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.|++++|.+.++++ ... .+..+|..++..+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999876 223 4678899999999999999999999999999999999999999999999999999977
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-13 Score=138.22 Aligned_cols=245 Identities=10% Similarity=0.031 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHh
Q 039715 381 SNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE--VTYSSVLRACA 455 (805)
Q Consensus 381 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 455 (805)
.......|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.+..|+. ..+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455566666666666666665332 23445666666666666666666666666552211111 12444444444
Q ss_pred ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHH
Q 039715 456 SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDL 535 (805)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 535 (805)
..|++++|...+..+.+.. +. +...|..+...|...|++++|+..|++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~-------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TT-------------------------------RLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TT-------------------------------CTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcC-cc-------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555554444433 22 334444455555555555555555555
Q ss_pred HHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCC---HHHHHHHHHcC---
Q 039715 536 MQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGH---LDKAAKLIEGI--- 607 (805)
Q Consensus 536 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~---~~eA~~~~~~~--- 607 (805)
..+. .|+ ...+..+...+...+++++|...|+.+.+. .|+ ...+..+..++...|+ +++|...++++
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 4442 332 223333331222333555555555555432 232 3444444555554444 44444444322
Q ss_pred -CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 608 -PFQPS------VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 608 -~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
...|+ ..+|..++..|...|++++|+..++++++++|+++.+.-.++.+....+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 01122 24678888899999999999999999999999999999888877665543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-13 Score=144.97 Aligned_cols=243 Identities=10% Similarity=0.002 Sum_probs=189.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhccCC-chhHHHHHHHHHHcCCCCcHhHHHHHHH
Q 039715 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPAT-EVTYSSVLRACASLAA-LEPGMQVHCLTVKANYDMDVVVANALID 487 (805)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 487 (805)
..|+.+...+.+.|++++|+..|++.+.. .|+ ...|..+..++...|+ +++|...++.+++.. +.+..+|..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 45666666777777777777777777664 333 3456666666777775 777777777777765 446777888888
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc-CCCHH
Q 039715 488 MYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSN-GGLLE 562 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 562 (805)
+|.+.|++++|+..|+++. ..+...|..+..++...|++++|+..|+++++ +.|+ ...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888876 34778899999999999999999999999998 4564 5678888888888 66657
Q ss_pred HH-----HHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC--CHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcC------
Q 039715 563 QG-----EAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG--HLDKAAKLIEGIPFQPS-VMIWRALLGACIIHN------ 627 (805)
Q Consensus 563 ~a-----~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g--~~~eA~~~~~~~~~~p~-~~~~~~l~~~~~~~g------ 627 (805)
+| +..|++.+. +.| +...|..+..+|.+.| ++++|++.++++...|+ ...+..++..|...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 477888774 456 4678889999999988 68999999987755554 678899999988874
Q ss_pred --C-HHHHHHHHHHH-hccCCCCcchHHHHHHHHHhc
Q 039715 628 --N-VEIGRLSAQHI-LDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 628 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 660 (805)
+ .++|+.+++++ ++++|.....|..++..+..+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999999999999887765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-13 Score=146.11 Aligned_cols=338 Identities=10% Similarity=0.007 Sum_probs=182.4
Q ss_pred hCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCCh---HHHHHHHhhCCCCCcccHHHHHHHHHhCC-----Ch
Q 039715 253 LGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEI---SNARRIFEEMPKKDVIPWSFMIARYAQTD-----LS 324 (805)
Q Consensus 253 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~ 324 (805)
.+.|+++.|.+.+....+.|. ...+..|..+|...|+. ++|...|++..+.++..+..|...+...+ ++
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 344555555555555555542 22233344555556666 78888888777666667777777565555 66
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC----hHHH
Q 039715 325 IDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGL---DLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGR----MENS 397 (805)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~----~~~A 397 (805)
++|+..|++..+.|.. ..+..+...+...+.. ..+.+.+....+.| +......|..+|...+. .+.+
T Consensus 91 ~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 91 HEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 7888888888776532 2444555555444332 33444444444444 23455566666666663 3344
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcC---ChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcC
Q 039715 398 VELFAESPKRNHVTWNTMIVGYVQLG---EVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKAN 474 (805)
Q Consensus 398 ~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 474 (805)
..+++.....++..+..|...|...| +.++|++.|++..+.|
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----------------------------------- 209 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG----------------------------------- 209 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-----------------------------------
Confidence 44455555555556666666666666 6666666666665544
Q ss_pred CCCcHhHHHHHHHHHHhc----CCHHHHHHHhhhcCCCCHhHHHHHHHH-H--HhCCChHHHHHHHHHHHHcCCCCCHHH
Q 039715 475 YDMDVVVANALIDMYAKC----GSITDARLVFDMMNDWNEVSWNAMISG-Y--SMHGLSAEVLKVFDLMQQRGWRPNNLT 547 (805)
Q Consensus 475 ~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t 547 (805)
+++...+..|..+|... +++++|.+.|++....+...+..+... | ...|++++|+..|++..+.| +...
T Consensus 210 -~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 210 -TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp -CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 22233334444445433 567777777766663356666666666 3 45677888888888877765 4555
Q ss_pred HHHHHHHHHcCC-----CHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHH
Q 039715 548 FVGVLSACSNGG-----LLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGR----AGHLDKAAKLIEGIPFQPSVMIWRA 618 (805)
Q Consensus 548 ~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ 618 (805)
...+...|. .| ++++|..+|++.. .-++..+..|..+|.. ..++++|..+|++.....+......
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~ 359 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFA 359 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHH
Confidence 555555555 34 7777777776643 2355666667766665 3377777777776532334444555
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHhccCC
Q 039715 619 LLGACII----HNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 619 l~~~~~~----~g~~~~a~~~~~~~~~~~p 644 (805)
|...|.. ..|.++|..+++++.+..+
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5555543 3477888888888777654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-12 Score=128.68 Aligned_cols=228 Identities=7% Similarity=-0.108 Sum_probs=169.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhc----cCCchhHHHHHHHHHHcCCCCcHhHHH
Q 039715 408 NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACAS----LAALEPGMQVHCLTVKANYDMDVVVAN 483 (805)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 483 (805)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666666666777777777777776652 233455556666666 677777777777776665 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHhhhcCC-CCHhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039715 484 ALIDMYAK----CGSITDARLVFDMMND-WNEVSWNAMISGYSM----HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSA 554 (805)
Q Consensus 484 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 554 (805)
.+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .|++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 77778888 8888888888877763 367788888888888 888999999999888865 45566677777
Q ss_pred HHc----CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-
Q 039715 555 CSN----GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGR----AGHLDKAAKLIEGIPFQPSVMIWRALLGACII- 625 (805)
Q Consensus 555 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~- 625 (805)
+.. .+++++|..+|++..+. .+...+..+..+|.+ .|++++|.+.+++.-...+...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 776 88999999999888754 245677788888888 89999999988866322346778888888888
Q ss_pred ---cCCHHHHHHHHHHHhccCCCCcc
Q 039715 626 ---HNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 626 ---~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.++.++|+..+++++++.|+++.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999999886543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-13 Score=131.38 Aligned_cols=204 Identities=12% Similarity=0.068 Sum_probs=145.7
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 530 (805)
+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...|...|++++|+
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence 333334444444433333322 2345566667777777788888877777665 236678888888888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC
Q 039715 531 KVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF 609 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~ 609 (805)
+.|+++.+.. +.+...+..+...+...|++++|..+++++.+. ...+...+..++..|.+.|++++|.+.++++ ..
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 112 DMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999888853 335567777888888899999999999888754 1235678888899999999999999998865 22
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 610 -QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 610 -~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
..+..+|..+...|...|+.++|+..+++++++.|+++..+..++.+....|
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 2457789999999999999999999999999999999998888876655444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.7e-12 Score=124.40 Aligned_cols=205 Identities=12% Similarity=0.015 Sum_probs=149.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 409 HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
...|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 3456666666666666666666666665432 2234556666667
Q ss_pred HHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHH
Q 039715 489 YAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 564 (805)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776654 23566777788888888888888888888877434554 34667777778888888888
Q ss_pred HHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 565 EAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 565 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
..+|+++.+. .| +...+..++..|.+.|++++|.+.++++ ... .+...|..+...+...|+.++|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888754 34 4677888888888999999998888865 223 4566788888889999999999999999999
Q ss_pred cCCCCcchHHH
Q 039715 642 FEPEDEATHVL 652 (805)
Q Consensus 642 ~~p~~~~~~~~ 652 (805)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99988766543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-12 Score=125.76 Aligned_cols=191 Identities=15% Similarity=0.082 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 039715 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMY 489 (805)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 489 (805)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444444555555555555555544321 1122233333333334444444444444333332 22334444444444
Q ss_pred Hhc-----------CCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 490 AKC-----------GSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 490 ~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++.++.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 444 555555555555442 244555555555666666666666666655544 4445555555555
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
...|++++|+..|+.+.+. .| +...+..+..++.+.|++++|.+.+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5566666666666555532 33 3445555555555555555555555543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-12 Score=140.20 Aligned_cols=334 Identities=9% Similarity=-0.047 Sum_probs=196.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 039715 313 FMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGL---DLGNQIHSLVVRVGLLSDVFVSNALMDVYA 389 (805)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 389 (805)
.+...+.+.|++++|+.+|++..+.| +...+..+...+...|+. ++|...++...+. +...+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35666777888888888888887765 233333444445556666 7888888777754 4445566666455
Q ss_pred hcC-----ChHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChHH---HHHHHHHHhhcCCCCChhhHHHHHHHHhccCCc
Q 039715 390 KCG-----RMENSVELFAESPKR-NHVTWNTMIVGYVQLGEVGK---AMIMFSKMLEEQVPATEVTYSSVLRACASLAAL 460 (805)
Q Consensus 390 ~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 460 (805)
..| +.++|...|++..++ +...+..|...|...+..++ +.+.+.+....| +......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 544 667788777765443 44567777777777655433 444444444433 234555566666666656
Q ss_pred hhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC---CHHHHHHHhhhcCC---CCHhHHHHHHHHHHhC----CChHHHH
Q 039715 461 EPGMQVHCLTVKANYDMDVVVANALIDMYAKCG---SITDARLVFDMMND---WNEVSWNAMISGYSMH----GLSAEVL 530 (805)
Q Consensus 461 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 530 (805)
+.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ .+...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 555554333333322334447777888888888 78888888877653 2444446677766544 6788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC-----CHHHHHH
Q 039715 531 KVFDLMQQRGWRPNNLTFVGVLSA-C--SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAG-----HLDKAAK 602 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~eA~~ 602 (805)
..|++.. .| +...+..+... + ...|+.++|..+|++..+. | +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8888876 33 33445555544 3 4577888888888877643 3 5666777777776 45 8888888
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCChHHHhh
Q 039715 603 LIEGIPFQPSVMIWRALLGACII----HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM----ARSWEKAAS 668 (805)
Q Consensus 603 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~ 668 (805)
+|++.. ..++..+..|...|.. ..+.++|...++++.+ +.++.+...|+.+|.. ..+.++|..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 888777 5566777777766654 2378888888888776 3456777888888775 335555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=141.63 Aligned_cols=257 Identities=11% Similarity=0.012 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC-------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-CChhhHHH
Q 039715 380 VSNALMDVYAKCGRMENSVELFAESPK-------R--NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVP-ATEVTYSS 449 (805)
Q Consensus 380 ~~~~Li~~y~~~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ 449 (805)
++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..|++..+.... ++.
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 123 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK----- 123 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-----
Confidence 344455555555555555555443211 0 1335666777777777777777777776542100 010
Q ss_pred HHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC--------------------HHHHHHHhhhcCC--
Q 039715 450 VLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGS--------------------ITDARLVFDMMND-- 507 (805)
Q Consensus 450 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--------------------~~~A~~~~~~~~~-- 507 (805)
.....++..+...|...|+ +++|.+.|++...
T Consensus 124 --------------------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 124 --------------------------VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0012234444455555555 5555555544321
Q ss_pred -----C--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 039715 508 -----W--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW-RPN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANY 575 (805)
Q Consensus 508 -----~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 575 (805)
+ ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|..+++......
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 234677777888888888888888887765210 122 2267777778888888888888888876432
Q ss_pred CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 576 GIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 576 ~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
.-.++ ...+..++..|.+.|++++|.+.+++. +..++ ..++..+...|...|++++|...+++++++.
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11112 457778888899999999999888765 11122 4578888999999999999999999999874
Q ss_pred C------CCcchHHHHHHHHHhcCChHHHh
Q 039715 644 P------EDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 644 p------~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
+ ....++..++.+|...|+...+.
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 3 33567888999999999876543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-11 Score=120.33 Aligned_cols=207 Identities=13% Similarity=0.026 Sum_probs=148.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHH
Q 039715 408 NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALID 487 (805)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 487 (805)
+...|..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHH
Confidence 34456666667777777777777776665532 223345556666
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHH
Q 039715 488 MYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMH-GLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 562 (805)
.|...|++++|.+.|+++. ..+...|..++..|... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6667777777777776654 23566777788888888 888888888888877333444 346777777788888888
Q ss_pred HHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039715 563 QGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ--PSVMIWRALLGACIIHNNVEIGRLSAQH 638 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 638 (805)
+|..+++.+.+. .| +...+..++..|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.|...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 888888888754 34 4677888888888888888888888765 222 4566777777778889999999999999
Q ss_pred HhccCCCCcchHHHH
Q 039715 639 ILDFEPEDEATHVLL 653 (805)
Q Consensus 639 ~~~~~p~~~~~~~~l 653 (805)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 998999887776554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-11 Score=123.88 Aligned_cols=241 Identities=8% Similarity=0.016 Sum_probs=175.5
Q ss_pred hhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh----hhHHHHH
Q 039715 343 QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK--RNH----VTWNTMI 416 (805)
Q Consensus 343 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~----~~~~~li 416 (805)
...+......+...|+++.|...++.+++.. +.+..++..+...|...|++++|...|++..+ ++. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445666778899999999999999999875 44566888899999999999999999987544 222 2489999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 039715 417 VGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSIT 496 (805)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 496 (805)
..|...|++++|+..|++..+.. |+... ++..+...|.+.|+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~----------------------------------~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD--TTRLD----------------------------------MYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCTH----------------------------------HHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--cccHH----------------------------------HHHHHHHHHHHccCHH
Confidence 99999999999999999998753 33211 1344566677778888
Q ss_pred HHHHHhhhcCC---CCHhHHHHHH-HHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCC---HHHHHHHH
Q 039715 497 DARLVFDMMND---WNEVSWNAMI-SGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGL---LEQGEAYF 568 (805)
Q Consensus 497 ~A~~~~~~~~~---~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~ 568 (805)
+|.+.|++..+ .+...|..+. ..|. .+++++|++.|+++.+. .|+ ...+..+..++...|+ .++|...+
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 202 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYY 202 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence 88888887764 2566777777 4444 45888888888888884 454 4566667777777777 77788888
Q ss_pred HHHHHhcCCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 569 KSMVANYGIEPCI------EHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 569 ~~m~~~~~~~p~~------~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
+++.+...-.|+. ..|..+...|.+.|++++|.+.++++ ...| +...+..+....
T Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 203 EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 8877654333442 57777888888899999999988866 2334 455555554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.9e-12 Score=125.47 Aligned_cols=188 Identities=8% Similarity=-0.069 Sum_probs=165.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 5677888899999999999999999876 3477899999999999999999999999999853 23566888888899
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a 632 (805)
...|++++|..+++++.. .+..| +...+..++..|.+.|++++|.+.++++ ... .+...|..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999885 23556 4678889999999999999999999876 223 3578899999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 633 RLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 633 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...++++++..|++...+..++.+|...|++++|.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999999999999999999999976
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=144.71 Aligned_cols=187 Identities=6% Similarity=-0.079 Sum_probs=159.0
Q ss_pred CcHhHHHHHHHHHHhcCCH-HHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSI-TDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVL 552 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 552 (805)
.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|...|++++|++.|++.++ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3556666777777777777 777777776652 3577888888899999999999999999988 568877888888
Q ss_pred HHHHcC---------CCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhc--------CCHHHHHHHHHcC-CCCC--
Q 039715 553 SACSNG---------GLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRA--------GHLDKAAKLIEGI-PFQP-- 611 (805)
Q Consensus 553 ~a~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--------g~~~eA~~~~~~~-~~~p-- 611 (805)
.++... |++++|+..|+++.+. .| +...|..++.+|.+. |++++|++.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 888888 9999999999998854 45 577888999999888 9999999999876 2345
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 612 --SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 612 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...|..+..+|...|++++|+..++++++++|+++.++..++.++...|++++|.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999987
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-11 Score=123.03 Aligned_cols=214 Identities=9% Similarity=-0.057 Sum_probs=186.8
Q ss_pred ChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHhhhcCCC-CHhHHHHHH
Q 039715 443 TEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK----CGSITDARLVFDMMNDW-NEVSWNAMI 517 (805)
Q Consensus 443 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li 517 (805)
+..++..+...+...|++++|...+....+. .+...+..+..+|.. .|++++|.+.|++..+. +..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456677778888999999999999999984 356788889999999 99999999999988643 788999999
Q ss_pred HHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 518 SGYSM----HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSN----GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 518 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .|++++|..+|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999965 67788888888988 99999999999999854 3 5677888999
Q ss_pred HHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh--
Q 039715 590 LLGR----AGHLDKAAKLIEGIPFQPSVMIWRALLGACII----HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM-- 659 (805)
Q Consensus 590 ~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 659 (805)
+|.+ .+++++|.+.+++.-...+...+..+...|.. .+++++|+..++++++..| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999976323467788999999999 9999999999999999876 7789999999999
Q ss_pred --cCChHHHhh
Q 039715 660 --ARSWEKAAS 668 (805)
Q Consensus 660 --~g~~~~a~~ 668 (805)
.|++++|.+
T Consensus 233 ~~~~~~~~A~~ 243 (273)
T 1ouv_A 233 GVTRNEKQAIE 243 (273)
T ss_dssp SSSCCSTTHHH
T ss_pred CcccCHHHHHH
Confidence 999999876
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=121.03 Aligned_cols=190 Identities=11% Similarity=0.003 Sum_probs=165.7
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
.+..++..+...|...|++++|.+.|+++. ..+...|..++..|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 356778889999999999999999999876 3467899999999999999999999999999853 235668888889
Q ss_pred HHHcC-CCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCH
Q 039715 554 ACSNG-GLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNV 629 (805)
Q Consensus 554 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 629 (805)
.+... |++++|..+++.+.+ .+..|+ ...+..++..|.+.|++++|.+.++++ ...| +...|..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999986 234453 578889999999999999999999876 2234 578899999999999999
Q ss_pred HHHHHHHHHHhccCC-CCcchHHHHHHHHHhcCChHHHhh
Q 039715 630 EIGRLSAQHILDFEP-EDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 630 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++|...++++++..| +++..+..++.++...|+.++|..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 999999999999999 999999999999999999999866
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=137.87 Aligned_cols=209 Identities=10% Similarity=0.029 Sum_probs=181.6
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC-HHHHHHHhhhcCC---CCHhHHHHHHHHHH
Q 039715 446 TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGS-ITDARLVFDMMND---WNEVSWNAMISGYS 521 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~ 521 (805)
.+..+...+...|++++|...+..+++.. +.+..+|+.+..+|.+.|+ +++|+..|+++.. .+...|+.+..+|.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56677778888999999999999999986 5578899999999999997 9999999999873 47889999999999
Q ss_pred hCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHh-cCCHH
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGR-AGHLD 598 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~-~g~~~ 598 (805)
..|++++|+..|+++++ +.| +...|..+..++...|++++|+..|+++++. .| +...|+.+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999 566 4568889999999999999999999999954 56 57889999999999 67767
Q ss_pred HH-----HHHHHcC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 599 KA-----AKLIEGI-PFQP-SVMIWRALLGACIIHN--NVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 599 eA-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
+| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 77 4666654 3345 5679999999999888 689999999998 999999999999999999985
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-11 Score=125.88 Aligned_cols=239 Identities=12% Similarity=-0.057 Sum_probs=151.0
Q ss_pred CCChhHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHH
Q 039715 321 TDLSIDAVELFCRMRQAFVAP---NQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENS 397 (805)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 397 (805)
.|++++|+..|+++.+..... +..++..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 466777777777777653211 24456666667777777777777777777765 44566777788888888888888
Q ss_pred HHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcC
Q 039715 398 VELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKAN 474 (805)
Q Consensus 398 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 474 (805)
...|++..+ .+...|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888876542 35677888888888888888888888888774 3554444444455566677777777776666653
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCC-------HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 039715 475 YDMDVVVANALIDMYAKCGSITDARLVFDMMNDWN-------EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT 547 (805)
Q Consensus 475 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 547 (805)
+++...+ .++..+...++.++|.+.+++....+ ...|..+...|...|++++|+..|+++.+ ..|+..
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~- 249 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNF- 249 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTC-
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhH-
Confidence 2233333 35666666677777777777665432 35566666666666666666666666666 344321
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYF 568 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~ 568 (805)
.....++...|++++|++.+
T Consensus 250 -~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 -VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHhhHHHH
Confidence 11122344445555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=139.34 Aligned_cols=222 Identities=12% Similarity=-0.007 Sum_probs=136.1
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHc----C-CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---------CHhH
Q 039715 447 YSSVLRACASLAALEPGMQVHCLTVKA----N-YDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---------NEVS 512 (805)
Q Consensus 447 ~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~ 512 (805)
+..+...+...|++++|...+..+++. + .+....++..+...|...|++++|...|++..+. ...+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 333444444444444444444443321 1 1122345566666677777777777766655421 2346
Q ss_pred HHHHHHHHHhCCC-----------------hHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 039715 513 WNAMISGYSMHGL-----------------SAEVLKVFDLMQQR----GWRPN-NLTFVGVLSACSNGGLLEQGEAYFKS 570 (805)
Q Consensus 513 ~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 570 (805)
|..+...|...|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|..++++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6667777777777 77777777765542 11111 23566666677778888888888777
Q ss_pred HHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039715 571 MVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQH 638 (805)
Q Consensus 571 m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 638 (805)
..+...-.++ ...+..++..|...|++++|.+.+++. +...+ ..+|..+...+...|++++|+..+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7643211112 236677777888888888888877654 11111 35677777788888888888888888
Q ss_pred HhccCCCC------cchHHHHHHHHHhcCChHHHhh
Q 039715 639 ILDFEPED------EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 639 ~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++.++. ...+..++.+|...|++++|.+
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 88765432 3467778888888888888866
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=138.42 Aligned_cols=258 Identities=11% Similarity=0.031 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHhccCCchhHHHHHHHHHHc----CCC-CcHhHH
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPAT---EVTYSSVLRACASLAALEPGMQVHCLTVKA----NYD-MDVVVA 482 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 482 (805)
.+......+...|++++|+..|++..+...... ...+..+...+...|+++.|...+..+.+. +.. ....++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 444455555666666666666666655421100 124445555566666666666665554432 111 124567
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCC-----C----HhHHHHHHHHHHhCCC--------------------hHHHHHHH
Q 039715 483 NALIDMYAKCGSITDARLVFDMMNDW-----N----EVSWNAMISGYSMHGL--------------------SAEVLKVF 533 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~--------------------~~~A~~l~ 533 (805)
..+...|...|++++|...|++..+. + ..+|..+...|...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 78888999999999999988877532 2 4488889999999999 99999999
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 534 DLMQQR----GWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 534 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
++..+. +-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..++..|.+.|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 987652 11222 236777888899999999999999998754322232 347888999999999999999999
Q ss_pred HcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChHHHhh
Q 039715 605 EGI----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED------EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 605 ~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++. +..++ ..++..++..|...|++++|+..+++++++.++. ...+..++.+|...|++++|.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 865 11122 4578899999999999999999999999876543 5578899999999999999987
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=5e-12 Score=125.55 Aligned_cols=189 Identities=9% Similarity=0.049 Sum_probs=148.6
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
.....+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677888899999999999999998864 367899999999999999999999999999853 235668888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACIIHNNVEI 631 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 631 (805)
.+...|++++|..+++++.+.. ..+...+..++..|.+.|++++|.+.++++ .. ..+...|..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998642 336778899999999999999999999876 22 3467889999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+..++++++..|+++..+..++.+|...|++++|.+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999999999999999999999999977
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-12 Score=133.63 Aligned_cols=190 Identities=11% Similarity=0.015 Sum_probs=113.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HhHHHHHHHHHHhCCC--------------------hHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMND-----WN----EVSWNAMISGYSMHGL--------------------SAEV 529 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 529 (805)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34455566666666666666666665432 11 2356666666666666 6667
Q ss_pred HHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHH
Q 039715 530 LKVFDLMQQR----GWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 530 ~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA 600 (805)
++.+++..+. +-.|. ..++..+...+...|++++|..+++...+...-.++ ...+..++..|.+.|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6666665431 11111 224555666666777777777777766533211111 23566667777777777777
Q ss_pred HHHHHcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChHHH
Q 039715 601 AKLIEGI----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED------EATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 601 ~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 666 (805)
.+.+++. +..++ ..++..+...+...|++++|...+++++++.|+. ..++..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7776644 11112 3456667777777777777777777777664432 33566777777777777777
Q ss_pred hh
Q 039715 667 AS 668 (805)
Q Consensus 667 ~~ 668 (805)
.+
T Consensus 323 ~~ 324 (338)
T 3ro2_A 323 MH 324 (338)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=116.07 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=82.3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLS 553 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 553 (805)
+..+|..|...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..+++.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 344555555555555555555555555441 24455555555555555555555555555552 22 2233444444
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVE 630 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 630 (805)
.+...++++.+...+...... .| +...+..++..|.+.|++++|++.|++. ...| +..+|..++.+|...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 455555555555555555432 22 3344455555555555555555555433 1122 3444555555555555555
Q ss_pred HHHHHHHHHhccCCC
Q 039715 631 IGRLSAQHILDFEPE 645 (805)
Q Consensus 631 ~a~~~~~~~~~~~p~ 645 (805)
+|+..++++++++|+
T Consensus 159 ~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 159 EAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhCCcc
Confidence 555555555555553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-09 Score=120.61 Aligned_cols=417 Identities=9% Similarity=0.004 Sum_probs=285.5
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCC---hHHHHHHHhh
Q 039715 226 ALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGE---ISNARRIFEE 302 (805)
Q Consensus 226 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~ 302 (805)
.+..|++.+.... -|..+|..++..+...+.++.++.+++.+++. ++.....|...+..-.+.|. ++.+..+|++
T Consensus 51 ~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3334445554443 47788999999999899999999999999987 46677889889998889898 9999999998
Q ss_pred CCC-----CCcccHHHHHHHHHhCCCh----h----HHHHHHHHHHH-CCC-CCCh-hHHHHHHHHHh---------ccC
Q 039715 303 MPK-----KDVIPWSFMIARYAQTDLS----I----DAVELFCRMRQ-AFV-APNQ-FTFVSVLQACA---------TME 357 (805)
Q Consensus 303 ~~~-----~~~~~~~~li~~~~~~g~~----~----~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~---------~~~ 357 (805)
... +++..|..-+.-..+.++. + ...++|+..+. .|. .|+. ..|...+.-.. ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 754 4555687777665555443 2 34467776554 466 5654 45555554432 233
Q ss_pred CchHHHHHHHHHHHhCCCccHHHHHHHHHHHHh-------------cCChHHHHHHHhc-------CCC-----------
Q 039715 358 GLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAK-------------CGRMENSVELFAE-------SPK----------- 406 (805)
Q Consensus 358 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-------------~g~~~~A~~~f~~-------~~~----------- 406 (805)
+++.+..+|..++......-..+|......-.. ..+++.|...+.+ +..
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 467788888888853222222333222211111 1123334444432 111
Q ss_pred ---C--C------hhhHHHHHHHHHHcC-------ChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHH-HHH
Q 039715 407 ---R--N------HVTWNTMIVGYVQLG-------EVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGM-QVH 467 (805)
Q Consensus 407 ---~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~ 467 (805)
| + ...|...+.---.++ ..+.+..+|++.+..- +-+...|.....-+...|+.+.|. .++
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0 0 134666665433332 1234567788887652 335556667777777889999996 999
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-------------C------------CHhHHHHHHHHHHh
Q 039715 468 CLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND-------------W------------NEVSWNAMISGYSM 522 (805)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~------------~~~~~~~li~~~~~ 522 (805)
+..+... +.+...+-.++..+-+.|++++|.++|+++.+ | ....|...+....+
T Consensus 368 ~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 9998754 56777888899999999999999999998764 2 12368888888888
Q ss_pred CCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 039715 523 HGLSAEVLKVFDLMQQR-GWRPNNLTFVGVLSACSNG-GLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 600 (805)
.|..+.|.++|.+..+. + .+....|......-.+. ++.+.|..+|+...+.++ -+...+...++...+.|+.+.|
T Consensus 447 ~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999885 2 12233444333332333 459999999999997742 3556677889999999999999
Q ss_pred HHHHHcC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 601 AKLIEGI-PFQP----SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 601 ~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
..+|++. ...| ....|...+..-..+|+.+.+..+.+++.+..|+++..
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 9999975 2223 24689999999999999999999999999999987543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=138.68 Aligned_cols=268 Identities=10% Similarity=-0.012 Sum_probs=173.9
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCcc---HHHHHHHHHHHHhcCChHHHHHHHhcCCC---------CChhhHH
Q 039715 346 FVSVLQACATMEGLDLGNQIHSLVVRVGLLSD---VFVSNALMDVYAKCGRMENSVELFAESPK---------RNHVTWN 413 (805)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~ 413 (805)
+..+...+...|++++|...++.+++.+.... ..++..+...|...|++++|...|++..+ .....|.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444456667777777777777776542211 13556666666666666666666654321 1223455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcC-CCCcHhHHHHHHHHHHhc
Q 039715 414 TMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKAN-YDMDVVVANALIDMYAKC 492 (805)
Q Consensus 414 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~ 492 (805)
.+...|...|++++|+..|++...... +.+ .+....++..+...|...
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHHc
Confidence 556666666666666666665543200 001 011234556666667777
Q ss_pred CC-----------------HHHHHHHhhhcCC-------C--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC-
Q 039715 493 GS-----------------ITDARLVFDMMND-------W--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR-PN- 544 (805)
Q Consensus 493 g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~- 544 (805)
|+ +++|.+.|++..+ + ....|..+...|...|++++|+..|++..+.... ++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 77 6777666665432 1 2347778888888889999999888887763111 12
Q ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHcCC----CCCC-
Q 039715 545 ---NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP----CIEHYTSMVSLLGRAGHLDKAAKLIEGIP----FQPS- 612 (805)
Q Consensus 545 ---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~- 612 (805)
..++..+...+...|++++|..++++......-.. ....+..++.+|.+.|++++|.+.+++.- ..++
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 22677778888899999999999988775421111 14677888899999999999999988651 1112
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 613 ---VMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 613 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
..++..+...|...|++++|...+++++++.+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34788888999999999999999999999877
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-11 Score=113.52 Aligned_cols=155 Identities=10% Similarity=0.021 Sum_probs=138.0
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTS 586 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 586 (805)
+...|..+...|...|++++|++.|++.++ +.|+ ..++..+..++...|++++|...++..... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 567899999999999999999999999998 4665 557888889999999999999999998854 34 5677888
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
+...+...+++++|.+.+++. ...| +...|..++..+...|++++|+..++++++++|+++.++..+|.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 889999999999999999866 2234 57789999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 039715 665 KAAS 668 (805)
Q Consensus 665 ~a~~ 668 (805)
+|.+
T Consensus 159 ~A~~ 162 (184)
T 3vtx_A 159 EAVK 162 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.2e-12 Score=143.34 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=131.8
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTS 586 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 586 (805)
+..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++.+.|++++|+..|++.++ +.| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788888888888888888888888888 5665 45788888888888899999888888874 456 4678888
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
++.+|.+.|++++|++.|++. .+.| +...|..++.+|...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 889999999999999888865 3445 46789999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 039715 665 KAAS 668 (805)
Q Consensus 665 ~a~~ 668 (805)
+|.+
T Consensus 163 ~A~~ 166 (723)
T 4gyw_A 163 DYDE 166 (723)
T ss_dssp THHH
T ss_pred HHHH
Confidence 9876
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-10 Score=116.13 Aligned_cols=219 Identities=9% Similarity=0.027 Sum_probs=166.3
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHh-------ccCCc-------hhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 039715 426 GKAMIMFSKMLEEQVPATEVTYSSVLRACA-------SLAAL-------EPGMQVHCLTVKANYDMDVVVANALIDMYAK 491 (805)
Q Consensus 426 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 491 (805)
++|+.+|++..... +-+...|..++..+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776542 223334555544443 34665 7888888888874224466788999999999
Q ss_pred cCCHHHHHHHhhhcCC--C-CHh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCHHHHHH
Q 039715 492 CGSITDARLVFDMMND--W-NEV-SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC-SNGGLLEQGEA 566 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 566 (805)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998864 2 343 89999999999999999999999999853 22344454443332 23799999999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039715 567 YFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQP--SVMIWRALLGACIIHNNVEIGRLSAQHIL 640 (805)
Q Consensus 567 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 640 (805)
+|+...+.. .-+...|..++..+.+.|++++|..+|++. ++.| ....|..++.....+|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998653 225788999999999999999999999866 2344 46789999999999999999999999999
Q ss_pred ccCCCCcc
Q 039715 641 DFEPEDEA 648 (805)
Q Consensus 641 ~~~p~~~~ 648 (805)
+..|+++.
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 99998654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-11 Score=126.89 Aligned_cols=134 Identities=11% Similarity=-0.032 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGW-RPN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IE 582 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 582 (805)
.+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+++.......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455566666666666666666666554210 011 125556666667777777777777766543211111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
.+..++..|.+.|++++|.+.++++ +..++ ..+|..+...|...|++++|...+++++++.++
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6677777788888888887777654 11112 346788888899999999999999999988764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-09 Score=118.24 Aligned_cols=225 Identities=8% Similarity=-0.001 Sum_probs=113.8
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHH-HHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 039715 363 NQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSV-ELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE 438 (805)
Q Consensus 363 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~-~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 438 (805)
..+|+.++... +.+..+|-..+..+.+.|+.++|. .+|++... .+...|-..+...-+.|++++|.++|+++...
T Consensus 329 ~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 329 TYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455555432 334455555555555555555554 55554321 23344555555555556666666666555542
Q ss_pred C---------CCCC------------hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHH
Q 039715 439 Q---------VPAT------------EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG-SIT 496 (805)
Q Consensus 439 g---------~~p~------------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~ 496 (805)
. -.|+ ...|...+....+.|.++.|+.+|..+.+.-......+|...+.+-.++| +.+
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e 487 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTK 487 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHH
Confidence 1 0121 12345555555556666666666666665411111222322233333333 366
Q ss_pred HHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 039715 497 DARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN--NLTFVGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 497 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
.|.++|+...+ .+...|...+.-....|+.+.|..+|++.......++ ...|...+.--...|+.+.+..+.+++
T Consensus 488 ~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 488 TACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666552 2455566666656666666666666666665422111 224555555555667777777777766
Q ss_pred HHhcCCCCChHHHHHHHHHH
Q 039715 572 VANYGIEPCIEHYTSMVSLL 591 (805)
Q Consensus 572 ~~~~~~~p~~~~~~~li~~~ 591 (805)
.+.+ |+......+++-|
T Consensus 568 ~~~~---P~~~~~~~f~~ry 584 (679)
T 4e6h_A 568 FEKF---PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHS---TTCCHHHHHHHHT
T ss_pred HHhC---CCCcHHHHHHHHh
Confidence 6542 4333333344444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.7e-11 Score=126.62 Aligned_cols=230 Identities=7% Similarity=-0.039 Sum_probs=158.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-CCCC----hhhHHHHHHHHhccCCchhHHHHHHHHHHcC--C----CCcHhHHH
Q 039715 415 MIVGYVQLGEVGKAMIMFSKMLEEQ-VPAT----EVTYSSVLRACASLAALEPGMQVHCLTVKAN--Y----DMDVVVAN 483 (805)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 483 (805)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+....+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3344555566666666666654421 0111 1244555555556666666666655554421 0 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCC-----C----HhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDW-----N----EVSWNAMISGYSMHGLSAEVLKVFDLMQQR----GWRPN-NLTFV 549 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 549 (805)
.+...|...|++++|.+.|++..+. + ..+|+.+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888888899999998888876521 1 247888999999999999999999988762 22243 44788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCC---HHHHHHHHHcCCCCCCH-HHHHHHHHH
Q 039715 550 GVLSACSNGGLLEQGEAYFKSMVANYGIEPC---IEHYTSMVSLLGRAGH---LDKAAKLIEGIPFQPSV-MIWRALLGA 622 (805)
Q Consensus 550 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~eA~~~~~~~~~~p~~-~~~~~l~~~ 622 (805)
.+..++...|++++|..++++..+...-..+ ...+..+..+|...|+ +++|..++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8888899999999999999987753211112 2345678888889998 89999999988644443 467788888
Q ss_pred HHHcCCHHHHHHHHHHHhccCC
Q 039715 623 CIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 623 ~~~~g~~~~a~~~~~~~~~~~p 644 (805)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=114.66 Aligned_cols=205 Identities=11% Similarity=0.043 Sum_probs=143.9
Q ss_pred ChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHH
Q 039715 443 TEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISG 519 (805)
Q Consensus 443 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 519 (805)
|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++..+ .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44566677777788888888888888888776435666666688888888888888888877652 255677778888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC---hHHHHHHH
Q 039715 520 YSMHGLSAEVLKVFDLMQQRGWRPN-N-------LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC---IEHYTSMV 588 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 588 (805)
|...|++++|+..|++..+ +.|+ . ..|..+...+...|++++|+..|+++. .+.|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 8888888888888888877 3454 2 345666667777888888888887776 45565 45677777
Q ss_pred HHHHhcCCH--HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 039715 589 SLLGRAGHL--DKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659 (805)
Q Consensus 589 ~~~~~~g~~--~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 659 (805)
.+|...|+. ++|..+. ..+...+..+. ....+.+++|+..++++++++|+++.+...|+.+...
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 777665543 3332221 12333333332 3345667999999999999999999999888877543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.5e-12 Score=129.01 Aligned_cols=235 Identities=12% Similarity=0.098 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhc-------CCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHc------C-CC
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEE-------QVPATEVTYSSVLRACASLAALEPGMQVHCLTVKA------N-YD 476 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~-~~ 476 (805)
+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. + .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444444444444444444331 11111223344444444445555554444444432 1 12
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc------
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMNDW-----------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR------ 539 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 539 (805)
....++..+...|...|++++|.+.|+++.+. ....|..+...|...|++++|++.|+++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23456667777777777777777777765421 3446777888888888888888888887763
Q ss_pred CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------CCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHH
Q 039715 540 GWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANY------GIEPC-------IEHYTSMVSLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 540 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-------~~~~~~li~~~~~~g~~~eA~~~~~ 605 (805)
+-.|+ ..++..+...+...|++++|..+++++.+.. ...+. ...+..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 22333 2356777778888888888888888877431 11111 1222333344455566666666666
Q ss_pred cCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 606 GIP-FQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 606 ~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
+.. ..| +..+|..++..|...|++++|+..+++++++.|+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 553 233 3457888999999999999999999999988774
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=125.27 Aligned_cols=218 Identities=9% Similarity=-0.016 Sum_probs=169.5
Q ss_pred HHHHHhccCCchhHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-----C-----CHhHHH
Q 039715 450 VLRACASLAALEPGMQVHCLTVKA----NYDM-DVVVANALIDMYAKCGSITDARLVFDMMND-----W-----NEVSWN 514 (805)
Q Consensus 450 ll~a~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 514 (805)
....+...|++++|...+..+.+. +-++ ...++..+...|...|++++|...+++..+ . ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455678899999999999999874 2111 346788999999999999999999887752 1 245788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---CCCC-ChHHHH
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQQRGWR-PN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANY---GIEP-CIEHYT 585 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~ 585 (805)
.+...|...|++++|+..|++..+...+ ++ ..++..+...+...|++++|..+|++..+.. +..| ....+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 9999999999999999999998763111 22 2368888889999999999999999987521 2213 356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC----C--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGIP----F--QPS-VMIWRALLGACIIHNN---VEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~~----~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
.++..|.+.|++++|.+.+++.- . .|. ...+..+...+...|+ .++|+..+++. ...|.....+..|+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 99999999999999999998651 1 222 2235667777888898 78888888777 444556678889999
Q ss_pred HHHhcCChHHHhh
Q 039715 656 IYAMARSWEKAAS 668 (805)
Q Consensus 656 ~~~~~g~~~~a~~ 668 (805)
+|...|++++|.+
T Consensus 348 ~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 348 YYHERKNFQKASA 360 (383)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHCCCHHHHHH
Confidence 9999999999976
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=126.42 Aligned_cols=224 Identities=15% Similarity=0.102 Sum_probs=160.6
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHc-------CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---------
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKA-------NYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW--------- 508 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------- 508 (805)
.++..+...+...|++++|..++..+.+. ..+....++..+...|...|++++|...|++....
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46777888899999999999999988874 33445677888999999999999999999877521
Q ss_pred --CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----
Q 039715 509 --NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR------GWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANY---- 575 (805)
Q Consensus 509 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---- 575 (805)
...+|..+...|...|++++|+..|+++.+. +-.|+ ...+..+...+...|++++|..+++.+.+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3557888999999999999999999998874 22233 3467778888999999999999999887541
Q ss_pred -CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC----------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHH
Q 039715 576 -GIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP----------FQPS-------VMIWRALLGACIIHNNVEIGRLSA 636 (805)
Q Consensus 576 -~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~----------~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~ 636 (805)
+..| ....+..++.+|.+.|++++|.+.++++- ..+. ...+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1123 34678888999999999999999987651 1111 112223333344556666777788
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 637 QHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 637 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++.+..|+.+.++..++.+|...|++++|.+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888889999999999999999999999976
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-11 Score=130.27 Aligned_cols=169 Identities=7% Similarity=0.005 Sum_probs=149.8
Q ss_pred HHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 039715 495 ITDARLVFDMMN---DWNEVSWNAMISGYSMHGLS-AEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFK 569 (805)
Q Consensus 495 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 569 (805)
+++|.+.++... ..+...|..+...|...|++ ++|++.|++.++. .|+ ...+..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666554 34788999999999999999 9999999999984 565 6688999999999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc--------CCHH
Q 039715 570 SMVANYGIEPCIEHYTSMVSLLGRA---------GHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIH--------NNVE 630 (805)
Q Consensus 570 ~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~ 630 (805)
+.. .+.|+...+..+..+|.+. |++++|++.+++. ...| +...|..++.+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 5678888999999999999 9999999999976 2334 578999999999998 9999
Q ss_pred HHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChHHHhh
Q 039715 631 IGRLSAQHILDFEP---EDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 631 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|+..++++++++| +++..|..++.+|...|++++|.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999 999999999999999999999988
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.9e-09 Score=112.27 Aligned_cols=187 Identities=12% Similarity=0.016 Sum_probs=121.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC----------C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--C--CHH
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMND----------W-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR--P--NNL 546 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~ 546 (805)
...+...|...|++++|...+++... + ....+..+...+...|++++|...+++..+.... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45566677777777777777766542 1 1235566777778888888888888887763221 1 123
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHH-----HHHHHHHhcCCHHHHHHHHHcCC-CCCC-----HHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYT-----SMVSLLGRAGHLDKAAKLIEGIP-FQPS-----VMI 615 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~eA~~~~~~~~-~~p~-----~~~ 615 (805)
++..+...+...|++++|..+++.......-......+. .++..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566666777788888888888887764321111111111 23345678888888888887662 1121 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChHHHhh
Q 039715 616 WRALLGACIIHNNVEIGRLSAQHILDFEPED------EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 616 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+..+...+...|+.++|...++++++..+.. ...+..++.+|...|++++|..
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 314 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 314 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6677777888888888888888887754321 2366777888888888888866
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.5e-11 Score=116.42 Aligned_cols=152 Identities=8% Similarity=-0.022 Sum_probs=109.3
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSM 587 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 587 (805)
|+..|..+...+...|++++|+..|++.++....++...+..+..++...|++++|+..|++..+ ..| +...|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHH
Confidence 45666677777777777777777777777754225666666666777777777777777777763 345 34567777
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCC-CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHHH
Q 039715 588 VSLLGRAGHLDKAAKLIEGI-PFQP-SV-------MIWRALLGACIIHNNVEIGRLSAQHILDFEPE--DEATHVLLSNI 656 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 656 (805)
+.+|.+.|++++|++.+++. ...| +. ..|..++..+...|++++|+..++++++++|+ ++.++..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 77777777777777777755 1223 33 45777777788888888888888888888888 78888888888
Q ss_pred HHhcCCh
Q 039715 657 YAMARSW 663 (805)
Q Consensus 657 ~~~~g~~ 663 (805)
|...|+.
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-09 Score=102.64 Aligned_cols=168 Identities=10% Similarity=-0.027 Sum_probs=135.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
...+..+...|...|++++|.+.|+++.+ .+...|..++..+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567778888999999999999998874 367788889999999999999999999998852 23556777888888
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACIIHNNVEIGR 633 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~ 633 (805)
...|++++|..+++.+.+. .+.+...+..++..|.+.|++++|.+.++++ .. ..+...|..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999988854 2335677888888888999999998888865 22 235678888888888899999999
Q ss_pred HHHHHHhccCCCCcch
Q 039715 634 LSAQHILDFEPEDEAT 649 (805)
Q Consensus 634 ~~~~~~~~~~p~~~~~ 649 (805)
..+++++++.|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999998888876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.6e-09 Score=111.96 Aligned_cols=229 Identities=8% Similarity=-0.012 Sum_probs=159.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCC-CCC----hhhHHHHHHHHhccCCchhHHHHHHHHHHcC--C---C-CcHhHHH
Q 039715 415 MIVGYVQLGEVGKAMIMFSKMLEEQV-PAT----EVTYSSVLRACASLAALEPGMQVHCLTVKAN--Y---D-MDVVVAN 483 (805)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~ 483 (805)
....+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+....+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566777777777776654211 122 2245556666667777777776666655421 0 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC-----C----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCHHHHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMND-----W----NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR----GWRPNNLTFVG 550 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ 550 (805)
.+...|...|++++|.+.|++..+ . ...+++.+...|...|++++|+..|++..+. +-+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 788888888998888888877653 1 2347788888999999999999999988761 11222457778
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCC---HHHHHHHHHcCCCCCCH-HHHHHHHHHH
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPC---IEHYTSMVSLLGRAGH---LDKAAKLIEGIPFQPSV-MIWRALLGAC 623 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~eA~~~~~~~~~~p~~-~~~~~l~~~~ 623 (805)
+..++.+.|++++|..++++..+...-.++ ...+..+...|...|+ +++|+..+++....|+. ..+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 888899999999999999988865322222 3456677777888888 89999999887644443 3667788889
Q ss_pred HHcCCHHHHHHHHHHHhccC
Q 039715 624 IIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~ 643 (805)
...|++++|...+++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-09 Score=108.76 Aligned_cols=178 Identities=12% Similarity=0.040 Sum_probs=115.5
Q ss_pred HHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh--hHHHHHHHHhccCCchhHHHHHH
Q 039715 395 ENSVELFAESPK----RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV--TYSSVLRACASLAALEPGMQVHC 468 (805)
Q Consensus 395 ~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~ 468 (805)
++|..+|++..+ .+...|..++..+.+.|++++|..+|++..+. .|+.. .|..+...+.+.|++++|..++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 556665554222 23445666666666666666666666666552 34322 45556666666666666666666
Q ss_pred HHHHcCCCCcHhHHHHHHHHHH-hcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCC
Q 039715 469 LTVKANYDMDVVVANALIDMYA-KCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG-WRP 543 (805)
Q Consensus 469 ~~~~~~~~~~~~~~~~li~~y~-~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p 543 (805)
.+++.. +.+..++...+.... ..|++++|.++|++..+ .+...|..++..+.+.|+.++|..+|++.++.. +.|
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 666544 223344444433322 35888888888887752 367788888888888888888888888888853 455
Q ss_pred C--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 039715 544 N--NLTFVGVLSACSNGGLLEQGEAYFKSMVANY 575 (805)
Q Consensus 544 ~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 575 (805)
+ ...+..++......|+.++|..+++++.+.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 3 4467777777778888899988888888653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-10 Score=104.33 Aligned_cols=156 Identities=12% Similarity=0.051 Sum_probs=136.1
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 3467788889999999999999999998742 235667888888999999999999999999854 2336788899999
Q ss_pred HHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 590 LLGRAGHLDKAAKLIEGI-P-FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 590 ~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
.|...|++++|.+.++++ . ...+...|..++..+...|++++|+..++++++..|+++..+..++.+|...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999876 2 23467889999999999999999999999999999999999999999999999999997
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
+
T Consensus 165 ~ 165 (186)
T 3as5_A 165 P 165 (186)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-10 Score=131.90 Aligned_cols=164 Identities=11% Similarity=0.106 Sum_probs=142.4
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVL 552 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 552 (805)
.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|++.|++.++ +.|+ ...+..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 3567889999999999999999999998763 3678999999999999999999999999998 5675 55889999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCH
Q 039715 553 SACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNV 629 (805)
Q Consensus 553 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 629 (805)
.++...|++++|++.|++..+ +.| +...|..++.+|.+.|++++|++.|++. ...| +...|..|+.++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999884 456 4688999999999999999999999876 3455 467899999999999999
Q ss_pred HHHHHHHHHHhccCCC
Q 039715 630 EIGRLSAQHILDFEPE 645 (805)
Q Consensus 630 ~~a~~~~~~~~~~~p~ 645 (805)
++|++.+++++++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999999886553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-09 Score=116.92 Aligned_cols=218 Identities=10% Similarity=-0.023 Sum_probs=165.3
Q ss_pred HHHHHhccCCchhHHHHHHHHHHcC--CC---CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-----C-----CHhHHH
Q 039715 450 VLRACASLAALEPGMQVHCLTVKAN--YD---MDVVVANALIDMYAKCGSITDARLVFDMMND-----W-----NEVSWN 514 (805)
Q Consensus 450 ll~a~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 514 (805)
....+...|++++|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ . ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445678899999999999988642 11 1346788899999999999999998887652 1 245788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC--CCC-ChHHHHH
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQQRGW-RPN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANYG--IEP-CIEHYTS 586 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p-~~~~~~~ 586 (805)
.+...|...|++++|++.|++..+..- .++ ..++..+...+...|++++|..+|++..+... ..| ....+..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 999999999999999999999876311 112 23677888889999999999999999876211 223 3567888
Q ss_pred HHHHHHhcCCHHHHHHHHHcC----CC--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI----PF--QPS-VMIWRALLGACIIHNN---VEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
++..|.+.|++++|.+.+++. +. .|. ...+..+...+...|+ .++|+..+++. ...|+....+..+|.+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 999999999999999999865 21 233 3345666666777888 78888777762 3344455677889999
Q ss_pred HHhcCChHHHhh
Q 039715 657 YAMARSWEKAAS 668 (805)
Q Consensus 657 ~~~~g~~~~a~~ 668 (805)
|...|++++|.+
T Consensus 346 y~~~g~~~~A~~ 357 (378)
T 3q15_A 346 FESSCHFEQAAA 357 (378)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHCCCHHHHHH
Confidence 999999999976
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-09 Score=110.97 Aligned_cols=174 Identities=7% Similarity=-0.020 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----C----HhHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC-----
Q 039715 480 VVANALIDMYAKCGSITDARLVFDMMNDW-----N----EVSWNAMISGYSMH-GLSAEVLKVFDLMQQRGWRPN----- 544 (805)
Q Consensus 480 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~----- 544 (805)
.+++.+..+|.+.|++++|...|++..+. + ..+|+.+...|... |++++|+..|++.++. .|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 34555666666666666666666555421 1 34677788888885 8888888888887762 221
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH---
Q 039715 545 --NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI-----EHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSV--- 613 (805)
Q Consensus 545 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~--- 613 (805)
..++..+...+...|++++|+.+|++..+...-.+.. ..|..++.++...|++++|...+++. .+.|+.
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2357777778888888888888888877532111111 15667777888888888888888865 333432
Q ss_pred ---HHHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 614 ---MIWRALLGACI--IHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 614 ---~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
..+..++.++. ..+++++|+..++++++++|.....+..+-.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 13444555554 3467888888888888888866554444433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.09 E-value=9.1e-09 Score=109.42 Aligned_cols=230 Identities=6% Similarity=-0.043 Sum_probs=141.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCC-CCh----hhHHHHHHHHhccCCchhHHHHHHHHHHc----CCC--C-cH
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLEEQVP-ATE----VTYSSVLRACASLAALEPGMQVHCLTVKA----NYD--M-DV 479 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 479 (805)
++.+...|...|++++|...+++....... ++. .++..+...+...|++++|...+....+. +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 344444555555555555555554431100 111 12334444555566666666655554432 211 2 23
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhcCC--C------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHH-
Q 039715 480 VVANALIDMYAKCGSITDARLVFDMMND--W------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN-LTFV- 549 (805)
Q Consensus 480 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~- 549 (805)
..+..+...|...|++++|...+++... + ...+|..+...+...|++++|...+++.....-.++. ..+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 4556677778888888888888876541 1 2346777888888889999999999888764222221 1111
Q ss_pred ----HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCCH
Q 039715 550 ----GVLSACSNGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPSV 613 (805)
Q Consensus 550 ----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~~ 613 (805)
..+..+...|++++|..+++.... ..|. ...+..+..++...|++++|.+.+++. +..++.
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 292 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAK---PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCC---CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCC---CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH
Confidence 223346688999999998887663 2221 234667788888999999999888765 111122
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 614 -MIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 614 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
..+..+..++...|+.++|...+++++++.+
T Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 2566677778889999999999999887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-09 Score=109.26 Aligned_cols=195 Identities=8% Similarity=-0.024 Sum_probs=144.3
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---------CHhHHHHHHHHHHhCCChHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---------NEVSWNAMISGYSMHGLSAEV 529 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A 529 (805)
++++|...+..+ ...|...|++++|.+.|++...- ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467777766655 45688899999999998876531 146899999999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHH
Q 039715 530 LKVFDLMQQRGWR-PN----NLTFVGVLSACSNG-GLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDK 599 (805)
Q Consensus 530 ~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~e 599 (805)
+..|++.++.... .+ ..++..+..++... |++++|+..|++..+.+.-..+ ..++..++..|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999998763111 11 34788888899996 9999999999998854211111 3568889999999999999
Q ss_pred HHHHHHcC----CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHH--hcCCh
Q 039715 600 AAKLIEGI----PFQPSV-----MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT-----HVLLSNIYA--MARSW 663 (805)
Q Consensus 600 A~~~~~~~----~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 663 (805)
|++.+++. |-.++. ..|..++.++...|++++|+..++++++++|+.... +..|+..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999865 212221 257788888999999999999999999999976653 344566665 56789
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
++|.+
T Consensus 257 ~~A~~ 261 (292)
T 1qqe_A 257 SEHCK 261 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99887
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-09 Score=105.42 Aligned_cols=191 Identities=13% Similarity=0.033 Sum_probs=137.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---C---HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMNDW---N---EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW-RPN-NLTFV 549 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 549 (805)
+...+-.+...+.+.|++++|...|+++.+. + ...|..+..+|.+.|++++|+..|++.++... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4555666677777788888888888877632 3 55677777888888888888888888877421 112 23455
Q ss_pred HHHHHHHc--------CCCHHHHHHHHHHHHHhcCCCCChH-H--------------HHHHHHHHHhcCCHHHHHHHHHc
Q 039715 550 GVLSACSN--------GGLLEQGEAYFKSMVANYGIEPCIE-H--------------YTSMVSLLGRAGHLDKAAKLIEG 606 (805)
Q Consensus 550 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~-~--------------~~~li~~~~~~g~~~eA~~~~~~ 606 (805)
.+..++.. .|++++|+..|+++.+.+.-.+... . +..++..|.+.|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 56666666 7888888888888876532222211 1 15668889999999999999987
Q ss_pred C----CCCC-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCChHHHhh
Q 039715 607 I----PFQP-SVMIWRALLGACIIH----------NNVEIGRLSAQHILDFEPEDE---ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 607 ~----~~~p-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+ |..+ ....|..++.+|... |++++|+..++++++..|+++ .+...+..++...|+++++..
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 6 3222 235677888888766 899999999999999999986 456678888888888877654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-10 Score=105.30 Aligned_cols=139 Identities=6% Similarity=-0.049 Sum_probs=91.2
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC
Q 039715 519 GYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH 596 (805)
Q Consensus 519 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 596 (805)
.+...|+.++|++.+++... ..|+ ...+..+...|...|++++|+..|++..+ +.| +...|..++.+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 33444555555555555443 2232 22344455555666666666666666553 234 34566666666666666
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 597 LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLS-AQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 597 ~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
+++|+..|++. ...| +...|..++..|...|+.++|.+. ++++++++|+++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666666644 2344 467888899999999998776655 699999999999999999999998885
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-09 Score=108.54 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=75.1
Q ss_pred HHcCChHHHHHHHHHHhhc-----C-CCC-ChhhHHHHHHHHhccCCchhHHHHHHHHHHc------CC-CCcHhHHHHH
Q 039715 420 VQLGEVGKAMIMFSKMLEE-----Q-VPA-TEVTYSSVLRACASLAALEPGMQVHCLTVKA------NY-DMDVVVANAL 485 (805)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 485 (805)
...|++++|+.+|++..+. + -.| ...++..+...+...|++++|...+..+++. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666777777666541 0 011 1224445555555556666666555555443 11 1123445555
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCC-----------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HHH
Q 039715 486 IDMYAKCGSITDARLVFDMMNDW-----------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR------GWRPN-NLT 547 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t 547 (805)
...|...|++++|.+.|++.... ...+|..+...|...|++++|+..|+++.+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55555555555555555544311 1334555555555555555555555555442 10221 224
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMV 572 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~ 572 (805)
+..+...+...|++++|..+++.+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-08 Score=100.70 Aligned_cols=191 Identities=8% Similarity=-0.009 Sum_probs=147.1
Q ss_pred CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-h
Q 039715 507 DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-I 581 (805)
Q Consensus 507 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 581 (805)
..+...+-.+...+.+.|++++|+..|+++++. .|+ ...+..+..++...|++++|...|+.+.+.+.-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 346778888899999999999999999999984 454 457788888999999999999999999976433333 4
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHcC-CCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHH
Q 039715 582 EHYTSMVSLLGR--------AGHLDKAAKLIEGI-PFQPS-VMIW-----------------RALLGACIIHNNVEIGRL 634 (805)
Q Consensus 582 ~~~~~li~~~~~--------~g~~~eA~~~~~~~-~~~p~-~~~~-----------------~~l~~~~~~~g~~~~a~~ 634 (805)
..+..++..|.+ .|++++|+..|+++ ...|+ ...+ ..++..|...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567788899998 99999999999876 12232 2233 556788999999999999
Q ss_pred HHHHHhccCCCC---cchHHHHHHHHHhc----------CChHHHhhcCCCCceEEECCeEEEEeeCCCCCccHHHHHHH
Q 039715 635 SAQHILDFEPED---EATHVLLSNIYAMA----------RSWEKAASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGM 701 (805)
Q Consensus 635 ~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~ 701 (805)
.++++++..|++ +.++..++.+|... |++++|..... ..+..++.+|...+....
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~------------~~~~~~p~~~~~~~a~~~ 237 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE------------RLLQIFPDSPLLRTAEEL 237 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH------------HHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH------------HHHHHCCCChHHHHHHHH
Confidence 999999999985 45889999999977 88899987000 001112345666777777
Q ss_pred HHHHHHHHHH
Q 039715 702 LEWLNMKSRK 711 (805)
Q Consensus 702 l~~l~~~~~~ 711 (805)
+..+...+.+
T Consensus 238 l~~~~~~~~~ 247 (261)
T 3qky_A 238 YTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-08 Score=102.34 Aligned_cols=223 Identities=9% Similarity=0.024 Sum_probs=143.3
Q ss_pred hcCChHHHHHHHhc-------CCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHhhc------CCCCC-hhhHHHHH
Q 039715 390 KCGRMENSVELFAE-------SPKR----NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE------QVPAT-EVTYSSVL 451 (805)
Q Consensus 390 ~~g~~~~A~~~f~~-------~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll 451 (805)
..|++++|...|++ ...+ ...+|..+...|...|++++|+..|++..+. +-.|. ..++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555543 3222 3457888999999999999999999998764 22233 34778888
Q ss_pred HHHhccCCchhHHHHHHHHHHc------C-CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----------CHhHH
Q 039715 452 RACASLAALEPGMQVHCLTVKA------N-YDMDVVVANALIDMYAKCGSITDARLVFDMMNDW-----------NEVSW 513 (805)
Q Consensus 452 ~a~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~ 513 (805)
..+...|++++|...+..+.+. . .+....++..+...|...|++++|...|++..+. ...+|
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8999999999999999888765 1 1334677888999999999999999999877532 34578
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC-------CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHH
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQRG-------WRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYT 585 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~g-------~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 585 (805)
..+...|...|++++|+..|+++.+.. ..|... .+..+.......+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 227 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK------------------------- 227 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC-------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc-------------------------
Confidence 888999999999999999999987631 111111 11111111111110
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGIP-FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDF 642 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 642 (805)
+.....+.++...++... ..|+ ..+|..++..|...|++++|+..+++++++
T Consensus 228 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 228 -----RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -----CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -----hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 011223344444555443 2232 346777888888888888888888888765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.1e-09 Score=119.81 Aligned_cols=167 Identities=10% Similarity=-0.065 Sum_probs=94.9
Q ss_pred HhcCCHHHHHHHhhhcC-----------CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 039715 490 AKCGSITDARLVFDMMN-----------DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSN 557 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 557 (805)
...|++++|++.|++.. ..+...|..+...|.+.|++++|++.|+++.+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 44555555555555544 224445555666666666666666666666652 343 3355555555666
Q ss_pred CCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRL 634 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 634 (805)
.|++++|...|+++.+ +.| +...|..+..+|.+.|++++ ++.|+++ ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666553 234 34555666666666666666 6555544 2223 34566666666666666666666
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 635 SAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 635 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
.++++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6666666666666666666666655443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-08 Score=96.64 Aligned_cols=163 Identities=10% Similarity=0.035 Sum_probs=119.4
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCC---CHhHHHH----------------HHHHHHhCCChHHHHHHHHHHHHcCCCCC-H
Q 039715 486 IDMYAKCGSITDARLVFDMMNDW---NEVSWNA----------------MISGYSMHGLSAEVLKVFDLMQQRGWRPN-N 545 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 545 (805)
...+...|++++|...|++..+. +...|.. +...|...|++++|+..|++.++ +.|+ .
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 33455566666666666665432 2334444 88999999999999999999999 4564 5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC--HHHHHHHHHcCCCCCCH--HHHHHHH
Q 039715 546 LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH--LDKAAKLIEGIPFQPSV--MIWRALL 620 (805)
Q Consensus 546 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~--~~eA~~~~~~~~~~p~~--~~~~~l~ 620 (805)
..+..+..++...|++++|...|+++.+ +.| +...+..++..|...|. .+++...+++.. .|+. ..|..++
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 6788888999999999999999999985 456 57788899988876654 455667777664 4444 3456667
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
.++...|++++|+..+++++++.|+. .....|..
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDK 198 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 77888999999999999999999964 33333443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-07 Score=93.89 Aligned_cols=240 Identities=8% Similarity=-0.003 Sum_probs=155.8
Q ss_pred HhcCChHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHH
Q 039715 389 AKCGRMENSVELFAESPKRNH-VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVH 467 (805)
Q Consensus 389 ~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 467 (805)
.-.|.+..++.-...+...+. ..-.-+.++|...|+++.. ..-.|....+..+. .|...+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHHH
Confidence 345777777665555443222 2223345677777766531 11223322332222 222222 55666
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 039715 468 CLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND-----WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR 542 (805)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 542 (805)
+.....+ .++......+..+|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 6666554 34445556788888889999999999988743 2456777788889999999999999999988 56
Q ss_pred C-----CHHHHHHHHHHH--Hc--CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCC-C---
Q 039715 543 P-----NNLTFVGVLSAC--SN--GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP-F--- 609 (805)
Q Consensus 543 p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~--- 609 (805)
| +..+...+..++ .. .++..+|..+|+++.++ .|+......+..++.+.|++++|.+.++.+. .
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 356666666552 22 34899999999998754 3553333334447889999999999987542 1
Q ss_pred -------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 039715 610 -------QP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 610 -------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
.| |+.+.-.++......|+ +|.+.++++.+..|+++-..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 14 45566677767677787 88999999999999886543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=102.92 Aligned_cols=165 Identities=11% Similarity=-0.070 Sum_probs=126.2
Q ss_pred HHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Q 039715 499 RLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI 577 (805)
Q Consensus 499 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 577 (805)
.+.+......+...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++...|++++|...++.+.. .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~ 180 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---Q 180 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---h
Confidence 3344444444556677777888888889999999988888 4564 45777788888888999999998888763 3
Q ss_pred CCChHHHHHH-HHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--cchHHH
Q 039715 578 EPCIEHYTSM-VSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPED--EATHVL 652 (805)
Q Consensus 578 ~p~~~~~~~l-i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~ 652 (805)
.|+....... ...+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..++..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 5655433332 23366777788888877755 2234 57789999999999999999999999999999988 889999
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
|+.+|...|+.++|..
T Consensus 261 l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 261 FQEILAALGTGDALAS 276 (287)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHHcCCCCcHHH
Confidence 9999999999999865
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-07 Score=95.33 Aligned_cols=228 Identities=7% Similarity=-0.061 Sum_probs=157.6
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 039715 419 YVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDA 498 (805)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 498 (805)
..-.|++..++.-..++.. ..+......+.+++..+|+.+... .-.|.......+. .|...+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT----C
T ss_pred HHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc----H
Confidence 3447888888874433321 222234445567777777766421 1223333333333 333433 6
Q ss_pred HHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 039715 499 RLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVAN 574 (805)
Q Consensus 499 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 574 (805)
...|++... ++..++..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~- 164 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN- 164 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 777777653 4566677888999999999999999999877553233 44677888889999999999999999984
Q ss_pred cCCCC-----ChHHHHHHHHH--HHhcC--CHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--
Q 039715 575 YGIEP-----CIEHYTSMVSL--LGRAG--HLDKAAKLIEGIP-FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDF-- 642 (805)
Q Consensus 575 ~~~~p-----~~~~~~~li~~--~~~~g--~~~eA~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 642 (805)
..| +..+...|..+ ....| ++++|..+|+++. ..|+...-..+++++...|++++|+..++.+++.
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 456 24444555544 33334 9999999999883 3455333344455888999999999999988887
Q ss_pred --------CCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 643 --------EPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 643 --------~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|+++.++..++.+....|+ +|.+
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~ 274 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTED 274 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHH
Confidence 58899999899888888897 5554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-08 Score=85.47 Aligned_cols=131 Identities=14% Similarity=0.212 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLL 591 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 591 (805)
.|..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.... ..+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677777777888888888888877743 2245566677777777888888888888877541 23456677778888
Q ss_pred HhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 592 GRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
.+.|++++|.+.++++ .. ..+...|..++..+...|++++|...++++++..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888887765 11 235677888888888888999999888888888875
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.5e-08 Score=100.81 Aligned_cols=219 Identities=9% Similarity=-0.018 Sum_probs=150.7
Q ss_pred cCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 039715 422 LGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLV 501 (805)
Q Consensus 422 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 501 (805)
.|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4567778887777654311 10 0 11135566666555443 4567778888888888
Q ss_pred hhhcCCC-----C----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHcCCCHHHHHHH
Q 039715 502 FDMMNDW-----N----EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW---RPN--NLTFVGVLSACSNGGLLEQGEAY 567 (805)
Q Consensus 502 ~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~ 567 (805)
|.+..+- + ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+..+|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8766521 1 44788889999999999999999998776311 122 2467778888888 999999999
Q ss_pred HHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 039715 568 FKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS----VMIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 568 ~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
|++..+.+.-..+ ...+..+..+|.+.|++++|++.+++. +..++ ...|..++..+...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988754311111 467888999999999999999999865 11122 23677777778888999999999
Q ss_pred HHHHhccCCCCcch-----HHHHHHHHHhcCChHHHhh
Q 039715 636 AQHILDFEPEDEAT-----HVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 636 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 668 (805)
+++++ +.|+.... ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33455555 5666655543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-08 Score=113.72 Aligned_cols=203 Identities=10% Similarity=0.074 Sum_probs=154.8
Q ss_pred hccCCchhHHHHHHHHH--------HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhC
Q 039715 455 ASLAALEPGMQVHCLTV--------KANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMH 523 (805)
Q Consensus 455 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 523 (805)
...|++++|.+.++.++ +.. +.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677777777777766 322 44567788888999999999999999998873 4778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 039715 524 GLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAA 601 (805)
Q Consensus 524 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~ 601 (805)
|++++|++.|++.++ +.|+ ...+..+..++...|++++ +..|+++.+. .| +...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998 4564 5678888889999999999 9999998853 56 5678999999999999999999
Q ss_pred HHHHcC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 602 KLIEGI-PFQPS-VMIWRALLGACIIHNN-----VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 602 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
+.++++ ...|+ ...|..+..++...|+ .+...++.+.+.++.++++..+..-..++..+-.|-
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~ll~~~l~~~ 624 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLGGALDWL 624 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999987 46676 4578888888766555 344555556666666766666655555555444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9.6e-08 Score=93.29 Aligned_cols=170 Identities=11% Similarity=-0.021 Sum_probs=107.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH----HH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMND--WN----EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL----TF 548 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 548 (805)
...+..+...+.+.|++++|...|+++.+ |+ ...+..++.+|.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455666778888888888888887763 21 346777788888888888888888888874 44422 33
Q ss_pred HHHHHHHHc------------------CCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 039715 549 VGVLSACSN------------------GGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAAKLIEGIPF 609 (805)
Q Consensus 549 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~ 609 (805)
..+..++.. .|+.++|...|+.+.+. .|+. ..+.++..+. .+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH--------
Confidence 334444432 45666666666666633 2322 1111111000 000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCChHHHhh
Q 039715 610 QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE---ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 668 (805)
......++..+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 00113455667888999999999999999988875 568888999999999998876
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-08 Score=86.48 Aligned_cols=114 Identities=10% Similarity=0.069 Sum_probs=86.2
Q ss_pred CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHH
Q 039715 541 WRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIW 616 (805)
Q Consensus 541 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~ 616 (805)
+.|+.. .+......+.+.|++++|+..|++.++. .| +...|..++.+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 445432 4556666777777777777777776643 34 4667777777777777777777777754 2234 56789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
..++.++...|++++|+..++++++++|+++.++..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999998888753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.6e-09 Score=95.27 Aligned_cols=114 Identities=13% Similarity=-0.012 Sum_probs=96.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 628 (805)
...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|++.|++. ...| +...|..++..|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344566788999999888765 34553 455667899999999999999999976 3445 57899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++|+..++++++++|+++.++..++.+|...|++++|.+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999999999999999999999988765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-07 Score=107.15 Aligned_cols=158 Identities=11% Similarity=-0.009 Sum_probs=119.9
Q ss_pred cCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHH
Q 039715 492 CGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAY 567 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 567 (805)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3678888888887763 2577888899999999999999999999988 4564 55788888889999999999999
Q ss_pred HHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhc
Q 039715 568 FKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIH---NNVEIGRLSAQHILD 641 (805)
Q Consensus 568 ~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 641 (805)
+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998854 45 5678889999999999999999999876 2234 567889999999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 039715 642 FEPEDEATHVLLS 654 (805)
Q Consensus 642 ~~p~~~~~~~~l~ 654 (805)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888887665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-07 Score=91.76 Aligned_cols=185 Identities=10% Similarity=-0.098 Sum_probs=134.0
Q ss_pred hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CH---hHHHH
Q 039715 444 EVTYSSVLRACASLAALEPGMQVHCLTVKANYDM--DVVVANALIDMYAKCGSITDARLVFDMMND--W-NE---VSWNA 515 (805)
Q Consensus 444 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~ 515 (805)
...+..+...+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++..+ | +. ..|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445566778899999999999999999865322 246788899999999999999999999863 2 22 25556
Q ss_pred HHHHHHh------------------CCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Q 039715 516 MISGYSM------------------HGLSAEVLKVFDLMQQRGWRPNNLT-FVGVLSACSNGGLLEQGEAYFKSMVANYG 576 (805)
Q Consensus 516 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 576 (805)
+..++.. .|++++|+..|+++++ ..|+... ..... . ...+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~----~------l~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATK----R------LVFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHH----H------HHHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHH----H------HHHHHHHH-----
Confidence 6666654 5789999999999998 4576432 11110 0 00011111
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 577 IEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 577 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
......++..|.+.|++++|+..|+++ ...|+ ...+..++.++...|+.++|+..++++....|++..+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 112235678899999999999999876 22333 2468889999999999999999999999999987654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.73 E-value=7.8e-06 Score=89.56 Aligned_cols=125 Identities=9% Similarity=0.045 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhc-cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACAS-LAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
..|...+....+.+..+.|..+|.+. .. ...+...|......-.. .++.+.|..+++..++.. +.++..+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45777777777778899999999988 32 11222233221111112 236889999999888764 3345556677888
Q ss_pred HHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 489 YAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
..+.|+.+.|+.+|+++. +....|...+.--..+|+.+.+.++++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999984 3567788877777777888888887777764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.6e-08 Score=88.24 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=77.9
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 576 GIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 576 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
.+.| +...+..+...|.+.|++++|++.|+++ ...| +...|..++.+|...|++++|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4455 3466777888888888888888888866 2344 57789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
+|.+|...|++++|.+
T Consensus 110 lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKE 125 (151)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 9999999999999977
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.2e-07 Score=87.70 Aligned_cols=142 Identities=8% Similarity=-0.070 Sum_probs=64.8
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhcCCCCChHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGG----LLEQGEAYFKSMVANYGIEPCIEHY 584 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~~ 584 (805)
++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|..+|++..+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 33344444444444444444444444444432 23333333333333 3 445555555444321 133344
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHcCC-CCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 585 TSMVSLLGR----AGHLDKAAKLIEGIP-FQPS---VMIWRALLGACII----HNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 585 ~~li~~~~~----~g~~~eA~~~~~~~~-~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
..|..+|.. .+++++|.+++++.- ..|. +..+..|...|.. .++.++|+..++++.++ |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 444444444 445555555555432 1221 4445555555554 44555555555555555 444455555
Q ss_pred HHHHHHh
Q 039715 653 LSNIYAM 659 (805)
Q Consensus 653 l~~~~~~ 659 (805)
|+.+|..
T Consensus 168 Lg~~y~~ 174 (212)
T 3rjv_A 168 AGMMFQQ 174 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-07 Score=80.63 Aligned_cols=128 Identities=13% Similarity=0.246 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYA 490 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 490 (805)
.|..+...|...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...+..+.+.+ +.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~------------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR------------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT-------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CC-------------
Confidence 45666667777777777777777766542 1122333333444444444444444444443332 12
Q ss_pred hcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 039715 491 KCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKS 570 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 570 (805)
+...|..++..+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.
T Consensus 68 ------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 68 ------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp ------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 33344444555555555555555555555431 12333444455555555555555555555
Q ss_pred HH
Q 039715 571 MV 572 (805)
Q Consensus 571 m~ 572 (805)
+.
T Consensus 129 ~~ 130 (136)
T 2fo7_A 129 AL 130 (136)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.6e-08 Score=89.89 Aligned_cols=150 Identities=10% Similarity=-0.035 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSA--CS 556 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~ 556 (805)
...+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+.. +..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHHH
Confidence 34455666777777777777777663 25566777777777777777777777776653 34322 2221111 11
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039715 557 NGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSA 636 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 636 (805)
..+...++...+++..+. .| .+...|..+...+...|++++|+..+
T Consensus 86 ~~~~~~~a~~~~~~al~~---~P-------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA---NP-------------------------------DNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH---ST-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHh---CC-------------------------------CCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 111111233333333321 22 23455556666666666666666666
Q ss_pred HHHhccCCCC--cchHHHHHHHHHhcCChHHHhh
Q 039715 637 QHILDFEPED--EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 637 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++++.+|+. +..+..++.+|...|+.++|..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 6666666543 3356666666666666666543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=107.11 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=109.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHH
Q 039715 523 HGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA 600 (805)
.|++++|++.|++..+ ..|+ ...+..+...+...|++++|...|++.. .+.| +...+..++.+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4789999999999988 4565 5678888889999999999999999988 4566 478899999999999999999
Q ss_pred HHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc---CChHHHhh
Q 039715 601 AKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA---RSWEKAAS 668 (805)
Q Consensus 601 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~ 668 (805)
.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|... |++++|.+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 9999876 2334 5778999999999999999999999999999999999999999999999 99988887
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.9e-07 Score=86.15 Aligned_cols=173 Identities=7% Similarity=-0.108 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-CHhHHHHHHHHHHhCC----ChHHHHHHHHHH
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW-NEVSWNAMISGYSMHG----LSAEVLKVFDLM 536 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m 536 (805)
+|.+.+....+.| ++..+..|..+|...+++++|.+.|++..+. +..++..|...|.. + ++++|+..|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4556666666654 6677888888888889999999999887644 77788888888887 6 899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHh----cCCHHHHHHHHH
Q 039715 537 QQRGWRPNNLTFVGVLSACSN----GGLLEQGEAYFKSMVANYGIEPC---IEHYTSMVSLLGR----AGHLDKAAKLIE 605 (805)
Q Consensus 537 ~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~eA~~~~~ 605 (805)
.+.| +...+..+...+.. .+++++|..+|++..+ ..|. +..+..|..+|.. .+++++|..+|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8754 55677777777776 7899999999988773 3453 6788889999988 889999999998
Q ss_pred cCC-CCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhccCC
Q 039715 606 GIP-FQPSVMIWRALLGACIIH-N-----NVEIGRLSAQHILDFEP 644 (805)
Q Consensus 606 ~~~-~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 644 (805)
+.- ..++...+..|...|... | +.++|+..++++.+..+
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 762 224566777888777653 3 89999999999998764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-07 Score=87.75 Aligned_cols=118 Identities=12% Similarity=0.007 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCCCHHHHHHHHHH-HH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP-FQPSVMIWRALLGA-CI 624 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~l~~~-~~ 624 (805)
+......+...|++++|...|+...+. .| +...+..+..+|.+.|++++|+..++++. ..|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 445556677889999999998887643 45 56788888999999999999999998873 34544433332222 22
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..++..+|+..++++++++|+++..+..++.+|...|++++|.+
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 129 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE 129 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 22333457999999999999999999999999999999999988
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-08 Score=86.76 Aligned_cols=93 Identities=10% Similarity=0.080 Sum_probs=84.1
Q ss_pred CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 576 GIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 576 ~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
-+.|+ ...+...+..|.+.|++++|++.|++. ...| +...|..++.++...|++++|+..++++++++|+++.+|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 36675 467888999999999999999999876 3344 67899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
+|.+|...|++++|.+
T Consensus 87 lg~~~~~~~~~~~A~~ 102 (126)
T 4gco_A 87 KAACLVAMREWSKAQR 102 (126)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHH
Confidence 9999999999999988
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=97.64 Aligned_cols=191 Identities=8% Similarity=-0.039 Sum_probs=145.2
Q ss_pred ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHH
Q 039715 456 SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDL 535 (805)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 535 (805)
..|++++|.+++.+..+.... . .+...+++++|...|.+ .+..|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356778888888877764211 1 11115888999888765 36678899999999999999
Q ss_pred HHHcCC---CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC--C--ChHHHHHHHHHHHhcCCHHHHHHHHHc
Q 039715 536 MQQRGW---RPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIE--P--CIEHYTSMVSLLGRAGHLDKAAKLIEG 606 (805)
Q Consensus 536 m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~li~~~~~~g~~~eA~~~~~~ 606 (805)
..+... .+. ..+|..+...|...|++++|+..|++..+.+.-. | ...++..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876321 111 3378888889999999999999999887543211 1 14678889999998 999999999986
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCChHHHhh
Q 039715 607 I----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE------ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 607 ~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~ 668 (805)
. +...+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.+|...|++++|.+
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5 11111 35788999999999999999999999999877554 367778889999999999988
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=9.6e-06 Score=88.84 Aligned_cols=346 Identities=11% Similarity=0.016 Sum_probs=194.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCC-hHHHHHHHhhCCC------CCcccHHHHHHHHH----hCCCh
Q 039715 256 DTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGE-ISNARRIFEEMPK------KDVIPWSFMIARYA----QTDLS 324 (805)
Q Consensus 256 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~~~~------~~~~~~~~li~~~~----~~g~~ 324 (805)
++.+.+.++|+..++. .|+...|...+....+.++ .+....+|+.... .+...|...+.-+. .+++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7888888888888875 4577788887776666553 3445555554321 23445666665543 23566
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHH---hccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 039715 325 IDAVELFCRMRQAFVAPNQFTFVSVLQAC---ATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELF 401 (805)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 401 (805)
+.+..+|++.+.. ++.. +..+-..| ....+...+..+..... +.+..|+.++
T Consensus 106 ~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y 160 (493)
T 2uy1_A 106 EKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGKKIVGDTL---------------------PIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHHHHHHHHh---------------------HHHHHHHHHH
Confidence 7777888887763 1111 11222221 11111112222211110 1112222222
Q ss_pred hcCC----CCChhhHHHHHHHHHHcCC-------hHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHH
Q 039715 402 AESP----KRNHVTWNTMIVGYVQLGE-------VGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLT 470 (805)
Q Consensus 402 ~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 470 (805)
+.+. ..+...|...+.--..++. .+.+..+|++++... +-+...|...+.-+.+.|+++.|..+++..
T Consensus 161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111 1133355554443222110 234556677766542 233445555555566677777777777777
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCCHHHH-HHHhhhcC------------CCCHhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039715 471 VKANYDMDVVVANALIDMYAKCGSITDA-RLVFDMMN------------DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQ 537 (805)
Q Consensus 471 ~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 537 (805)
++. +.+...+.. |+...+.++. ..+.+... ......|-..+..+.+++..+.|..+|++.
T Consensus 240 i~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A- 312 (493)
T 2uy1_A 240 IEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL- 312 (493)
T ss_dssp HHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-
T ss_pred HhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 776 333333322 2221111111 11111110 112346777777777788899999999999
Q ss_pred HcCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHH
Q 039715 538 QRGWRPNNLTFVGVLSAC-SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIW 616 (805)
Q Consensus 538 ~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~ 616 (805)
.. ..++...|......- ...++.+.|+.+|+...+.++- ++..+...++...+.|+.+.|..+|+++. .....|
T Consensus 313 ~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw 387 (493)
T 2uy1_A 313 GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMW 387 (493)
T ss_dssp TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHH
T ss_pred hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHH
Confidence 32 122333443322221 1234699999999999977532 34566778888899999999999999985 467889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
...+.--..+|+.+.+..+++++.+
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999988899999999998888875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.5e-06 Score=83.32 Aligned_cols=224 Identities=10% Similarity=0.019 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccC--CchhHHHHHHHHHHcCCCCcHhHHHHHHHHH----Hhc---CC
Q 039715 425 VGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLA--ALEPGMQVHCLTVKANYDMDVVVANALIDMY----AKC---GS 494 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~---g~ 494 (805)
.++|+.++.+++.. .|+.. .++.--..+...+ .++++...+..++..+ +.+..+|+.-...+ .+. ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 34566666666553 34433 2344444444555 6666666666666654 23344444443333 444 77
Q ss_pred HHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC------HHH
Q 039715 495 ITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSA--EVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGL------LEQ 563 (805)
Q Consensus 495 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~ 563 (805)
+++++++++++. .+|-.+|+--.-.+.+.|+++ ++++.++++++... -|...+..-.....+.|. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 888999888886 357788888888888889888 99999999998542 255566666666677776 889
Q ss_pred HHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHH-HHHHHHcCC-C----CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039715 564 GEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDK-AAKLIEGIP-F----QPSVMIWRALLGACIIHNNVEIGRLSA 636 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~e-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~g~~~~a~~~~ 636 (805)
++++++.++.. .| |...|+.+..++.+.|+..+ +.++.++.- . ..++..+..++..|.+.|+.++|++++
T Consensus 205 El~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999988854 45 67788888889999888554 556777652 1 246788999999999999999999999
Q ss_pred HHHhc-cCCCCcchHHHHHH
Q 039715 637 QHILD-FEPEDEATHVLLSN 655 (805)
Q Consensus 637 ~~~~~-~~p~~~~~~~~l~~ 655 (805)
+.+.+ ++|-....+...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99996 89988887776554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-06 Score=84.23 Aligned_cols=146 Identities=9% Similarity=-0.077 Sum_probs=102.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCC
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGL 560 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 560 (805)
+..+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..+. .| +...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 4456667778888888888888887777788888888888888888888888888774 34 44567777777778888
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039715 561 LEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPS-VMIWRALLGACIIHNNVEIGRLSAQHI 639 (805)
Q Consensus 561 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 639 (805)
+++|...|+.+.+. .|+.... .+...| +...|+ ...|..++.++...|++++|+..++++
T Consensus 87 ~~~A~~~~~~al~~---~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ---LRGNQLI-----DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHT---TTTCSEE-----ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCccHH-----HHHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888777643 2211000 000000 012333 357888888889999999999999999
Q ss_pred hccCCCCcc
Q 039715 640 LDFEPEDEA 648 (805)
Q Consensus 640 ~~~~p~~~~ 648 (805)
+++.|++..
T Consensus 148 l~~~p~~~~ 156 (213)
T 1hh8_A 148 TSMKSEPRH 156 (213)
T ss_dssp HTTCCSGGG
T ss_pred HHcCccccc
Confidence 999987644
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.5e-07 Score=86.06 Aligned_cols=186 Identities=12% Similarity=0.039 Sum_probs=120.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK 491 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 491 (805)
+-.....+.+.|++++|+..|++..+. .|+........ . ... .........+.+...|.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~---~~~--------------~~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-N---VDK--------------NSEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-H---SCT--------------TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-h---hcc--------------hhhhhHHHHHHHHHHHHH
Confidence 344455677888888888888888764 34332111110 0 000 001122344557888899
Q ss_pred cCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCC--HHHHH
Q 039715 492 CGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGL--LEQGE 565 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~ 565 (805)
.|++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999988763 3678889999999999999999999999988 4665 4567777777655543 33445
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHH
Q 039715 566 AYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGA 622 (805)
Q Consensus 566 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~ 622 (805)
..++... ...|....+..+...+...|++++|+..|++. ...|+......+...
T Consensus 145 ~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 145 TDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5554433 22232334445566777789999999999865 567887666655443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-06 Score=84.21 Aligned_cols=115 Identities=9% Similarity=0.016 Sum_probs=88.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHc
Q 039715 549 VGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIH 626 (805)
Q Consensus 549 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~ 626 (805)
..+...+...|++++|...|++. +.|+...+..++..|.+.|++++|++.+++. ... .+...|..++..+...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 33444555666666666666543 3456666677777777777777777776654 122 3567889999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCc----------------chHHHHHHHHHhcCChHHHhh
Q 039715 627 NNVEIGRLSAQHILDFEPEDE----------------ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 627 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|++++|+..+++++++.|++. ..+..++.+|...|++++|.+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 142 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999998877 899999999999999999988
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.5e-07 Score=91.39 Aligned_cols=156 Identities=9% Similarity=-0.069 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC--CCC--h
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN-----LTFVGVLSACSNGGLLEQGEAYFKSMVANYGI--EPC--I 581 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~ 581 (805)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788899999999999888874322111 12334555677888999999999888743211 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCC----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------C
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGIP----FQPS-----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPE------D 646 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~ 646 (805)
..|+.++..|...|++++|.+.++++- ..|+ ..++..++..|...|++++|+..+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578889999999999999999887651 1222 258899999999999999999999999987542 1
Q ss_pred cchHHHHHHHHHhcCChHHH
Q 039715 647 EATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 647 ~~~~~~l~~~~~~~g~~~~a 666 (805)
..+|..+|.+|...|++++|
T Consensus 236 ~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHH
Confidence 56788999999999999999
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=8.1e-08 Score=86.65 Aligned_cols=93 Identities=10% Similarity=0.035 Sum_probs=75.8
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 576 GIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 576 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
.+.| +...+..++..+.+.|++++|...|++. ...| +...|..++.+|...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4455 3456677788888888888888888765 2234 67788888888999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
+|.+|...|++++|.+
T Consensus 95 lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 95 AAECLLQXGELAEAES 110 (148)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 9999999999999877
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-06 Score=86.30 Aligned_cols=153 Identities=9% Similarity=-0.080 Sum_probs=112.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHH
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGW-RPNNL----TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTS 586 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 586 (805)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|+.+.....-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888889999988888877321 12211 2334555667778899999999888853222223 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHcCC-------C-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHH
Q 039715 587 MVSLLGRAGHLDKAAKLIEGIP-------F-QPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED------EATHV 651 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~~-------~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 651 (805)
++..|.+.|++++|.+.++++- . .+. ..++..++..|...|++++|+..+++++++.++. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999988887651 1 122 2478999999999999999999999999876533 56889
Q ss_pred HHHHHHHhcCC-hHHHhh
Q 039715 652 LLSNIYAMARS-WEKAAS 668 (805)
Q Consensus 652 ~l~~~~~~~g~-~~~a~~ 668 (805)
.+|.+|...|+ +++|.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHH
Confidence 99999999995 699866
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-06 Score=88.35 Aligned_cols=154 Identities=10% Similarity=-0.067 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHc
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVG-VLSACSN 557 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~ 557 (805)
...+...+...|++++|...|++.. ..+...+..+...|.+.|++++|+..++++.. ..|+...... ....+..
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHHHHHh
Confidence 3334444444444444444444433 11333444444444444444444444444443 2233221111 1112333
Q ss_pred CCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC---HHHHHHHHHHHHHcCCHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS---VMIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a 632 (805)
.+..++|...+++.... .| +...+..+..+|...|++++|++.++++ ...|+ ...+..|+..+...|+.++|
T Consensus 198 ~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred hcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 34444444444444422 23 3344445555555555555555554433 11221 34555555555555655555
Q ss_pred HHHHHHHh
Q 039715 633 RLSAQHIL 640 (805)
Q Consensus 633 ~~~~~~~~ 640 (805)
...+++.+
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=7.6e-08 Score=97.57 Aligned_cols=183 Identities=8% Similarity=-0.081 Sum_probs=116.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLS 553 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 553 (805)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..+++.++ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556667777888888888888887765 23677788888888888888888888888877 4554 446777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 632 (805)
++...|++++|...|+...+. .|+. ..+...+....+.+...+... .......++..+...+.. + ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 888888888888888877643 2321 111112222222211111111 222222344444444433 2 26888889
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhc-CChHHHhh
Q 039715 633 RLSAQHILDFEPEDEATHVLLSNIYAMA-RSWEKAAS 668 (805)
Q Consensus 633 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~ 668 (805)
++.++++++++|++......+..++... +++++|.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 191 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9889999999988877777777777666 55666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-06 Score=76.07 Aligned_cols=113 Identities=13% Similarity=0.173 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACI 624 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~ 624 (805)
.+..+...+...|++++|..+++++.+.. ..+...+..++..+.+.|++++|..+++++ .. ..+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44555555556666666666666655331 123455666666666777777777666654 11 245678888999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
..|++++|...+++++++.|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999987765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.1e-07 Score=78.73 Aligned_cols=113 Identities=11% Similarity=0.022 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~ 623 (805)
.+..+...+...|++++|...|+...+ ..| +...+..++..|...|++++|.+.++++ ... .+...|..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 445555555555556666555555552 233 3455556666666666666666666544 112 3567888889999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
...|++++|+..+++++++.|++...+..++.+|...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988774
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=7.3e-06 Score=83.45 Aligned_cols=159 Identities=6% Similarity=-0.126 Sum_probs=122.3
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCC-----C----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDW-----N----EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR-PN----NLTFV 549 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~ 549 (805)
..+..+...|++++|.+.+++..+. + ...+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999887542 1 113345777777888999999999999984322 23 22688
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcC----CCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC-HHHH
Q 039715 550 GVLSACSNGGLLEQGEAYFKSMVANYG----IEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPS-VMIW 616 (805)
Q Consensus 550 ~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~ 616 (805)
.+..+|...|++++|..+|+++.+... ..+ ...+|..++..|.+.|++++|.+.+++. ...+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999999885321 112 2347889999999999999999998755 11222 5689
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHhcc
Q 039715 617 RALLGACIIHN-NVEIGRLSAQHILDF 642 (805)
Q Consensus 617 ~~l~~~~~~~g-~~~~a~~~~~~~~~~ 642 (805)
..++.++...| ++++|+..+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999 579999999999874
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-07 Score=90.36 Aligned_cols=137 Identities=10% Similarity=-0.037 Sum_probs=91.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHH
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC--IEHYTSMVSLL 591 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 591 (805)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 33455566666677776666666552 354444444444566777777777777644311 0 111 23566677778
Q ss_pred HhcCCHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 592 GRAGHLDKAAKLIEGI---PFQPS--VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
.+.|++++|++.|++. +..|. ...+..+..+++..|+.++|...++++++.+|+ +.+...|.+
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 8888888888888766 22243 346778888899999999999999999999998 777666643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.7e-07 Score=83.13 Aligned_cols=98 Identities=8% Similarity=0.079 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
.+..+...+.+.|++++|...|+.+.. +.| +...|..++.+|.+.|++++|++.|+++ ...| ++..|..++.+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 444555555566666666666666553 234 3555666666666666666666666644 2233 456777888888
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCc
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
...|++++|+..+++++++.|+.+
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=76.74 Aligned_cols=116 Identities=10% Similarity=0.011 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACI 624 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~ 624 (805)
.+..+...+...|++++|...|+...... ..+...+..++..+...|++++|.+.+++. ...| +...|..++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 44445555555666666666666655331 124455666666666666777766666644 1223 4678888889999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
..|++++|...+++++++.|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999988763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.3e-06 Score=82.94 Aligned_cols=204 Identities=11% Similarity=0.088 Sum_probs=163.2
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHhhhcCC---CCHhHHHHHHHHH----HhC---CCh
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG--SITDARLVFDMMND---WNEVSWNAMISGY----SMH---GLS 526 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~ 526 (805)
..++|....+.++..+ +.+..+++.-...+...| +++++++.++.+.. ++..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3457888888888876 446677888888888888 99999999998873 3666788766666 555 789
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC------
Q 039715 527 AEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLE--QGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH------ 596 (805)
Q Consensus 527 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~------ 596 (805)
++++++++++.+. .| |...+..-...+.+.|.++ +++++++.+.+. .| +...|+.-..++.+.|+
T Consensus 127 ~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 127 YREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhh
Confidence 9999999999985 45 5567777777778888888 999999999854 45 56677777777777776
Q ss_pred HHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhccC---CCCcchHHHHHHHHHhcCChHHHhh
Q 039715 597 LDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEI-GRLSAQHILDFE---PEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 597 ~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++++.++++ ... .|...|+.+...+...|+... ....++++++++ |.++.++..|+++|.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 89999998765 233 477899999999999887444 556888888876 8888999999999999999999976
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-07 Score=81.53 Aligned_cols=107 Identities=7% Similarity=-0.024 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
.+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|++.|+++ ...| ++..|..++.+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4555556666777777777777776633 34 4566667777777777777777777655 2233 456788888899
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
...|++++|+..+++++++.|+++........+
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 999999999999999999999887765544433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=6.1e-07 Score=93.46 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=102.0
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMV 588 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 588 (805)
+...|..+...|.+.|++++|+..|++.++. .|+...+ ..+++...- . -....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-A--------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-H--------HHHHHHHHHH
Confidence 4556777777777777777777777777773 3432100 001111110 0 0135677788
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 666 (805)
.+|.+.|++++|++.++++ ...| +...|..+..+|...|++++|+..++++++++|+++.++..++.+|...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888765 2234 5778999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 039715 667 AS 668 (805)
Q Consensus 667 ~~ 668 (805)
.+
T Consensus 284 ~~ 285 (336)
T 1p5q_A 284 EK 285 (336)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=77.39 Aligned_cols=88 Identities=13% Similarity=-0.004 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYA 658 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 658 (805)
...+..+...+.+.|++++|...|++. ...| +...|..++.++...|++++|+..++++++++|+++..+..+|.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345556667777777777777777755 2233 56678888888888888888888888888888888888888888888
Q ss_pred hcCChHHHhh
Q 039715 659 MARSWEKAAS 668 (805)
Q Consensus 659 ~~g~~~~a~~ 668 (805)
..|++++|.+
T Consensus 98 ~~g~~~~A~~ 107 (142)
T 2xcb_A 98 QLGDLDGAES 107 (142)
T ss_dssp HTTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 8888888876
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.5e-06 Score=87.00 Aligned_cols=162 Identities=6% Similarity=-0.131 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCCC---C------HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---CC--HH
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMNDW---N------EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR---PN--NL 546 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~~ 546 (805)
.+...+..|...|++++|.+.+.+..+. . ...+..+...+...|++++|+..|++..+...+ +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566777888888888887654321 1 123444666677788899999988888763211 11 33
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC-H
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPS-V 613 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~ 613 (805)
++..+...|...|++++|..+|+++.+.....|+ ...+..++..|.+.|++++|.+.+++. ..... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6778888888889999999998888733222232 257888888899999999999888754 11111 5
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhcc
Q 039715 614 MIWRALLGACIIHNNVEIG-RLSAQHILDF 642 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 642 (805)
.+|..++..|...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888889999999999 7778888764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.3e-07 Score=79.95 Aligned_cols=86 Identities=7% Similarity=-0.050 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
.+..++..+.+.|++++|++.|++. ...| +...|..++.++...|++++|+..++++++++|+++.++..+|.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444555555555666665555543 1122 4455666666666666666666666666666666666666666666666
Q ss_pred CChHHHhh
Q 039715 661 RSWEKAAS 668 (805)
Q Consensus 661 g~~~~a~~ 668 (805)
|++++|.+
T Consensus 86 ~~~~~A~~ 93 (126)
T 3upv_A 86 KEYASALE 93 (126)
T ss_dssp TCHHHHHH
T ss_pred hCHHHHHH
Confidence 66666655
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-06 Score=77.96 Aligned_cols=118 Identities=8% Similarity=0.068 Sum_probs=73.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACI 624 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~ 624 (805)
+..+...+...|++++|...|+..... .| +...+..++..+.+.|++++|.+.+++. ... .+...|..++..+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 333444444555555555555554432 22 3445555555556666666666655543 112 34567778888888
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHH--HHHHHhcCChHHHhh
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLL--SNIYAMARSWEKAAS 668 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~ 668 (805)
..|++++|+..+++++++.|++...+..+ +..+...|++++|.+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887777444 444777888888765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=8.8e-07 Score=84.35 Aligned_cols=163 Identities=8% Similarity=-0.021 Sum_probs=106.1
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 039715 485 LIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLL 561 (805)
Q Consensus 485 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 561 (805)
.+......|++++|.+.++..... ....|..+...+...|++++|+..|++.++. .|+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hH
Confidence 344455557777777777654322 4556777888888889999999999988873 3332111000 00
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039715 562 EQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHI 639 (805)
Q Consensus 562 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 639 (805)
..-. .. .....|..+..+|.+.|++++|+..+++. ... .+...|..++.+|...|++++|+..++++
T Consensus 80 ~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 00 01345667777788888888888877755 223 35678999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 640 LDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 640 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++|+++.++..++.++...|+.+++.+
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-06 Score=81.61 Aligned_cols=153 Identities=12% Similarity=-0.017 Sum_probs=94.8
Q ss_pred hcCCHHHHHH---HhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHH
Q 039715 491 KCGSITDARL---VFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQR----GWRP-NNLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 491 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~ 562 (805)
..|++++|.+ .+..-+......|..+...|...|++++|+..|++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777 554433335567777777777777777777777776651 1112 1235666666777778888
Q ss_pred HHHHHHHHHHHhcCCCC-C----hHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCCH
Q 039715 563 QGEAYFKSMVANYGIEP-C----IEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS----VMIWRALLGACIIHNNV 629 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~ 629 (805)
+|..++++..+...-.+ + ...+..+...+...|++++|...+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88887777664322122 1 244666777777778887777777644 11122 22356677777788888
Q ss_pred HHHHHHHHHHhccC
Q 039715 630 EIGRLSAQHILDFE 643 (805)
Q Consensus 630 ~~a~~~~~~~~~~~ 643 (805)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-06 Score=84.86 Aligned_cols=173 Identities=10% Similarity=-0.100 Sum_probs=133.6
Q ss_pred hcCCHHHHHHHhhhcCC---CCHhHHHHH-------HHHHHhCCChHHHHHHHHHHHHcCCCCCHH--------------
Q 039715 491 KCGSITDARLVFDMMND---WNEVSWNAM-------ISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-------------- 546 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 546 (805)
..++.+.|.+.|.++.. .....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 56888999999988863 356788888 5667777777777777776655 344221
Q ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCH----H
Q 039715 547 --------TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSV----M 614 (805)
Q Consensus 547 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~----~ 614 (805)
....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|+..|++....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 233455668889999999999988763 3564446667778999999999999999977433433 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC--CC-CcchHHHHHHHHHhcCChHHHhh
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDFE--PE-DEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++..++.++...|++++|+..++++.... |. .+.....++.++.+.|+.++|..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 78889999999999999999999998644 55 55688899999999999999987
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.5e-06 Score=78.44 Aligned_cols=129 Identities=9% Similarity=0.084 Sum_probs=97.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHH-HHhcCCH
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSL-LGRAGHL 597 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~ 597 (805)
...|++++|+..|++..+. .| +...+..+...+...|++++|..+|+++.+. .| +...+..++.+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 3567788888888888774 34 4567777888888888999999888888754 34 56677778888 7788888
Q ss_pred --HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 598 --DKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 598 --~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
++|...++++ ...| +...|..++..+...|++++|+..+++++++.|+++.....+.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9998888865 2234 5678889999999999999999999999999998876655443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.36 E-value=7.4e-07 Score=79.66 Aligned_cols=112 Identities=7% Similarity=-0.024 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
.+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|++. ...| ++..|..++.++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444555566667777777777766633 34 4556666777777777777777777654 1223 456788888889
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
...|++++|+..+++++++.|+++........+....+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999988877766655544433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.1e-06 Score=73.77 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALL 620 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~ 620 (805)
.+..+...+...|++++|..+|+... ...|+ ...+..+...|.+.|++++|++.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 34444444444455555555544444 22333 344555556666666666666665543 1123 566788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
.++...|++++|+..+++++++.|++...+..+..+....
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 8899999999999999999999999988888887775443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=9.1e-06 Score=69.12 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
.+..+...+...|++++|...|+..... .| +...+..++..+.+.|++++|.+.+++. ...| +...|..++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444445555566666666666655532 23 4455666666666666666666666644 1223 567788888889
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
...|++++|...+++++++.|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999988888887764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.32 E-value=9.7e-06 Score=77.09 Aligned_cols=155 Identities=12% Similarity=-0.017 Sum_probs=99.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC------C---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCC-C--
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMND------W---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG-WRP-N-- 544 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-~-- 544 (805)
...++..+...|...|++++|...|++... . ....++.+...|...|++++|+..+++..+.- -.+ +
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 345556666666677777777766665542 1 34567777888888888888888888776520 012 2
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHH
Q 039715 545 --NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRA 618 (805)
Q Consensus 545 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ 618 (805)
...+..+...+...|++++|..++++......-..+ ...+..+...+.+.|++++|.+.+++.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------- 173 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA----------- 173 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH-----------
Confidence 234666777788889999999888887643211122 234677888899999999998887654
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
+......|+......+...+-...|
T Consensus 174 -l~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 174 -RDIFAELEDSEAVNELMTRLNGLEH 198 (203)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHcCCHHHHHHHHhcccchhh
Confidence 2334455555544444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.7e-06 Score=76.41 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
.+..+...+...|++++|+..|++..+. .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4445555555666666666666665532 23 4556666666666677777776666654 2233 467889999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
...|++++|+..++++++++|+++..+...+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999866555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=8.1e-07 Score=79.14 Aligned_cols=73 Identities=8% Similarity=0.005 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI--------PFQPSV-MIW----RALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
.|..+..++.+.|++++|+..+++. ++.|+. ..| ...+.++...|++++|+..|+++++++|++.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4555555555555555555554432 336764 478 888899999999999999999999999988776
Q ss_pred HHHHHH
Q 039715 650 HVLLSN 655 (805)
Q Consensus 650 ~~~l~~ 655 (805)
+.-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.4e-05 Score=72.96 Aligned_cols=126 Identities=10% Similarity=0.023 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMV 588 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 588 (805)
..|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...+++..+. .| +...+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 34555666666666666666666666653 33 3445556666666666777777766666643 23 455666666
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRA--LLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
..|.+.|++++|.+.++++ ...| +...|.. ++..+...|++++|+..+++..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6777777777777766654 1122 3334433 33335666777777777776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-06 Score=74.34 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 584 YTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 584 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
+..++..+.+.|++++|+..+++. ...| +...|..++.++...|+.++|+..++++++++|+++.++..|+.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344555666666676666666654 2233 45666677777777777777777777777777777777777777777777
Q ss_pred ChHHHhh
Q 039715 662 SWEKAAS 668 (805)
Q Consensus 662 ~~~~a~~ 668 (805)
++++|.+
T Consensus 100 ~~~~A~~ 106 (121)
T 1hxi_A 100 NANAALA 106 (121)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 7777655
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.6e-06 Score=70.43 Aligned_cols=109 Identities=9% Similarity=-0.038 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACI 624 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~ 624 (805)
+......+...|++++|...|++..+. .| +...|..++.+|.+.|++++|++.+++. ...| +...|..++.++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 334444455555555555555555532 23 3455556666666666666666666544 1233 4667888888888
Q ss_pred HcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHh
Q 039715 625 IHNNVEIGRLSAQHILDFE------PEDEATHVLLSNIYAM 659 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 659 (805)
..|++++|+..++++++++ |++......+..+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999988 8888877777766543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.4e-06 Score=73.55 Aligned_cols=87 Identities=8% Similarity=0.058 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc-------hHHH
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA-------THVL 652 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 652 (805)
..+..++..+.+.|++++|++.|++. .+.| +...|..++.+|...|++++|+..+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888888999999999988865 3344 5778999999999999999999999999999987754 6777
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
+|.+|...|++++|.+
T Consensus 89 lg~~~~~~~~~~~A~~ 104 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQ 104 (127)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 8999999999999987
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00032 Score=71.66 Aligned_cols=230 Identities=11% Similarity=0.022 Sum_probs=153.8
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccC-CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-C-
Q 039715 418 GYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLA-ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKC-G- 493 (805)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g- 493 (805)
.....+..++|++++.+++.. .|+.. .++.--..+...+ .++++...++.++... +.+..+|+.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334445556777777777764 34443 3444444445555 4777777777777665 44566677666666665 6
Q ss_pred CHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--
Q 039715 494 SITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSA--------EVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGL-- 560 (805)
Q Consensus 494 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-- 560 (805)
++++++++++++.+. |..+|+--.-.+.+.|.++ ++++.++++++.. .-|...++.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 788888888888754 6667777666666666666 8999999999853 2255677777777777775
Q ss_pred -----HHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCH--------------------HHHHHHHHcCC-C----
Q 039715 561 -----LEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHL--------------------DKAAKLIEGIP-F---- 609 (805)
Q Consensus 561 -----~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~--------------------~eA~~~~~~~~-~---- 609 (805)
++++++++++++. +.| |...|+-+-.++.+.|+. .+..++..++. .
T Consensus 219 ~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 6888888888774 356 566777777777777653 44455555442 1
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCcchHHHHH
Q 039715 610 ---QPSVMIWRALLGACIIHNNVEIGRLSAQHIL-DFEPEDEATHVLLS 654 (805)
Q Consensus 610 ---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 654 (805)
.+.+..+.-|+..|...|+.++|.++++.+. +.+|-....+...+
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2567788889999999999999999999986 67886655555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=8.9e-07 Score=96.91 Aligned_cols=113 Identities=10% Similarity=0.040 Sum_probs=52.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCH
Q 039715 520 YSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHL 597 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 597 (805)
+.+.|++++|++.|++.++. .|+ ...+..+..++...|++++|+..+++..+ +.| +...|..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCH
Confidence 34455555555555555552 332 33455555555555555555555555542 233 344555555555555555
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 039715 598 DKAAKLIEGI-PFQP-SVMIWRALLGA--CIIHNNVEIGRLSAQ 637 (805)
Q Consensus 598 ~eA~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~a~~~~~ 637 (805)
++|++.++++ ...| +...|..+..+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555543 1112 12233333333 455555666666555
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00011 Score=74.74 Aligned_cols=191 Identities=11% Similarity=-0.004 Sum_probs=129.0
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCC-hHHHHHHH
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG--SITDARLVFDMMN---DWNEVSWNAMISGYSMHGL-SAEVLKVF 533 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~ 533 (805)
++++..++..++... +-+..+|+.-...+.+.| .+++++++++++. .+|-.+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555666666554 446666766666666666 4788888888876 3477788887777778887 58899999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhc---
Q 039715 534 DLMQQRGWRP-NNLTFVGVLSACSNG--------------GLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRA--- 594 (805)
Q Consensus 534 ~~m~~~g~~p-~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--- 594 (805)
+++++. .| |...++.....+.+. +.+++++++++.... +.| |...|+-+-.++.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCc
Confidence 988885 44 444555544444333 457788888888774 356 556666666666655
Q ss_pred --------CCHHHHHHHHHcC-CCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 595 --------GHLDKAAKLIEGI-PFQPSVMIWRALLGAC-----IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 595 --------g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
+.++++++.++++ ...||. .|.-+..+. ...|..++....+.++.+++|...+.|..|..-+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4678888888866 345654 454333222 1357788999999999999998888887775543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=7e-06 Score=72.41 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYA 658 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 658 (805)
...+..++..+.+.|++++|...|++. ...| +...|..++..+...|++++|+..++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 444555555555555555555555433 1122 34555566666666666666666666666666666666666666666
Q ss_pred hcCChHHHhh
Q 039715 659 MARSWEKAAS 668 (805)
Q Consensus 659 ~~g~~~~a~~ 668 (805)
..|++++|..
T Consensus 89 ~~~~~~~A~~ 98 (137)
T 3q49_B 89 EMESYDEAIA 98 (137)
T ss_dssp HTTCHHHHHH
T ss_pred HHhhHHHHHH
Confidence 6666666654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=71.11 Aligned_cols=115 Identities=10% Similarity=-0.010 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHH
Q 039715 544 NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALL 620 (805)
Q Consensus 544 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~ 620 (805)
+...+..+...+...|++++|...|+..... .| +...+..++.+|.+.|++++|...+++. ...| +...|..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3445555556666666666666666665533 23 3456666666666677777776666644 1223 466788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCC-----CcchHHHHHHHHHhcC
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPE-----DEATHVLLSNIYAMAR 661 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g 661 (805)
.++...|++++|+..+++++++.|+ +......+..+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999888887 5555555555544433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-05 Score=88.02 Aligned_cols=138 Identities=10% Similarity=0.061 Sum_probs=100.4
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMV 588 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 588 (805)
....|..+...|.+.|++++|+..|++.++. .|+...+ .-++..+ ... -....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~-~~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKA-SES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHH-HHH--------HHHHHHHHHH
Confidence 4557777888888888888888888888773 3332110 0011110 000 0135677888
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 666 (805)
.+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..++++++++|++..++..++.++...|++++|
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888765 2233 5778999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 039715 667 AS 668 (805)
Q Consensus 667 ~~ 668 (805)
.+
T Consensus 405 ~~ 406 (457)
T 1kt0_A 405 DR 406 (457)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=4.1e-06 Score=71.32 Aligned_cols=89 Identities=9% Similarity=0.080 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
....+..++..+...|++++|.+.+++. ... .+...|..++..+...|++++|+..+++++++.|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999876 223 36788999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHhh
Q 039715 658 AMARSWEKAAS 668 (805)
Q Consensus 658 ~~~g~~~~a~~ 668 (805)
...|++++|.+
T Consensus 83 ~~~~~~~~A~~ 93 (118)
T 1elw_A 83 EFLNRFEEAKR 93 (118)
T ss_dssp HHTTCHHHHHH
T ss_pred HHHhhHHHHHH
Confidence 99999999987
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.8e-06 Score=76.38 Aligned_cols=89 Identities=12% Similarity=0.003 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
+...+..+...|.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888899999999999999999876 2334 6789999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHhh
Q 039715 658 AMARSWEKAAS 668 (805)
Q Consensus 658 ~~~g~~~~a~~ 668 (805)
...|++++|.+
T Consensus 90 ~~~g~~~~A~~ 100 (164)
T 3sz7_A 90 FDMADYKGAKE 100 (164)
T ss_dssp HHTTCHHHHHH
T ss_pred HHccCHHHHHH
Confidence 99999999988
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-05 Score=69.91 Aligned_cols=110 Identities=6% Similarity=-0.056 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMV 588 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li 588 (805)
..|..++..+.+.|++++|++.|++.++ +.|+ ...|..+..++...|++++|+..++..++. .|+. ..+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH-
Confidence 4566677777777777777777777776 3454 345666666667777777777776666532 1210 001001
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 589 SLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
..+|..++.++...|++++|+..++++++..|+ +....
T Consensus 83 ------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 83 ------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 134666777777888888888888888887773 44333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-05 Score=85.56 Aligned_cols=169 Identities=8% Similarity=-0.058 Sum_probs=138.1
Q ss_pred cCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 039715 492 CGSITDARLVFDMMND---WNEVSWNAMISGYSMHGL----------SAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSN 557 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 557 (805)
...-++|.+.++++.. .+...|+.-...+...|+ ++++++.++++.+. .| +..+|..-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3445677888887763 356788887777777777 89999999999984 56 45578777778888
Q ss_pred CC--CHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC-CHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc-----
Q 039715 558 GG--LLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG-HLDKAAKLIEGI-PFQP-SVMIWRALLGACIIH----- 626 (805)
Q Consensus 558 ~g--~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g-~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~----- 626 (805)
.| +++++++.++++.+. +| +...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88 779999999999954 45 6677888888888999 899999999877 4445 677899988887763
Q ss_pred ---------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 627 ---------NNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 627 ---------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
+.++++++.++++++++|++..+|..++.++.+.|+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999999666
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-06 Score=78.19 Aligned_cols=56 Identities=9% Similarity=0.117 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|..+..+|...|++++|+..++++++++|+++.+|..+|.+|...|++++|..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence 35677777778888888888888888888888888888888888888888888876
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.15 E-value=3.2e-05 Score=78.09 Aligned_cols=181 Identities=8% Similarity=-0.104 Sum_probs=112.2
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 530 (805)
+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...|++++|+
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 92 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAI 92 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 333333333333333333332 33566778888889999999999999988774 36778889999999999999999
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-C
Q 039715 531 KVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-P 608 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 608 (805)
..|++..+. .|+.. .+...+.... ...++.... ..... ...++......+...+ .|+.++|.+.+++. .
T Consensus 93 ~~~~~al~l--~p~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~ 163 (281)
T 2c2l_A 93 ANLQRAYSL--AKEQRLNFGDDIPSAL---RIAKKKRWN-SIEER-RIHQESELHSYLTRLI--AAERERELEECQRNHE 163 (281)
T ss_dssp HHHHHHHHH--HHHTTCCCCSHHHHHH---HHHHHHHHH-HHHHT-CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGT
T ss_pred HHHHHHHHh--CccchhhHHHHHHHHH---HHHHHHHHH-HHHHH-HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhc
Confidence 999998873 34221 1111111111 112222222 22222 4445566655555543 68999999988765 4
Q ss_pred CCCCH-HHHHHHHHHHHHc-CCHHHHHHHHHHHhccCC
Q 039715 609 FQPSV-MIWRALLGACIIH-NNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 609 ~~p~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p 644 (805)
..|+. .....+...+... +.+++|.++++++.+..+
T Consensus 164 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 164 GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 56654 3455555555555 678899999998887543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.14 E-value=6.8e-05 Score=64.24 Aligned_cols=92 Identities=13% Similarity=0.207 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLL 591 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 591 (805)
.|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|..+++.+.+. ...+...+..++..|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 34444444444444444444444444421 112334444444444445555555555444432 111334444444555
Q ss_pred HhcCCHHHHHHHHHc
Q 039715 592 GRAGHLDKAAKLIEG 606 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~ 606 (805)
.+.|++++|.+.+++
T Consensus 88 ~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 88 YKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHH
Confidence 555555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-05 Score=83.39 Aligned_cols=138 Identities=12% Similarity=-0.002 Sum_probs=86.7
Q ss_pred cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-C---------------HhHHHHHHH
Q 039715 457 LAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND--W-N---------------EVSWNAMIS 518 (805)
Q Consensus 457 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~ 518 (805)
++++++|...+....+.. +.+...+..+...|.+.|++++|...|++... + + ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 445555555544433321 22467788999999999999999999998762 2 2 356777777
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC
Q 039715 519 GYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH 596 (805)
Q Consensus 519 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 596 (805)
+|.+.|++++|+..|++.++. .| +...+..+..++...|++++|+..|+++.+. .| +...+..+..++.+.|+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHH
Confidence 777777777777777777763 34 3445666666666666666666666666532 33 23344444444444444
Q ss_pred HHHH
Q 039715 597 LDKA 600 (805)
Q Consensus 597 ~~eA 600 (805)
.++|
T Consensus 280 ~~~a 283 (336)
T 1p5q_A 280 QLAR 283 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.1e-06 Score=69.52 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHh
Q 039715 584 YTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE--DEATHVLLSNIYAM 659 (805)
Q Consensus 584 ~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~ 659 (805)
+..++..+.+.|++++|...+++. ... .+...|..++..+...|++++|+..+++++++.|+ ++..+..++.+|..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 333444444444444444444432 111 23344444555555555555555555555555555 45555555555555
Q ss_pred c-CChHHHhh
Q 039715 660 A-RSWEKAAS 668 (805)
Q Consensus 660 ~-g~~~~a~~ 668 (805)
. |++++|.+
T Consensus 89 ~~~~~~~A~~ 98 (112)
T 2kck_A 89 IEGKEVEAEI 98 (112)
T ss_dssp CSSCSHHHHH
T ss_pred HhCCHHHHHH
Confidence 5 55555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.13 E-value=9.6e-06 Score=85.35 Aligned_cols=137 Identities=7% Similarity=-0.003 Sum_probs=106.1
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMV 588 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 588 (805)
...|..+...+.+.|++++|+..|++.++. .|+.. ..-..+ ... ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHH---HHHHHHHHHHHHHH
Confidence 446777888888888888888888888762 11110 000111 111 1223 356788899
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 666 (805)
.+|.+.|++++|++.++++ ...| +...|..+..+|...|++++|+..++++++++|++...+..++.++...|+.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998866 4445 5678999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 039715 667 AS 668 (805)
Q Consensus 667 ~~ 668 (805)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.13 E-value=5.2e-06 Score=73.93 Aligned_cols=56 Identities=11% Similarity=-0.023 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDF-------EPEDEATH----VLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~ 668 (805)
...|..+..++...|++++|+..+++++++ +|+++.+| ..+|.+|...|++++|..
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence 348999999999999999999999999999 99999999 999999999999999988
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-05 Score=72.44 Aligned_cols=116 Identities=15% Similarity=0.070 Sum_probs=71.3
Q ss_pred hccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHH-HHhCCCh--HH
Q 039715 455 ASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISG-YSMHGLS--AE 528 (805)
Q Consensus 455 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~-~~~~g~~--~~ 528 (805)
...|++++|...+...++.. +.+...+..+...|...|++++|...|++..+ .+...|..+... |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34556666666666666554 34556666777777777777777777766542 355666666666 6666776 77
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 529 VLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 529 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
|+..|+++.+. .|+ ...+..+...+...|++++|...|+.+.+
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777777663 343 44555666666677777777777776663
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.9e-05 Score=70.41 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=81.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
+...+..++..+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|+..+++++++.|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5678888999999999999999999976 45676 578999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHhh
Q 039715 655 NIYAMARSWEKAAS 668 (805)
Q Consensus 655 ~~~~~~g~~~~a~~ 668 (805)
.+|...|++++|.+
T Consensus 107 ~~~~~~~~~~~A~~ 120 (148)
T 2dba_A 107 QALEKLGRLDQAVL 120 (148)
T ss_dssp HHHHHHTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 99999999999987
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.08 E-value=6.4e-06 Score=90.05 Aligned_cols=113 Identities=8% Similarity=0.075 Sum_probs=99.1
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCH
Q 039715 553 SACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNV 629 (805)
Q Consensus 553 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 629 (805)
..+...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..++.+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3466789999999999999854 45 5789999999999999999999999866 3345 577899999999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHH--HHhcCChHHHhh
Q 039715 630 EIGRLSAQHILDFEPEDEATHVLLSNI--YAMARSWEKAAS 668 (805)
Q Consensus 630 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~ 668 (805)
++|+..+++++++.|+++..+..++.+ +...|++++|.+
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988 999999999988
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.6e-05 Score=68.58 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHH
Q 039715 549 VGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACII 625 (805)
Q Consensus 549 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~ 625 (805)
..+...+...|++++|+..|+...+. .| +...|..+..++.+.|++++|+..+++. ...| +...|..++.++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444556666777777776666633 34 4556666677777777777777776654 2234 46678888888889
Q ss_pred cCCHHHHHHHHHHHhccCCCCc
Q 039715 626 HNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
.|++++|+..++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999988654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.6e-06 Score=74.46 Aligned_cols=139 Identities=9% Similarity=-0.006 Sum_probs=93.2
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMV 588 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 588 (805)
...|......+.+.|++++|+..|++.++. .|. ........... +.. +.| +...|..+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--~~~----------~~~~~~~~~~~--~~~------~~~~~~~~~~nla 70 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR--LDT----------LILREKPGEPE--WVE------LDRKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHTSCTTSHH--HHH------HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------hcccCCCCHHH--HHH------HHHHHHHHHHHHH
Confidence 445666677777777777777777776652 000 00000000000 000 012 345778888
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc-chHHHHHHHHHhcCChHH
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE-ATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~ 665 (805)
.+|.+.|++++|+..+++. ...| +...|..++.+|...|++++|+..++++++++|+++ .....|..+....++.++
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999998888765 2334 577899999999999999999999999999999998 667778777776665555
Q ss_pred Hhh
Q 039715 666 AAS 668 (805)
Q Consensus 666 a~~ 668 (805)
..+
T Consensus 151 ~~k 153 (162)
T 3rkv_A 151 DSR 153 (162)
T ss_dssp SSC
T ss_pred HHH
Confidence 433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.2e-05 Score=66.27 Aligned_cols=117 Identities=5% Similarity=-0.096 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLL 591 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 591 (805)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++.+.... |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~----------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE----------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc-----------
Confidence 44555555555555555555555555531 1123344444444444555555555544443221 10
Q ss_pred HhcCCHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 592 GRAGHLDKAAKLIEGIPFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
..++ ..+|..++..+...|++++|...+++++++.| ++.....++.++...+
T Consensus 71 -----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 71 -----------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp -----------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 0122 45677777788888888888888888888888 5666777776665544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.7e-05 Score=67.73 Aligned_cols=109 Identities=10% Similarity=0.006 Sum_probs=65.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHc
Q 039715 553 SACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIH 626 (805)
Q Consensus 553 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~ 626 (805)
..+...|++++|...|+.+.+...-.+. ...+..++..|.+.|++++|.+.++++ ...|+ ...+..++.++...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444555555555555555533111110 134555556666666666666666544 11222 45677777888888
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 627 NNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 627 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
|++++|+..++++++..|+++........+-.-.+
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 88999999999888888888776666555544433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.7e-06 Score=68.63 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHH
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPED------EATHV 651 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 651 (805)
+...+..++..+.+.|++++|.+.+++. ...| +...|..++.++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888889999998888765 2234 67789999999999999999999999999999998 78889
Q ss_pred HHHHHHHhcCChHHHhh
Q 039715 652 LLSNIYAMARSWEKAAS 668 (805)
Q Consensus 652 ~l~~~~~~~g~~~~a~~ 668 (805)
.++.++...|++++|.+
T Consensus 83 ~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHhHhhhHh
Confidence 99999999999988876
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=7.5e-05 Score=64.97 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMV 588 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 588 (805)
..|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|..+++++.+. .| +...+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la 91 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHHHH
Confidence 34444444444444444444444444442 22 2334444444444445555555544444422 12 234444444
Q ss_pred HHHHhcCCHHHHHHHHHc
Q 039715 589 SLLGRAGHLDKAAKLIEG 606 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~ 606 (805)
.+|.+.|++++|.+.+++
T Consensus 92 ~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 445555555555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=8e-05 Score=64.40 Aligned_cols=114 Identities=12% Similarity=0.036 Sum_probs=65.6
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSM 587 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 587 (805)
...|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++..... .| +...+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 86 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHH
Confidence 345555566666666666666666666653 23 3445555556666666666666666666543 23 34556666
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 039715 588 VSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 628 (805)
+..|.+.|++++|.+.+++. ...| +...|..+..++...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 66666666666666666544 1222 44556666666555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.4e-06 Score=71.02 Aligned_cols=107 Identities=19% Similarity=0.172 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHHhcCC-CC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGI-EP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGR 633 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 633 (805)
.|++++|+..|++..+. +. .| +...+..++.+|.+.|++++|++.+++. ...| +...|..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666666621 10 23 3456667777777777777777777655 2233 4667888888888999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 634 LSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 634 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
..++++++..|+++........+..-.+.+++
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887766655555555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.1e-05 Score=84.97 Aligned_cols=181 Identities=10% Similarity=-0.043 Sum_probs=124.1
Q ss_pred HHHhcCCHHHHHHHhhhcCCC--------------------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHH
Q 039715 488 MYAKCGSITDARLVFDMMNDW--------------------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG-WRPNNL 546 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~~~--------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ 546 (805)
.+.+.|++++|.+.|..+.+. ...++..++..|...|++++|.+.+.++...- -.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345556666666666555321 01246678888888888888888888776521 112221
Q ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhc---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCC
Q 039715 547 ----TFVGVLSACSNGGLLEQGEAYFKSMVANY---GIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQP 611 (805)
Q Consensus 547 ----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p 611 (805)
....+...+...|..+++..+++...... +..+ ....+..|+..|...|++++|.++++++ ..++
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 22223333456788999998888775421 2222 2467788999999999999999998754 1123
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---C----cchHHHHHHHHHhcCChHHHhh
Q 039715 612 S-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPE---D----EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 612 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
. ..++..++..|...|++++|...+++++.+.|. . ...+..++.++...|+|++|.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2 357888889999999999999999999876432 2 2456778889999999999987
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-05 Score=83.49 Aligned_cols=125 Identities=9% Similarity=-0.002 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLL 591 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 591 (805)
.|..+...+.+.|++++|+..|++.++ +.|+... +...|+.+++...+ . ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 455566666677777777777777666 3454331 11222222222111 0 11344444444
Q ss_pred HhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 592 GRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..++++++++|+++.++..|+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4445555554444433 1122 334444455555555555555555555555555554444444444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00019 Score=73.33 Aligned_cols=205 Identities=12% Similarity=0.016 Sum_probs=145.4
Q ss_pred CCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHhhhcCC---CCHhHHHHHHHHHHhC-C-ChHHHHH
Q 039715 458 AALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG-SITDARLVFDMMND---WNEVSWNAMISGYSMH-G-LSAEVLK 531 (805)
Q Consensus 458 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~ 531 (805)
+..++|.++.+.++..+ +.+..+++.-...+...| .++++++.++.+.. ++..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34457888888888876 446677888777788888 59999999998873 4777888887777776 7 8899999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC-----
Q 039715 532 VFDLMQQRGWRP-NNLTFVGVLSACSNGGLLE--------QGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH----- 596 (805)
Q Consensus 532 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~----- 596 (805)
+++++++. .| |...+..-...+.+.|.++ +++++++++.+. .| +...|+....++.+.|+
T Consensus 147 ~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 147 YIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccch
Confidence 99999984 45 4556665555555555555 888898888854 45 66778888888888876
Q ss_pred --HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHhccC------CCC
Q 039715 597 --LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNV--------------------EIGRLSAQHILDFE------PED 646 (805)
Q Consensus 597 --~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~ 646 (805)
++++++.++++ ...| |...|+-+-+.+...|+. ..-......+.... +..
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 68888888755 2334 677898888888777654 22223333333222 345
Q ss_pred cchHHHHHHHHHhcCChHHHhh
Q 039715 647 EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 647 ~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+-+...|+++|...|+.++|.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~ 323 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAK 323 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHH
Confidence 5667789999999999888876
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.9e-05 Score=70.26 Aligned_cols=131 Identities=11% Similarity=-0.021 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWR-PN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEH 583 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 583 (805)
+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|..+++...+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444455555555555555544432100 11 123444455555556666666655554432111111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 584 YTSMVSLLGRAGHLDKAAKLIEGI-------PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 584 ~~~li~~~~~~g~~~eA~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
+..+...+...|++++|.+.+++. ...+ ....+..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 555556666666666666655533 1011 12356666777777788888888877777654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.9e-05 Score=63.74 Aligned_cols=98 Identities=7% Similarity=-0.054 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC---CHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP---SVMIWRALLGAC 623 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~~l~~~~ 623 (805)
+..+...+...|++++|...|+++.+.. ..+...+..++..|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3344444555555555555555554321 123445555666666666666666666544 1223 466777888888
Q ss_pred HHc-CCHHHHHHHHHHHhccCCCCc
Q 039715 624 IIH-NNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 624 ~~~-g~~~~a~~~~~~~~~~~p~~~ 647 (805)
... |++++|++.++++++..|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888888654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00064 Score=69.09 Aligned_cols=155 Identities=12% Similarity=0.027 Sum_probs=117.5
Q ss_pred HHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCC-HHHHHHH
Q 039715 495 ITDARLVFDMMN---DWNEVSWNAMISGYSMHGL--SAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGL-LEQGEAY 567 (805)
Q Consensus 495 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~ 567 (805)
+++++.+++.+. .++..+|+.-...+...|+ +++++++++++.+. .| |...|+.-..++.+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 577888887776 3578899988888888884 89999999999995 45 55577776667777887 6899999
Q ss_pred HHHHHHhcCCCC-ChHHHHHHHHHHHhc--------------CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc----
Q 039715 568 FKSMVANYGIEP-CIEHYTSMVSLLGRA--------------GHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIH---- 626 (805)
Q Consensus 568 ~~~m~~~~~~~p-~~~~~~~li~~~~~~--------------g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~---- 626 (805)
++.+.+. .| |...|+....++.+. +.++++++++++. ...| |...|+-+-+.+...
T Consensus 168 ~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 9999864 45 666777777666655 5688999988865 2334 678898777776655
Q ss_pred -------CCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 627 -------NNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 627 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
+.++++++.++++++++|++.-.+..++
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence 4588999999999999998854444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00012 Score=79.01 Aligned_cols=125 Identities=9% Similarity=-0.082 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCC-----C----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC----CCC-HHHH
Q 039715 483 NALIDMYAKCGSITDARLVFDMMND-----W----NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW----RPN-NLTF 548 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~-~~t~ 548 (805)
+.+...+...|+.+.|.++++.... . -..++..++..|...|++++|+.++++....-. +|. ...+
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 3344444556677777766665431 1 134667778888888888888888887765311 222 2367
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 549 VGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 549 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
..++..|...|++++|..++++......-.++ ...+..++..+...|++++|...|.+.
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77778888889999999888877643211121 256777778888889998888776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.8e-06 Score=71.33 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=64.3
Q ss_pred hcCCHHHHHHHHHcC-CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 593 RAGHLDKAAKLIEGI-PF---QPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 593 ~~g~~~eA~~~~~~~-~~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
..|++++|+..|++. .. .|+ ...|..++..|...|++++|+..+++++++.|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999876 33 253 4689999999999999999999999999999999999999999999999999997
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
.
T Consensus 82 ~ 82 (117)
T 3k9i_A 82 E 82 (117)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.2e-05 Score=74.50 Aligned_cols=87 Identities=8% Similarity=-0.059 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS--------------VMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
..+..++..+.+.|++++|.+.|++. |..|+ ...|..+..+|...|++++|+..++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455556666666666666666543 11111 3688899999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHhh
Q 039715 644 PEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 644 p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+++.++..+|.+|...|++++|.+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999999999999987
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.91 E-value=3.8e-05 Score=61.81 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYA 658 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 658 (805)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777788888888888888888765 2233 56789999999999999999999999999999999999999999998
Q ss_pred hcC
Q 039715 659 MAR 661 (805)
Q Consensus 659 ~~g 661 (805)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.5e-05 Score=67.93 Aligned_cols=84 Identities=13% Similarity=0.064 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---cchHHHHHHH
Q 039715 585 TSMVSLLGRAGHLDKAAKLIEGI-PFQPS-V---MIWRALLGACIIHNNVEIGRLSAQHILDFEPED---EATHVLLSNI 656 (805)
Q Consensus 585 ~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 656 (805)
..++..+.+.|++++|.+.|+++ ...|+ . ..|..++.++...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 45677888999999999999876 11232 2 478889999999999999999999999999999 7789999999
Q ss_pred HHhcCChHHHhh
Q 039715 657 YAMARSWEKAAS 668 (805)
Q Consensus 657 ~~~~g~~~~a~~ 668 (805)
|...|++++|.+
T Consensus 86 ~~~~g~~~~A~~ 97 (129)
T 2xev_A 86 QYGEGKNTEAQQ 97 (129)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCCHHHHHH
Confidence 999999999987
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.6e-05 Score=66.74 Aligned_cols=128 Identities=11% Similarity=-0.000 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----C----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----H
Q 039715 480 VVANALIDMYAKCGSITDARLVFDMMNDW-----N----EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR-PN----N 545 (805)
Q Consensus 480 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~ 545 (805)
.++..+...|...|++++|...|++..+. + ..++..+...|...|++++|+..+++..+..-. ++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666777778888888888887766521 1 246777888888889999998888887652111 11 3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 546 LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP----CIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 546 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
..+..+...+...|++++|..++++..+...-.. ....+..+...|...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3566677778889999999998888764321111 1356778888899999999999888753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.85 E-value=4.5e-05 Score=66.11 Aligned_cols=108 Identities=9% Similarity=0.032 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 039715 480 VVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW--RPN----NLTFVG 550 (805)
Q Consensus 480 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~t~~~ 550 (805)
..+..+...|...|++++|...|++.. ..+...|..+...|...|++++|+..|++..+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456667777778888888888887765 23667778888888888888888888888776421 112 456677
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSL 590 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 590 (805)
+..++...|++++|...|+.+.+. .|+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 777778888888888888877743 3555555444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.6e-05 Score=83.48 Aligned_cols=86 Identities=13% Similarity=0.033 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCc---chHHHHHHHHHhcCChHHHhh---cCCCCceEEECCeEE
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILD-----FEPEDE---ATHVLLSNIYAMARSWEKAAS---KEPGLSWIENQGMVH 683 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~---~~~~~s~~~~~~~~~ 683 (805)
+++.|+.+|..+|++++|+.+++++++ +.|+++ ..+..||.+|..+|++++|.. +.... .
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i-----~---- 423 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI-----L---- 423 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----H----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----H----
Confidence 445555555555555555555555544 233332 234445555555555555554 00000 0
Q ss_pred EEeeCCCCCccHHHHHHHHHHHHHHHH
Q 039715 684 YFRAGDTSHADMNIIRGMLEWLNMKSR 710 (805)
Q Consensus 684 ~f~~~~~~~~~~~~i~~~l~~l~~~~~ 710 (805)
-..-...||.+.++..+|.....+++
T Consensus 424 -~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 424 -LVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp -HHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 00012568888888887777765554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00012 Score=79.41 Aligned_cols=114 Identities=9% Similarity=0.042 Sum_probs=82.8
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCC--CC----ChHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCCH-HHHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGI--EP----CIEHYTSMVSLLGRAGHLDKAAKLIEGI---------PFQPSV-MIWRA 618 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~--~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~ 618 (805)
+..+|++++|+.++++.++...- -| ...+++.|+.+|..+|++++|+.++++. +.+|++ .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777666543211 11 1356777777788888888887777654 345665 47899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc-----cCCCCcchH---HHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRLSAQHILD-----FEPEDEATH---VLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~ 668 (805)
|+..|..+|++++|+.+++++++ +.|+++.+- ..|+..+..+|++++|..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 578776654 467778888888888854
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.78 E-value=5.6e-05 Score=82.18 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++|..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~ 372 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999988
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.70 E-value=5.5e-05 Score=78.57 Aligned_cols=105 Identities=10% Similarity=-0.067 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIH 626 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~ 626 (805)
.+..+...+...|++++|...|++.... .|+.. .+...|+.+++...+. ...|..+..+|...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 4556667788899999999999988743 45432 2334455566554442 13788999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 627 NNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 627 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|++++|+..++++++++|+++.+|..++.+|...|++++|.+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD 285 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999998
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=6.6e-05 Score=80.24 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=17.4
Q ss_pred CCCccHHHHHHHHHHHHHHHH
Q 039715 690 TSHADMNIIRGMLEWLNMKSR 710 (805)
Q Consensus 690 ~~~~~~~~i~~~l~~l~~~~~ 710 (805)
..||.+.+++..|+....+|+
T Consensus 407 ~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 407 REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHh
Confidence 579999999998888877765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00012 Score=60.42 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 612 SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 612 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...|..++..|...|++++|+..++++++++|+++.+|..+|.+|...|++++|.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999877
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=3e-05 Score=68.89 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=37.3
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 598 DKAAKLIEGI-PFQP-SVMIWRALLGACIIH-----------NNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 598 ~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
++|+..|++. .+.| +...|..++.+|... |++++|+..|+++++++|++......+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3555555543 2334 344566666666655 589999999999999999886554443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=5.7e-05 Score=80.54 Aligned_cols=85 Identities=11% Similarity=0.032 Sum_probs=45.2
Q ss_pred cCCCHHHHHHHHHHHHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCCH-HHHHHHH
Q 039715 557 NGGLLEQGEAYFKSMVANYG--IEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI---------PFQPSV-MIWRALL 620 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~l~ 620 (805)
+.|++++|+.++++.++... +-|+ ..+++.|..+|..+|++++|+.+++++ +.+|++ .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45666777776666554321 1111 244555556666666666666555543 233443 2455555
Q ss_pred HHHHHcCCHHHHHHHHHHHhc
Q 039715 621 GACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~ 641 (805)
..|..+|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 555556666666655555554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00031 Score=73.74 Aligned_cols=116 Identities=6% Similarity=-0.120 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC-------------------CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMND-------------------WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW 541 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 541 (805)
.+..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.+++.++ +
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--I 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--h
Confidence 345566667777777777777765543 1344566666666666666666666666666 3
Q ss_pred CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 039715 542 RPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAA 601 (805)
Q Consensus 542 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~ 601 (805)
.|+ ...+..+..++...|++++|+..|+++.+. .| +...+..+..++.+.++.+++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 443 345555566666666666666666665532 33 3444445555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00015 Score=60.79 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=69.6
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-------
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC------- 580 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------- 580 (805)
+...|..+...+...|++++|++.|++.++. .| +...+..+..++...|++++|+..+++.. .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHH
Confidence 3456777788888888888888888888874 45 45577777778888888888888888877 45565
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGIP 608 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~~ 608 (805)
...+..+...+...|+.++|.+.++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4556666677777777777766666654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00017 Score=61.18 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 612 SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 612 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...|..++..+...|++++|+..++++++++|+++..+..++.+|...|++++|..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 345666666666666666666666666666666666666666666666666666655
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=6.1e-05 Score=66.86 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 593 RAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN----------VEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 593 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
|.+++++|.+.+++. ...| ++..|..++.++...|+ +++|+..++++++++|++..+|..||++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445556666665544 2233 45566666666665554 57999999999999999999999999999988
Q ss_pred C-----------ChHHHhh
Q 039715 661 R-----------SWEKAAS 668 (805)
Q Consensus 661 g-----------~~~~a~~ 668 (805)
| ++++|.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~ 112 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQ 112 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHH
Confidence 5 7888876
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0012 Score=57.94 Aligned_cols=112 Identities=6% Similarity=-0.162 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh----cCCHHH
Q 039715 524 GLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGR----AGHLDK 599 (805)
Q Consensus 524 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~e 599 (805)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999877 44443 556677778888999999988754 467788888888888 889999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 039715 600 AAKLIEGIPFQPSVMIWRALLGACII----HNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 600 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 644 (805)
|.++|++.....++..+..|...|.. .+|.++|+..++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999977434677888888888888 8899999999999988753
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00067 Score=72.26 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=67.4
Q ss_pred hCCChHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----CC-CCC-hHHHHHHH
Q 039715 522 MHGLSAEVLKVFDLMQQR---GWRPNN----LTFVGVLSACSNGGLLEQGEAYFKSMVANY----GI-EPC-IEHYTSMV 588 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~-~p~-~~~~~~li 588 (805)
..|++++|+.++++.++. -+-|+. .+++.+..+|...|++++|..++++++..+ |- .|+ ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 578999999999988763 233442 478889999999999999999999887532 21 233 36789999
Q ss_pred HHHHhcCCHHHHHHHHHcC
Q 039715 589 SLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~ 607 (805)
.+|..+|++++|+.++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999998764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00061 Score=57.60 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039715 564 GEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHIL 640 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 640 (805)
++..|+... ...| +...+..++..|.+.|++++|+..+++. ...| +...|..++.++...|++++|+..+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555554 2334 4556666677777777777777776654 2223 45678888888888888888888888888
Q ss_pred ccCCCC--cchHHHHHHHHHhcCChH
Q 039715 641 DFEPED--EATHVLLSNIYAMARSWE 664 (805)
Q Consensus 641 ~~~p~~--~~~~~~l~~~~~~~g~~~ 664 (805)
++.|++ ......+...+...|+..
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~ 106 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLARED 106 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhcccc
Confidence 887743 333444555555544433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0014 Score=69.87 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=64.3
Q ss_pred HHcCCCHHHHHHHHHHHHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCCH-HHHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYG--IEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI---------PFQPSV-MIWRA 618 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~ 618 (805)
+...|++++|+.++++..+... +.|+ ..+++.|+.+|...|++++|+.+++++ +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3345566666666655553211 1111 245666666666666666666666543 345654 46889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc-----cCCCCcchHHHH
Q 039715 619 LLGACIIHNNVEIGRLSAQHILD-----FEPEDEATHVLL 653 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~l 653 (805)
|...|..+|++++|+..++++++ +.|+++.+-..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999999999999999999887 578887665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0021 Score=71.39 Aligned_cols=133 Identities=9% Similarity=0.031 Sum_probs=110.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCC----------HHHHHHHHHHHHHhcCCCC-ChHHHHHHHHH
Q 039715 523 HGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGL----------LEQGEAYFKSMVANYGIEP-CIEHYTSMVSL 590 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 590 (805)
....++|++.++++++ +.|+.. .|+.--.++.+.|+ +++++..++.+.+. .| +...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3445788999999999 678765 45555555556666 89999999999864 45 56788888888
Q ss_pred HHhcC--CHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 591 LGRAG--HLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHN-NVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 591 ~~~~g--~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
+.+.| ++++|+++++++ ... .|...|+.-..++...| ..+++++.++++++.+|++..+|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 99999 779999999987 223 47889999999999999 899999999999999999999999999998885
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.003 Score=64.40 Aligned_cols=143 Identities=10% Similarity=-0.026 Sum_probs=89.0
Q ss_pred CCHhHHHHHHHHHH--hCCC---hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH----cCC-CHHHH---HHHHHHHHH
Q 039715 508 WNEVSWNAMISGYS--MHGL---SAEVLKVFDLMQQRGWRPNNL-TFVGVLSACS----NGG-LLEQG---EAYFKSMVA 573 (805)
Q Consensus 508 ~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~----~~g-~~~~a---~~~~~~m~~ 573 (805)
.+...|...+.+.. ..+. ..+|+.+|++.++ +.|+.. .+..+..++. ..+ .-... .+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46677777766543 2333 4789999999998 578743 4443333332 111 11111 112221111
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 574 NYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 574 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
.-....+..+|..+...+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|..+ +|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW 348 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence 1112336677777777777778888888888876 3457777777778888888899999988888988888654 4443
Q ss_pred H
Q 039715 653 L 653 (805)
Q Consensus 653 l 653 (805)
.
T Consensus 349 ~ 349 (372)
T 3ly7_A 349 I 349 (372)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0065 Score=53.23 Aligned_cols=109 Identities=13% Similarity=0.024 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHH
Q 039715 424 EVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK----CGSITDAR 499 (805)
Q Consensus 424 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~ 499 (805)
++++|++.|++..+.| .|+.. +...+...+.+++|.+.+....+.| +......|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 4444444455555666666555554 34455555555555 45555555
Q ss_pred HHhhhcCC-CCHhHHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 039715 500 LVFDMMND-WNEVSWNAMISGYSM----HGLSAEVLKVFDLMQQRG 540 (805)
Q Consensus 500 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 540 (805)
+.|++..+ .+..++..|...|.. .++.++|+..|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55554432 244455555555554 455555555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.003 Score=50.77 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 611 PSVMIWRALLGACIIHNN---VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 611 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|+..|..+..++...++ .++|...++++++++|+++.+...+|+++...|++++|..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 466777777777765554 6888888888888888888888888888888888888887
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00052 Score=54.86 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 64 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999987
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0024 Score=51.95 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=54.2
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH--HHHHHHHHh
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI-PFQP-SVM-IWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATH--VLLSNIYAM 659 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~ 659 (805)
.+..+.+.|++++|.+.++++ ...| +.. .|..++.++...|++++|+..++++++++|+++..+ ..+..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~ 83 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNF 83 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 455667778888888887765 2234 456 788888888889999999999999999999888877 444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0041 Score=50.88 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=39.7
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
+...|..+...|...|++++|+..|++.++. .| +...+..+..++...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666666677777777666663 34 344566666666666777777666666553
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0005 Score=71.13 Aligned_cols=418 Identities=11% Similarity=0.060 Sum_probs=247.4
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHH
Q 039715 123 ISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAF 202 (805)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 202 (805)
..|..|..+....|...+|++.|-+. -|+..|..++.++.+.|.+++-...+....+.. .++.+=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 35777777777777777776554221 355677777888888888777777766665553 4556667899999
Q ss_pred HhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHH
Q 039715 203 SVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVA 282 (805)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 282 (805)
++.+++.+-+..+. .||..-...+..-|...|.++.|+-+|..+- -|..
T Consensus 127 Ak~~rL~elEefl~----------------------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~ak 175 (624)
T 3lvg_A 127 AKTNRLAELEEFIN----------------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGR 175 (624)
T ss_dssp HTSCSSSTTTSTTS----------------------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTT
T ss_pred HhhCcHHHHHHHHc----------------------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHH
Confidence 99988775333332 4666666777777777777776666554321 1223
Q ss_pred HHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHH
Q 039715 283 LLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLG 362 (805)
Q Consensus 283 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 362 (805)
|...+.+.|++..|...-++ ..++.+|-.+-.+|+..+.+.-|.-.--.+. +.|| -+..++..|...|.+++-
T Consensus 176 LAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~EL 248 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEEL 248 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHH
Confidence 34445556666666544332 2478899999999999999887655443333 1222 233455667888888888
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC----C-------ChhhHHHHHHHHHHcCChHHHHHH
Q 039715 363 NQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK----R-------NHVTWNTMIVGYVQLGEVGKAMIM 431 (805)
Q Consensus 363 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~ 431 (805)
..+++.-+... .....+++-|.-.|+|- ++++-.+.++.... | ....|.-++-.|.+..+++.|...
T Consensus 249 IsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 249 ITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp TTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 88887766321 35677888888888886 45555555443222 1 455799999999998888877532
Q ss_pred -------------HHHHhhcCCCCChhh---------------HHHHHHHHhccCCchhHHHHHHHHHH----------c
Q 039715 432 -------------FSKMLEEQVPATEVT---------------YSSVLRACASLAALEPGMQVHCLTVK----------A 473 (805)
Q Consensus 432 -------------~~~m~~~g~~p~~~t---------------~~~ll~a~~~~~~~~~a~~~~~~~~~----------~ 473 (805)
|.+.... .+|... ++-||.++...=+...+.+++...-. -
T Consensus 327 Mi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~V 404 (624)
T 3lvg_A 327 MMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSV 404 (624)
T ss_dssp TTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSC
T ss_pred HHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHH
Confidence 1111110 122222 23445554444444444444432110 0
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC------------CCHhHHHHH-HHHHHhCCChHHHHHHHHHHHHcC
Q 039715 474 NYDMDVVVANALIDMYAKCGSITDARLVFDMMND------------WNEVSWNAM-ISGYSMHGLSAEVLKVFDLMQQRG 540 (805)
Q Consensus 474 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g 540 (805)
.-..+..+-.++-+.|....+++.-+.-.+.-.. .+..-+..+ ...|.+++++++++++.++ .+
T Consensus 405 q~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk 481 (624)
T 3lvg_A 405 QNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DS 481 (624)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TC
T ss_pred HHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---cc
Confidence 1123456677888888888887765554433221 122223222 3456778888888765432 11
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039715 541 WRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKL 603 (805)
Q Consensus 541 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 603 (805)
+ |.-.+...+.+|+.+-+.++++-..+. -+.+.+.+.+..+...=+.|-++++
T Consensus 482 l------ykDAietAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 482 L------YKDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp C------TTGGGTTTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred c------HHHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 1 122233445667777777777766654 2444555555555555566666665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0096 Score=49.07 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI-----P----FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
..-+-.|+..+.+.|+++.|..+++.+ + -.+...++..|..++.+.|+++.|+..++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 344455666666666776666666543 0 1234568899999999999999999999999999999988766
Q ss_pred HHH
Q 039715 652 LLS 654 (805)
Q Consensus 652 ~l~ 654 (805)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.19 Score=58.65 Aligned_cols=128 Identities=14% Similarity=0.149 Sum_probs=79.5
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChH
Q 039715 347 VSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVG 426 (805)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 426 (805)
..++..+.+.|..+.|.++.+ +. ..-.....++|++++|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 455555566666666655432 11 111344567899999999887764 5578999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 427 KAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 427 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
.|.+.|.++.. |..+...+...++.+....+-......|. ++.-..+|.+.|++++|.+++.
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998754 33444444445655555554444444331 2233344555666666666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.085 Score=61.69 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 039715 489 YAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYF 568 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 568 (805)
...+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 445677777777665553 456677777777777777777777776543 223333334455555544443
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 569 KSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 569 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
+..... | .++.-...|.+.|++++|++++.++
T Consensus 731 ~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 333221 1 1222334455566666666665444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.006 Score=49.54 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=46.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEPEDEA-THVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+..+...|++++|+..++++++.+|+++. .+..+|.+|...|++++|.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~ 56 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN 56 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 456678899999999999999999999999 99999999999999999988
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.027 Score=58.59 Aligned_cols=174 Identities=13% Similarity=0.085 Sum_probs=114.2
Q ss_pred hHHHHHhhchHHhhhhhccCCCCCCCCcccccCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 039715 20 KINAWLRGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLN 99 (805)
Q Consensus 20 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 99 (805)
.+.+.+..+....|+.++ .-.-|+..|..++.++.+.|.+++....+....+.. .++.+-+.|+-
T Consensus 60 LgkAqL~~~~v~eAIdsy-------------IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 60 LAKAQLQKGMVKEAIDSY-------------IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp HHHHTTTSSSCTTTTTSS-------------CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred HHHHHHccCchHHHHHHH-------------HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 445555555555555544 114466778999999999999999998877665553 45667788999
Q ss_pred HHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCC--------------------CCCCcch
Q 039715 100 VYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREG--------------------HELNPFA 159 (805)
Q Consensus 100 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~t 159 (805)
+|+|.+++.+-.+++ ..||+.--..+..-|...|.++.|.-+|..+.... -.-++.|
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 999999976644322 23676666777777777777777776666543211 1235668
Q ss_pred HHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 039715 160 FTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFD 216 (805)
Q Consensus 160 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 216 (805)
|-.+-.+|...+.+..|...--.++-. +| -...|+..|-+.|.+++-..+++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888888888776554333321 11 22345666777777766555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.028 Score=49.18 Aligned_cols=77 Identities=16% Similarity=0.033 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHcC-CCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 579 PCIEHYTSMVSLLGRAG---HLDKAAKLIEGI-PFQ-P--SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 579 p~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
++..+...+..+|.+.. ++++++.++++. ... | +...+-.|.-+|.+.|++++|++.++++++++|++..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34444444445555544 333555444433 111 3 2345666777889999999999999999999999987766
Q ss_pred HHHH
Q 039715 652 LLSN 655 (805)
Q Consensus 652 ~l~~ 655 (805)
..--
T Consensus 110 Lk~~ 113 (152)
T 1pc2_A 110 LERL 113 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.11 Score=52.85 Aligned_cols=73 Identities=8% Similarity=0.087 Sum_probs=52.2
Q ss_pred CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHH
Q 039715 507 DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHY 584 (805)
Q Consensus 507 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 584 (805)
..+...|.++...+...|++++|+..+++++.. .|+...|..+...+.-.|+.++|.+.|++.. .+.|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChH
Confidence 346667777776666678888888888888874 4776667666677777888888888887776 346666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.08 Score=42.29 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 039715 579 PCIEHYTSMVSLLGRAGH---LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 579 p~~~~~~~li~~~~~~g~---~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
+++..+..+..++...+. .++|..++++. ...| ++..+..++..+...|++++|+..++++++.+|+++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 466777777777765444 68888888765 3345 466788888889999999999999999999999843
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.18 E-value=6.1 Score=45.50 Aligned_cols=168 Identities=10% Similarity=0.032 Sum_probs=78.4
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHH--HHHHHHHhcCCH
Q 039715 418 GYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVAN--ALIDMYAKCGSI 495 (805)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~y~~~g~~ 495 (805)
.|+..|+.+-...++..+.+.. .-+...+..+.-++...|+.+.+..+.+.+.... .|...... ++.-+|+..|+.
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCH
T ss_pred hhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCH
Confidence 3445566555555665554421 1111122223333446677777777766665532 22222222 334456667776
Q ss_pred HHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHH
Q 039715 496 TDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLL-EQGEAYFKSM 571 (805)
Q Consensus 496 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m 571 (805)
....+++..+.+ .++...-.+.-|+...|+.+.+..+++.+.+.+ .|....-..+.-+....|.. .++...+..+
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 666666665542 133333333345555666665666665555432 33322222222222223322 4566666666
Q ss_pred HHhcCCCCChHHHHHHHHHHH
Q 039715 572 VANYGIEPCIEHYTSMVSLLG 592 (805)
Q Consensus 572 ~~~~~~~p~~~~~~~li~~~~ 592 (805)
.. +++..+-..-+.+++
T Consensus 656 ~~----D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 656 TK----DPVDFVRQAAMIALS 672 (963)
T ss_dssp HT----CSSHHHHHHHHHHHH
T ss_pred cc----CCCHHHHHHHHHHHH
Confidence 52 355544433333333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.83 E-value=1.1 Score=40.15 Aligned_cols=101 Identities=8% Similarity=0.133 Sum_probs=58.3
Q ss_pred HHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHH
Q 039715 388 YAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVH 467 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 467 (805)
..++|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45677777777776655 3556788888777778888877777777643 233333444455555444444
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhc
Q 039715 468 CLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMM 505 (805)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 505 (805)
......| -++.-...+.-.|+++++.++|.+.
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4443333 1223333344556666666666544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.028 Score=49.22 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEE
Q 039715 610 QPSVMIWRALLGACIIHN---NVEIGRLSAQHILDFE-P-EDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHY 684 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~ 684 (805)
.++..+.-.+.+++.+.+ +.++|+.+++.+++.+ | ++...+..|+-.|.+.|++++|.+ .
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~---------------y 93 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK---------------Y 93 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH---------------H
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH---------------H
Confidence 367888889999999887 6779999999999998 7 568899999999999999999998 0
Q ss_pred EeeCCCCCccHHHHHHHHHHHHHHHHHcCccc
Q 039715 685 FRAGDTSHADMNIIRGMLEWLNMKSRKAGYIP 716 (805)
Q Consensus 685 f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~ 716 (805)
|-..-...|...........+.+++.+.|.+-
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 00000122444444444455566777777653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.58 E-value=1 Score=40.33 Aligned_cols=128 Identities=11% Similarity=0.077 Sum_probs=82.1
Q ss_pred HHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHH
Q 039715 286 LYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQI 365 (805)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 365 (805)
....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888877765 3455688888888888888888888877643 34444455556776666666
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 039715 366 HSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKM 435 (805)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 435 (805)
-+.....| -++.....+...|+++++.++|.+...-... +......|..+.|.++..++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 55555554 2344455566778888888888765542211 11122256667777777665
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.13 Score=58.10 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=45.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 620 LGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 620 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..-|...|+++.|+.+++++...-|++-.+|..|+.+|...|+|+.|.-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 3457789999999999999999999999999999999999999999987
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.087 Score=51.38 Aligned_cols=55 Identities=9% Similarity=0.218 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CChHHHhh
Q 039715 614 MIWRALLGACII-----HNNVEIGRLSAQHILDFEPED-EATHVLLSNIYAMA-RSWEKAAS 668 (805)
Q Consensus 614 ~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a~~ 668 (805)
..|..|+..|.. -|+.++|.+.|+++++++|+. ..+++..++.|... |+.++|.+
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~ 261 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDE 261 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence 345555555555 367777777777777777753 67777777766663 66666655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.56 E-value=0.56 Score=39.33 Aligned_cols=77 Identities=14% Similarity=-0.038 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHhcCCHHH---HHHHHHcCC-CC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 579 PCIEHYTSMVSLLGRAGHLDK---AAKLIEGIP-FQ-P--SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 579 p~~~~~~~li~~~~~~g~~~e---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
|+..+--.+..+|.+..+..+ ++.+++++- .. | .....-.|.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555555556666666655544 566665542 11 2 1123455666788999999999999999999999987766
Q ss_pred HHHH
Q 039715 652 LLSN 655 (805)
Q Consensus 652 ~l~~ 655 (805)
+..-
T Consensus 113 Lk~~ 116 (126)
T 1nzn_A 113 LERL 116 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.45 E-value=2.6 Score=35.50 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 594 AGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 594 ~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|++....+-+-.+. .+....+--+.....+|+.++-.+++..++.-+|-+++..+-++++|.+.|...+|.+
T Consensus 74 C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 74 CQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp CSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 445554444444443 2333334445556666666666666666555555566666666666666666666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.57 Score=45.74 Aligned_cols=110 Identities=8% Similarity=0.042 Sum_probs=68.2
Q ss_pred CCHHHHHHHhhhcCCCC--HhHHHHHHH-HHHhC--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC
Q 039715 493 GSITDARLVFDMMNDWN--EVSWNAMIS-GYSMH--GL------SAEVLKVFDLMQQRGWRPN---NLTFVGVLSACSNG 558 (805)
Q Consensus 493 g~~~~A~~~~~~~~~~~--~~~~~~li~-~~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~ 558 (805)
|+..+-.+.+.+....+ ...|..++. +++.. |. ..+|..++++.++ +.|+ ...|..+...|...
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhC
Confidence 44444444455554333 345666654 33332 22 4567777777777 5676 44677777777773
Q ss_pred -----CCHHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHhc-CCHHHHHHHHHcC
Q 039715 559 -----GLLEQGEAYFKSMVANYGIEP--CIEHYTSMVSLLGRA-GHLDKAAKLIEGI 607 (805)
Q Consensus 559 -----g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~-g~~~eA~~~~~~~ 607 (805)
|+.++|.++|++.++ +.| +..++..+.+.|++. |+.++|.+.+++.
T Consensus 213 Pp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 788888888888773 456 366777777777774 7777777777754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.65 E-value=0.78 Score=37.25 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
.+..+..+|.+.|++++|+..+++..+
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344444455555555555555555544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=23 Score=39.03 Aligned_cols=259 Identities=7% Similarity=0.048 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccC
Q 039715 379 FVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLA 458 (805)
Q Consensus 379 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 458 (805)
..-+.-+..+.+.+++.....+|.. +..+...-.....+....|+..+|.....++-..| .........++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3444556667778888888887776 44455555566777788888888888888877665 233445566666666555
Q ss_pred CchhHH--HHHHHHHHcC-----------CCCcH-hHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHh---HHHHHHHHHH
Q 039715 459 ALEPGM--QVHCLTVKAN-----------YDMDV-VVANALIDMYAKCGSITDARLVFDMMNDWNEV---SWNAMISGYS 521 (805)
Q Consensus 459 ~~~~a~--~~~~~~~~~~-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~ 521 (805)
.+.... +=...+...| ++++. .....++..+.+-..+ ....... .++.. ....-+.-++
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 543322 1112222221 11111 1122233222222222 1111111 11111 1111122233
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCH
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRPNNLTFVG----VLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHL 597 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 597 (805)
+ .+.+.|..+|......+ ..+...... +.......+...++...+...... .++.....-.+....+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 37899999999887643 233332222 222233445355666666665432 23443344444455578999
Q ss_pred HHHHHHHHcCCCCC-C-H--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 598 DKAAKLIEGIPFQP-S-V--MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 598 ~eA~~~~~~~~~~p-~-~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
+.|...|+.|+..+ + . .-|. ..+....|+.++|...++++.+ + ...|-.|+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~--~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQ--ADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHH--HHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHHHHccccccccHhHHHHH--HHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 99999999997432 2 2 2343 3356678999999999999985 3 24565553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.63 E-value=7 Score=32.95 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=54.8
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHH
Q 039715 390 KCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCL 469 (805)
Q Consensus 390 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 469 (805)
.||++......|-.+.. +....+.-+..++.+|.-++-.+++.++.. +.+|+......+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34455554444444332 223345556777778888887778777544 3466677777777888888888888888887
Q ss_pred HHHcCCC
Q 039715 470 TVKANYD 476 (805)
Q Consensus 470 ~~~~~~~ 476 (805)
+.+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 7777753
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.22 E-value=15 Score=36.29 Aligned_cols=167 Identities=10% Similarity=0.055 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHhhcCCCCChhhHHHHHHHHhcc
Q 039715 382 NALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIM----FSKMLEEQVPATEVTYSSVLRACASL 457 (805)
Q Consensus 382 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~ 457 (805)
.++..=|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3445557788888888887533 23345556776555543 44445567778877777777666553
Q ss_pred CCch-hHHHHHHHHHH----cC--CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhC---CChH
Q 039715 458 AALE-PGMQVHCLTVK----AN--YDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMH---GLSA 527 (805)
Q Consensus 458 ~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~ 527 (805)
..-+ .=.++...+++ .| ..-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3222 12233344432 32 2247788999999999999999999988633322455555554433333 3333
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 039715 528 EVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVAN 574 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 574 (805)
++- ...-..++ -|.-.|++..|...|+...++
T Consensus 186 e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TVA--------------EFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 221 11112222 244568999999998877654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.73 E-value=2.3 Score=37.42 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGIPF 609 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~~~ 609 (805)
.+.---+...|.+.|+.++|+.+++.+|.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 34434456677777777777777777763
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.20 E-value=43 Score=38.68 Aligned_cols=249 Identities=8% Similarity=-0.045 Sum_probs=130.3
Q ss_pred HHHhcCChHHHHHHHhcCCC----CCh--hhHHHHHHHHHHcCChHHHHHHHHHHhhcCC--C-----CChhhHHHHHHH
Q 039715 387 VYAKCGRMENSVELFAESPK----RNH--VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQV--P-----ATEVTYSSVLRA 453 (805)
Q Consensus 387 ~y~~~g~~~~A~~~f~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~t~~~ll~a 453 (805)
+....|+.++++.+++.... .+. ..-..+.-|....|..++++.++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567888899999987554 222 2233344556667776778888777665321 0 111111222222
Q ss_pred HhccCC-chhHHHHHHHHHHcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CHhHHHHHHHHHHhCCChHH
Q 039715 454 CASLAA-LEPGMQVHCLTVKANYD-MDVVVANALIDMYAKCGSITDARLVFDMMND--W-NEVSWNAMISGYSMHGLSAE 528 (805)
Q Consensus 454 ~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 528 (805)
.+..|. -+++...+..++...-. ......-+|.-.|.-.|+-+....++..+.+ . ++.-.-++.-|+...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 222332 23444444444443211 0012233455556677887777777765432 2 23333444556668899999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHH---HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 529 VLKVFDLMQQRGWRPNNL-TFV---GVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 529 A~~l~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
+..+.+.+... .|.. -|. .+.-+|+..|+.....++++.+..+ ...++.-...+.-++.-.|..+.+.+++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 98888888773 3333 333 3345678889988777788887753 2223332333333333466666666666
Q ss_pred HcCCCCCCHHHHHHHHHHHHH--cCC-HHHHHHHHHHHh
Q 039715 605 EGIPFQPSVMIWRALLGACII--HNN-VEIGRLSAQHIL 640 (805)
Q Consensus 605 ~~~~~~p~~~~~~~l~~~~~~--~g~-~~~a~~~~~~~~ 640 (805)
+.+....|+.+-.....++.. .|+ ..+++..+.++.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 644323344333222222222 222 245555666554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.44 E-value=31 Score=36.30 Aligned_cols=96 Identities=10% Similarity=0.101 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCCC----h
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN-----LTFVGVLSACSNGGLLEQGEAYFKSMVAN-YGIEPC----I 581 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~----~ 581 (805)
....|...|...|++.+|..++.++...-...+. ..+...+..|...+++.+|..++.++... +...+. .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888899999999999988753222222 24566677788999999999999887532 122222 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
..|.+++..+...+++.+|-+.|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56788899999999999998877654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.84 E-value=14 Score=31.92 Aligned_cols=97 Identities=8% Similarity=0.170 Sum_probs=55.3
Q ss_pred CCChhhHHHHHHHHHHcCCh------HHHHHHHHHHhhcCCCCChh----hHHHHHHH---HhccCCchhHHHHHHHHHH
Q 039715 406 KRNHVTWNTMIVGYVQLGEV------GKAMIMFSKMLEEQVPATEV----TYSSVLRA---CASLAALEPGMQVHCLTVK 472 (805)
Q Consensus 406 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~a---~~~~~~~~~a~~~~~~~~~ 472 (805)
..|..+|-..+...-+.|++ ++.+++|++.... ++|+.. .|..+.-- +...++++.|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888888888888888 7888888887764 556532 12111111 1223667777777776665
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhh
Q 039715 473 ANYDMDVVVANALIDMYAKCGSITDARLVFDM 504 (805)
Q Consensus 473 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 504 (805)
.. ..-..++......-.+.|++..|++++.+
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 42 22244444444444445555555544443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.59 E-value=9.5 Score=30.01 Aligned_cols=87 Identities=11% Similarity=0.055 Sum_probs=62.5
Q ss_pred CCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHh
Q 039715 357 EGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKML 436 (805)
Q Consensus 357 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 436 (805)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||.+.|-++-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345677777777766553 333333344567789999999999999999999999888654 6788888888887887
Q ss_pred hcCCCCChhhHH
Q 039715 437 EEQVPATEVTYS 448 (805)
Q Consensus 437 ~~g~~p~~~t~~ 448 (805)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 765 44444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.54 E-value=28 Score=34.75 Aligned_cols=125 Identities=13% Similarity=0.026 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhh-----ccccHHHHHHHH----HHHHHCCCCCChhhHHHHHHHhhCCCCHH-----HHH
Q 039715 197 ALIDAFSVCGCVEFARKVFDGL-----FNDCFEEALNFF----SQMRAVGFKPNNFTFAFVLKACLGLDTIR-----VAK 262 (805)
Q Consensus 197 ~li~~y~~~g~~~~A~~~~~~~-----~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-----~a~ 262 (805)
++..=|.+.+++++|..++-.- +.|....|-++- +-+.+.++++|..+...++..+.....-+ -..
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~ 119 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVK 119 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 4444566777777777765433 455554444444 45556788888888888877777655321 122
Q ss_pred HHHHHHHHhC--CCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhC
Q 039715 263 SAHGCALKTC--YEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQT 321 (805)
Q Consensus 263 ~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 321 (805)
+....-.+.| ..-|+.....+...|.+.+++.+|+.-|-.-....+..+..|+--+...
T Consensus 120 ~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 120 EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 2333333444 3446777788888899999999998888532222224454444444333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.04 E-value=28 Score=34.39 Aligned_cols=132 Identities=8% Similarity=0.116 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhHHHHHHHHHhc
Q 039715 280 AVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVEL----FCRMRQAFVAPNQFTFVSVLQACAT 355 (805)
Q Consensus 280 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 355 (805)
+.++..=|.+.+++++|..++..- ...+.+.|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 335566678888888888876542 3455666776665554 4445566788888888877777655
Q ss_pred cCCch-HHHHHHHHHH----HhCC--CccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 039715 356 MEGLD-LGNQIHSLVV----RVGL--LSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQL 422 (805)
Q Consensus 356 ~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 422 (805)
...-+ .=..+.+.++ +.|- .-|+.....+...|.+.|++.+|+..|-.-...|...+..|+.-+...
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 33211 1233333333 3331 236778888888999999999998887633323455555554444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.74 E-value=30 Score=34.46 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=95.7
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHhhcCCCCChhhHHHHHHHHhccC
Q 039715 383 ALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIM----FSKMLEEQVPATEVTYSSVLRACASLA 458 (805)
Q Consensus 383 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~~ 458 (805)
++..=|.+.+++++|++++-. -...+.+.|+...|-++ ++-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 444557888888888887533 23345556666554443 344455677788777777777666554
Q ss_pred CchhH-HHHHHHHH----HcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHH
Q 039715 459 ALEPG-MQVHCLTV----KAN--YDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLK 531 (805)
Q Consensus 459 ~~~~a-~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 531 (805)
.-+.. ..+...++ +.| ..-|+.....+...|.+.+++.+|+..|-.-....+..+..|+.-+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--- 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--- 185 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence 32211 22233333 233 334778888999999999999999998843222223455444443333322111
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 532 VFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 532 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
+|...-..++ -|...+++..|...++...+
T Consensus 186 -----------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -----------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34556889999888777664
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.37 E-value=9 Score=30.10 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=62.7
Q ss_pred CCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHh
Q 039715 357 EGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKML 436 (805)
Q Consensus 357 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 436 (805)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||.++|-++-.. +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345677777777766553 333333344567789999999999999999999999888654 6788888888888887
Q ss_pred hcCCCCChhhHH
Q 039715 437 EEQVPATEVTYS 448 (805)
Q Consensus 437 ~~g~~p~~~t~~ 448 (805)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 44444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.85 E-value=14 Score=31.49 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHhcCCHH---HHHHHHHcC-CCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 579 PCIEHYTSMVSLLGRAGHLD---KAAKLIEGI-PFQP-SV-MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 579 p~~~~~~~li~~~~~~g~~~---eA~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
|+..+--.+..++.+..+.+ +++.+++.+ ...| +. ...--|.-++.+.|++++|.+..+.+++.+|+|..+..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 44444444455555544332 344444433 1122 22 234455667889999999999999999999998776554
Q ss_pred HH
Q 039715 653 LS 654 (805)
Q Consensus 653 l~ 654 (805)
..
T Consensus 117 k~ 118 (144)
T 1y8m_A 117 KS 118 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=84.79 E-value=7.3 Score=33.59 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCCHhHHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHHH---HHcCCCHHHHHHHHHHHHH
Q 039715 507 DWNEVSWNAMISGYSMHGLS------AEVLKVFDLMQQRGWRPNNL----TFVGVLSA---CSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 507 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~a---~~~~g~~~~a~~~~~~m~~ 573 (805)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.-- +...+++++|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44777777777777777777 7777777777664 555421 11111100 1111344444444444332
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 574 NYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 574 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
. .+.-+.+|-....--.++|++..|.+++.+++++.|..
T Consensus 89 ~----------------------------------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 N----------------------------------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp H----------------------------------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred H----------------------------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 1 01125667766666677888888888888888888754
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.21 E-value=9.1 Score=30.05 Aligned_cols=86 Identities=15% Similarity=0.048 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQR 539 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 539 (805)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-++.. .+.|..+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555554442 22222233445667899999999999999999999988754 4678888888888788777
Q ss_pred CCCCCHHHHHH
Q 039715 540 GWRPNNLTFVG 550 (805)
Q Consensus 540 g~~p~~~t~~~ 550 (805)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.76 E-value=9.7 Score=29.96 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQR 539 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 539 (805)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-++.. .+.|..+++..-+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555554442 22222233345667899999999999999999999988754 3567777777777777766
Q ss_pred CCCCCHHHHH
Q 039715 540 GWRPNNLTFV 549 (805)
Q Consensus 540 g~~p~~~t~~ 549 (805)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 45444444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.26 E-value=13 Score=31.76 Aligned_cols=92 Identities=8% Similarity=-0.055 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEE
Q 039715 610 QPSVMIWRALLGACIIHN---NVEIGRLSAQHILDFEPE-DEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYF 685 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f 685 (805)
.|+..+--.+.+++.+.. +..+++.+++.++...|+ .-.....|+-.+.+.|++++|.+-.. .+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d------------~l 103 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD------------TL 103 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH------------HH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH------------HH
Confidence 567777777777877766 456899999999998884 45677889999999999999998000 00
Q ss_pred eeCCCCCccHHHHHHHHHHHHHHHHHcCccc
Q 039715 686 RAGDTSHADMNIIRGMLEWLNMKSRKAGYIP 716 (805)
Q Consensus 686 ~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~ 716 (805)
+ ...|....+......+.++|.++|.+-
T Consensus 104 L---~~eP~n~QA~~Lk~~Ie~~i~kdGliG 131 (144)
T 1y8m_A 104 F---EHERNNKQVGALKSMVEDKIQKETLKG 131 (144)
T ss_dssp H---HTCCCCHHHHHHHHHHHHHHHHTTTTT
T ss_pred H---hcCCCcHHHHHHHHHHHHHHHHhchhh
Confidence 0 122434444444445567788887653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.04 E-value=15 Score=30.82 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
..+--|.-++.+.|++++|.+..+.+++.+|+|..+..+.
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3455666778899999999999999999999987765544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=82.43 E-value=18 Score=30.23 Aligned_cols=66 Identities=9% Similarity=-0.067 Sum_probs=32.1
Q ss_pred CcHhHHHHHHHHHHhcCCHHH---HHHHhhhcCCCC-H----hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039715 477 MDVVVANALIDMYAKCGSITD---ARLVFDMMNDWN-E----VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN 544 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~---A~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 544 (805)
++..+-..+..++.+.....+ ++.+++.+.+.+ + ...-.|.-++.+.|++++|.+.++.+++ +.|+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCC
Confidence 344444444444555444443 445554444322 1 1223344556666666666666666666 4554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.35 E-value=49 Score=33.97 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=27.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~ 605 (805)
++..|...|++.+|..++..+.+...-..+ .+.|..-+.+|...|++.++...+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 444555556666665555555543211111 2344445555556666666555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.19 E-value=9.3 Score=39.59 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hcCCCCChHHH
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA----NYGIEPCIEHY 584 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 584 (805)
..++..+...|++.+|+..+..+... .| +...+..++.++...|+..+|++.|+.+.+ ..|++|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44566677788888888888888773 44 666888888888888888888888877644 45888887653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 805 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.05 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.02 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.0 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.82 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.75 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.62 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.43 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.42 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.38 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.35 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.32 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.14 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.11 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.1 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.06 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.01 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.97 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.92 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.88 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.86 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.86 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.84 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.83 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.79 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.57 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.56 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.47 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.4 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.36 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.29 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.28 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.27 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.18 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.78 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.89 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.26 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.55 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.3 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.03 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.16 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.72 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 86.84 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.3e-20 Score=199.94 Aligned_cols=344 Identities=10% Similarity=0.063 Sum_probs=233.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 039715 311 WSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAK 390 (805)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 390 (805)
|..+...|.+.|++++|+..|++..+.. +-+..++..+...+...|++++|...+....+... .+..........+..
T Consensus 36 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 113 (388)
T d1w3ba_ 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccc-ccccccccccccccc
Confidence 4444444444444444444444444321 11223344444444444444444444444444331 122222222222333
Q ss_pred cCChHHHHHHHhc---CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHH
Q 039715 391 CGRMENSVELFAE---SPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVH 467 (805)
Q Consensus 391 ~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 467 (805)
.+....+...... ........+..........+....+...+.+..... +-+...+..+...+...|..+.|...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 192 (388)
T d1w3ba_ 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHF 192 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHH
Confidence 3333333222221 112233344444555555666666666666665532 223345555666667777777777777
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039715 468 CLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN 544 (805)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 544 (805)
...++.. +.+...+..+...|...|++++|...|++.. ..+...|..+...+...|++++|+..|++..+ +.|+
T Consensus 193 ~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~ 269 (388)
T d1w3ba_ 193 EKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPH 269 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSS
T ss_pred HHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCC
Confidence 7776654 3456778888888999999999999888765 34677888899999999999999999999998 5665
Q ss_pred -HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHH
Q 039715 545 -NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLG 621 (805)
Q Consensus 545 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~ 621 (805)
..++..+..++...|++++|.+.++..... .+.+...+..++..|.+.|++++|++.+++. ...|+ ..+|..++.
T Consensus 270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 347 (388)
T d1w3ba_ 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 557888889999999999999999998754 3446788889999999999999999999975 45664 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 622 ACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 622 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
+|...|++++|+..++++++++|+++.+|..||++|.+.|+
T Consensus 348 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.9e-20 Score=194.70 Aligned_cols=373 Identities=12% Similarity=0.063 Sum_probs=298.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 039715 314 MIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGR 393 (805)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 393 (805)
+...+.+.|++++|+..|+++.+.. +-+...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4456778899999999999998753 2246677788888999999999999999999886 4567889999999999999
Q ss_pred hHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHH
Q 039715 394 MENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLT 470 (805)
Q Consensus 394 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 470 (805)
+++|...+....+ .+...+..........+....+............ ................+....+.......
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 9999999987653 3444555566666666777777766666655433 33334444555566677777777777777
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 039715 471 VKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT 547 (805)
Q Consensus 471 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 547 (805)
.... +.+...+..+...+...|++++|...+++.. ..+...|..+...+...|++++|+..|++....+ ..+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 6654 4467788889999999999999999998775 3467789999999999999999999999998853 345567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI--PFQPSVMIWRALLGACI 624 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~l~~~~~ 624 (805)
+..+..++...|++++|...|+++.+ +.| +...+..++..|.+.|++++|.+.++.. ..+.+...+..+...+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 78888899999999999999999884 456 4678999999999999999999999866 12356788999999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHH
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEW 704 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 704 (805)
..|++++|+..+++++++.|+++.++..+|.+|...|++++|.+ .|...-..+|...+++..|..
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---------------~~~~al~l~P~~~~a~~~lg~ 381 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM---------------HYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH---------------HHHHHHTTCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH---------------HHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 111111345766777777777
Q ss_pred HHHHH
Q 039715 705 LNMKS 709 (805)
Q Consensus 705 l~~~~ 709 (805)
+..+|
T Consensus 382 ~~~~~ 386 (388)
T d1w3ba_ 382 TLKEM 386 (388)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 65544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.7e-13 Score=139.06 Aligned_cols=247 Identities=11% Similarity=0.042 Sum_probs=160.1
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 039715 416 IVGYVQLGEVGKAMIMFSKMLEEQVPAT-EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGS 494 (805)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 494 (805)
...+.+.|++++|+..|++.++. .|+ ..++..+..++...|+++.|...+..+++.. +.+...+..+...|...|+
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 33444455555555555554443 222 2244444444455555555555555444443 2234455555555666666
Q ss_pred HHHHHHHhhhcCCC------------------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Q 039715 495 ITDARLVFDMMNDW------------------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW-RPNNLTFVGVLSAC 555 (805)
Q Consensus 495 ~~~A~~~~~~~~~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~ 555 (805)
+++|.+.+++.... +.......+..+...+.+.+|.+.|.+..+... .++...+..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 66666555544311 111111222334455677889999998887432 22456777888889
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 632 (805)
...|++++|+..|+..... .| +...|..++..|.+.|++++|.+.++++ ...| +..+|..++.+|...|++++|
T Consensus 183 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998854 45 4678889999999999999999999875 3345 567899999999999999999
Q ss_pred HHHHHHHhccCCCCcch-----------HHHHHHHHHhcCChHHHhh
Q 039715 633 RLSAQHILDFEPEDEAT-----------HVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 633 ~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~ 668 (805)
+..++++++++|++... +..++.++...|+++.+..
T Consensus 260 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 260 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999987654 3456778888888876543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4e-13 Score=137.79 Aligned_cols=217 Identities=12% Similarity=0.067 Sum_probs=181.1
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCC
Q 039715 449 SVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGL 525 (805)
Q Consensus 449 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 525 (805)
.....+.+.|++++|...++.+++.. +.+..++..+..+|...|++++|...|++..+ .+...|..++..|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 44556789999999999999999876 45788899999999999999999999998763 367899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 526 SAEVLKVFDLMQQRGWRPNNLT----------------FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 526 ~~~A~~l~~~m~~~g~~p~~~t----------------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
+++|++.+++... +.|+... ....+..+...+...++...|....+...-.++...+..++.
T Consensus 103 ~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHH--hccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 9999999999987 3443211 111122334456678888988888755333446778899999
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 590 LLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 590 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
.+.+.|++++|+..+++. ...| +...|..++..+...|++++|+..++++++++|+++.++..||.+|...|++++|.
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999875 2344 57789999999999999999999999999999999999999999999999999998
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
+
T Consensus 261 ~ 261 (323)
T d1fcha_ 261 E 261 (323)
T ss_dssp H
T ss_pred H
Confidence 8
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.4e-08 Score=104.30 Aligned_cols=188 Identities=11% Similarity=-0.005 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC-------C----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC----CH
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMND-------W----NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP----NN 545 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~ 545 (805)
.+..+...|...|++..|...+..... + ....+..+...+...|+++++...+.+........ ..
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 344556667777777777776665431 1 12345566677788888888888888877642221 22
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCC-----CHH
Q 039715 546 LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAKLIEGIP-FQP-----SVM 614 (805)
Q Consensus 546 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p-----~~~ 614 (805)
.++......+...|...++...+........-... ...+..+...+...|++++|...+++.. ..| ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 34555556677778888888887776544322221 2345566677888899999988887652 111 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc------cCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILD------FEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+..+..++...|++++|...+++++. ..|+...++..++.+|...|++++|.+
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 567778888889999999998888874 445666788889999999999999877
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.3e-08 Score=104.49 Aligned_cols=188 Identities=5% Similarity=-0.089 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC--------CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCC----HH
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMND--------WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG--WRPN----NL 546 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~ 546 (805)
.+..+...|...|+++.|...+..... .....+..+...+...|+..++...+.+..... .... ..
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 455566777788888888877766541 133455666677778888888888877765421 1111 12
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC-HHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP--CIEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPS-VMIW 616 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~ 616 (805)
.+..+...+...|+.++|...++.......-.+ ....+..+...|...|++++|...++++ ...|+ ...|
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 344555567788999999988877653211111 2345666788899999999999888754 33343 3468
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCC--c-------chHHHHHHHHHhcCChHHHhh
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILDFEPED--E-------ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~-------~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+...|...|+.++|+..+++++++.+.. . ..+..+...+...|+.+++.+
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 888889999999999999999998875422 1 223334445666677777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=2.5e-09 Score=104.76 Aligned_cols=220 Identities=9% Similarity=-0.082 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 039715 425 VGKAMIMFSKMLEEQVPAT---EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLV 501 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 501 (805)
.+.|+.-+++........+ ..++..+...+.+.|++++|...|...++.. +.+..+++.+..+|.+.|++++|++.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555544321111 1245555566677777777777777777654 44677888899999999999999999
Q ss_pred hhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Q 039715 502 FDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI 577 (805)
Q Consensus 502 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 577 (805)
|+++.+ .+..+|..++..|...|++++|++.|++..+. .|+ ......+..++...+..+....+...... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 168 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---S 168 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---S
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---c
Confidence 988863 35678889999999999999999999999884 454 33433344444555555555555544442 2
Q ss_pred CCChHHHHHHHHHHHh----cCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 578 EPCIEHYTSMVSLLGR----AGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 578 ~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
.+....++. +..+.. .+..+++...+... ...|+ ..+|..++..+...|++++|+..++++++.+|++...|.
T Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 169 DKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred chhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 333323322 222222 22233333332221 11233 346788899999999999999999999999998865543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=7.7e-10 Score=113.29 Aligned_cols=229 Identities=9% Similarity=-0.045 Sum_probs=167.5
Q ss_pred HcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccC--CchhHHHHHHHHHHcCCCCcHhHH-HHHHHHHHhcCCHHH
Q 039715 421 QLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLA--ALEPGMQVHCLTVKANYDMDVVVA-NALIDMYAKCGSITD 497 (805)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~ 497 (805)
..|++++|+.++++..+.. +-+...+..+..++...+ +.+++...+..+++.... +...+ ..+...+...|..++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHH
Confidence 3455778888888877653 223334555555555554 467788888888776533 34443 455677888999999
Q ss_pred HHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 039715 498 ARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVAN 574 (805)
Q Consensus 498 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 574 (805)
|...++.+.+. +..+|+.+...+.+.|++++|...+++..+ +.|+... +...+...+..+++...+......
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKELE---LVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHHH---HHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHHH---HHHHHHHhcchhHHHHHHHHHHHh
Confidence 99999988743 678999999999999999988777766555 2333222 223344556677788888777643
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 575 YGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 575 ~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
-.++...+..++..+...|+.++|.+.+.+. +..|+ ..+|..++..+...|+.++|+..++++++++|++...|..
T Consensus 238 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 238 --RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp --CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred --CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 2334556667778888899999999988865 55564 4688999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 039715 653 LSNIYA 658 (805)
Q Consensus 653 l~~~~~ 658 (805)
|+..+.
T Consensus 316 L~~~~~ 321 (334)
T d1dcea1 316 LRSKFL 321 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988776
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.6e-09 Score=109.32 Aligned_cols=192 Identities=9% Similarity=0.046 Sum_probs=93.9
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHhhhcC---CCCHhHHHHHHHHHHh
Q 039715 447 YSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG-SITDARLVFDMMN---DWNEVSWNAMISGYSM 522 (805)
Q Consensus 447 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 522 (805)
++.+...+.+.+..++|.+.+..+++.+ |.+..+|+....++...| ++++|+..+++.. ..+..+|+.+...+..
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh
Confidence 3334444445555555555555555554 334445555555555544 2555555555543 2245555555555555
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC----
Q 039715 523 HGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH---- 596 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~---- 596 (805)
.|++++|++.++++++ +.|+ ...|..+...+.+.|++++|+..++.+++ +.| +...|+.+..++.+.|.
T Consensus 125 l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 125 LRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred hccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchh
Confidence 5555555555555555 3332 33555555555555555555555555552 233 33444444444444333
Q ss_pred --HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 597 --LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 597 --~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
+++|++.+.++ ...| +...|..+...+.. ...+++...+++++++.|+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPS 251 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTT
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCC
Confidence 34444444432 2222 34445544444332 2234555555555555554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=3.7e-08 Score=99.04 Aligned_cols=187 Identities=8% Similarity=0.017 Sum_probs=151.1
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---C-HhHHHHHHHHHHhCCChHHHHHHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---N-EVSWNAMISGYSMHGLSAEVLKVFD 534 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~l~~ 534 (805)
..+++..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+. + ...|...+..+.+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45678888888887666667788899999999999999999999987632 3 4479999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC----CC
Q 039715 535 LMQQRGWRPNNLTFVGVLSA-CSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI----PF 609 (805)
Q Consensus 535 ~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~ 609 (805)
++++.+. .+...|...... +...|+.+.|..+|+.+.+.+ ..+...|...++.+.+.|++++|+.+|++. +.
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9998542 233344443332 345689999999999999753 335788999999999999999999999975 33
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 610 QPS--VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 610 ~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.|+ ..+|...+..-..+|+.+.+..+.+++.++.|++..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 443 568999999989999999999999999999987644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=7.2e-08 Score=96.92 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcC-ChHHHHHHHHHHhhcCCCCChhhHHHHHHHHh
Q 039715 380 VSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLG-EVGKAMIMFSKMLEEQVPATEVTYSSVLRACA 455 (805)
Q Consensus 380 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 455 (805)
+++.+...+.+.+..++|+.+++.+.+ .+...|+.....+...| ++++|+..+++..+.. +-+..+|......+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHH
Confidence 344444455555555555555555432 23445555555555544 3566666666655532 112334555555555
Q ss_pred ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCC------h
Q 039715 456 SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGL------S 526 (805)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~------~ 526 (805)
..|++++|...+..+++.. +.+..+|+.+...|.+.|++++|++.|+++.+ .+...|+.+...+...+. +
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~ 202 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 202 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhh
Confidence 5555555555555555543 33455555556666666666666666655542 244555555555544443 4
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 039715 527 AEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMV 572 (805)
Q Consensus 527 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 572 (805)
++|++.+.+.++ +.|+ ...+..+...+... ..+++...++...
T Consensus 203 ~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 203 EREVQYTLEMIK--LVPHNESAWNYLKGILQDR-GLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHH
T ss_pred HHhHHHHHHHHH--hCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 566666666666 3443 33444444444333 3455555555554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=1.3e-08 Score=99.52 Aligned_cols=184 Identities=13% Similarity=0.036 Sum_probs=134.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSA 554 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 554 (805)
..++..+..+|.+.|++++|.+.|++.. ..++.+|+.+..+|.+.|++++|++.|+++++ +.|+ ..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHH
Confidence 3567788999999999999999999886 34788999999999999999999999999999 4564 5578888899
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCCCHHHHHHHHHHHH----HcCC
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP-FQPSVMIWRALLGACI----IHNN 628 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~l~~~~~----~~g~ 628 (805)
+...|++++|...|+...+. .| +......+...+.+.+..+.+..+..... ..++...++. +..+. ..+.
T Consensus 115 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTL 190 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHH
Confidence 99999999999999998854 45 34444444555556665555554443221 1122222222 12221 2233
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+.+...+.......|+...+|..||.+|...|++++|.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 230 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 230 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555566778778889999999999999999988
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=9.4e-07 Score=88.39 Aligned_cols=181 Identities=13% Similarity=0.056 Sum_probs=89.3
Q ss_pred hHHHHHHHhcC----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHH
Q 039715 394 MENSVELFAES----PKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCL 469 (805)
Q Consensus 394 ~~~A~~~f~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 469 (805)
.++|..+|++. ...+...|...+..+...|+.++|..+|++++..........|...+..+.+.|+.+.|++++..
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34555555542 22344456666666666666666666666665432222222445555555555566666666655
Q ss_pred HHHcCCCCcHhHHHHHHHH-HHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCC
Q 039715 470 TVKANYDMDVVVANALIDM-YAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG-WRPN 544 (805)
Q Consensus 470 ~~~~~~~~~~~~~~~li~~-y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 544 (805)
+++.+. .+...+...... +...|+.+.|..+|+.+.+ .+...|...+..+...|+.++|..+|++..... ..|+
T Consensus 160 al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 555432 222222222222 2233555555555555542 244455555555555555555555555555432 2222
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 039715 545 --NLTFVGVLSACSNGGLLEQGEAYFKSMVANY 575 (805)
Q Consensus 545 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 575 (805)
...|...+.--...|+.+.+..+++++.+.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 1234444444344455555555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.63 E-value=1.7e-07 Score=95.34 Aligned_cols=218 Identities=7% Similarity=-0.047 Sum_probs=141.7
Q ss_pred hCCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccC--CchHHHHHHHHHHHhCCCccHHHH-HHHHHHHHhcCChH
Q 039715 320 QTDLSIDAVELFCRMRQAFVAP-NQFTFVSVLQACATME--GLDLGNQIHSLVVRVGLLSDVFVS-NALMDVYAKCGRME 395 (805)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~~y~~~g~~~ 395 (805)
..|++++|+.+|+...+. .| +...+.....++...+ +.+++...+..+++... .+...+ ..+...+...|..+
T Consensus 85 ~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 85 SAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccH
Confidence 344567788888887764 33 3444555555555544 46788888888887753 334443 44556777788899
Q ss_pred HHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHH
Q 039715 396 NSVELFAESPKR---NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVK 472 (805)
Q Consensus 396 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 472 (805)
+|+..++...+. +..+|+.+...+.+.|++++|...+.+.... .|+. ..+...+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999988887653 5667888888888888888776555444332 1111 1223334555666777777776666
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCC---HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 039715 473 ANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWN---EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTF 548 (805)
Q Consensus 473 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 548 (805)
.. +++...+..++..+...|+.++|...|.+..+.+ ..+|..++..|...|++++|++.|++..+ +.|+...|
T Consensus 237 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y 312 (334)
T d1dcea1 237 GR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAY 312 (334)
T ss_dssp SC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHH
T ss_pred hC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHH
Confidence 54 3344455566667777777888888877777554 34666677777777888888888887777 56765443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=4.8e-07 Score=83.22 Aligned_cols=144 Identities=8% Similarity=-0.054 Sum_probs=103.9
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHH
Q 039715 486 IDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 564 (805)
...+...|+++.|++.|+++..++...|..+..+|...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 45577889999999999999888888999999999999999999999999998 4564 55788888889999999999
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 565 EAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 565 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
...|++.... ..++... .|...| +..+.+ ..++..+..++...|++++|.+.+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999887742 1111100 000000 011122 2355667777788888888888888888887
Q ss_pred CCCcchH
Q 039715 644 PEDEATH 650 (805)
Q Consensus 644 p~~~~~~ 650 (805)
|+.....
T Consensus 151 ~~~~~~~ 157 (192)
T d1hh8a_ 151 SEPRHSK 157 (192)
T ss_dssp CSGGGGH
T ss_pred CCcchHH
Confidence 7654433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.9e-07 Score=78.10 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=85.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~ 628 (805)
...+...|++++|+..|+..++. .| +...|..+..+|.+.|++++|+..+++. ... .++..|..++.++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 45577788888888888888743 45 5677888888888888888888888765 223 467889999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLLSNIYA 658 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 658 (805)
+++|+..++++++++|+++.++..++++.+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999999999888754
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=1.6e-07 Score=78.63 Aligned_cols=83 Identities=11% Similarity=0.112 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSW 663 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 663 (805)
.-+..+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+|.+|...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3467788999999999999976 3344 6778999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
++|.+
T Consensus 88 ~~A~~ 92 (117)
T d1elwa_ 88 EEAKR 92 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=3e-07 Score=85.53 Aligned_cols=117 Identities=9% Similarity=-0.035 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHH
Q 039715 543 PNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRAL 619 (805)
Q Consensus 543 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l 619 (805)
|+...+......+...|++++|+..|+.++.. .| +...|..++.+|.+.|++++|+..|+++ .+.|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 56666667777777777777777777777643 34 4566777777777777777777777754 44553 5567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 620 LGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 620 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
+.+|...|++++|+..++++++++|++...+..++..+...++
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 121 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777655554444444444333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=3.3e-06 Score=83.44 Aligned_cols=187 Identities=9% Similarity=-0.045 Sum_probs=129.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--HHH
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMND-----WN----EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW---RPN--NLT 547 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t 547 (805)
|....++|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+.-. .+. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 44456778889999999998887753 12 35788899999999999999999998765211 111 235
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCC----CH-
Q 039715 548 FVGVLSACS-NGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQP----SV- 613 (805)
Q Consensus 548 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p----~~- 613 (805)
+..+...|. ..|++++|.+.+++..+.+....+ ..++..++..|.+.|++++|.+.++++ +..+ ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 666666664 469999999999988653222222 356788899999999999999999865 1111 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHHh--cCChHHHhh
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT-----HVLLSNIYAM--ARSWEKAAS 668 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~a~~ 668 (805)
..+..++-.+...|+.+.|...++++.+++|..+.+ +..|...|.. .+++++|.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~ 261 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 234555566778899999999999999999864432 3445555554 456888877
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=2.3e-06 Score=84.54 Aligned_cols=203 Identities=10% Similarity=-0.038 Sum_probs=116.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK 491 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 491 (805)
|.-....|...|++++|++.|.+..+... ..++. .....++..+..+|.+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~---------------~~~~~---------------~~~a~~~~~~g~~y~~ 89 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQK---------------KAGNE---------------DEAGNTYVEAYKCFKS 89 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHH---------------HTTCH---------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHH---------------HcCCC---------------HHHHHHHHHHHHHHHH
Confidence 33457777788888888888777654210 00000 0012344455555666
Q ss_pred cCCHHHHHHHhhhcCCC---------CHhHHHHHHHHHH-hCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHH
Q 039715 492 CGSITDARLVFDMMNDW---------NEVSWNAMISGYS-MHGLSAEVLKVFDLMQQR----GWRPN-NLTFVGVLSACS 556 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~ 556 (805)
.|++++|.+.+++..+- ....+..+...|. ..|++++|++.|++..+. +-.+. ..++..+...+.
T Consensus 90 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~ 169 (290)
T d1qqea_ 90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Confidence 66666666655544310 1334555666664 358888888888776542 11111 234666777788
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC---C---HHHHHHHHHHHH
Q 039715 557 NGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP---S---VMIWRALLGACI 624 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~---~~~~~~l~~~~~ 624 (805)
..|++++|..+|+++.....-.+. ...+..++..+...|+++.|...+++. .+.| + ......++.++.
T Consensus 170 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~ 249 (290)
T d1qqea_ 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (290)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence 888888888888887754222221 123445555666778888888888866 2222 1 224455666655
Q ss_pred Hc--CCHHHHHHHHHHHhccCC
Q 039715 625 IH--NNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 625 ~~--g~~~~a~~~~~~~~~~~p 644 (805)
.. +.+++|+..|+++.+++|
T Consensus 250 ~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 250 EGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp TTCTTTHHHHHHHHTTSSCCCH
T ss_pred hcCHHHHHHHHHHHHHHhhcCH
Confidence 42 357888888887777766
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=3e-07 Score=77.07 Aligned_cols=107 Identities=19% Similarity=0.026 Sum_probs=85.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCH---HHHHHHHHcC-CCCCCH---HHHHHHHH
Q 039715 550 GVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHL---DKAAKLIEGI-PFQPSV---MIWRALLG 621 (805)
Q Consensus 550 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~---~eA~~~~~~~-~~~p~~---~~~~~l~~ 621 (805)
.+++.+...+++++|.+.|+..... .| ++.++..++.+|.+.++. ++|+++++++ ...|+. .+|..|+.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 4667777788889999999888843 45 567888888888775544 4688888875 334433 37888999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 039715 622 ACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659 (805)
Q Consensus 622 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 659 (805)
+|...|++++|+..++++++++|++..+...+..+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=5.6e-06 Score=75.80 Aligned_cols=109 Identities=9% Similarity=0.051 Sum_probs=78.6
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 632 (805)
+...|++++|++.|..+ .+|+...|..++.+|.+.|++++|++.|++. .+.| ++..|..++.++...|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 44566666666666542 2345566666667777777777777766654 2334 466888888888889999999
Q ss_pred HHHHHHHhccCCCCc----------------chHHHHHHHHHhcCChHHHhh
Q 039715 633 RLSAQHILDFEPEDE----------------ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 633 ~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+..++++++..|.+. ..+..++.+|...|++++|.+
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~ 141 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 141 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 998988887655442 456789999999999999988
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.40 E-value=2.9e-07 Score=85.61 Aligned_cols=93 Identities=9% Similarity=-0.024 Sum_probs=53.5
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSM 587 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 587 (805)
....-..+..|.+.|++++|+..|++.++. .| +...|..+..+|...|++++|+..|+.++ .+.| +...|..+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~l 78 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFL 78 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHHH
Confidence 334444555666666666666666666653 34 33345555556666666666666666655 3455 34556666
Q ss_pred HHHHHhcCCHHHHHHHHHcC
Q 039715 588 VSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~ 607 (805)
+.+|.+.|++++|+..|+++
T Consensus 79 g~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 66666666666666666543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.1e-06 Score=78.08 Aligned_cols=114 Identities=8% Similarity=0.069 Sum_probs=86.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 628 (805)
...|.+.|++++|...|+++.+. .| +...|..++.+|.+.|++++|.+.|+++ ...| +...|..++.++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34566778888888888777743 45 4667777888888888888888888765 3345 46789999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHH--HhcCChHHHhh
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLLSNIY--AMARSWEKAAS 668 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~ 668 (805)
+++|+..++++++++|+++..+..+..+. ...+.+++|..
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888877664 33444655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.7e-06 Score=77.56 Aligned_cols=135 Identities=10% Similarity=0.033 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSL 590 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 590 (805)
..+...+..+.+.|++++|+..|++.++. .|... +..+.-......+. ...|..+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~------------~~~~~~~~~~~~~~--------~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYES------------SFSNEEAQKAQALR--------LASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCC------------CCCSHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcc------------ccchHHHhhhchhH--------HHHHHHHHHH
Confidence 34556677788888888888888887763 22100 00001011111111 2357778889
Q ss_pred HHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 591 LGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
|.+.|++++|+..+++. ...| ++..|..++.+|...|++++|+..++++++++|+++.+...++.++...+...+..
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998865 3345 67889999999999999999999999999999999999999999988777666543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=7.4e-07 Score=79.18 Aligned_cols=83 Identities=8% Similarity=0.008 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSW 663 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 663 (805)
..+..|.+.|++++|+..|+++ ...| +...|..++..|...|++++|+..++++++++|++..+|..+|.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3467788999999999999976 3344 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
++|.+
T Consensus 95 ~eA~~ 99 (159)
T d1a17a_ 95 RAALR 99 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.30 E-value=7.1e-07 Score=73.77 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 585 TSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 585 ~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
-.++..+.+.|++++|+..|++. ...| ++..|..++.++...|++++|+..++++++++|+++.++..||.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788899999999998876 3345 578899999999999999999999999999999999999999999999999
Q ss_pred hHHHhh
Q 039715 663 WEKAAS 668 (805)
Q Consensus 663 ~~~a~~ 668 (805)
+++|.+
T Consensus 100 ~~~A~~ 105 (112)
T d1hxia_ 100 ANAALA 105 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999976
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=3.2e-06 Score=75.77 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..+|.+|...|++++|..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 117 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 117 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHH
Confidence 4577788889999999999999999999999999999999999999999999988
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.11 E-value=3.8e-06 Score=73.74 Aligned_cols=101 Identities=7% Similarity=-0.086 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC---IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~ 623 (805)
.+..-...+.+.|++.+|+..|+.+.......+. ........ .....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK---------------------NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhh---------------------hHHHHHHhhHHHHH
Confidence 3444555667777888887777776643221111 00000000 00123456666667
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+.|++++|+..++++++++|++..+|..+|.+|...|++++|..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~ 122 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 122 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHH
Confidence 777777777777777777777777777777777777777777766
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.10 E-value=1e-05 Score=72.33 Aligned_cols=135 Identities=7% Similarity=0.030 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSL 590 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 590 (805)
.+......+...|++++|++.|+++++. .+ .........+.. .+.| ....|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~----------~~~~~~~~~~~~----------~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VE----------GSRAAAEDADGA----------KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH----------HHHHHSCHHHHG----------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--hh----------hhhhhhhhHHHH----------HhChhhHHHHHHHHHH
Confidence 3455666778888898898888887651 11 000001111110 1223 34577888999
Q ss_pred HHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 591 LGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|.+.|++++|+..++++ .+.| ++..|..++.++...|++++|+..++++++++|+++.++..|..++.......++.+
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k 166 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 166 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999866 4455 567899999999999999999999999999999999999999999887776666543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.06 E-value=2.4e-05 Score=69.63 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 659 (805)
..|..+..+|.+.|++++|+..+++. ... .+...|..++.++...|++++|+..++++++++|+++.+...++.+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677888899999999999998865 223 4677899999999999999999999999999999999999999998877
Q ss_pred cCChHHHhh
Q 039715 660 ARSWEKAAS 668 (805)
Q Consensus 660 ~g~~~~a~~ 668 (805)
.++..+..+
T Consensus 145 ~~~~~e~~k 153 (168)
T d1kt1a1 145 AKEHNERDR 153 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHhHHHHHH
Confidence 776665433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=3e-07 Score=98.74 Aligned_cols=132 Identities=8% Similarity=-0.092 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 039715 524 GLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAK 602 (805)
Q Consensus 524 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 602 (805)
+.++.|+..+++..+ +.|+ ...+..+...+...|+.++|...++..... .| ...+..|++++...|++++|..
T Consensus 100 ~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 100 GFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHTC---------------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHH
Confidence 344444444443333 3333 234455555556666666666655544321 11 2345566666666666666666
Q ss_pred HHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 603 LIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 603 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
.+++. ...|+ ...|+.|+..+...|+..+|+..|.+++.++|+.+.++..|+.++.+..
T Consensus 174 ~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 174 YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 66654 23343 3466666666666666666666666666666666666666666665544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.01 E-value=4.8e-05 Score=66.37 Aligned_cols=130 Identities=8% Similarity=-0.095 Sum_probs=97.8
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
...+...+..+.+.|++.+|+..|++.+.. -|... ...-......... ....+|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHH
Confidence 456778888999999999999999999873 22110 0000000010011 12346788899
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 590 LLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 590 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
.|.+.|++++|++.++++ ...| ++..|..++.++...|++++|+..++++++++|+++.+...+..+..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999865 3445 6789999999999999999999999999999999999988888776543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.97 E-value=0.0018 Score=61.97 Aligned_cols=223 Identities=8% Similarity=-0.111 Sum_probs=96.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhc----cCCchhHHHHHHHHHHcCCCCcHhHHHH
Q 039715 409 HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACAS----LAALEPGMQVHCLTVKANYDMDVVVANA 484 (805)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 484 (805)
+..|..+...+.+.+++++|++.|++..+.| +...+..|...+.. ..+...+...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3445555555555666666666666665543 22233333333332 234444444444444443 2222233
Q ss_pred HHHHHHh----cCCHHHHHHHhhhcCCC-CHhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 485 LIDMYAK----CGSITDARLVFDMMNDW-NEVSWNAMISGYSM----HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 485 li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
|...+.. ..+.+.|...++...+. .......+...+.. ......|...+.+.... .+...+..+...+
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLY 152 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhh
Confidence 3333322 23444444444443321 22222222222221 23344444444444442 2333444444443
Q ss_pred Hc----CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH--
Q 039715 556 SN----GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGR----AGHLDKAAKLIEGIPFQPSVMIWRALLGACII-- 625 (805)
Q Consensus 556 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~-- 625 (805)
.. ..+...+..+++...+. .+......|..+|.. ..++++|..+|++....-++..+..|+..|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 228 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred ccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCC
Confidence 32 33444555554444322 233344444444443 34556666666544222344445555554442
Q ss_pred --cCCHHHHHHHHHHHhccCC
Q 039715 626 --HNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 626 --~g~~~~a~~~~~~~~~~~p 644 (805)
..+.++|.+.++++.+..+
T Consensus 229 g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 229 GVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CCccCHHHHHHHHHHHHHCcC
Confidence 2255566666666655544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=6.9e-06 Score=73.49 Aligned_cols=57 Identities=7% Similarity=0.045 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 612 SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 612 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...|..+..++.+.|++++|+..++++++++|+++.+|..+|.+|...|++++|.+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~ 132 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALA 132 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHH
Confidence 345788899999999999999999999999999999999999999999999999988
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.88 E-value=1.9e-05 Score=70.37 Aligned_cols=81 Identities=10% Similarity=0.015 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeCCCCCc
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAGDTSHA 693 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~ 693 (805)
.++..+..+|...|++++|+..++++++++|++..+|..+|.+|...|++++|.+ .|..+...+|
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~---------------~~~~al~l~P 129 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG---------------DFEKVLEVNP 129 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH---------------HHHHHHHSCT
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHH---------------HHHHHHHhCC
Confidence 4567788889999999999999999999999999999999999999999999988 1111123345
Q ss_pred cHHHHHHHHHHHHHHH
Q 039715 694 DMNIIRGMLEWLNMKS 709 (805)
Q Consensus 694 ~~~~i~~~l~~l~~~~ 709 (805)
...++...+..+...+
T Consensus 130 ~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 130 QNKAARLQIFMCQKKA 145 (168)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5566666665554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=1.4e-05 Score=67.48 Aligned_cols=85 Identities=11% Similarity=0.114 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc-------hHHHHH
Q 039715 584 YTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA-------THVLLS 654 (805)
Q Consensus 584 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 654 (805)
+..++..|.+.|++++|++.|++. ...| +..+|..+..+|...|++++|+..++++++++|+++. +|..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445778888889999999988765 2334 5788999999999999999999999999999998876 455677
Q ss_pred HHHHhcCChHHHhh
Q 039715 655 NIYAMARSWEKAAS 668 (805)
Q Consensus 655 ~~~~~~g~~~~a~~ 668 (805)
.++...|++++|.+
T Consensus 87 ~~~~~~~~~~~A~~ 100 (128)
T d1elra_ 87 NSYFKEEKYKDAIH 100 (128)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHhCCHHHHHH
Confidence 78888889999877
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.86 E-value=0.0023 Score=61.15 Aligned_cols=213 Identities=9% Similarity=-0.049 Sum_probs=152.9
Q ss_pred hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHhhhcCCC-CHhHHHHHHH
Q 039715 444 EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK----CGSITDARLVFDMMNDW-NEVSWNAMIS 518 (805)
Q Consensus 444 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~ 518 (805)
+..+..|...+.+.+++++|.+.|....+.| +......|..+|.. ..+...|...+.....+ +...+..+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccc
Confidence 3455566667778899999999999999887 56677778888876 66899999998887644 6667777766
Q ss_pred HHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 039715 519 GYSM----HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS----NGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSL 590 (805)
Q Consensus 519 ~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 590 (805)
.+.. .++.+.|...+++..+.|.. .....+...+. .......+...+..... ..+...+..|...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSL 151 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhh
Confidence 6654 56788999999999886632 22222222222 34567777777766553 2466777788888
Q ss_pred HHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh---
Q 039715 591 LGR----AGHLDKAAKLIEGIPFQPSVMIWRALLGACII----HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM--- 659 (805)
Q Consensus 591 ~~~----~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 659 (805)
|.. ..+...+..+++...-..+...+..|...|.. ..+.++|+..++++.+.. ++.++..||.+|..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g 229 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEG 229 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSS
T ss_pred hccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCC
Confidence 775 45777888888766434577777777777765 568999999999998874 67888999999985
Q ss_pred -cCChHHHhh
Q 039715 660 -ARSWEKAAS 668 (805)
Q Consensus 660 -~g~~~~a~~ 668 (805)
..+.++|.+
T Consensus 230 ~~~n~~~A~~ 239 (265)
T d1ouva_ 230 VTRNEKQAIE 239 (265)
T ss_dssp SSCCSTTHHH
T ss_pred CccCHHHHHH
Confidence 224555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.86 E-value=3.8e-06 Score=72.86 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=72.0
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcC----------CCHHHHHHHHHHHHHhcCCCC-ChHHHHHH
Q 039715 520 YSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNG----------GLLEQGEAYFKSMVANYGIEP-CIEHYTSM 587 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 587 (805)
|-+.+.+++|+..|++..+ +.|+.. .+..+..++... +.+++|+..|+++.+ +.| +...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhH
Confidence 4455667777777777777 455433 555555555432 223445555544442 233 23344444
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 588 VSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
+.+|...|++. ++... ..+++++|...|+++++++|++..++..|+......+.+.++.
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333210 11100 1124688999999999999999999999998877777777765
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
+
T Consensus 141 k 141 (145)
T d1zu2a1 141 K 141 (145)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.84 E-value=2.9e-05 Score=63.61 Aligned_cols=85 Identities=9% Similarity=-0.027 Sum_probs=45.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHh
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGR 593 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 593 (805)
+...+.+.|++++|+..|++.++ ..|+ ...|..+..++.+.|++++|+..|+...+ +.| +...+..++..|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHH
Confidence 44455556666666666666655 2343 33555555555666666666666665553 233 24445555555555
Q ss_pred cCCHHHHHHHHH
Q 039715 594 AGHLDKAAKLIE 605 (805)
Q Consensus 594 ~g~~~eA~~~~~ 605 (805)
.|++++|.+.++
T Consensus 97 ~g~~~~A~~~l~ 108 (112)
T d1hxia_ 97 EHNANAALASLR 108 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 555555555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=8.1e-05 Score=61.71 Aligned_cols=97 Identities=11% Similarity=-0.065 Sum_probs=61.3
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH---HHHHHHhhhcCCCC-----HhHHHHHHHHH
Q 039715 449 SVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSI---TDARLVFDMMNDWN-----EVSWNAMISGY 520 (805)
Q Consensus 449 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~-----~~~~~~li~~~ 520 (805)
.+++.+...+++++|++.|...++.+ +.++.++..+..++.+.++. ++|+.+|+++...+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45555556666666666666666655 44566666666666654443 35777777765432 22566677777
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRPNNLTF 548 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 548 (805)
.+.|++++|++.|+++++ +.|+....
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~~A 108 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNNQA 108 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCCHHH
Confidence 777777777777777777 56665433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=3.9e-05 Score=60.59 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC----C----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI----P----FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
.+-.++..+.+.|++++|...|++. + ..++ ..++..|+.++.+.|++++|+..++++++++|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3345666666777777777666543 1 1233 46789999999999999999999999999999999999888
Q ss_pred HHHHH
Q 039715 654 SNIYA 658 (805)
Q Consensus 654 ~~~~~ 658 (805)
+.+..
T Consensus 87 ~~~~~ 91 (95)
T d1tjca_ 87 KYFEY 91 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=0.019 Score=55.98 Aligned_cols=280 Identities=13% Similarity=0.029 Sum_probs=153.0
Q ss_pred CCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHH
Q 039715 239 KPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARY 318 (805)
Q Consensus 239 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 318 (805)
.||..--..+..-|.+.|.++.|..++..+. -+..++..|.+.++++.|..++.+. .+..+|..+...+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 3555555666777778888888888886532 2446677788888888888887765 3556788888888
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHH
Q 039715 319 AQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSV 398 (805)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 398 (805)
.+.....-| .+.......+......++..+...|.+++...+++...... ..+..+++-|+..|++.+. ++-.
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~ 152 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMR 152 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHH
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHH
Confidence 877665443 22233344566667788888888888888888888776432 5567778888888888753 4444
Q ss_pred HHHhcCCCC-C----------hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHH
Q 039715 399 ELFAESPKR-N----------HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVH 467 (805)
Q Consensus 399 ~~f~~~~~~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 467 (805)
+.+...... | ...|.-++-.|.+.|++++|+.+.-+ ..++.......+..+.+..+.+...+..
T Consensus 153 e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i 227 (336)
T d1b89a_ 153 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAI 227 (336)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHH
Confidence 444432211 1 12355555566666666665544322 1334444444555566666666655555
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 039715 468 CLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT 547 (805)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 547 (805)
...++.. +...+.|+......-+..+..+.|+ +.++..-....++..++.| +...
T Consensus 228 ~~yL~~~----p~~i~~lL~~v~~~~d~~r~V~~~~------------------k~~~l~li~p~Le~v~~~n---~~~v 282 (336)
T d1b89a_ 228 QFYLEFK----PLLLNDLLMVLSPRLDHTRAVNYFS------------------KVKQLPLVKPYLRSVQNHN---NKSV 282 (336)
T ss_dssp HHHHHHC----GGGHHHHHHHHGGGCCHHHHHHHHH------------------HTTCTTTTHHHHHHHHTTC---CHHH
T ss_pred HHHHHcC----HHHHHHHHHHhccCCCHHHHHHHHH------------------hcCCcHHHHHHHHHHHHcC---hHHH
Confidence 5544431 2223444444444444444444443 3444444445555444433 3345
Q ss_pred HHHHHHHHHcCCCHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEA 566 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~ 566 (805)
...+...|...++++.-++
T Consensus 283 n~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 283 NESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHH
Confidence 5666666666666544333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=6.7e-06 Score=87.90 Aligned_cols=166 Identities=11% Similarity=0.001 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhhcCCCCChhhHHHHHHHH--hccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHh
Q 039715 425 VGKAMIMFSKMLEEQVPATEVTYSSVLRAC--ASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVF 502 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 502 (805)
+..+++.+++..+....++.......+..+ ...+.++.+.+.+....+.. +++...+..+...+.+.|+.++|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 345566666655544334433222222221 11222333333332222221 234556777888888889999888887
Q ss_pred hhcCCCC-HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC
Q 039715 503 DMMNDWN-EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN-LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC 580 (805)
Q Consensus 503 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 580 (805)
......+ ..++..++..+...|++++|+..|++..+ +.|+. .+|+.+...+...|+..+|...|.+.... -.|-
T Consensus 144 ~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~ 219 (497)
T d1ya0a1 144 SSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPF 219 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC
Confidence 7665443 24677788889999999999999999998 56754 58999999999999999999999888732 2456
Q ss_pred hHHHHHHHHHHHhcC
Q 039715 581 IEHYTSMVSLLGRAG 595 (805)
Q Consensus 581 ~~~~~~li~~~~~~g 595 (805)
...+..|..+|.+..
T Consensus 220 ~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 220 PAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 778888888876544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00061 Score=56.90 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
+-.++..|.+.|++++|+..|++.++. .| +...+..+..+|.+.|++++|+..++.+++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 445566667777777777777777763 34 344666666667777777777777776653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.47 E-value=0.056 Score=52.51 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=53.2
Q ss_pred ChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 039715 342 NQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQ 421 (805)
Q Consensus 342 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 421 (805)
|..-...+..-|.+.|.++.|..+|..+. -+..++..|.+.++++.|.+.+.+. .+..+|.-+...+.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHh
Confidence 33333344444445555555555544321 1334444555555555555554432 233455555555554
Q ss_pred cCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 039715 422 LGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG 493 (805)
Q Consensus 422 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 493 (805)
.....-| .+.......+......++..+...|..++...+++...... ..+..+++-++.+|++.+
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 4433222 11122222333333445555555555555555555443221 334445555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.40 E-value=0.00019 Score=62.74 Aligned_cols=56 Identities=11% Similarity=-0.085 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED-----------EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|+.+..+|...|++++|+..+++++++.|+. ..+|..+|.+|...|++++|.+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~ 121 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 121 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHH
Confidence 3578888899999999999999999988764421 2357889999999999999987
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.36 E-value=0.0006 Score=59.32 Aligned_cols=33 Identities=6% Similarity=-0.194 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
.+..++.+|...|++++|+..+++++++.|+..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 577788999999999999999999999877543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.29 E-value=0.0021 Score=57.00 Aligned_cols=121 Identities=9% Similarity=0.064 Sum_probs=81.4
Q ss_pred HHHHHhccCCchhHHHHHHHHHHc--CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChH
Q 039715 450 VLRACASLAALEPGMQVHCLTVKA--NYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSA 527 (805)
Q Consensus 450 ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 527 (805)
........|++++|.+.+...+.. |..... ....+-+...-..+.......|..++..+...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~------------~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD------------LRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG------------GTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 334566777777777777777663 211000 000000111111111224557888899999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hcCCCCChHHH
Q 039715 528 EVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA----NYGIEPCIEHY 584 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 584 (805)
+|+..++++++ +.| +...+..++.++...|+..+|++.|+.+.. ..|+.|...+-
T Consensus 85 ~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 85 AVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 99999999998 466 566899999999999999999999998744 46899987653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.28 E-value=0.00029 Score=67.21 Aligned_cols=125 Identities=10% Similarity=0.012 Sum_probs=90.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLD 598 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 598 (805)
.+.|++++|+..+++.++ ..|+ ...+..+...++..|++++|...|+...+ +.|+ ...+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 456899999999999988 4664 45788888889999999999999998874 4564 455556666666666655
Q ss_pred HHHHHHHcC--CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 039715 599 KAAKLIEGI--PFQPSV-MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 599 eA~~~~~~~--~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
++..-.... ...|+. ..+...+..+...|+.++|...++++.++.|+.+..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 554433321 223432 3444555668889999999999999999999877653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.27 E-value=3.6e-05 Score=66.45 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=48.1
Q ss_pred hcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHH----------cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 593 RAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACII----------HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 593 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
|.+.+++|++.|++. ...| ++.+|..++.+|.. .+.+++|+..++++++++|+++.+|..+|.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 344455555555433 1222 33444444444432 34568899999999999999999999999999988
Q ss_pred CCh
Q 039715 661 RSW 663 (805)
Q Consensus 661 g~~ 663 (805)
|++
T Consensus 89 g~~ 91 (145)
T d1zu2a1 89 AFL 91 (145)
T ss_dssp HHH
T ss_pred ccc
Confidence 753
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.18 E-value=0.00077 Score=59.98 Aligned_cols=107 Identities=13% Similarity=0.019 Sum_probs=75.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCH
Q 039715 550 GVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNV 629 (805)
Q Consensus 550 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 629 (805)
.........|++++|.+.|.....-+ +.... . -+...........-++. .....|..++.++...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l----~-~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW---RGPVL----D-DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---CSSTT----G-GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC---ccccc----c-cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 33456778899999999999888433 32110 0 00000011111111111 1235688899999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 630 EIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 630 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++|+..++++++++|.+...|..|+.+|...|++++|.+
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~ 122 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALG 122 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999999999999999976
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00041 Score=54.37 Aligned_cols=55 Identities=15% Similarity=-0.105 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcCChHHHhh
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPED-------EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+-.++..+...|++++|+..+++++++.|++ ..++..||.+|.+.|++++|.+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~ 67 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHH
Confidence 345578888999999999999999999976644 3568899999999999999988
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.89 E-value=0.0046 Score=58.55 Aligned_cols=113 Identities=9% Similarity=-0.082 Sum_probs=60.9
Q ss_pred hcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHH
Q 039715 491 KCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEA 566 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~ 566 (805)
+.|++++|+..+++..+ .|...+..++..|+..|++++|++.|++..+ +.|+.. .+..+..++...+..+++..
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 45666666666666542 2566677777777777777777777777766 456543 33333333333333343332
Q ss_pred HHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 567 YFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 567 ~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
...... . -..| +...+......+.+.|+.++|.++++++
T Consensus 86 ~~~~~~-~-~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a 125 (264)
T d1zbpa1 86 GAATAK-V-LGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125 (264)
T ss_dssp SCCCEE-C-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhhhhh-c-ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 221111 0 1112 2233344456667777888777777654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.26 E-value=3.1 Score=41.69 Aligned_cols=346 Identities=10% Similarity=-0.004 Sum_probs=160.1
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhHHHHHHHHHhccCCc
Q 039715 281 VALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAF-VAPNQFTFVSVLQACATMEGL 359 (805)
Q Consensus 281 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~ 359 (805)
...+..+.+.++.+.....+..-+ .+...-.....+....|+.++|...+..+-..| ..|+
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~----------------- 137 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN----------------- 137 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT-----------------
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-----------------
Confidence 344566778888888777665432 233334467778888999999998888776554 2232
Q ss_pred hHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 039715 360 DLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQ 439 (805)
Q Consensus 360 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 439 (805)
....++..+.+.|. .+...+-.-+......|+...|..+...++..........+....+ ...+......
T Consensus 138 -~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~----- 207 (450)
T d1qsaa1 138 -ACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART----- 207 (450)
T ss_dssp -HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----
T ss_pred -HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc-----
Confidence 22333444444442 2222333344455566777777777777665444444444443322 1112111111
Q ss_pred CCCChhhHHHHHHHHhc--cCCchhHHHHHHHHHHcCCCCcHhH---HHHHHHHHHhcCCHHHHHHHhhhcC--CCCHhH
Q 039715 440 VPATEVTYSSVLRACAS--LAALEPGMQVHCLTVKANYDMDVVV---ANALIDMYAKCGSITDARLVFDMMN--DWNEVS 512 (805)
Q Consensus 440 ~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~ 512 (805)
..++......+..+..+ ..+.+.+...+.............. ...+...+...+..+.|...+.... ..+...
T Consensus 208 ~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 287 (450)
T d1qsaa1 208 TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL 287 (450)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH
T ss_pred CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHH
Confidence 11222222222222222 1344455555544443321111111 1111122223344455555444332 112222
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMV-SLL 591 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~ 591 (805)
..-.+......+++..+...|+.|... ......-.--+..+....|+.++|..+|..+.. .++ -|.-|. +.+
T Consensus 288 ~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~~L 360 (450)
T d1qsaa1 288 IERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQRI 360 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHHHc
Confidence 222233334456666666666655321 111222333445566667777777777766542 122 333332 111
Q ss_pred HhcCCHHHHHHHHHcCCCCCCH-HHH---HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 592 GRAGHLDKAAKLIEGIPFQPSV-MIW---RALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~~~~p~~-~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
+..-.+. ....+..++. ..- ..-+..+...|...+|...+..+.+-. ++.-...++.+..+.|.++.|+
T Consensus 361 g~~~~~~-----~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI 433 (450)
T d1qsaa1 361 GEEYELK-----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSV 433 (450)
T ss_dssp TCCCCCC-----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCCCC-----cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHH
Confidence 1110000 0001111111 110 111233556677777777766665432 3445566677777777777766
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
.
T Consensus 434 ~ 434 (450)
T d1qsaa1 434 Q 434 (450)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.55 E-value=0.37 Score=39.29 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcC
Q 039715 424 EVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKAN 474 (805)
Q Consensus 424 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 474 (805)
++++|+++|++..+.|.. .....+. .....+.+++.+.+....+.|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 466777777776665521 1122221 122334455555555555544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.30 E-value=0.34 Score=38.44 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHcCC-CCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 579 PCIEHYTSMVSLLGRAG---HLDKAAKLIEGIP-FQP-SV-MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 579 p~~~~~~~li~~~~~~g---~~~eA~~~~~~~~-~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
|++.+--....++.+.. ++++|+.+++++- ..| +. ..|-.|.-+|.+.|++++|++.++++++++|++..+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 34444444555555443 3456666666541 123 33 467788888999999999999999999999999877655
Q ss_pred HHHH
Q 039715 653 LSNI 656 (805)
Q Consensus 653 l~~~ 656 (805)
..-+
T Consensus 113 ~~~I 116 (124)
T d2pqrb1 113 KSMV 116 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.03 E-value=5 Score=40.09 Aligned_cols=245 Identities=6% Similarity=0.026 Sum_probs=126.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCC-CCChhhHHHHHHHHhccCCch
Q 039715 383 ALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQV-PATEVTYSSVLRACASLAALE 461 (805)
Q Consensus 383 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~ 461 (805)
..+..+.+.++++.....|...+ .+...-.....+..+.|+.++|...+..+-..|. .|+ ....+...+...|.+.
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~~~lt 153 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGKQD 153 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--HHHHHHHHHHhcCCCC
Confidence 33455667777777666554432 2444445566777778888888888777766542 222 2222333222222222
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---------------------------CCHhHHH
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---------------------------WNEVSWN 514 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------------------------~~~~~~~ 514 (805)
...+-.-++.....|+...|..+...+.. .+.....
T Consensus 154 -----------------~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~ 216 (450)
T d1qsaa1 154 -----------------PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQ 216 (450)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHH
T ss_pred -----------------HHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhH
Confidence 11111222223333344444333333321 1222222
Q ss_pred HHHHHHHh--CCChHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 039715 515 AMISGYSM--HGLSAEVLKVFDLMQQRGWRPNNLTFVGVL----SACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMV 588 (805)
Q Consensus 515 ~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll----~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 588 (805)
.+..++.+ ..+.+.|..++........ .+......+. ......+..+.+..++...... ..+.....-++
T Consensus 217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~ 292 (450)
T d1qsaa1 217 MAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRV 292 (450)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHH
Confidence 22223222 2467777777777665432 2222222211 2223455667777776665532 23444444455
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCH-HHH-HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 589 SLLGRAGHLDKAAKLIEGIPFQPSV-MIW-RALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~~~~p~~-~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
....+.++...+...++.|+..|.. .-| -=++.++...|+.++|...+..+-. .+ ..|-.|+.
T Consensus 293 ~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~---~fYG~LAa 357 (450)
T d1qsaa1 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR---GFYPMVAA 357 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC---SHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC---ChHHHHHH
Confidence 5556778888888888888644322 122 2234567788899888888888764 23 36666653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.16 E-value=0.81 Score=37.05 Aligned_cols=111 Identities=6% Similarity=-0.135 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh----cCCHHHH
Q 039715 525 LSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGR----AGHLDKA 600 (805)
Q Consensus 525 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA 600 (805)
++++|+++|++..+.| .|. ....+. .....+.++|..++++..+. | ++.....|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g-~~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EMF--GCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC-Chh--hhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 5667777777777765 222 222222 23345677777777776643 2 34455556666553 3467788
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 039715 601 AKLIEGIPFQPSVMIWRALLGACII----HNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 601 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 644 (805)
.++|++....-++.....|...|.. ..|.++|.+.++++.++..
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888766323445555556555544 3578888888888877654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.84 E-value=3.6 Score=32.14 Aligned_cols=139 Identities=11% Similarity=0.051 Sum_probs=75.5
Q ss_pred HHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 039715 420 VQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDAR 499 (805)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 499 (805)
.-.|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+. .| ..+|+++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHH
Confidence 3456667777777666543 22334444443333333333333333222211 11 12344444444
Q ss_pred HHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Q 039715 500 LVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI 577 (805)
Q Consensus 500 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 577 (805)
..+-.+-. +....+.-+..+.++|+-++-.++++.+.+. -+|++.....+..||.+.|...++.+++.++-++ |+
T Consensus 77 ~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 77 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 44433322 2233444556677778877777777776664 3677777777888888888888888887777654 44
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.72 E-value=0.96 Score=35.77 Aligned_cols=59 Identities=8% Similarity=-0.053 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCCc-chHHHHHHHHHhcCChHHHhh
Q 039715 610 QPSVMIWRALLGACIIHN---NVEIGRLSAQHILDFEPEDE-ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+.+-+.-.+.+++.+.. +.++|+.+++.+++.+|.+. ..+..|+-.|.+.|++++|.+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~ 94 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 94 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 355667777777777654 56799999999999999764 688999999999999999998
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=86.84 E-value=5.7 Score=30.94 Aligned_cols=126 Identities=9% Similarity=-0.013 Sum_probs=55.6
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAA 601 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 601 (805)
-.|..++..++..+.... .+..-|+.++--....-+-+-..+.++.+-+-+.+.| ++++....
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~vv 76 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSVV 76 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHHHH
Confidence 345666666666665542 2333344444333333444444444444433332222 23333333
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 039715 602 KLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 602 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 666 (805)
..+-.+. .+....+--+....++|+-++-.+.++.+++-+.-+|+...-++++|.+.|.-.++
T Consensus 77 ~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~ 139 (161)
T d1wy6a1 77 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDA 139 (161)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhH
Confidence 3222221 12222333344455555555555555555554444555555555555555555444
|