Citrus Sinensis ID: 039719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MAKPRILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNSSNEDIKATKSQM
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEEcccEEEEEEEccccccccEEEEEEcccEEEEEEEEEEEEEccEEEEEEEcccccccccEEEEEcccEEEEEcccccccccccccEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEEEccccccccEEEEEEcccEEEEEcccEEEEccccEEEEEEccccccHHHEEEEEcccEEEEEEccccccccccccEEEEEEcccccccccccccHHcc
Coil and Loop (DISEMBL)
MAKPRILAMTMLFLVMAATLTNMAsqanaltpytqspffdmmfpmTEESFRVLeqtpltiakgaDHHQTLALARadwmetptihvitldipvmkkdnvkieveenrvlrvsgerktewTFGKFWRQFRMHMSTDLDHIKahtengilrvtvpklaeekkrqpevinideescnssnedikatksqm
Flexible Loop (DISEMBL)
MAKPRILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVItldipvmkkdnvkieveenrvlrvsgerktewtfgkfWRQFRMHMSTDLDHIKAHTENGilrvtvpklaeekkrqpevinideescnssnedikatksqm
Low Complexity Region (SEG)
MAKPRILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNSSNEDIKATKSQM
Disordered region (IsUnstruct)
*****ILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP**********************************
Disordered Region (DISOPRED)
*********TMLFLVMAA*************PYTQSPFFDMMFPMTEESFRVLEQTPL********HQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV***********************************
Disordered Region (DISEMBL)
MAKPRILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCN*************
Disordered Region (DISPRO)
**KPRILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEE****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKPRILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNSSNEDIKATKSQM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
P19244	197	22.7 kDa class IV heat sh	N/A	no	0.795	0.751	0.445	3e-31
Q38806	195	22.0 kDa heat shock prote	yes	no	0.844	0.805	0.417	8e-29
P30236	192	22.0 kDa class IV heat sh	no	no	0.876	0.848	0.379	9e-28
Q7XUW5	215	23.2 kDa heat shock prote	yes	no	0.688	0.595	0.363	2e-23
Q53M11	206	21.9 kDa heat shock prote	no	no	0.806	0.728	0.364	4e-23
P27880	158	18.2 kDa class I heat sho	N/A	no	0.537	0.632	0.434	6e-19
P27879	143	18.1 kDa class I heat sho	N/A	no	0.639	0.832	0.381	2e-18
P13853	157	17.6 kDa class I heat sho	no	no	0.5	0.592	0.444	4e-18
P05478	161	18.5 kDa class I heat sho	no	no	0.720	0.832	0.337	1e-17
Q84J50	159	17.7 kDa class I heat sho	no	no	0.516	0.603	0.423	1e-17

>sp|P19244|HSP41_PEA 22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 107/173 (61%), Gaps = 25/173 (14%)

Query: 29  ALTPYTQSP---FFDMMFPMTEESFRVLEQTPLTIAKGADHHQ---TLALARADWMETPT 82
           +L P+  SP     D+      + FRVLEQ P     G + H+   TL+ AR DW ETP 
Sbjct: 29  SLLPFIDSPNTLLSDLWSDRFPDPFRVLEQIPY----GVEKHEPSITLSHARVDWKETPE 84

Query: 83  IHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W-----TFGKFWRQFRMH 130
            HVI +D+P +KKD++KIEVEENRVLRVSGERK E       W     ++GKFWRQF++ 
Sbjct: 85  GHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLP 144

Query: 131 MSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNSS---NEDIK 180
            + DLD +KA  ENG+L +T+ KL+ +K + P +++I EE    S   N+++K
Sbjct: 145 QNVDLDSVKAKMENGVLTLTLHKLSHDKIKGPRMVSIVEEDDKPSKIVNDELK 197

Pisum sativum (taxid: 3888)

>sp|Q38806|HSP22_ARATH 22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1

 Score =  126 bits (317), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 101/175 (57%), Gaps = 18/175 (10%)

Query: 12  LFLVMAATLTNM----ASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHH 67
           +F + A  L N+     S ++AL     S   D+      + F++LE+ PL + +  D  
Sbjct: 8   IFFIGALLLGNIKTSEGSLSSALETTPGSLLSDLWLDRFPDPFKILERIPLGLER--DTS 65

Query: 68  QTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W-- 118
             L+ AR DW ET   H I LDIP +KKD VKIEVEEN VLRVSGERK E       W  
Sbjct: 66  VALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHR 125

Query: 119 ---TFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEE 170
              ++GKFWRQF++  + D++ +KA  ENG+L + + KL+ EK + P V+NI  E
Sbjct: 126 VERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIAAE 180

Arabidopsis thaliana (taxid: 3702)

>sp|P30236|HSP41_SOYBN 22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1

 Score =  122 bits (307), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 99/179 (55%), Gaps = 16/179 (8%)

Query: 23  MASQANALTPYTQSP---FFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWME 79
           +A    +L P+   P     D+      + FRVLE  P  + K  +    ++ AR DW E
Sbjct: 15  VAKANGSLLPFMDPPITLLADLWSDRFPDPFRVLEHIPFGVDK-DEASMAMSPARVDWKE 73

Query: 80  TPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGE------------RKTEWTFGKFWRQF 127
           TP  HVI LD+P +K++ +K+EVEENRVLRVSGE             + E ++GKFWRQF
Sbjct: 74  TPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQF 133

Query: 128 RMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNSSNEDIKATKSQM 186
           R+  + DLD +KA  ENG+L +T+ KL+  K + P V++I  E     N +    K ++
Sbjct: 134 RLPQNVDLDSVKAKLENGVLTLTLDKLSPGKIKGPRVVSIAGEDHQQGNLNNDGAKQEL 192

Glycine max (taxid: 3847)

>sp|Q7XUW5|HS232_ORYSJ 23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 18/146 (12%)

Query: 48  ESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRV 107
           + FR+LE  P    +  D    L++AR DW ET   H + +D+P M+K+++++EVE+NRV
Sbjct: 53  DPFRILEHVPFGFDR--DDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRV 110

Query: 108 LRVSGERKTE-----------W-----TFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV 151
           LR+SGER+ E           W     ++G+FWRQ R+  + DLD I A  +NG+L V  
Sbjct: 111 LRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTVRF 170

Query: 152 PKLAEEKKRQPEVINIDEESCNSSNE 177
            KLA ++ + P V+ I     +   +
Sbjct: 171 RKLAPDQIKGPRVVGIASAGGDDGGK 196

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53M11|HS219_ORYSJ 21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 97/184 (52%), Gaps = 34/184 (18%)

Query: 30  LTPYTQSPFFDMMFPMTEESFRVLEQTPL------TIAKGADHHQTLALARADWMETPTI 83
           L PY      D       + FRVLEQ+PL        A  A     +ALAR DW ETP  
Sbjct: 30  LVPYGYGYMLD-------DPFRVLEQSPLRPAGGVAAAAAAGEPAAVALARCDWKETPEA 82

Query: 84  HVITLDIPVMKKDNVKIEVEE-NRVLRVS-----------------GER--KTEWTFGKF 123
           HV+T+D+P +++ +V++EV+E +RVLRVS                 G R  + E   G+F
Sbjct: 83  HVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRF 142

Query: 124 WRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNS-SNEDIKAT 182
           WR+FRM    D+  + A  ++G+L VTVPK+   + R+P V+ ID         E +KA+
Sbjct: 143 WRRFRMPPGADVGRVAARLDDGVLTVTVPKVPGHRGREPRVVAIDGAGAGDMEAEVVKAS 202

Query: 183 KSQM 186
           K++M
Sbjct: 203 KAEM 206

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P27880|HSP12_MEDSA 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 15/115 (13%)

Query: 66  HHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W 118
            +      R DW ETP  HV   D+P MKK+ VK+E+E++RVL++SGER  E       W
Sbjct: 44  ENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQW 103

Query: 119 -----TFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINID 168
                + GKF R+FR+  +  +D +KA  ENG+L VTVPK   E+ ++PEV  ID
Sbjct: 104 HRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK---EEVKKPEVKTID 155

Medicago sativa (taxid: 3879)

>sp|P27879|HSP11_MEDSA 18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 80/144 (55%), Gaps = 25/144 (17%)

Query: 37  PFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKD 96
           PF D  FP T         + L+ +     +      R DW ETP  HV   D+P +KK+
Sbjct: 10  PFKD--FPFT--------NSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKE 59

Query: 97  NVKIEVEENRVLRVSGERKTE-------W-----TFGKFWRQFRMHMSTDLDHIKAHTEN 144
            VK+E+E++RVL++SGER  E       W     + GKF R+FR+  +  +D +KA  EN
Sbjct: 60  EVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMEN 119

Query: 145 GILRVTVPKLAEEKKRQPEVINID 168
           G+L VTVPK   E+ ++PEV +I+
Sbjct: 120 GVLTVTVPK---EEIKKPEVKSIE 140

Medicago sativa (taxid: 3879)

>sp|P13853|HS17C_ARATH 17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2

 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 68/108 (62%), Gaps = 15/108 (13%)

Query: 73  ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W-----TF 120
           A+ DW ETP  HV   D+P ++K+ VK+EVE+  +L++SGER  E       W     + 
Sbjct: 50  AKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSS 109

Query: 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINID 168
           GKF R+FR+  +  ++ IKA  ENG+L VTVPK+ E+K   PEV +ID
Sbjct: 110 GKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKK---PEVKSID 154

Arabidopsis thaliana (taxid: 3702)

>sp|P05478|HSP16_SOYBN 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 26/160 (16%)

Query: 24  ASQANALTPYT---QSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMET 80
             + N   P++     PF D  FP T  S         +  + +  +      R DW ET
Sbjct: 10  GRRNNVFDPFSLDVWDPFKDFPFPNTLSS--------ASFPEFSRENSAFVSTRVDWKET 61

Query: 81  PTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W-----TFGKFWRQFR 128
           P  HV   DIP +KK+ VK+++E+++VL++SGER  E       W     + GKF R+FR
Sbjct: 62  PEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFR 121

Query: 129 MHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINID 168
           +  +  ++ +KA  ENG+L VTVPK   E+ ++P+V  I+
Sbjct: 122 LPENAKVEQVKASMENGVLTVTVPK---EEVKKPDVKAIE 158

Glycine max (taxid: 3847)

>sp|Q84J50|HS177_ORYSJ 17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 15/111 (13%)

Query: 69  TLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGER------------KT 116
             A AR DW ETP +HV   D+P +KK+ VK+EV++  +L++SGER            + 
Sbjct: 48  AFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRV 107

Query: 117 EWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINI 167
           E + GKF R+FR+  +T  + IKA  ENG+L VTVPK   E+ ++P+V +I
Sbjct: 108 ERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPK---EEPKKPDVKSI 155

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
255560519	190	heat-shock protein, putative [Ricinus co	0.956	0.936	0.580	7e-55
344190172	193	heat shock protein 22 [Corylus heterophy	0.956	0.922	0.548	3e-51
297739445	284	unnamed protein product [Vitis vinifera]	0.951	0.623	0.494	1e-46
145203150	193	small heat shock protein [Cyclamen persi	0.892	0.860	0.510	1e-41
315932712	200	HSP22.9 [Citrullus lanatus]	0.838	0.78	0.502	7e-39
356550016	198	PREDICTED: 22.7 kDa class IV heat shock	0.822	0.772	0.531	8e-39
449438367	197	PREDICTED: 22.7 kDa class IV heat shock	0.913	0.862	0.5	3e-37
449431898	193	PREDICTED: 22.7 kDa class IV heat shock	0.930	0.896	0.441	3e-36
351720985	197	low molecular weight heat shock protein	0.822	0.776	0.5	1e-35
326499221	205	predicted protein [Hordeum vulgare subsp	0.881	0.8	0.412	3e-34

>gi|255560519|ref|XP_002521274.1| heat-shock protein, putative [Ricinus communis] gi|223539542|gb|EEF41130.1| heat-shock protein, putative [Ricinus communis]

 Score =  218 bits (556), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 115/198 (58%), Positives = 143/198 (72%), Gaps = 20/198 (10%)

Query: 1   MAKPRILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTI 60
           MA PR     ++FL++   +  MA+QANAL PYT+   FD+M P  E+ FR+LEQTPLTI
Sbjct: 1   MASPR---FKIMFLILPTLVFLMAAQANALLPYTRPSLFDIMMP-AEDPFRILEQTPLTI 56

Query: 61  AKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERK----- 115
            KG +   +LALARADW ETP+ HVI+LDIP +KKD+VKIEVEENR+LR+SGERK     
Sbjct: 57  PKGVE--SSLALARADWKETPSAHVISLDIPGIKKDDVKIEVEENRMLRISGERKGDEEI 114

Query: 116 -------TEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINID 168
                   E T GKFWRQFR+  + DLDHIKAH E+G+LRV VPK AEE+KRQP+VINI 
Sbjct: 115 EGEKWHRVERTNGKFWRQFRLPNNVDLDHIKAHLEDGVLRVNVPKFAEEQKRQPKVINIV 174

Query: 169 EESCNSSNEDIKATKSQM 186
           ++   SS +DIK  KS+M
Sbjct: 175 DQG--SSGQDIKTVKSEM 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|344190172|gb|AEM97868.1| heat shock protein 22 [Corylus heterophylla]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 137/197 (69%), Gaps = 19/197 (9%)

Query: 1   MAKPRILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTI 60
           M KP I A  ++   +   +  MA+QANAL PYT+   +D++ P +E+  R+LEQTPLTI
Sbjct: 1   MVKPGINASMLVVAAVTVVIGLMATQANALMPYTRPSLWDILLPYSEDPLRILEQTPLTI 60

Query: 61  AKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGER------ 114
            +G    +TL LA +DW ETPT HVI+LD+P MKKD++KIEVEENRVLR+SGER      
Sbjct: 61  PRGV---ETLTLAPSDWKETPTEHVISLDVPGMKKDDIKIEVEENRVLRISGERVGKNQE 117

Query: 115 -------KTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINI 167
                  + E T GKFWRQFR+  + DLDH+KA  E+G+LR+TVPK AEE KRQP+VINI
Sbjct: 118 VEGERWHRAERTNGKFWRQFRLPGNADLDHVKARLEDGVLRITVPKFAEE-KRQPKVINI 176

Query: 168 DEESCNSSNEDIKATKS 184
            EE   S  EDIKATK+
Sbjct: 177 AEEG--SFGEDIKATKA 191

Source: Corylus heterophylla

Species: Corylus heterophylla

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739445|emb|CBI29627.3| unnamed protein product [Vitis vinifera]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/198 (49%), Positives = 141/198 (71%), Gaps = 21/198 (10%)

Query: 1   MAKPRILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTI 60
           MAKP I+ +++    MAA L  +   A  L PYT++  +DM+ P  ++ FR+LE +P+T+
Sbjct: 68  MAKPSIIPISLFLAAMAAVLIPIP--AEGLMPYTRN-LWDMVLPF-DDPFRILEHSPITV 123

Query: 61  AKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGER------ 114
            KG    +T+ALAR+DW ET + H+ITLD+P MKK+++KIE+EENRVLR+SGER      
Sbjct: 124 PKGL---ETIALARSDWKETISAHIITLDVPGMKKEDIKIEIEENRVLRISGERTAEGEA 180

Query: 115 ------KTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINID 168
                 ++E   GKFWRQFR+  + DLD IKAH ENG+LR+T+PKLAE++K+Q +V+NI 
Sbjct: 181 EGEKWHRSERATGKFWRQFRLPANADLDRIKAHLENGVLRITIPKLAEDRKKQAKVVNIA 240

Query: 169 EESCNSSNEDIKATKSQM 186
           EE+  +S ED+ ATKS++
Sbjct: 241 EET--NSGEDVMATKSEI 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145203150|gb|ABP35941.1| small heat shock protein [Cyclamen persicum]

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/186 (51%), Positives = 124/186 (66%), Gaps = 20/186 (10%)

Query: 11  MLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTL 70
           M F+ + + L  +A + +AL PY  +   D++ P  E+ FR+LEQ PL I K     +T+
Sbjct: 9   MCFVAVLSLLLFLAPRTSALMPYRAASLLDLI-PSFEDPFRILEQGPLDIPKSP---ETV 64

Query: 71  ALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W----- 118
           ALARADW ETPT HV+T+D+P + K +VKIEVE +RVLR+SGERK E       W     
Sbjct: 65  ALARADWKETPTAHVVTVDVPGLGKGDVKIEVE-DRVLRISGERKVEKEEDKESWHRVER 123

Query: 119 TFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNSSNED 178
             G+FWRQFRM  + DL+ +KAH ENG+L VTVPKLAEEKK  P+VI I+E     + ED
Sbjct: 124 AVGRFWRQFRMPGNADLERVKAHMENGVLVVTVPKLAEEKKTGPKVIGIEE---GGAVED 180

Query: 179 IKATKS 184
           +KATKS
Sbjct: 181 VKATKS 186

Source: Cyclamen persicum

Species: Cyclamen persicum

Genus: Cyclamen

Family: Primulaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315932712|gb|ADU55786.1| HSP22.9 [Citrullus lanatus]

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 122/177 (68%), Gaps = 21/177 (11%)

Query: 26  QANALTPYTQSPFFDMMFP--MTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTI 83
           QANAL PY     +D+M P   TE+ FR+LEQ+PL++ K A    TLA+ARADW ET   
Sbjct: 29  QANALMPYRS--VWDLMQPGGYTEDPFRILEQSPLSVPKSA--VDTLAVARADWKETNEE 84

Query: 84  HVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W-------TFGKFWRQFRM 129
           HVI +DIP +K++++KIEVEENRVLR+SGE K E       W       + G+FWRQFR+
Sbjct: 85  HVIWMDIPGVKREDLKIEVEENRVLRISGEMKGEAEVEGERWHRAERMSSSGRFWRQFRL 144

Query: 130 HMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNSSNEDIKATKSQM 186
             + D++ I+AH ENG+L+V VPKL +EKKR+ +V+ I+EE   +  ED+K TK++M
Sbjct: 145 PANADVERIRAHLENGVLKVIVPKLPQEKKREAKVVKIEEEG-KAGGEDLKPTKAEM 200

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550016|ref|XP_003543386.1| PREDICTED: 22.7 kDa class IV heat shock protein-like [Glycine max]

 Score =  165 bits (417), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 121/177 (68%), Gaps = 24/177 (13%)

Query: 28  NALTPYTQSP-FFDMMFPMTEESFRVLEQTPL----TIAKGADHHQTLALARADWMETPT 82
           NAL PYT+S   +D M   +E+ FR+LE TP     T  +G D   TLALARADW ETPT
Sbjct: 28  NALMPYTRSSTLWDTMLS-SEDPFRILEHTPFSDIPTTTRGVD---TLALARADWKETPT 83

Query: 83  IHVITLDIPVMKKDNVKIEVEENRVLRVSGE-------------RKTEWTFGKFWRQFRM 129
            HVI LD+P MKK++VKIEVEENRVLR+SGE              + E T GKFWRQFR+
Sbjct: 84  AHVIALDLPGMKKEDVKIEVEENRVLRISGERKGEEEEVEGEKWHRAERTNGKFWRQFRL 143

Query: 130 HMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNSSNEDIKATKSQM 186
            ++ DL+ + A  E+G+LR+TV KL E+KKRQP+VI+I +   +S+ ED+KATK+ M
Sbjct: 144 PLNADLEKVTARLEDGVLRITVAKLGEDKKRQPKVIDIAQR--DSAAEDVKATKADM 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438367|ref|XP_004136960.1| PREDICTED: 22.7 kDa class IV heat shock protein-like [Cucumis sativus] gi|449495657|ref|XP_004159906.1| PREDICTED: 22.7 kDa class IV heat shock protein-like [Cucumis sativus]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/192 (50%), Positives = 129/192 (67%), Gaps = 22/192 (11%)

Query: 12  LFLVMAATLTNMASQ-ANALTPYTQSPFFDMMFP--MTEESFRVLEQTPLTIAKGADHHQ 68
           LFL++       A+Q ANAL PY     +D+M P   +E+ FR+LEQ+PL++ K A    
Sbjct: 11  LFLILGLAFYFFATQQANALMPYRS--IWDIMQPGGYSEDPFRILEQSPLSVPKSA--VD 66

Query: 69  TLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W--- 118
           TLA+ARADW ET T HVI +DIP +K++++KIEVEENRVLR+SGE K E       W   
Sbjct: 67  TLAVARADWKETETEHVIWMDIPGIKREDLKIEVEENRVLRISGEMKGEAEVAGERWHRA 126

Query: 119 ----TFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNS 174
               + GKFWRQFR+  + D++ IKAH ENG+L+V VPKL +EKK++ +V+ I EE   S
Sbjct: 127 ERMSSSGKFWRQFRLPGNADMEGIKAHLENGVLKVIVPKLPQEKKKEAKVVKI-EEGAKS 185

Query: 175 SNEDIKATKSQM 186
             ED+KATK+ M
Sbjct: 186 GGEDLKATKAAM 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431898|ref|XP_004133737.1| PREDICTED: 22.7 kDa class IV heat shock protein-like [Cucumis sativus] gi|449478100|ref|XP_004155223.1| PREDICTED: 22.7 kDa class IV heat shock protein-like [Cucumis sativus]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 123/197 (62%), Gaps = 24/197 (12%)

Query: 7   LAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADH 66
           L   +L L+  A L   A +  +  PYT +P+  ++   +++ FR+LEQ PLT+ +G   
Sbjct: 4   LIPAILCLLTVAFLA--AQRTESFMPYTGAPWGTVV--PSDDPFRILEQMPLTVPRG--- 56

Query: 67  HQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--------- 117
            +T+ALA+ DW ETP  H I +DIP MKK++VK+EVEENRVLR+SGERK E         
Sbjct: 57  METMALAQVDWKETPFEHKILIDIPGMKKEDVKVEVEENRVLRISGERKAETEVAMATEE 116

Query: 118 ---W-----TFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDE 169
              W       GKFWRQFRM  + +LD IKA  E+G+L + VPKL EE++RQP++I++  
Sbjct: 117 GEKWHRAERVNGKFWRQFRMPGNVNLDGIKASLEDGVLIIRVPKLVEERRRQPKIISVVG 176

Query: 170 ESCNSSNEDIKATKSQM 186
           E  +    DIK +K +M
Sbjct: 177 ERPSVGETDIKVSKDEM 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720985|ref|NP_001235147.1| low molecular weight heat shock protein Hsp22.3 precursor [Glycine max] gi|710434|gb|AAB03097.1| Hsp22.3 [Glycine max]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 117/180 (65%), Gaps = 27/180 (15%)

Query: 28  NALTPYTQSPFFDMMFPMTEESFRVLEQTPLT----IAKGADHHQTLALARADWMETPTI 83
           NAL PYT+S  +DMM   +E+ F +LEQ P      I  GA   +TLALARADW ETP+ 
Sbjct: 24  NALMPYTRSTLWDMML-QSEDPFGILEQNPFNNIPNIRGGA---ETLALARADWKETPSA 79

Query: 84  HVITLDIPVMKKDNVKIEVEENRVLRVSGE-----------------RKTEWTFGKFWRQ 126
           HVI LD+P MKK +VKIEVEE+RVLR+SGE                  + E T GKF RQ
Sbjct: 80  HVIVLDLPGMKKKDVKIEVEESRVLRISGERKGEEEEEEEEVEGEKWHRAERTNGKFMRQ 139

Query: 127 FRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNSSNEDIKATKSQM 186
           FR+ ++ DL+ + A  ENG+LR+TV K  E+KKRQP+VI+I +   +S+ E++K TK QM
Sbjct: 140 FRLPVNADLEKVTARLENGVLRITVGKFGEDKKRQPKVIDIAQR--DSAAENVKPTKPQM 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326499221|dbj|BAK06101.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326533628|dbj|BAK05345.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 116/194 (59%), Gaps = 30/194 (15%)

Query: 19  TLTNMASQANALTPY-TQSPFFDMMFPMTEESFRVLEQTPLTIAK-------GADHHQTL 70
            L  +A     L PY   S  +D++    ++ FRVLEQ PL + +        A     +
Sbjct: 16  ALAVLAPPVAGLVPYGVSSGLWDLL----DDPFRVLEQAPLAVQRPASAGDPAASVSSPM 71

Query: 71  ALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W----- 118
           ALAR DW ETP  HVI+LD+P +++D+VK+EVEENRVLRVSGERK +       W     
Sbjct: 72  ALARCDWKETPDAHVISLDVPGVRRDDVKVEVEENRVLRVSGERKADEEKEGERWHRAER 131

Query: 119 TFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNS---- 174
             G+FWR+FRM    D++ + A  E+G+L VTVPK+AE ++R+P VINI  E+ N+    
Sbjct: 132 AAGRFWRRFRMPAGADVERVTARLEDGVLTVTVPKIAEHQRREPRVINIAGEASNNGGKG 191

Query: 175 --SNEDIKATKSQM 186
             +  ++ ++KS+M
Sbjct: 192 AGAGAEVTSSKSEM 205

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
UNIPROTKB|Q53M11	206	HSP21.9 "21.9 kDa heat shock p	0.564	0.509	0.418	1.6e-28
TAIR|locus:2122774	195	ATHSP22.0 "AT4G10250" [Arabido	0.833	0.794	0.420	7.3e-27
UNIPROTKB|Q7XUW5	215	HSP23.2 "23.2 kDa heat shock p	0.887	0.767	0.335	2.4e-21
TAIR|locus:2075256	156	HSP17.4 "heat shock protein 17	0.586	0.698	0.420	1.4e-18
TAIR|locus:2174269	161	HSP18.2 "heat shock protein 18	0.741	0.857	0.381	1.4e-18
TAIR|locus:2042977	153	AT2G29500 "AT2G29500" [Arabido	0.586	0.712	0.418	2.2e-18
TAIR|locus:2024862	157	AT1G53540 [Arabidopsis thalian	0.5	0.592	0.444	2.8e-18
UNIPROTKB|Q41560	151	hsp16.9B "16.9 kDa class I hea	0.688	0.847	0.397	3.6e-18
UNIPROTKB|Q943E7	149	HSP16.9C "16.9 kDa class I hea	0.666	0.832	0.412	4.6e-18
UNIPROTKB|P31673	154	HSP17.4 "17.4 kDa class I heat	0.494	0.597	0.485	7.5e-18

UNIPROTKB|Q53M11 HSP21.9 "21.9 kDa heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 195 (73.7 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 51/122 (41%), Positives = 71/122 (58%)

Query:     1 MAKPRILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTI 60
             +A+  +L M      +AA +  MA  A AL PY      D       + FRVLEQ+PL  
Sbjct:     4 VAEREVLGMVA---AVAAMVVMMAPPAAALVPYGYGYMLD-------DPFRVLEQSPLRP 53

Query:    61 AKG------ADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEE-NRVLRVSGE 113
             A G      A     +ALAR DW ETP  HV+T+D+P +++ +V++EV+E +RVLRVSGE
Sbjct:    54 AGGVAAAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGE 113

Query:   114 RK 115
             R+
Sbjct:   114 RR 115

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:2122774 ATHSP22.0 "AT4G10250" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 71/169 (42%), Positives = 99/169 (58%)

Query:    14 LVMAATLTNMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALA 73
             L++    T+  S ++AL     S   D+      + F++LE+ PL + +  D    L+ A
Sbjct:    14 LLLGNIKTSEGSLSSALETTPGSLLSDLWLDRFPDPFKILERIPLGLER--DTSVALSPA 71

Query:    74 RADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W-----TFG 121
             R DW ET   H I LDIP +KKD VKIEVEEN VLRVSGERK E       W     ++G
Sbjct:    72 RVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYG 131

Query:   122 KFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEE 170
             KFWRQF++  + D++ +KA  ENG+L + + KL+ EK + P V+NI  E
Sbjct:   132 KFWRQFKLPDNVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIAAE 180

GO:0003674 "molecular_function" evidence=ND

GO:0009408 "response to heat" evidence=IEP;ISS;RCA

GO:0009507 "chloroplast" evidence=ISM

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q7XUW5 HSP23.2 "23.2 kDa heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 63/188 (33%), Positives = 96/188 (51%)

Query:     1 MAKPRILAMTMLFLVMAATLTNMASQANALTPYTQSPFFDMMFP-----MTEESFRVLEQ 55
             MA  R  A   +   +A  L + A+    L  +      D   P        + FR+LE 
Sbjct:     1 MASMRTAAAAAMLACIAVVLASTAADGALLPWFGGGGARDEAVPELGLLAAADPFRILEH 60

Query:    56 TPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERK 115
              P    +  D    L++AR DW ET   H + +D+P M+K+++++EVE+NRVLR+SGER+
Sbjct:    61 VPFGFDR--DDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERR 118

Query:   116 TE-----------W-----TFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKK 159
              E           W     ++G+FWRQ R+  + DLD I A  +NG+L V   KLA ++ 
Sbjct:   119 REETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTVRFRKLAPDQI 178

Query:   160 RQPEVINI 167
             + P V+ I
Sbjct:   179 KGPRVVGI 186

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:2075256 HSP17.4 "heat shock protein 17.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 53/126 (42%), Positives = 74/126 (58%)

Query:    56 TP-LTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGER 114
             TP LT A   D       A+ DW ETP  HV   D+P +KK+ VK+EVE+  +L++SGER
Sbjct:    32 TPGLTNAPAKDV-AAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGER 90

Query:   115 KTE-------W-----TFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQP 162
              +E       W     + GKF R+FR+  +  ++ +KA  ENG+L VTVPK+ E K   P
Sbjct:    91 SSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESK---P 147

Query:   163 EVINID 168
             EV ++D
Sbjct:   148 EVKSVD 153

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:2174269 HSP18.2 "heat shock protein 18.2" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 61/160 (38%), Positives = 83/160 (51%)

Query:    26 QANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHV 85
             ++N   P++Q    D+  P   E F     + L  A  A        AR DW ETP  HV
Sbjct:    12 RSNVFDPFSQ----DLWDPF--EGF-FTPSSALANASTARDVAAFTNARVDWKETPEAHV 64

Query:    86 ITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W-----TFGKFWRQFRMHMST 133
                D+P +KK+ VK+EVE+  VL++SGER  E       W       GKF R+FR+  + 
Sbjct:    65 FKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENA 124

Query:   134 DLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCN 173
              ++ +KA  ENG+L V VPK A EKK  P+V +ID    N
Sbjct:   125 KMEEVKATMENGVLTVVVPK-APEKK--PQVKSIDISGAN 161

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0010286 "heat acclimation" evidence=IEP

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

TAIR|locus:2042977 AT2G29500 "AT2G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 51/122 (41%), Positives = 72/122 (59%)

Query:    58 LTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE 117
             LT +  +  +  +  AR DW ETP  HV   D+P +KK+ VK+E+EE+ VL++SGER  E
Sbjct:    31 LTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVE 90

Query:   118 -------W-----TFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVI 165
                    W     + G+F R+FR+  +  +D +KA  ENG+L VTVPK AE KK   + I
Sbjct:    91 KEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPK-AETKKADVKSI 149

Query:   166 NI 167
              I
Sbjct:   150 QI 151

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=IEP;ISS;RCA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2024862 AT1G53540 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 48/108 (44%), Positives = 68/108 (62%)

Query:    73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------W-----TF 120
             A+ DW ETP  HV   D+P ++K+ VK+EVE+  +L++SGER  E       W     + 
Sbjct:    50 AKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSS 109

Query:   121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINID 168
             GKF R+FR+  +  ++ IKA  ENG+L VTVPK+ E+K   PEV +ID
Sbjct:   110 GKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKK---PEVKSID 154

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=ISS;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q41560 hsp16.9B "16.9 kDa class I heat shock protein 2" [Triticum aestivum (taxid:4565)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 56/141 (39%), Positives = 73/141 (51%)

Query:    39 FDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNV 98
             FD    +  + F         I+ G       A AR DW ETP  HV   D+P +KK+ V
Sbjct:    10 FDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEV 69

Query:    99 KIEVEENRVLRVSGERKTE-------W-----TFGKFWRQFRMHMSTDLDHIKAHTENGI 146
             K+EVE+  VL VSGER  E       W     + GKF R+FR+     ++ +KA  ENG+
Sbjct:    70 KVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGV 129

Query:   147 LRVTVPKLAEEKKRQPEVINI 167
             L VTVPK AE KK + + I I
Sbjct:   130 LTVTVPK-AEVKKPEVKAIQI 149

GO:0051260 "protein homooligomerization" evidence=IDA

UNIPROTKB|Q943E7 HSP16.9C "16.9 kDa class I heat shock protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 59/143 (41%), Positives = 77/143 (53%)

Query:    37 PFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKD 96
             PF D   P  +  FR L   P T  +        A AR DW ETP  HV   D+P +KK+
Sbjct:    12 PFADFWDPF-DGVFRSL--VPATSDRDT---AAFANARVDWKETPESHVFKADLPGVKKE 65

Query:    97 NVKIEVEENRVLRVSGERKTE-------W-----TFGKFWRQFRMHMSTDLDHIKAHTEN 144
              VK+EVEE  VL +SG+R  E       W     + G+F R+FR+  +  +D +KA  EN
Sbjct:    66 EVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMEN 125

Query:   145 GILRVTVPKLAEEKKRQPEVINI 167
             G+L VTVPK AE KK + + I I
Sbjct:   126 GVLTVTVPK-AEVKKPEVKAIEI 147

GO:0009408 "response to heat" evidence=IEP

UNIPROTKB|P31673 HSP17.4 "17.4 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 52/107 (48%), Positives = 69/107 (64%)

Query:    73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGER------KTE-W-----TF 120
             AR DW ETP  HV   D+P +KK+ VK+EVE+  VL++SGER      KT+ W     + 
Sbjct:    47 ARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSS 106

Query:   121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINI 167
             GKF R+FR+  +T  + IKA  ENG+L VTVPK  EE K+ P+V +I
Sbjct:   107 GKFLRRFRLPENTKPEQIKASMENGVLTVTVPK--EEPKK-PDVKSI 150

GO:0009408 "response to heat" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0045471 "response to ethanol" evidence=IEP

GO:0046685 "response to arsenic-containing substance" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0046688 "response to copper ion" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38806	HSP22_ARATH	No assigned EC number	0.4171	0.8440	0.8051	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
cd06472	92	cd06472, ACD_ScHsp26_like, Alpha crystallin domain	7e-32
pfam00011	101	pfam00011, HSP20, Hsp20/alpha crystallin family	5e-22
cd06464	88	cd06464, ACD_sHsps-like, Alpha-crystallin domain (	2e-18
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	3e-16
COG0071	146	COG0071, IbpA, Molecular chaperone (small heat sho	2e-14
cd06471	93	cd06471, ACD_LpsHSP_like, Group of bacterial prote	2e-10
pfam00347	76	pfam00347, Ribosomal_L6, Ribosomal protein L6	8e-04
cd06470	90	cd06470, ACD_IbpA-B_like, Alpha-crystallin domain	0.001

>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

 Score =  110 bits (276), Expect = 7e-32
 Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 12/92 (13%)

Query: 74  RADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKT------------EWTFG 121
           R DW ETP  HV   D+P +KK++VK+EVE+ RVLR+SGERK             E + G
Sbjct: 1   RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSG 60

Query: 122 KFWRQFRMHMSTDLDHIKAHTENGILRVTVPK 153
           +F R+FR+  + D D +KA  ENG+L VTVPK
Sbjct: 61  RFVRRFRLPENADADEVKAFLENGVLTVTVPK 92

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative stress. Also belonging to this group is wheat HSP16.9 which differs in quaternary structure from the shell-type particles of ScHsp26, it assembles as a dodecameric double disc, with each disc organized as a trimer of dimers. Length = 92

>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family

 Score = 85.3 bits (212), Expect = 5e-22
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 10/101 (9%)

Query: 76  DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERK---------TEWTFGKFWRQ 126
           D  E     V+ LD+P  K + +K++VE+NRVL      K         +E ++  F R+
Sbjct: 1   DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRK 60

Query: 127 FRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINI 167
           F +  + D D +KA  ++G+L VTVPKL   +K +P  I I
Sbjct: 61  FVLPENADPDKVKASLKDGVLTVTVPKLEPPEK-KPRRIQI 100

Length = 101

>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

 Score = 75.7 bits (187), Expect = 2e-18
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 12/89 (13%)

Query: 76  DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKT-----------EWTFGKFW 124
           D  ET   +V+  D+P  KK+++K+EVE+  VL +SGER+            E ++G F 
Sbjct: 1   DVYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEENYLRRERSYGSFS 59

Query: 125 RQFRMHMSTDLDHIKAHTENGILRVTVPK 153
           R FR+    D D IKA  ENG+L +T+PK
Sbjct: 60  RSFRLPEDVDPDKIKASLENGVLTITLPK 88

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 69.5 bits (171), Expect = 3e-16
 Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 5/81 (6%)

Query: 77  WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKT----EWTFGKFWRQFRMHMS 132
           W +T    V+T+D+P +KK+++K+EVE+N  L +SG+R+     E ++G+F R F +   
Sbjct: 1   WYQTDDEVVVTVDLPGVKKEDIKVEVEDNV-LTISGKREEEEERERSYGEFERSFELPED 59

Query: 133 TDLDHIKAHTENGILRVTVPK 153
            D +  KA  ENG+L +T+PK
Sbjct: 60  VDPEKSKASLENGVLEITLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 29/159 (18%)

Query: 22  NMASQANALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETP 81
            M ++ +       SP FD +F                +               D  ET 
Sbjct: 5   AMRNRFDFFPLLRDSPGFDRLFREFGNLPESRPTGTPPV---------------DIEETD 49

Query: 82  TIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWT------------FGKFWRQFRM 129
             + IT ++P + K++++I VE N  L + GER+ E              +G+F R FR+
Sbjct: 50  DEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRL 108

Query: 130 HMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINID 168
               D + IKA  +NG+L VT+PK   E+K+ P+ I I+
Sbjct: 109 PEKVDPEVIKAKYKNGLLTVTLPKAEPEEKK-PKRIEIE 146

Length = 146

>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 16/94 (17%)

Query: 74  RADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKT--------------EWT 119
           + D  ET   +++  D+P  KK+++K++ ++   L +S +R                E  
Sbjct: 2   KTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERY 60

Query: 120 FGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPK 153
           +G F R F +  + D + IKA  ENG+L++T+PK
Sbjct: 61  YGSFSRSFYLP-NVDEEEIKAKYENGVLKITLPK 93

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic membrane. Length = 93

>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 84  HVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWT-FGKFWRQFRMH 130
             +T +IP      V ++VE+  V+ VSG  K +   F      +R  
Sbjct: 22  GELTREIP----PGVTVKVEKITVIIVSGIDKEKVGQFAALIGTYRAP 65

Length = 76

>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)

Query: 84  HVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFW-------RQFRMHMSTDL- 135
           + ITL +    +D+++IEVE N  L V+G++  E    + +       R F    S +L 
Sbjct: 13  YRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEENEEREYLHRGIAKRAFE--RSFNLA 69

Query: 136 DHIK---AHTENGILRV 149
           DH+K   A  ENG+L +
Sbjct: 70  DHVKVKGAELENGLLTI 86

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 600-kDa structures. This elevated activity seen under heat shock conditions is retained for an extended period of time after the temperature is returned to normal. IbpA also forms multimers. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
PRK10743	137	heat shock protein IbpA; Provisional	99.94
PRK11597	142	heat shock chaperone IbpB; Provisional	99.94
COG0071	146	IbpA Molecular chaperone (small heat shock protein	99.93
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	99.9
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	99.9
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	99.89
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	99.88
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	99.87
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	99.87
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	99.87
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	99.87
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	99.86
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	99.86
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	99.84
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	99.83
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	99.82
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	99.81
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	99.79
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	99.71
KOG3591	173	consensus Alpha crystallins [Posttranslational mod	99.67
KOG0710	196	consensus Molecular chaperone (small heat-shock pr	99.65
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.53
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.32
cd06463	84	p23_like Proteins containing this p23_like domain	99.07
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	99.05
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	98.85
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	98.55
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	98.23
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	98.18
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	98.13
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	97.92
cd06488	87	p23_melusin_like p23_like domain similar to the C-	97.88
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	97.85
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	97.8
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	97.46
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	97.41
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.89
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	96.61
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	96.07
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	95.88
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	95.4
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	88.29
KOG2265	179	consensus Nuclear distribution protein NUDC [Signa	80.46

>PRK10743 heat shock protein IbpA; Provisional

Probab=99.94  E-value=2e-26  Score=178.02  Aligned_cols=94  Identities=18%  Similarity=0.311  Sum_probs=82.8

Q ss_pred             ccceeEEEE-CCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece----------eeeeEEEEEEEcCCCCCcCceE
Q 039719           71 ALARADWME-TPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE----------WTFGKFWRQFRMHMSTDLDHIK  139 (186)
Q Consensus        71 ~~p~vdi~e-~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~----------~~~~~f~R~~~LP~~vd~~~i~  139 (186)
                      ..|++||++ ++++|.|+++|||++++||+|++++ +.|+|+|+++.+          +++|+|+|+|.||.+||.++  
T Consensus        33 ~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--  109 (137)
T PRK10743         33 GYPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--  109 (137)
T ss_pred             CCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--
Confidence            348899994 8999999999999999999999999 899999997653          47899999999999999994  


Q ss_pred             EEEeCCEEEEEEeccCcccCCCCeEEEec
Q 039719          140 AHTENGILRVTVPKLAEEKKRQPEVINID  168 (186)
Q Consensus       140 A~~~nGvL~I~lPK~~~~~~~~~k~I~I~  168 (186)
                      |+|+||||+|++||..++ ..++|+|+|+
T Consensus       110 A~~~dGVL~I~lPK~~~~-~~~~r~I~I~  137 (137)
T PRK10743        110 ANLVNGLLYIDLERVIPE-AKKPRRIEIN  137 (137)
T ss_pred             CEEeCCEEEEEEeCCCcc-ccCCeEEeeC
Confidence            999999999999997443 2358999985

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=99.94  E-value=2.2e-26  Score=178.58  Aligned_cols=99  Identities=19%  Similarity=0.278  Sum_probs=85.9

Q ss_pred             cccceeEEEE-CCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece----------eeeeEEEEEEEcCCCCCcCce
Q 039719           70 LALARADWME-TPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE----------WTFGKFWRQFRMHMSTDLDHI  138 (186)
Q Consensus        70 ~~~p~vdi~e-~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~----------~~~~~f~R~~~LP~~vd~~~i  138 (186)
                      ...|++||+| ++++|.|+++|||++++||+|++++ |.|+|+|+++.+          +.+|+|+|+|.||++||.+  
T Consensus        30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--  106 (142)
T PRK11597         30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--  106 (142)
T ss_pred             CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--
Confidence            3568899998 5789999999999999999999999 899999997542          4889999999999999998  


Q ss_pred             EEEEeCCEEEEEEeccCcccCCCCeEEEeccCCC
Q 039719          139 KAHTENGILRVTVPKLAEEKKRQPEVINIDEESC  172 (186)
Q Consensus       139 ~A~~~nGvL~I~lPK~~~~~~~~~k~I~I~~~~~  172 (186)
                      +|+|+||||+|++||..++ ..++|+|+|+...+
T Consensus       107 ~A~~~nGVL~I~lPK~~~~-~~~~rkI~I~~~~~  139 (142)
T PRK11597        107 GATFVNGLLHIDLIRNEPE-AIAPQRIAISERPA  139 (142)
T ss_pred             cCEEcCCEEEEEEeccCcc-ccCCcEEEECCccc
Confidence            6999999999999997433 23689999987543

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=7.4e-25  Score=170.52  Aligned_cols=97  Identities=36%  Similarity=0.577  Sum_probs=88.5

Q ss_pred             cccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece------------eeeeEEEEEEEcCCCCCcCc
Q 039719           70 LALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE------------WTFGKFWRQFRMHMSTDLDH  137 (186)
Q Consensus        70 ~~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~------------~~~~~f~R~~~LP~~vd~~~  137 (186)
                      ...|++||+++++.|.|.++|||++++||+|++++ +.|+|+|++..+            +.+|.|+|+|.||..|+++.
T Consensus        38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~  116 (146)
T COG0071          38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV  116 (146)
T ss_pred             CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence            36899999999999999999999999999999999 899999999752            48999999999999999999


Q ss_pred             eEEEEeCCEEEEEEeccCcccCCCCeEEEec
Q 039719          138 IKAHTENGILRVTVPKLAEEKKRQPEVINID  168 (186)
Q Consensus       138 i~A~~~nGvL~I~lPK~~~~~~~~~k~I~I~  168 (186)
                      ++|+|+||+|+|++||.++++ .++++|+|+
T Consensus       117 ~~A~~~nGvL~I~lpk~~~~~-~~~~~i~I~  146 (146)
T COG0071         117 IKAKYKNGLLTVTLPKAEPEE-KKPKRIEIE  146 (146)
T ss_pred             eeeEeeCcEEEEEEecccccc-ccCceeecC
Confidence            999999999999999998764 457888874

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=99.90  E-value=2e-23  Score=150.40  Aligned_cols=80  Identities=56%  Similarity=0.931  Sum_probs=73.9

Q ss_pred             eeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece------------eeeeEEEEEEEcCCCCCcCceEEE
Q 039719           74 RADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE------------WTFGKFWRQFRMHMSTDLDHIKAH  141 (186)
Q Consensus        74 ~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~------------~~~~~f~R~~~LP~~vd~~~i~A~  141 (186)
                      ++||+|++++|+|.++|||++++||+|++++++.|+|+|++..+            +.+|+|.|+|.||.+||.+.|+|+
T Consensus         1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~   80 (92)
T cd06472           1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF   80 (92)
T ss_pred             CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence            48999999999999999999999999999874589999997532            468999999999999999999999


Q ss_pred             EeCCEEEEEEec
Q 039719          142 TENGILRVTVPK  153 (186)
Q Consensus       142 ~~nGvL~I~lPK  153 (186)
                      |+||+|+|++||
T Consensus        81 ~~nGvL~I~lPK   92 (92)
T cd06472          81 LENGVLTVTVPK   92 (92)
T ss_pred             EECCEEEEEecC
Confidence            999999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=99.90  E-value=7.7e-23  Score=149.05  Aligned_cols=92  Identities=40%  Similarity=0.649  Sum_probs=78.3

Q ss_pred             EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece----------eeeeEEEEEEEcCCCCCcCceEEEEeCC
Q 039719           76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE----------WTFGKFWRQFRMHMSTDLDHIKAHTENG  145 (186)
Q Consensus        76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~----------~~~~~f~R~~~LP~~vd~~~i~A~~~nG  145 (186)
                      ||.+++++|.|.++|||++++||+|++++ +.|+|+|++...          +.++.|.|+|.||.++|.++|+|.|+||
T Consensus         1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G   79 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG   79 (102)
T ss_dssp             EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred             CeEECCCEEEEEEECCCCChHHEEEEEec-CccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence            79999999999999999999999999999 799999999822          3668999999999999999999999999


Q ss_pred             EEEEEEeccCcccCCCCeEEEec
Q 039719          146 ILRVTVPKLAEEKKRQPEVINID  168 (186)
Q Consensus       146 vL~I~lPK~~~~~~~~~k~I~I~  168 (186)
                      +|+|++||....+...+++|+|+
T Consensus        80 vL~I~~pk~~~~~~~~~~~I~I~  102 (102)
T PF00011_consen   80 VLTITIPKKEEEEDSQPKRIPIK  102 (102)
T ss_dssp             EEEEEEEBSSSCTTSSSCEE-ET
T ss_pred             EEEEEEEccccccCCCCeEEEeC
Confidence            99999999988765578999985

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=99.89  E-value=1.9e-22  Score=144.17  Aligned_cols=77  Identities=18%  Similarity=0.387  Sum_probs=72.4

Q ss_pred             EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCCEEEE
Q 039719           76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENGILRV  149 (186)
Q Consensus        76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL~I  149 (186)
                      +|++++++|.|.++|||++++||+|++.+ +.|+|+|++...     +..+.|.|+|.||++||.++|+|+| +||+|+|
T Consensus         4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I   82 (86)
T cd06497           4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF   82 (86)
T ss_pred             eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEE
Confidence            79999999999999999999999999999 899999997543     6677899999999999999999999 8999999


Q ss_pred             EEec
Q 039719          150 TVPK  153 (186)
Q Consensus       150 ~lPK  153 (186)
                      ++||
T Consensus        83 ~~PK   86 (86)
T cd06497          83 SGPK   86 (86)
T ss_pred             EecC
Confidence            9998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=99.88  E-value=2.4e-22  Score=142.27  Aligned_cols=77  Identities=10%  Similarity=0.228  Sum_probs=72.6

Q ss_pred             EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece--eeeeEEEEEEEcCCCCCcCceEEEE-eCCEEEEEEe
Q 039719           76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--WTFGKFWRQFRMHMSTDLDHIKAHT-ENGILRVTVP  152 (186)
Q Consensus        76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~--~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL~I~lP  152 (186)
                      ||.|++++|.|.++|||++++||+|++++ +.|+|+|+++.+  ..+|+|+|+|.||.+||+++|+|+| +||+|+|+++
T Consensus         2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~   80 (81)
T cd06479           2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKAR   80 (81)
T ss_pred             CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEec
Confidence            68999999999999999999999999999 899999998654  5689999999999999999999997 9999999998


Q ss_pred             c
Q 039719          153 K  153 (186)
Q Consensus       153 K  153 (186)
                      +
T Consensus        81 ~   81 (81)
T cd06479          81 R   81 (81)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=99.87  E-value=6.9e-22  Score=140.35  Aligned_cols=77  Identities=16%  Similarity=0.367  Sum_probs=71.4

Q ss_pred             EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCCEEEE
Q 039719           76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENGILRV  149 (186)
Q Consensus        76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL~I  149 (186)
                      +|.+++++|.|.++||||+++||+|++.+ +.|+|+|++...     +..+.|.|+|.||.+||.++|+|+| +||+|+|
T Consensus         1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I   79 (83)
T cd06478           1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTI   79 (83)
T ss_pred             CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEE
Confidence            47899999999999999999999999999 899999987643     5667899999999999999999999 7999999


Q ss_pred             EEec
Q 039719          150 TVPK  153 (186)
Q Consensus       150 ~lPK  153 (186)
                      ++||
T Consensus        80 ~~PK   83 (83)
T cd06478          80 SGPR   83 (83)
T ss_pred             EecC
Confidence            9997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=99.87  E-value=6.6e-22  Score=142.47  Aligned_cols=79  Identities=33%  Similarity=0.603  Sum_probs=73.4

Q ss_pred             ceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece--------------eeeeEEEEEEEcCCCCCcCce
Q 039719           73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--------------WTFGKFWRQFRMHMSTDLDHI  138 (186)
Q Consensus        73 p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~--------------~~~~~f~R~~~LP~~vd~~~i  138 (186)
                      +++||+|++++|+|.++|||++++||+|++++ +.|+|+|++...              +.+|+|.|+|.|| ++|.+.|
T Consensus         1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i   78 (93)
T cd06471           1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI   78 (93)
T ss_pred             CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence            36999999999999999999999999999999 899999998641              3789999999999 7999999


Q ss_pred             EEEEeCCEEEEEEec
Q 039719          139 KAHTENGILRVTVPK  153 (186)
Q Consensus       139 ~A~~~nGvL~I~lPK  153 (186)
                      +|+|+||+|+|++||
T Consensus        79 ~A~~~dGvL~I~lPK   93 (93)
T cd06471          79 KAKYENGVLKITLPK   93 (93)
T ss_pred             EEEEECCEEEEEEcC
Confidence            999999999999998

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=99.87  E-value=9.3e-22  Score=140.09  Aligned_cols=77  Identities=18%  Similarity=0.349  Sum_probs=71.5

Q ss_pred             EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEEe-CCEEEEE
Q 039719           77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHTE-NGILRVT  150 (186)
Q Consensus        77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~~-nGvL~I~  150 (186)
                      +++++++|.|.++||||+++||+|++.+ +.|+|+|++..+     +..+.|.|+|.||.+||.++|+|+|+ ||+|+|+
T Consensus         2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~   80 (84)
T cd06498           2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVC   80 (84)
T ss_pred             eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEE
Confidence            5788999999999999999999999999 899999987553     67789999999999999999999995 9999999


Q ss_pred             Eecc
Q 039719          151 VPKL  154 (186)
Q Consensus       151 lPK~  154 (186)
                      +||+
T Consensus        81 lPk~   84 (84)
T cd06498          81 GPRK   84 (84)
T ss_pred             EeCC
Confidence            9985

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=99.87  E-value=1.6e-21  Score=139.41  Aligned_cols=77  Identities=17%  Similarity=0.388  Sum_probs=72.6

Q ss_pred             eEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEEe-CCEEE
Q 039719           75 ADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHTE-NGILR  148 (186)
Q Consensus        75 vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~~-nGvL~  148 (186)
                      .||+|++++|.|.++|||++++||+|++.+ +.|+|+|++...     +..++|+|+|.||.+||.++|+|+|. ||+|+
T Consensus         3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~   81 (86)
T cd06475           3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT   81 (86)
T ss_pred             ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence            589999999999999999999999999999 799999998653     57789999999999999999999996 99999


Q ss_pred             EEEe
Q 039719          149 VTVP  152 (186)
Q Consensus       149 I~lP  152 (186)
                      |++|
T Consensus        82 I~lP   85 (86)
T cd06475          82 VEAP   85 (86)
T ss_pred             EEec
Confidence            9998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=99.86  E-value=4.2e-21  Score=138.07  Aligned_cols=78  Identities=27%  Similarity=0.385  Sum_probs=71.3

Q ss_pred             ceeEEEECC-CEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----------eeeeEEEEEEEcCCCCCcCceEE
Q 039719           73 ARADWMETP-TIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----------WTFGKFWRQFRMHMSTDLDHIKA  140 (186)
Q Consensus        73 p~vdi~e~~-~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----------~~~~~f~R~~~LP~~vd~~~i~A  140 (186)
                      |++||+|++ ++|.|.++|||++++||+|++++ +.|+|+|++...           +.+|+|.|+|.||.++|.+  +|
T Consensus         1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A   77 (90)
T cd06470           1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA   77 (90)
T ss_pred             CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence            579999975 99999999999999999999999 899999998654           3689999999999999875  89


Q ss_pred             EEeCCEEEEEEec
Q 039719          141 HTENGILRVTVPK  153 (186)
Q Consensus       141 ~~~nGvL~I~lPK  153 (186)
                      +|+||+|+|++|+
T Consensus        78 ~~~~GvL~I~l~~   90 (90)
T cd06470          78 ELENGLLTIDLER   90 (90)
T ss_pred             EEeCCEEEEEEEC
Confidence            9999999999985

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=99.86  E-value=3.6e-21  Score=136.81  Aligned_cols=76  Identities=20%  Similarity=0.326  Sum_probs=70.0

Q ss_pred             EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEEe-CCEEEEE
Q 039719           77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHTE-NGILRVT  150 (186)
Q Consensus        77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~~-nGvL~I~  150 (186)
                      +..++++|.|.++|||++++||+|++.+ +.|+|+|++...     +..+.|+|+|.||.+||.++|+|+|. ||+|+|+
T Consensus         2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~   80 (83)
T cd06476           2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQ   80 (83)
T ss_pred             eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEE
Confidence            3467899999999999999999999999 899999998543     67889999999999999999999995 9999999


Q ss_pred             Eec
Q 039719          151 VPK  153 (186)
Q Consensus       151 lPK  153 (186)
                      +||
T Consensus        81 ~Pr   83 (83)
T cd06476          81 APR   83 (83)
T ss_pred             ecC
Confidence            997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=99.84  E-value=2.7e-20  Score=132.37  Aligned_cols=73  Identities=23%  Similarity=0.368  Sum_probs=68.1

Q ss_pred             ECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCCEEEEEEe
Q 039719           79 ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENGILRVTVP  152 (186)
Q Consensus        79 e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL~I~lP  152 (186)
                      |++++|.|+++|||++++||+|++.+ +.|+|+|++..+     +..++|+|+|.||.+||.++|+|+| +||+|+|+.|
T Consensus         4 e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~   82 (83)
T cd06477           4 EGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK   82 (83)
T ss_pred             cCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence            68899999999999999999999999 899999998653     6778999999999999999999998 8999999976

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=99.83  E-value=3.7e-20  Score=132.61  Aligned_cols=74  Identities=19%  Similarity=0.431  Sum_probs=68.2

Q ss_pred             ECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece---------eeeeEEEEEEEcCCCCCcCceEEEE-eCCEEE
Q 039719           79 ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE---------WTFGKFWRQFRMHMSTDLDHIKAHT-ENGILR  148 (186)
Q Consensus        79 e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~---------~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL~  148 (186)
                      +.+++|.|.++||||+++||+|++++ +.|+|+|++...         +.+|+|.|+|.||.+||.+.|+|+| +||+|+
T Consensus         4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~   82 (87)
T cd06481           4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLH   82 (87)
T ss_pred             CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEE
Confidence            56789999999999999999999999 899999997543         3679999999999999999999999 999999


Q ss_pred             EEEec
Q 039719          149 VTVPK  153 (186)
Q Consensus       149 I~lPK  153 (186)
                      |++|+
T Consensus        83 I~~P~   87 (87)
T cd06481          83 IRAPR   87 (87)
T ss_pred             EEcCC
Confidence            99995

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.82  E-value=7.6e-20  Score=129.42  Aligned_cols=72  Identities=24%  Similarity=0.476  Sum_probs=67.8

Q ss_pred             CCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEEeC-CEEEEEEec
Q 039719           81 PTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHTEN-GILRVTVPK  153 (186)
Q Consensus        81 ~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~~n-GvL~I~lPK  153 (186)
                      +++|.|.++||||+++||+|++++ +.|+|+|++...     +.+++|.|+|.||.+||.++++|+|.| |+|+|++||
T Consensus         6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526           6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            369999999999999999999999 899999998764     678999999999999999999999998 999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=99.81  E-value=1.6e-19  Score=129.48  Aligned_cols=72  Identities=18%  Similarity=0.405  Sum_probs=66.6

Q ss_pred             CCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece--------eeeeEEEEEEEcCCCCCcCceEEEEeCC-EEEEE
Q 039719           80 TPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--------WTFGKFWRQFRMHMSTDLDHIKAHTENG-ILRVT  150 (186)
Q Consensus        80 ~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~--------~~~~~f~R~~~LP~~vd~~~i~A~~~nG-vL~I~  150 (186)
                      ++++|+|.++|||++++||+|++.+ +.|+|+|+++..        +.+|+|.|+|.||.+||.++|+|+|+|| +|+|.
T Consensus         6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~   84 (87)
T cd06482           6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE   84 (87)
T ss_pred             cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence            5789999999999999999999999 899999998642        6899999999999999999999999776 99998


Q ss_pred             Ee
Q 039719          151 VP  152 (186)
Q Consensus       151 lP  152 (186)
                      -|
T Consensus        85 ~~   86 (87)
T cd06482          85 TP   86 (87)
T ss_pred             eC
Confidence            76

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.79  E-value=6.3e-19  Score=123.77  Aligned_cols=77  Identities=47%  Similarity=0.758  Sum_probs=72.3

Q ss_pred             EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----------eeeeEEEEEEEcCCCCCcCceEEEEeC
Q 039719           76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----------WTFGKFWRQFRMHMSTDLDHIKAHTEN  144 (186)
Q Consensus        76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----------~~~~~f~R~~~LP~~vd~~~i~A~~~n  144 (186)
                      ++.|++++|.|.++|||+++++|+|++.+ +.|.|+|++...           +.++.|.|+|.||.++|.+.++|.|+|
T Consensus         1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~   79 (88)
T cd06464           1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN   79 (88)
T ss_pred             CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC
Confidence            57899999999999999999999999999 899999998853           458999999999999999999999999


Q ss_pred             CEEEEEEec
Q 039719          145 GILRVTVPK  153 (186)
Q Consensus       145 GvL~I~lPK  153 (186)
                      |+|+|++||
T Consensus        80 G~L~I~~pk   88 (88)
T cd06464          80 GVLTITLPK   88 (88)
T ss_pred             CEEEEEEcC
Confidence            999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=99.71  E-value=5.2e-17  Score=117.30  Aligned_cols=75  Identities=13%  Similarity=0.274  Sum_probs=69.7

Q ss_pred             EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEEe-CCEEEEE
Q 039719           77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHTE-NGILRVT  150 (186)
Q Consensus        77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~~-nGvL~I~  150 (186)
                      +..+++.|.|.+++.||++|||+|++.+ +.|+|+|++...     +..++|.|+|.||.+||.+.|+|+|. ||+|+|.
T Consensus        10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie   88 (91)
T cd06480          10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE   88 (91)
T ss_pred             CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence            3467889999999999999999999999 899999998764     67899999999999999999999996 9999999


Q ss_pred             Ee
Q 039719          151 VP  152 (186)
Q Consensus       151 lP  152 (186)
                      +|
T Consensus        89 aP   90 (91)
T cd06480          89 AP   90 (91)
T ss_pred             cC
Confidence            98

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=6.3e-16  Score=123.71  Aligned_cols=101  Identities=16%  Similarity=0.364  Sum_probs=90.8

Q ss_pred             cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCC
Q 039719           72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENG  145 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nG  145 (186)
                      ....++..++++|.|.+|+..|++++|+|++.+ +.|.|.|++.+.     +..++|.|+|.||.+||++.|++.+ .||
T Consensus        62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dG  140 (173)
T KOG3591|consen   62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDG  140 (173)
T ss_pred             ccccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCc
Confidence            356788999999999999999999999999999 799999998875     6889999999999999999999999 899


Q ss_pred             EEEEEEeccCcccCCCCeEEEeccCCCCC
Q 039719          146 ILRVTVPKLAEEKKRQPEVINIDEESCNS  174 (186)
Q Consensus       146 vL~I~lPK~~~~~~~~~k~I~I~~~~~~~  174 (186)
                      +|+|.+||.+.... ..+.|+|+..+..+
T Consensus       141 vLtI~ap~~~~~~~-~er~ipI~~~~~~~  168 (173)
T KOG3591|consen  141 VLTIEAPKPPPKQD-NERSIPIEQVGPSA  168 (173)
T ss_pred             eEEEEccCCCCcCc-cceEEeEeecCccc
Confidence            99999999986643 57899999876643

>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.5e-16  Score=129.64  Aligned_cols=100  Identities=44%  Similarity=0.671  Sum_probs=86.2

Q ss_pred             ccccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece--------------eeeeEEEEEEEcCCCCC
Q 039719           69 TLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--------------WTFGKFWRQFRMHMSTD  134 (186)
Q Consensus        69 ~~~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~--------------~~~~~f~R~~~LP~~vd  134 (186)
                      ..+.++++|.|.++.|.+.+++||+++++|+|+++++++|+|+|++..+              ..+|.|.|.+.||++++
T Consensus        81 ~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~  160 (196)
T KOG0710|consen   81 SEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVD  160 (196)
T ss_pred             ccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcccc
Confidence            3456778899999999999999999999999999995589999998764              37899999999999999


Q ss_pred             cCceEEEEeCCEEEEEEeccCcc-cCCCCeEEEec
Q 039719          135 LDHIKAHTENGILRVTVPKLAEE-KKRQPEVINID  168 (186)
Q Consensus       135 ~~~i~A~~~nGvL~I~lPK~~~~-~~~~~k~I~I~  168 (186)
                      .+.|+|.|+||||+|++||..+. +....+.|.|.
T Consensus       161 ~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~  195 (196)
T KOG0710|consen  161 VDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS  195 (196)
T ss_pred             HHHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence            99999999999999999999873 22345566554

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.53  E-value=1.1e-13  Score=93.48  Aligned_cols=76  Identities=42%  Similarity=0.775  Sum_probs=69.8

Q ss_pred             EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece----eeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719           77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE----WTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP  152 (186)
Q Consensus        77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~----~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP  152 (186)
                      |+++++.|.|++++||+.++++.|.+.+ +.|.|+|++...    ...+.|.+++.||..++++.++|.+.+|+|+|++|
T Consensus         1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~   79 (80)
T cd00298           1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP   79 (80)
T ss_pred             CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence            4688899999999999999999999999 899999997642    34689999999999999999999999999999999


Q ss_pred             c
Q 039719          153 K  153 (186)
Q Consensus       153 K  153 (186)
                      |
T Consensus        80 K   80 (80)
T cd00298          80 K   80 (80)
T ss_pred             C
Confidence            7

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.32  E-value=1.3e-11  Score=85.41  Aligned_cols=71  Identities=21%  Similarity=0.264  Sum_probs=65.2

Q ss_pred             EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccCc
Q 039719           77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAE  156 (186)
Q Consensus        77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~~  156 (186)
                      |+++++.+.|.+++||+++++++|++++ +.|.|++        ..|.+.+.||..||++..++++.+|.|.|+++|.++
T Consensus         1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~--------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~   71 (78)
T cd06469           1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF--------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP   71 (78)
T ss_pred             CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC--------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC
Confidence            4688999999999999999999999999 7899986        368899999999999999999999999999999754

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=99.07  E-value=1.3e-09  Score=75.05  Aligned_cols=76  Identities=21%  Similarity=0.241  Sum_probs=68.0

Q ss_pred             EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccCc
Q 039719           77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAE  156 (186)
Q Consensus        77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~~  156 (186)
                      ++++++.+.|.+.+||..+++++|.+.+ +.|+|++....   .+.|...+.|+..|+++...+++++|.|.|+++|..+
T Consensus         1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~---~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~   76 (84)
T cd06463           1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG---GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP   76 (84)
T ss_pred             CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC---CCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence            3578899999999999999999999999 79999987542   3578889999999999999999999999999999865

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=99.05  E-value=1.5e-09  Score=86.78  Aligned_cols=79  Identities=19%  Similarity=0.334  Sum_probs=64.0

Q ss_pred             ccceeEEEECCC-EEEEEEecCCCCccc-EEEEEEe-CcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEE
Q 039719           71 ALARADWMETPT-IHVITLDIPVMKKDN-VKIEVEE-NRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGIL  147 (186)
Q Consensus        71 ~~p~vdi~e~~~-~y~l~v~LPG~~~ed-i~V~v~~-~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL  147 (186)
                      ..+.+++.+.++ ...|.++|||+.+++ |+|.++. .+.|+|+  .     -+.+.+++.||.. +.+.+++.|+||||
T Consensus        90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~--~-----~~~~~krv~L~~~-~~e~~~~t~nNgIL  161 (177)
T PF05455_consen   90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIR--V-----GEKYLKRVALPWP-DPEITSATFNNGIL  161 (177)
T ss_pred             ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEe--c-----CCceEeeEecCCC-ccceeeEEEeCceE
Confidence            457789998887 699999999999888 9999985 1345554  3     2457789999976 78999999999999


Q ss_pred             EEEEeccCcc
Q 039719          148 RVTVPKLAEE  157 (186)
Q Consensus       148 ~I~lPK~~~~  157 (186)
                      +|++-+.++.
T Consensus       162 EIri~~~~~~  171 (177)
T PF05455_consen  162 EIRIRRTEES  171 (177)
T ss_pred             EEEEeecCCC
Confidence            9999887654

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=98.85  E-value=1.8e-08  Score=70.33  Aligned_cols=77  Identities=22%  Similarity=0.261  Sum_probs=68.3

Q ss_pred             EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccC
Q 039719           76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLA  155 (186)
Q Consensus        76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~  155 (186)
                      ||+++++...|.+.+||+.++++.|.+++ +.|.|++....   .+.|...+.|+..|+++..++.+.+|.|.|++.|..
T Consensus         1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~~---~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~   76 (84)
T cd06466           1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILPG---GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAE   76 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECCC---CCeEEEecccccccCchhcEEEEeCeEEEEEEEcCC
Confidence            67899999999999999999999999999 78999876431   246888899999999999999999999999999976


Q ss_pred             c
Q 039719          156 E  156 (186)
Q Consensus       156 ~  156 (186)
                      +
T Consensus        77 ~   77 (84)
T cd06466          77 P   77 (84)
T ss_pred             C
Confidence            4

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=98.55  E-value=2.8e-06  Score=57.84  Aligned_cols=77  Identities=19%  Similarity=0.314  Sum_probs=65.4

Q ss_pred             ceeEEEECCCEEEEEEecCCC--CcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEE
Q 039719           73 ARADWMETPTIHVITLDIPVM--KKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVT  150 (186)
Q Consensus        73 p~vdi~e~~~~y~l~v~LPG~--~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~  150 (186)
                      |.++|+++++...|.+.+++.  ++++++|.+.+ +.|.|+......   ..|.-.+.|...|+++.....+.++.|.|+
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~---~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~   76 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG---KEYLLEGELFGEIDPDESTWKVKDNKIEIT   76 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS---CEEEEEEEBSS-BECCCEEEEEETTEEEEE
T ss_pred             CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC---ceEEEEEEEeeeEcchhcEEEEECCEEEEE
Confidence            568999999999999999665  59999999999 799999764431   477778899999999999999999999999


Q ss_pred             Eec
Q 039719          151 VPK  153 (186)
Q Consensus       151 lPK  153 (186)
                      |.|
T Consensus        77 L~K   79 (79)
T PF04969_consen   77 LKK   79 (79)
T ss_dssp             EEB
T ss_pred             EEC
Confidence            987

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=98.23  E-value=1.8e-05  Score=58.26  Aligned_cols=78  Identities=14%  Similarity=0.201  Sum_probs=67.5

Q ss_pred             ceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719           73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP  152 (186)
Q Consensus        73 p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP  152 (186)
                      |+++++++.+...|.+.+||+  +++.|.++. +.|.|++.....  ...|.-.+.|...|+++..+.++.++.|.|++.
T Consensus         1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~~--~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~   75 (108)
T cd06465           1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGGG--GKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLR   75 (108)
T ss_pred             CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCCC--CeeEEEEeEhhhhccccccEEEecCCeEEEEEE
Confidence            478999999999999999998  889999999 789999854211  234777889999999999999999999999999


Q ss_pred             ccC
Q 039719          153 KLA  155 (186)
Q Consensus       153 K~~  155 (186)
                      |..
T Consensus        76 K~~   78 (108)
T cd06465          76 KKE   78 (108)
T ss_pred             ECC
Confidence            986

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=98.18  E-value=8.9e-06  Score=70.20  Aligned_cols=65  Identities=25%  Similarity=0.429  Sum_probs=57.7

Q ss_pred             CCEEEEEEecCCC-CcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEE--eCCEEEEEEe
Q 039719           81 PTIHVITLDIPVM-KKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHT--ENGILRVTVP  152 (186)
Q Consensus        81 ~~~y~l~v~LPG~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~--~nGvL~I~lP  152 (186)
                      .+.++|+++|||+ +..+|+|.|.+ ..|.|....      ..|.-.+.||..||.+..+|.|  +.++|+|++|
T Consensus       260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~------~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp  327 (328)
T PF08190_consen  260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPK------PKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP  327 (328)
T ss_pred             CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCC------CceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence            5789999999999 88999999999 789888442      2588889999999999999999  5699999998

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=98.13  E-value=2.3e-05  Score=55.03  Aligned_cols=76  Identities=18%  Similarity=0.251  Sum_probs=65.6

Q ss_pred             EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccC
Q 039719           76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLA  155 (186)
Q Consensus        76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~  155 (186)
                      ||+++++...|.+.++|+.++++.|++++ +.|.+++....   ...|.-.+.|...|+++..+.....+-+.|++.|.+
T Consensus         1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~---~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~   76 (84)
T cd06489           1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS---GNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTE   76 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC---CCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCC
Confidence            67889999999999999999999999999 78999876532   125777789999999998888888999999999975

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=97.92  E-value=0.0001  Score=51.37  Aligned_cols=75  Identities=23%  Similarity=0.330  Sum_probs=62.0

Q ss_pred             eEEEECCCEEEEEEecC-CCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeC-CEEEEEEe
Q 039719           75 ADWMETPTIHVITLDIP-VMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTEN-GILRVTVP  152 (186)
Q Consensus        75 vdi~e~~~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~n-GvL~I~lP  152 (186)
                      ++++++++...|.+.+| +++++|++|.+.+ +.|.|+...      +.+.-.-.|...||++...-++.+ ..|.|+++
T Consensus         1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~------~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~   73 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG------GEPLLDGELYAKVKVDESTWTLEDGKLLEITLE   73 (85)
T ss_pred             CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC------CCceEcCcccCceeEcCCEEEEeCCCEEEEEEE
Confidence            36789999999999997 7899999999999 789998642      122233468899999998888999 99999999


Q ss_pred             ccCc
Q 039719          153 KLAE  156 (186)
Q Consensus       153 K~~~  156 (186)
                      |.++
T Consensus        74 K~~~   77 (85)
T cd06467          74 KRNE   77 (85)
T ss_pred             ECCC
Confidence            9864

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=97.88  E-value=0.00019  Score=50.90  Aligned_cols=79  Identities=14%  Similarity=0.158  Sum_probs=67.4

Q ss_pred             eeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEec
Q 039719           74 RADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPK  153 (186)
Q Consensus        74 ~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK  153 (186)
                      +.||+++++...|.+.+.|+.++++.+.+++ +.|+++.....   ...|.-.+.|-..|+++..+-....+-+.|++.|
T Consensus         2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~---~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K   77 (87)
T cd06488           2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG---NKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRK   77 (87)
T ss_pred             CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC---CceEEEEeeccceEChhHcEEEecCcEEEEEEEe
Confidence            4799999999999999999999999999988 78888755332   1257788899999999998888899999999999


Q ss_pred             cCc
Q 039719          154 LAE  156 (186)
Q Consensus       154 ~~~  156 (186)
                      .++
T Consensus        78 ~~~   80 (87)
T cd06488          78 AEP   80 (87)
T ss_pred             CCC
Confidence            864

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=97.85  E-value=0.00031  Score=49.84  Aligned_cols=79  Identities=13%  Similarity=0.225  Sum_probs=65.3

Q ss_pred             eeEEEECCCEEEEEEecCCCCc---ccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEE-cCCCCCcCceEEEEeCCEEEE
Q 039719           74 RADWMETPTIHVITLDIPVMKK---DNVKIEVEENRVLRVSGERKTEWTFGKFWRQFR-MHMSTDLDHIKAHTENGILRV  149 (186)
Q Consensus        74 ~vdi~e~~~~y~l~v~LPG~~~---edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~-LP~~vd~~~i~A~~~nGvL~I  149 (186)
                      .++|+++++...|.+.+|+..+   ++++|++.. +.|.|++....   -..|.-.+. |-..|+++..+.....+-+.|
T Consensus         3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~~---~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i   78 (92)
T cd06468           3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDLN---GKNYRFTINRLLKKIDPEKSSFKVKTDRIVI   78 (92)
T ss_pred             eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECCC---CcEEEEEehHhhCccCccccEEEEeCCEEEE
Confidence            4789999999999999999977   999999999 78999875322   124544554 889999999999999999999


Q ss_pred             EEeccCc
Q 039719          150 TVPKLAE  156 (186)
Q Consensus       150 ~lPK~~~  156 (186)
                      ++.|.++
T Consensus        79 ~L~K~~~   85 (92)
T cd06468          79 TLAKKKE   85 (92)
T ss_pred             EEEeCCC
Confidence            9999864

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=97.80  E-value=0.00029  Score=49.62  Aligned_cols=75  Identities=16%  Similarity=0.224  Sum_probs=59.9

Q ss_pred             eEEEECCCEEEEEEecC-CCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCC-EEEEEEe
Q 039719           75 ADWMETPTIHVITLDIP-VMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENG-ILRVTVP  152 (186)
Q Consensus        75 vdi~e~~~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nG-vL~I~lP  152 (186)
                      ++++++.+...|.+.+| |++++|++|+++. +.|.+......     .+ -.-.|...|+++...-..++| .|.|++.
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~~~-----~~-~~g~L~~~I~~d~Stw~i~~~~~l~i~L~   73 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKDQA-----PL-LEGKLYSSIDHESSTWIIKENKSLEVSLI   73 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCCCC-----eE-EeCcccCcccccCcEEEEeCCCEEEEEEE
Confidence            36789999999999996 9999999999999 78888753111     12 234788999999977777777 6999999


Q ss_pred             ccCc
Q 039719          153 KLAE  156 (186)
Q Consensus       153 K~~~  156 (186)
                      |.++
T Consensus        74 K~~~   77 (85)
T cd06493          74 KKDE   77 (85)
T ss_pred             ECCC
Confidence            9864

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=97.46  E-value=0.0024  Score=47.23  Aligned_cols=79  Identities=16%  Similarity=0.190  Sum_probs=64.1

Q ss_pred             cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719           72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV  151 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l  151 (186)
                      .|.+++.++.+...|++.+|+  .+|++|.+++ +.|.++|....   -..|.-.+.|-..|+++..+-+...--+.|.+
T Consensus         1 ~p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~~---g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L   74 (106)
T cd00237           1 PAKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNGD---NVKIYNEIELYDRVDPNDSKHKRTDRSILCCL   74 (106)
T ss_pred             CCcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECCC---CcEEEEEEEeecccCcccCeEEeCCceEEEEE
Confidence            367999999999999999999  5799999999 78999985422   12366678888999999877777777888999


Q ss_pred             eccCc
Q 039719          152 PKLAE  156 (186)
Q Consensus       152 PK~~~  156 (186)
                      .|.++
T Consensus        75 ~K~~~   79 (106)
T cd00237          75 RKGKE   79 (106)
T ss_pred             EeCCC
Confidence            99864

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=97.41  E-value=0.0021  Score=46.47  Aligned_cols=77  Identities=18%  Similarity=0.253  Sum_probs=62.1

Q ss_pred             cceeEEEECCCEEEEEEecC-CCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCE-EEE
Q 039719           72 LARADWMETPTIHVITLDIP-VMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGI-LRV  149 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGv-L~I  149 (186)
                      ...++++.+.+...|.+.+| |+++.|+.|.+.. +.|.|..... ..-.|      .|...|+++...-.+++|- |.|
T Consensus         5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g~-~~l~G------~L~~~I~~destWtled~k~l~I   76 (93)
T cd06494           5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKGQ-EVLKG------KLFDSVVADECTWTLEDRKLIRI   76 (93)
T ss_pred             CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECCE-EEEcC------cccCccCcccCEEEEECCcEEEE
Confidence            45789999999999999998 8999999999999 7888874211 01111      6888999999888888875 899


Q ss_pred             EEeccCc
Q 039719          150 TVPKLAE  156 (186)
Q Consensus       150 ~lPK~~~  156 (186)
                      ++.|...
T Consensus        77 ~L~K~~~   83 (93)
T cd06494          77 VLTKSNR   83 (93)
T ss_pred             EEEeCCC
Confidence            9999753

Little is known about the function of the proteins in this subgroup.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.89  E-value=0.0061  Score=53.75  Aligned_cols=81  Identities=19%  Similarity=0.176  Sum_probs=68.8

Q ss_pred             cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719           72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV  151 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l  151 (186)
                      ..+.||+++++...|.+.+.|+.++++.|++.+ +.|.|+.....   ...|...+.|-..|+++..+.+..-.-+.|++
T Consensus       156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~---~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l  231 (356)
T PLN03088        156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG---EDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRL  231 (356)
T ss_pred             ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC---CcceeecccccccccccccEEEEecceEEEEE
Confidence            367899999999999999999999999999999 78888865432   12566668899999999988888888999999


Q ss_pred             eccCc
Q 039719          152 PKLAE  156 (186)
Q Consensus       152 PK~~~  156 (186)
                      .|.+.
T Consensus       232 ~K~~~  236 (356)
T PLN03088        232 AKAEP  236 (356)
T ss_pred             ecCCC
Confidence            98764

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=96.61  E-value=0.009  Score=48.23  Aligned_cols=81  Identities=20%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719           72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV  151 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l  151 (186)
                      .++.|+++++...+|.+-.+|+.++|+.|.+.+ +.|.+..+...   ...|.-...|-..|.+++.+-+.----+.|++
T Consensus         3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~---g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L   78 (196)
T KOG1309|consen    3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPS---GSEYNLQLKLYHEIIPEKSSFKVFSTKVEITL   78 (196)
T ss_pred             cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCC---chhhhhhHHhcccccccceeeEeeeeeEEEEe
Confidence            457899999999999999999999999999998 78888866542   12455555677889898877666677899999


Q ss_pred             eccCc
Q 039719          152 PKLAE  156 (186)
Q Consensus       152 PK~~~  156 (186)
                      +|.+.
T Consensus        79 ~K~~~   83 (196)
T KOG1309|consen   79 AKAEI   83 (196)
T ss_pred             ccccc
Confidence            99543

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=96.07  E-value=0.12  Score=36.46  Aligned_cols=76  Identities=16%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             eEEEECCCEEEEEEecCC--CCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEe--CCEEEEE
Q 039719           75 ADWMETPTIHVITLDIPV--MKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTE--NGILRVT  150 (186)
Q Consensus        75 vdi~e~~~~y~l~v~LPG--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~--nGvL~I~  150 (186)
                      .||+.+++...|.+-..+  ..++++.+.... +.|.|+-....    ..|...+.|-..|+++. +.++.  -|-++|+
T Consensus         1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~~----~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~   74 (87)
T cd06490           1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILGD----KSYLLHLDLSNEVQWPC-EVRISTETGKIELV   74 (87)
T ss_pred             CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECCC----ceEEEeeeccccCCCCc-EEEEcccCceEEEE
Confidence            489999999999999885  455555566566 57888754321    24677788988998775 55554  7899999


Q ss_pred             EeccCc
Q 039719          151 VPKLAE  156 (186)
Q Consensus       151 lPK~~~  156 (186)
                      +.|.++
T Consensus        75 L~K~e~   80 (87)
T cd06490          75 LKKKEP   80 (87)
T ss_pred             EEcCCC
Confidence            999764

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=95.88  E-value=0.11  Score=36.76  Aligned_cols=73  Identities=14%  Similarity=0.255  Sum_probs=55.6

Q ss_pred             EEECCCEEEEEEecC-C--CCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCC-EEEEEEe
Q 039719           77 WMETPTIHVITLDIP-V--MKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENG-ILRVTVP  152 (186)
Q Consensus        77 i~e~~~~y~l~v~LP-G--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nG-vL~I~lP  152 (186)
                      +..+.+...|.+.+| |  .+..|++|.++. +.|.|.-+..      ..--.=.|...|+++...-.+++| .|.|++-
T Consensus         3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~------~~~i~G~L~~~V~~des~Wtled~~~l~i~L~   75 (87)
T cd06492           3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ------PPIIDGELYNEVKVEESSWLIEDGKVVTVNLE   75 (87)
T ss_pred             cEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC------ceEEeCcccCcccccccEEEEeCCCEEEEEEE
Confidence            557778888999996 3  899999999999 7888864321      111223678899998888888886 8999999


Q ss_pred             ccCc
Q 039719          153 KLAE  156 (186)
Q Consensus       153 K~~~  156 (186)
                      |...
T Consensus        76 K~~~   79 (87)
T cd06492          76 KINK   79 (87)
T ss_pred             ECCC
Confidence            9753

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=95.40  E-value=0.31  Score=35.72  Aligned_cols=77  Identities=16%  Similarity=0.217  Sum_probs=59.8

Q ss_pred             cceeEEEECCCEEEEEEecC-C-CCcccEEEEEEeCcEEEEEEEE--ec-eeeeeEEEEEEEcCCCCCcCceEEEEeCC-
Q 039719           72 LARADWMETPTIHVITLDIP-V-MKKDNVKIEVEENRVLRVSGER--KT-EWTFGKFWRQFRMHMSTDLDHIKAHTENG-  145 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LP-G-~~~edi~V~v~~~~~L~I~g~~--~~-~~~~~~f~R~~~LP~~vd~~~i~A~~~nG-  145 (186)
                      ...+.+..+.+...|.+.|| | .+..+|.|.+.. ..|.|.-..  .. ..-.|      .|+..|+.+.-.-.++|| 
T Consensus         4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~~~~~~i~G------~L~~~V~~des~Wtled~~   76 (102)
T cd06495           4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGGGEKVLMEG------EFTHKINTENSLWSLEPGK   76 (102)
T ss_pred             CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCCCCceEEeC------cccCcccCccceEEEeCCC
Confidence            45688999999999999999 6 468899999999 788887542  11 11122      588899999888888886 


Q ss_pred             EEEEEEeccC
Q 039719          146 ILRVTVPKLA  155 (186)
Q Consensus       146 vL~I~lPK~~  155 (186)
                      .|.|++-|..
T Consensus        77 ~l~I~L~K~~   86 (102)
T cd06495          77 CVLLSLSKCS   86 (102)
T ss_pred             EEEEEEEECC
Confidence            4899999974

Little is known about the function of the proteins in this subgroup.

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=88.29  E-value=0.38  Score=41.64  Aligned_cols=111  Identities=17%  Similarity=0.098  Sum_probs=76.3

Q ss_pred             cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719           72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV  151 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l  151 (186)
                      ...+|+.+|.....|-+.-|-+..++|.+.+++ |.|.|+-+....  ..-+.-...|-..|+++...-+.---++.|++
T Consensus       176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~--~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l  252 (368)
T COG5091         176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRL--RLWNDITISLYKEVYPDIRSIKSFSKRVEVHL  252 (368)
T ss_pred             eeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeecccc--chHHHhhhhhhhhcCcchhhhhhcchhheehh
Confidence            346777889999999999999999999999999 899999765432  11223446777889888877665447888888


Q ss_pred             eccCccc------CCCCeEEEeccCCCCCCcccccccccC
Q 039719          152 PKLAEEK------KRQPEVINIDEESCNSSNEDIKATKSQ  185 (186)
Q Consensus       152 PK~~~~~------~~~~k~I~I~~~~~~~~~~~~~~~k~~  185 (186)
                      .|.+..+      .....-..+-.++.+++.++.+..|+|
T Consensus       253 ~KV~~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~  292 (368)
T COG5091         253 RKVEMVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQ  292 (368)
T ss_pred             hhhhhhhhcccccCccccccccccccccccccCCcccccc
Confidence            8876431      001122334455666666666666654

>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]

Probab=80.46  E-value=16  Score=29.55  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=60.4

Q ss_pred             cccceeEEEECCCEEEEEEecC-CC-CcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEE
Q 039719           70 LALARADWMETPTIHVITLDIP-VM-KKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGIL  147 (186)
Q Consensus        70 ~~~p~vdi~e~~~~y~l~v~LP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL  147 (186)
                      ...+.+.|..|=....|.+.+| |+ +..+|.|.+.. ..|.|.-+.....-.|      .|...|+.+...-.+++|.+
T Consensus        16 ~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~~ildG------~L~~~vk~des~WtiEd~k~   88 (179)
T KOG2265|consen   16 ADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQPPILDG------ELSHSVKVDESTWTIEDGKM   88 (179)
T ss_pred             ccccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCCceecC------ccccccccccceEEecCCEE
Confidence            3456788888888899998887 88 89999999999 7787775433222223      46677888888888999988


Q ss_pred             EEEEeccCc
Q 039719          148 RVTVPKLAE  156 (186)
Q Consensus       148 ~I~lPK~~~  156 (186)
                      .|++-++..
T Consensus        89 i~i~l~K~~   97 (179)
T KOG2265|consen   89 IVILLKKSN   97 (179)
T ss_pred             EEEEeeccc
Confidence            888777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
1gme_A	151	Crystal Structure And Assembly Of An Eukaryotic Sma		1e-13
2byu_A	101	Negative Stain Em Reconstruction Of M.Tuberculosis		6e-11
2h50_A	93	Multiple Distinct Assemblies Reveal Conformational		2e-10
3gla_A	100	Crystal Structure Of The Hspa From Xanthomonas Axon		9e-06
3gt6_A	103	Crystal Structure Of The Hspa From Xanthomonas Axon		1e-05

>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat Shock Protein Length = 151

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 75/145 (51%), Gaps = 13/145 (8%)
Query: 35  QSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMK 94
           +S  FD    +  + F         I+ G       A AR DW ETP  HV   D+P +K
Sbjct: 6   RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 65
Query: 95  KDNVKIEVEENRVLRVSGER------------KTEWTFGKFWRQFRMHMSTDLDHIKAHT 142
           K+ VK+EVE+  VL VSGER            + E + GKF R+FR+     ++ +KA  
Sbjct: 66  KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL 125
Query: 143 ENGILRVTVPKLAEEKKRQPEVINI 167
           ENG+L VTVPK AE KK + + I I
Sbjct: 126 ENGVLTVTVPK-AEVKKPEVKAIQI 149

>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer Length = 101

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)
Query: 73  ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGER------------KTEWTF 120
           AR DW ETP  HV   D+P +KK+ VK+EVE+  VL VSGER            + E + 
Sbjct: 2   ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSS 61
Query: 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLA 155
           GKF R+FR+     ++ +KA  ENG+L VTVPK A
Sbjct: 62  GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAA 96

>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational Flexibility In The Small Heat Shock Protein Hsp26 Length = 93

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 12/93 (12%)
Query: 73  ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGER------------KTEWTF 120
           AR DW ETP  HV   D+P +KK+ VK+EVE+  VL VSGER            + E + 
Sbjct: 1   ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSS 60
Query: 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPK 153
           GKF R+FR+     ++ +KA  ENG+L VTVPK
Sbjct: 61  GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93

>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 100

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 72  LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWT------------ 119
           + R D  E     V+  D+P +    +++++++  +L + GERK+E +            
Sbjct: 4   VPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERR 62
Query: 120 FGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPK 153
           +G F R+F +  S D D I A   NG+L + +PK
Sbjct: 63  YGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 96

>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 103

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 72  LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWT------------ 119
           + R D  E     V+  D+P +    +++++++  +L + GERK+E +            
Sbjct: 7   VPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERR 65
Query: 120 FGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPK 153
           +G F R+F +  S D D I A   NG+L + +PK
Sbjct: 66  YGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	8e-35
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	5e-27
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	4e-26
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	1e-25
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	9e-14
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	4e-13
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	2e-12
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	8e-12
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	2e-11
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	1e-07
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	2e-05

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151

 Score =  118 bits (299), Expect = 8e-35
 Identities = 55/145 (37%), Positives = 71/145 (48%), Gaps = 15/145 (10%)

Query: 36  SPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKK 95
           S  FD    +  + F         I+ G       A AR DW ETP  HV   D+P +KK
Sbjct: 7   SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 66

Query: 96  DNVKIEVEENRVLRVSGERK------------TEWTFGKFWRQFRMHMSTDLDHIKAHTE 143
           + VK+EVE+  VL VSGER              E + GKF R+FR+     ++ +KA  E
Sbjct: 67  EEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLE 126

Query: 144 NGILRVTVPKLAEEKKRQPEVINID 168
           NG+L VTVPK   +K   PEV  I 
Sbjct: 127 NGVLTVTVPKAEVKK---PEVKAIQ 148

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100

 Score = 97.5 bits (244), Expect = 5e-27
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 13/95 (13%)

Query: 74  RADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------WT-----FG 121
           R D  E     V+  D+P +    +++++++  +L + GERK+E       ++     +G
Sbjct: 6   RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 64

Query: 122 KFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAE 156
            F R+F +  S D D I A   NG+L + +PK   
Sbjct: 65  SFHRRFALPDSADADGITAAGRNGVLEIRIPKRPA 99

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161

 Score = 97.1 bits (242), Expect = 4e-26
 Identities = 18/146 (12%), Positives = 43/146 (29%), Gaps = 17/146 (11%)

Query: 36  SPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKK 95
           +        +   +                            +E      +   +P + K
Sbjct: 20  ATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGVNK 79

Query: 96  DNVKIEVEENRVLRVSGERKTEWT-------------FGKFWRQFRMHMSTDLDHIKAHT 142
           +++ +    +  L +  +R                    + +R  ++  +   ++  A  
Sbjct: 80  EDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF 138

Query: 143 ENGILRVTVPKLAEEKKRQPEVINID 168
           ENG+L V +PK     K+    INI+
Sbjct: 139 ENGVLSVILPKAESSIKKG---INIE 161

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123

 Score = 94.6 bits (236), Expect = 1e-25
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 9/102 (8%)

Query: 68  QTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKT--------EWT 119
             L     D  E     V+  D+    K+ +K  V     L +  ER+            
Sbjct: 20  YELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQR 79

Query: 120 FGKFWRQFRMHMSTDLD-HIKAHTENGILRVTVPKLAEEKKR 160
                +  R+  +   D  I    ENG+L + +P       +
Sbjct: 80  PKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101

 Score = 63.3 bits (154), Expect = 9e-14
 Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 79  ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMST 133
             P    + LD+     + + ++V  +  + V    +       +   +F R++R+    
Sbjct: 8   TDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHARHEERPDEHGFIAREFHRRYRLPPGV 66

Query: 134 DLDHIKAH-TENGILRVTVPK-LAEEKKRQPEVI 165
           D   + +  +  G+L +      A+     P   
Sbjct: 67  DPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90

 Score = 61.3 bits (149), Expect = 4e-13
 Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 85  VITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIK 139
            + LD+     + +K++V  + V+ V G+ +       +   +F R++R+    D   I 
Sbjct: 9   SVNLDVKHFSPEELKVKVLGD-VIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTIT 67

Query: 140 AH-TENGILRVTVPKLAEEKKRQ 161
           +  + +G+L V  P+       +
Sbjct: 68  SSMSSDGVLTVNGPRKQVSGPER 90

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 79  ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMST 133
                 VI LD+     +++ ++V+E+ V  + G+         +   +F R++R+  + 
Sbjct: 9   SDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGKHNERQDDHGYISREFHRRYRLPSNV 67

Query: 134 DLDHIKAH-TENGILRVTVPKLAEEKKRQPEVINI 167
           D   +    + +G+L  + PK+            I
Sbjct: 68  DQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAI 102

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85

 Score = 57.7 bits (140), Expect = 8e-12
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 79  ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMST 133
            T     ++LD+     D + ++ ++  V  ++G+         +    F R++ +    
Sbjct: 4   HTADRWRVSLDVNHFAPDELTVKTKDGVVE-ITGKHAARQDEHGYISRCFTRKYTLPPGV 62

Query: 134 DLDHIKAH-TENGILRVTVPK 153
           D   + +  +  G L V  P 
Sbjct: 63  DPTQVSSSLSPEGTLTVEAPM 83

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 18/148 (12%)

Query: 29  ALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITL 88
            L      P    + P        L                     ++         + L
Sbjct: 31  HLLESDLFPTSTSLSPFYLRPPSFLR-----------APSWFDTGLSEMRLEKDRFSVNL 79

Query: 89  DIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAH-T 142
           D+     + +K++V  +  + V G+ +       +   +F R++R+    D   I +  +
Sbjct: 80  DVKHFSPEELKVKVLGDV-IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLS 138

Query: 143 ENGILRVTVPKLAEEKKRQPEVINIDEE 170
            +G+L V  P+       +   I  +E+
Sbjct: 139 SDGVLTVNGPRKQVSGPERTIPITREEK 166

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 76  DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--------WTFGKFWRQF 127
               +  IH+     P     +VK+  + N+V  V G    E            +F++ F
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVY-VHGVTGKEEKTENASHSEHREFYKAF 286

Query: 128 RMHMSTDLDHIKAHTENGILRVTVPKL 154
                 D    +A   +G++ V  P  
Sbjct: 287 VTPEVVDASKTQAEIVDGLMVVEAPLF 313

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 20  LTNMASQANALTPYTQ--SPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADW 77
           + NM     +L P+T   + F  +M  M+    R           G       A      
Sbjct: 50  IVNMHRNLFSLEPFTAMDNAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGK- 108

Query: 78  METPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE----WTFGKFWRQFRMHMST 133
            +      +  ++   K + + I+ ++N+ L V  ++              R   +  S 
Sbjct: 109 -DGRLHFKVYFNVKNFKAEEITIKADKNK-LVVRAQKSVACGDAAMSESVGRSIPLPPSV 166

Query: 134 DLDHIKAH-TENGILRVTVPKLAEEKKRQP 162
           D +HI+A  T + +L +  P      K   
Sbjct: 167 DRNHIQATITTDDVLVIEAPVNEPNYKAIK 196

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	99.95
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	99.93
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	99.92
4fei_A	102	Heat shock protein-related protein; stress respons	99.92
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	99.92
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	99.92
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	99.91
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	99.9
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	99.89
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	99.87
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.84
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.76
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.11
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.11
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	98.43
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	98.41
3igf_A	374	ALL4481 protein; two-domained protein consisting o	98.32
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	97.98
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	97.92
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	97.8
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	97.7
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	97.62
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	97.61
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	97.55
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	97.55
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	97.43
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	97.26

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=99.95  E-value=2.7e-27  Score=184.24  Aligned_cols=100  Identities=47%  Similarity=0.721  Sum_probs=87.3

Q ss_pred             ccccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece------------eeeeEEEEEEEcCCCCCcC
Q 039719           69 TLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE------------WTFGKFWRQFRMHMSTDLD  136 (186)
Q Consensus        69 ~~~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~------------~~~~~f~R~~~LP~~vd~~  136 (186)
                      ..+.|++||+|++++|+|.++|||++++||+|++++++.|+|+|++..+            +.+|+|.|+|.||.+||.+
T Consensus        40 ~~~~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~  119 (151)
T 1gme_A           40 AFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVE  119 (151)
T ss_dssp             HHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGG
T ss_pred             cccCCceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCcccc
Confidence            3467899999999999999999999999999999643799999987653            3579999999999999999


Q ss_pred             ceEEEEeCCEEEEEEeccCcccCCCCeEEEecc
Q 039719          137 HIKAHTENGILRVTVPKLAEEKKRQPEVINIDE  169 (186)
Q Consensus       137 ~i~A~~~nGvL~I~lPK~~~~~~~~~k~I~I~~  169 (186)
                      +|+|+|+||+|+|++||.++.+ .+.++|+|++
T Consensus       120 ~i~A~~~nGvL~I~lPK~~~~~-~~~~~I~I~~  151 (151)
T 1gme_A          120 EVKAGLENGVLTVTVPKAEVKK-PEVKAIQISG  151 (151)
T ss_dssp             GCEEEEETTEEEEEEECCCCCT-TCCCCCCCCC
T ss_pred             ceEEEEECCEEEEEEEccCcCC-CCCeEeeeCC
Confidence            9999999999999999987653 3467888864

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=99.93  E-value=7e-26  Score=177.62  Aligned_cols=93  Identities=18%  Similarity=0.291  Sum_probs=84.7

Q ss_pred             cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece------------e-eeeEEEEEEEcCCCCCcCce
Q 039719           72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE------------W-TFGKFWRQFRMHMSTDLDHI  138 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~------------~-~~~~f~R~~~LP~~vd~~~i  138 (186)
                      .+++||+|++++|+|.++|||++++||+|++++ +.|+|+|+++..            + .+|+|.|+|.||.+||.++|
T Consensus        56 ~~pvdi~e~~~~~~v~~dlPG~~~edi~V~~~~-~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i  134 (161)
T 4eld_A           56 FMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENA  134 (161)
T ss_dssp             CCCEEEEECSSEEEEEEECTTCCGGGEEEEEET-TEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGC
T ss_pred             ccceeEEEeCCEEEEEEECCCCChHhEEEEEEC-CEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccE
Confidence            445999999999999999999999999999999 899999998762            3 67899999999999999999


Q ss_pred             EEEEeCCEEEEEEeccCcccCCCCeEEEec
Q 039719          139 KAHTENGILRVTVPKLAEEKKRQPEVINID  168 (186)
Q Consensus       139 ~A~~~nGvL~I~lPK~~~~~~~~~k~I~I~  168 (186)
                      +|+|+||+|+|++||.+.+   ++|+|+|+
T Consensus       135 ~A~~~nGvL~I~lpK~~~~---~~r~I~Ie  161 (161)
T 4eld_A          135 SAKFENGVLSVILPKAESS---IKKGINIE  161 (161)
T ss_dssp             EEEEETTEEEEEEEBCGGG---SCCCCCCC
T ss_pred             EEEEECCEEEEEEEcCCCC---CCcEeecC
Confidence            9999999999999998765   37888885

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=99.92  E-value=5.8e-25  Score=159.26  Aligned_cols=86  Identities=30%  Similarity=0.555  Sum_probs=78.8

Q ss_pred             cccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece------------eeeeEEEEEEEcCCCCCcCc
Q 039719           70 LALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE------------WTFGKFWRQFRMHMSTDLDH  137 (186)
Q Consensus        70 ~~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~------------~~~~~f~R~~~LP~~vd~~~  137 (186)
                      .+.|++||+|++++|+|.++|||++++||+|++++ +.|+|+|++..+            +.+|+|.|+|.||.+||.++
T Consensus         2 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~   80 (100)
T 3gla_A            2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADG   80 (100)
T ss_dssp             CSCCCEEEEECSSEEEEEEECTTSCGGGCEEEEET-TEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTS
T ss_pred             CccCcEEEEECCCEEEEEEECCCCCHHHEEEEEEC-CEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHH
Confidence            36789999999999999999999999999999998 899999998753            36789999999999999999


Q ss_pred             eEEEEeCCEEEEEEeccCc
Q 039719          138 IKAHTENGILRVTVPKLAE  156 (186)
Q Consensus       138 i~A~~~nGvL~I~lPK~~~  156 (186)
                      |+|+|+||+|+|++||.++
T Consensus        81 i~A~~~~GvL~I~~pK~~~   99 (100)
T 3gla_A           81 ITAAGRNGVLEIRIPKRPA   99 (100)
T ss_dssp             CEEEEETTEEEEEEEBC--
T ss_pred             eEEEEeCCEEEEEEecCCC
Confidence            9999999999999999864

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=99.92  E-value=1.1e-24  Score=158.88  Aligned_cols=87  Identities=25%  Similarity=0.323  Sum_probs=81.5

Q ss_pred             cccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-------eeeeEEEEEEEcCCCCCcCceEEEE
Q 039719           70 LALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------WTFGKFWRQFRMHMSTDLDHIKAHT  142 (186)
Q Consensus        70 ~~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-------~~~~~f~R~~~LP~~vd~~~i~A~~  142 (186)
                      .+.|++||+|++++|+|.++|||++++||+|++++ +.|+|+|+++.+       +.+|+|.|+|.||.+||.+.|+|+|
T Consensus         4 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~-~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~   82 (102)
T 4fei_A            4 PWTPAADWRDAGTHLDLLLDVPGVDAGTLALAEDG-GQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASL   82 (102)
T ss_dssp             ECCCCEEEEEETTEEEEEEECTTCCGGGCEEEEET-TEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEE
T ss_pred             cccCcEEEEEcCCEEEEEEECCCCchHhEEEEEEC-CEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEE
Confidence            46799999999999999999999999999999999 899999998654       4889999999999999999999999


Q ss_pred             eCCEEEEEEeccCcc
Q 039719          143 ENGILRVTVPKLAEE  157 (186)
Q Consensus       143 ~nGvL~I~lPK~~~~  157 (186)
                      +||+|+|++||.++.
T Consensus        83 ~~GvL~I~lpK~~~~   97 (102)
T 4fei_A           83 AGGVLTVRFEKLRPT   97 (102)
T ss_dssp             ETTEEEEEEEBSSCC
T ss_pred             ECCEEEEEEEccCcc
Confidence            999999999998765

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=99.92  E-value=1.3e-24  Score=159.70  Aligned_cols=96  Identities=17%  Similarity=0.367  Sum_probs=85.9

Q ss_pred             ceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCCE
Q 039719           73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENGI  146 (186)
Q Consensus        73 p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nGv  146 (186)
                      ...||+|++++|.|.++||||+++||+|++++ +.|+|+|++...     |..+.|.|+|.||.+||.++|+|+| +||+
T Consensus         3 g~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~Gv   81 (106)
T 3l1e_A            3 GISEVRSDRDKFVIFLDVKHFSPEDLTVKVQE-DFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGM   81 (106)
T ss_dssp             CSEEEEECSSEEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSE
T ss_pred             CceEEEEcCCEEEEEEECCCCChHHEEEEEEC-CEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCE
Confidence            35899999999999999999999999999999 899999997643     6778899999999999999999999 8999


Q ss_pred             EEEEEeccCccc--CCCCeEEEecc
Q 039719          147 LRVTVPKLAEEK--KRQPEVINIDE  169 (186)
Q Consensus       147 L~I~lPK~~~~~--~~~~k~I~I~~  169 (186)
                      |+|++||.++..  ..++|+|+|+.
T Consensus        82 L~I~~PK~~~~~~~~~~~r~I~I~r  106 (106)
T 3l1e_A           82 LTFSGPKIPSGVDAGHSERAIPVSR  106 (106)
T ss_dssp             EEEEEEBCCCCTTTTSSSCCCCCCC
T ss_pred             EEEEEEccCcccccCCCCeEeeecC
Confidence            999999998753  23688998863

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=99.92  E-value=5.4e-25  Score=165.42  Aligned_cols=106  Identities=20%  Similarity=0.227  Sum_probs=81.4

Q ss_pred             CcccccCCcccchhhhcccCcccccCCCccccccccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEec
Q 039719           37 PFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKT  116 (186)
Q Consensus        37 ~l~d~~~~~f~d~F~~~~~~~~~~~~~~~~~~~~~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~  116 (186)
                      .++++|.++|++.++.+.              ..+.|++||+|++++|.|.++|||++++||+|++++++.|+|+|++..
T Consensus         3 ~~~~em~~~~~~~~~~~~--------------~~~~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~   68 (123)
T 3aab_A            3 YLGKELQKRSEELSRGFY--------------ELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREI   68 (123)
T ss_dssp             -----------CCCHHHH--------------HHHCSCEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCC
T ss_pred             hHHHHHHHHHHHHhhhcc--------------ccCCCcEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEec
Confidence            355666665655554332              124588999999999999999999999999999998469999999765


Q ss_pred             e---------eeeeEEEEEEEcCCCCCcCce-EEEEeCCEEEEEEeccCcc
Q 039719          117 E---------WTFGKFWRQFRMHMSTDLDHI-KAHTENGILRVTVPKLAEE  157 (186)
Q Consensus       117 ~---------~~~~~f~R~~~LP~~vd~~~i-~A~~~nGvL~I~lPK~~~~  157 (186)
                      +         +.+ +|.|+|.||.+||.++| +|+|+||+|+|++||.+..
T Consensus        69 ~~~~~~~~~Er~~-~f~R~~~LP~~vd~~~i~~A~~~~GvL~I~lPK~~~~  118 (123)
T 3aab_A           69 TEPGVKYLTQRPK-YVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTS  118 (123)
T ss_dssp             CCCSCEEEECSCS-EEEEEEECSSEECTTCCCEEEEETTEEEEEEEGGGEE
T ss_pred             cCCCeEEEEEEeE-EEEEEEECCCCcCcchhCeeEEcCCEEEEEEEcCCCC
Confidence            3         234 89999999999999999 9999999999999998654

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=99.91  E-value=1.9e-24  Score=172.09  Aligned_cols=99  Identities=19%  Similarity=0.318  Sum_probs=72.0

Q ss_pred             ceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCCE
Q 039719           73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENGI  146 (186)
Q Consensus        73 p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nGv  146 (186)
                      ..+||+|++++|.|.++|||++++||+|++++ +.|+|+|+++.+     +..+.|.|+|.||.+||.++|+|+| +||+
T Consensus        64 ~~~dv~e~~d~~~v~~dlPG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGv  142 (175)
T 2klr_A           64 GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGV  142 (175)
T ss_dssp             -----CCCCSEEEEEECCSSCCGGGEEEEEET-TEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSC
T ss_pred             CceEEEEcCCeEEEEEECCCCChHHEEEEEEC-CEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCE
Confidence            35899999999999999999999999999999 899999998653     5667899999999999999999999 7999


Q ss_pred             EEEEEeccCcccCCCCeEEEeccCCCCC
Q 039719          147 LRVTVPKLAEEKKRQPEVINIDEESCNS  174 (186)
Q Consensus       147 L~I~lPK~~~~~~~~~k~I~I~~~~~~~  174 (186)
                      |+|++||.+..+  ..|+|+|+.++..+
T Consensus       143 L~I~lPK~~~~~--~~r~I~I~~~~~~~  168 (175)
T 2klr_A          143 LTVNGPRKQVSG--PERTIPITREEKPA  168 (175)
T ss_dssp             EEEEEECC--------------------
T ss_pred             EEEEEECCCCCC--CCeEEEEecCCccc
Confidence            999999986542  36899999765533

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=99.90  E-value=8.1e-24  Score=154.20  Aligned_cols=90  Identities=13%  Similarity=0.245  Sum_probs=79.5

Q ss_pred             eeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCCEE
Q 039719           74 RADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENGIL  147 (186)
Q Consensus        74 ~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL  147 (186)
                      .+||+|++++|.|.++|||++++||+|++++ +.|+|+|++...     |..+.|.|+|.||.+||.++|+|+| +||+|
T Consensus         3 ~vdi~e~~~~~~v~~dlPG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL   81 (101)
T 2wj5_A            3 MAQVPTDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVL   81 (101)
T ss_dssp             CCCCCCCSSCEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEE
T ss_pred             cEEEEEeCCEEEEEEECCCCcHHHeEEEEEC-CEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEE
Confidence            4899999999999999999999999999998 899999998753     5667899999999999999999999 89999


Q ss_pred             EEEEeccCcccCCCCeEEEe
Q 039719          148 RVTVPKLAEEKKRQPEVINI  167 (186)
Q Consensus       148 ~I~lPK~~~~~~~~~k~I~I  167 (186)
                      +|++||.+..+   ++.+.|
T Consensus        82 ~I~lPK~~~~~---~~~~~i   98 (101)
T 2wj5_A           82 SIQATPASAQA---SLPSPP   98 (101)
T ss_dssp             EEEECBCCCCC---SSCC--
T ss_pred             EEEEECCCcCC---CCCCcc
Confidence            99999987664   444444

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=99.89  E-value=4e-23  Score=146.09  Aligned_cols=77  Identities=17%  Similarity=0.332  Sum_probs=70.7

Q ss_pred             EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEEe-CCEEEEE
Q 039719           77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHTE-NGILRVT  150 (186)
Q Consensus        77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~~-nGvL~I~  150 (186)
                      +.|++++|.|.++|||++++||+|++++ +.|+|+|++...     +.+|+|.|+|.||.+||.++|+|+|+ ||+|+|+
T Consensus         2 ~~E~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~   80 (85)
T 3q9p_A            2 GSHTADRWRVSLDVNHFAPDELTVKTKD-GVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVE   80 (85)
T ss_dssp             -CCCCCEEEEEEECTTTCCSEEEEEEET-TEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEE
T ss_pred             ccCcCCEEEEEEECCCCChHHEEEEEEC-CEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEE
Confidence            4589999999999999999999999999 899999998753     56799999999999999999999998 9999999


Q ss_pred             Eecc
Q 039719          151 VPKL  154 (186)
Q Consensus       151 lPK~  154 (186)
                      +||.
T Consensus        81 lPK~   84 (85)
T 3q9p_A           81 APMP   84 (85)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9996

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=99.87  E-value=8.2e-22  Score=140.58  Aligned_cols=80  Identities=20%  Similarity=0.364  Sum_probs=68.0

Q ss_pred             EECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCCEEEEEE
Q 039719           78 METPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENGILRVTV  151 (186)
Q Consensus        78 ~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL~I~l  151 (186)
                      .+++++|+|.++|||++++||+|++++ +.|+|+|++...     |..+.|.|+|.||.+||.++|+|+| +||+|+|++
T Consensus         2 k~~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~   80 (90)
T 2y1y_A            2 AMEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNG   80 (90)
T ss_dssp             ----CCEEEEEECTTSCGGGEEEEEET-TEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEE
T ss_pred             CcCCCEEEEEEECCCCcHHHeEEEEEC-CEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEE
Confidence            368899999999999999999999999 899999998653     6677899999999999999999999 899999999


Q ss_pred             eccCccc
Q 039719          152 PKLAEEK  158 (186)
Q Consensus       152 PK~~~~~  158 (186)
                      ||.+.++
T Consensus        81 pK~~~~~   87 (90)
T 2y1y_A           81 PRKQVSG   87 (90)
T ss_dssp             CBC----
T ss_pred             EcCCCCC
Confidence            9987653

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.84  E-value=3.9e-21  Score=165.35  Aligned_cols=86  Identities=16%  Similarity=0.196  Sum_probs=80.9

Q ss_pred             ccceeEEEECCC----EEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece----eeeeEEEEEEEcCCCCCcCceEEEE
Q 039719           71 ALARADWMETPT----IHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE----WTFGKFWRQFRMHMSTDLDHIKAHT  142 (186)
Q Consensus        71 ~~p~vdi~e~~~----~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~----~~~~~f~R~~~LP~~vd~~~i~A~~  142 (186)
                      ..|++||+|+++    +|.|.++|||++++||+|++++ +.|+|+|++..+    +.+|+|.|+|.||.+||.++|+|+|
T Consensus        97 ~~p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~-~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~  175 (314)
T 2bol_A           97 LDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADK-NKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATI  175 (314)
T ss_dssp             TGGGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEET-TEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEE
T ss_pred             CCCccceEEcCCCCceEEEEEEECCCCchHHeEEEEEC-CEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEE
Confidence            568999999999    9999999999999999999999 899999998754    6889999999999999999999999


Q ss_pred             e-CCEEEEEEeccCcc
Q 039719          143 E-NGILRVTVPKLAEE  157 (186)
Q Consensus       143 ~-nGvL~I~lPK~~~~  157 (186)
                      + ||||+|++||.+++
T Consensus       176 ~~nGVL~I~lPK~~~~  191 (314)
T 2bol_A          176 TTDDVLVIEAPVNEPN  191 (314)
T ss_dssp             CSSSEEEEEEEBSSCC
T ss_pred             eCCCEEEEEEeccCcc
Confidence            9 99999999998765

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.76  E-value=1.8e-18  Score=148.68  Aligned_cols=81  Identities=17%  Similarity=0.281  Sum_probs=71.0

Q ss_pred             ceeEEEECC---CEEEEEEec-CCCCcccEEEEEEeCcEEEEEEEEece--------eeeeEEEEEEEcCCCCCcCceEE
Q 039719           73 ARADWMETP---TIHVITLDI-PVMKKDNVKIEVEENRVLRVSGERKTE--------WTFGKFWRQFRMHMSTDLDHIKA  140 (186)
Q Consensus        73 p~vdi~e~~---~~y~l~v~L-PG~~~edi~V~v~~~~~L~I~g~~~~~--------~~~~~f~R~~~LP~~vd~~~i~A  140 (186)
                      ..++|.+++   ++|.|+++| ||++++||+|++++ |.|+|+|+++.+        +.+|+|+|+|.||++||.++|+|
T Consensus       221 ~~~~i~e~~~~~~~~~v~~~ldPG~~~edi~V~v~~-~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A  299 (314)
T 2bol_A          221 EGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKG-NKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQA  299 (314)
T ss_dssp             CEEEEEECTTSCEEEEEEEECCTTCCGGGEEEEESS-SEEEEEEEEC------------CEEEEEEEECSSEECGGGCEE
T ss_pred             CCCcEEEecCCCcEEEEEEEcCCCCChHHeEEEEEC-CEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEE
Confidence            447777655   589999999 99999999999999 899999998754        58999999999999999999999


Q ss_pred             EEeCCEEEEEEecc
Q 039719          141 HTENGILRVTVPKL  154 (186)
Q Consensus       141 ~~~nGvL~I~lPK~  154 (186)
                      +|+||||+|++||.
T Consensus       300 ~~~dGvL~i~~Pk~  313 (314)
T 2bol_A          300 EIVDGLMVVEAPLF  313 (314)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEeCCEEEEEEecC
Confidence            99999999999986

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.11  E-value=2.2e-10  Score=80.60  Aligned_cols=81  Identities=21%  Similarity=0.202  Sum_probs=72.7

Q ss_pred             cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719           72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV  151 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l  151 (186)
                      .++++|+++++...|.+.+||+.++++.|.+.+ +.|.|++....   ...|...+.|+..|+++..++++.+|.|.|++
T Consensus         2 ~~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~-~~l~v~~~~~~---~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L   77 (92)
T 2xcm_C            2 KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGE-QILSVVIEVPG---EDAYYLQPRLFGKIIPDKCKYEVLSTKIEICL   77 (92)
T ss_dssp             CSEEEEEEETTEEEEEEECCSCCGGGEEEEECS-SBEEEEECCTT---SCCEEECCBBSSCBCGGGCEEEECSSCEEEEE
T ss_pred             CccccEEeCCCEEEEEEEECCCChHHeEEEEEC-CEEEEEEEcCC---CcEEEEeeEcCCccCchhEEEEEECCEEEEEE
Confidence            468999999999999999999999999999999 78999976432   24688899999999999999999999999999


Q ss_pred             eccCc
Q 039719          152 PKLAE  156 (186)
Q Consensus       152 PK~~~  156 (186)
                      +|.++
T Consensus        78 ~K~~~   82 (92)
T 2xcm_C           78 AKADI   82 (92)
T ss_dssp             EBSSS
T ss_pred             EcCCC
Confidence            99864

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.11  E-value=3.2e-10  Score=83.13  Aligned_cols=82  Identities=17%  Similarity=0.207  Sum_probs=73.7

Q ss_pred             ccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEE
Q 039719           71 ALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVT  150 (186)
Q Consensus        71 ~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~  150 (186)
                      ..++++|+++++.+.|.+.+||+++++++|.+.+ +.|.|++....   ...|...+.|+..|+++..++++.+|.|.|+
T Consensus         8 ~~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~-~~l~v~~~~~~---~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~   83 (114)
T 1rl1_A            8 SKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSE-KELSALVKLPS---GEDYNLKLELLHPIIPEQSTFKVLSTKIEIK   83 (114)
T ss_dssp             CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSS-SCEEEEEECTT---SSEEEEEECBSSCCCGGGEEEEECSSSEEEE
T ss_pred             CCCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEc-CEEEEEEEeCC---CcEEEEEeeCCCcCCccccEEEEECCEEEEE
Confidence            4567999999999999999999999999999999 78999987532   2478899999999999999999999999999


Q ss_pred             EeccCc
Q 039719          151 VPKLAE  156 (186)
Q Consensus       151 lPK~~~  156 (186)
                      ++|.++
T Consensus        84 L~K~~~   89 (114)
T 1rl1_A           84 LKKPEA   89 (114)
T ss_dssp             EECSSC
T ss_pred             EEcCCC
Confidence            999865

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=98.43  E-value=2.2e-06  Score=63.06  Aligned_cols=80  Identities=14%  Similarity=0.265  Sum_probs=70.6

Q ss_pred             cccceeEEEECCCEEEEEEecCCCC--cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCC-CcCceEEEE--eC
Q 039719           70 LALARADWMETPTIHVITLDIPVMK--KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMST-DLDHIKAHT--EN  144 (186)
Q Consensus        70 ~~~p~vdi~e~~~~y~l~v~LPG~~--~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~v-d~~~i~A~~--~n  144 (186)
                      ...|...|..+++..+|.+.+|.++  ..++++.+++ +.+...        ...|.-++.||..| +.+.-+|+|  ++
T Consensus        15 ~iTP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~-~~F~F~--------~~PYyLRL~lP~~vved~~~~A~YD~d~   85 (115)
T 3eud_A           15 MITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQE-NMIIFH--------LSPYYLRLRFPHELIDDERSTAQYDSKD   85 (115)
T ss_dssp             CBCCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEET-TEEEEE--------ETTEEEEEECSSCEECSTTCEEEEETTT
T ss_pred             EeCCcEEEEECCCEEEEEEEcCceecccCccEEEEeC-CEEEEe--------cCCeEEEEecCcceecCCCcceEEeCCC
Confidence            4568899999999999999999977  8899999999 788887        56788899999998 878889999  58


Q ss_pred             CEEEEEEeccCccc
Q 039719          145 GILRVTVPKLAEEK  158 (186)
Q Consensus       145 GvL~I~lPK~~~~~  158 (186)
                      |.++|++||..+.+
T Consensus        86 g~~~v~lpK~~~GE   99 (115)
T 3eud_A           86 ECINVKVAKLNKNE   99 (115)
T ss_dssp             TEEEEEEEESSTTC
T ss_pred             cEEEEEEcCCcCCC
Confidence            99999999987653

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=98.41  E-value=3.7e-07  Score=69.15  Aligned_cols=78  Identities=14%  Similarity=0.263  Sum_probs=70.1

Q ss_pred             cceeEEEECCCEEEEEEecCCCC--cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCC-CcCceEEEE--eCCE
Q 039719           72 LARADWMETPTIHVITLDIPVMK--KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMST-DLDHIKAHT--ENGI  146 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LPG~~--~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~v-d~~~i~A~~--~nGv  146 (186)
                      .|...|..+++..+|.+.+|..+  .+++++.+++ ..+.+.        ...|.-++.||..| +.+..+|+|  +.|.
T Consensus         3 TP~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~-~~F~F~--------~~PYyLRL~LP~~V~e~~~~kA~YD~d~~~   73 (134)
T 2k8q_A            3 TPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQE-NMIIFH--------LSPYYLRLRFPHELIDDERSTAQYDSKDEC   73 (134)
T ss_dssp             CSEEEEEECSSEEEEEEECCSSCCCSSSCCCEECS-SSEEEC--------SSSSCEEECCSSCEECCSSCEEEEETTTTE
T ss_pred             CceEEEEECCCEEEEEEEcCccccCccccEEEEeC-CEEEEe--------cCCeEEEecCCCeeecCCCcceeEeccCCE
Confidence            47789999999999999999999  8999999999 788887        55777889999999 999999999  4899


Q ss_pred             EEEEEeccCccc
Q 039719          147 LRVTVPKLAEEK  158 (186)
Q Consensus       147 L~I~lPK~~~~~  158 (186)
                      |+|++||....+
T Consensus        74 ~~VtLpK~~~Ge   85 (134)
T 2k8q_A           74 INVKVAKLNKNE   85 (134)
T ss_dssp             EEEEEEESSTTC
T ss_pred             EEEEEeCCCCCC
Confidence            999999987654

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=98.32  E-value=1.3e-06  Score=76.43  Aligned_cols=71  Identities=15%  Similarity=0.083  Sum_probs=62.0

Q ss_pred             ceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCC-CcCceEEEEeCCEEEEEE
Q 039719           73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMST-DLDHIKAHTENGILRVTV  151 (186)
Q Consensus        73 p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~v-d~~~i~A~~~nGvL~I~l  151 (186)
                      .++.|...  .|.+++.|||+++++|++...+ +.|+|+        .|.|.|.+.||..+ ...-..|+|+||.|+|++
T Consensus       298 ~~~~i~~~--~~~~~l~lP~~~~~~~~l~~~g-deL~v~--------~g~~rR~i~LP~~L~~~~v~~A~~~~~~L~i~~  366 (374)
T 3igf_A          298 KPITIDTH--NRQVRLFLPGFDKKQVKLTQYG-PEVTVE--------AGDQRRNIFLPPALSGRPITGAKFQNNYLIISF  366 (374)
T ss_dssp             CSEEEETT--TTEEEEECTTCCGGGCEEEEET-TEEEEE--------ETTEEEEEECCTTTTTCCEEEEEEETTEEEEEE
T ss_pred             CCEEEEec--cEEEEEECCCCCHHHeEEEEEC-CeEEEE--------ECCEeecccCCHHHcCCCccccEEECCEEEEEE
Confidence            34555433  8999999999999999999998 799999        89999999999997 667788999999999998


Q ss_pred             ecc
Q 039719          152 PKL  154 (186)
Q Consensus       152 PK~  154 (186)
                      -..
T Consensus       367 ~~~  369 (374)
T 3igf_A          367 LEH  369 (374)
T ss_dssp             CCC
T ss_pred             ehh
Confidence            643

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=7.9e-05  Score=55.40  Aligned_cols=81  Identities=10%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             cceeEEEECCCEEEEEEecCCC---CcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEE-cCCCCCcCceEEEEeCCEE
Q 039719           72 LARADWMETPTIHVITLDIPVM---KKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFR-MHMSTDLDHIKAHTENGIL  147 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LPG~---~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~-LP~~vd~~~i~A~~~nGvL  147 (186)
                      .+.++|+++.+...|.+.+||+   +++++.|.+.+ +.|.|++....   ...|.-.+. |-..|+++.-+....++.+
T Consensus        20 ~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~-~~l~v~~~~~~---~~~y~~~~~~L~~~I~~e~S~~~v~~~kV   95 (127)
T 1x5m_A           20 ISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTE-RSFDLLVKNLN---GKSYSMIVNNLLKPISVEGSSKKVKTDTV   95 (127)
T ss_dssp             CCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECS-SEEEEEECSCS---SSCEEEEEECBSSCCCTTTCEEEEETTEE
T ss_pred             ccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEc-CEEEEEEEcCC---CCcEEEEhHHhcCccCcccCEEEEeCCEE
Confidence            4579999999999999999999   89999999999 78999874322   135777785 9999999998888999999


Q ss_pred             EEEEeccCc
Q 039719          148 RVTVPKLAE  156 (186)
Q Consensus       148 ~I~lPK~~~  156 (186)
                      .|+|-|.++
T Consensus        96 ei~L~K~~~  104 (127)
T 1x5m_A           96 LILCRKKVE  104 (127)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEECCC
Confidence            999999864

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=97.92  E-value=4.9e-05  Score=57.40  Aligned_cols=85  Identities=13%  Similarity=0.178  Sum_probs=71.3

Q ss_pred             ccceeEEEEC-CCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEecee------eee---EEEEEEEcCCCCCcCceEE
Q 039719           71 ALARADWMET-PTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEW------TFG---KFWRQFRMHMSTDLDHIKA  140 (186)
Q Consensus        71 ~~p~vdi~e~-~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~------~~~---~f~R~~~LP~~vd~~~i~A  140 (186)
                      ..++++|+++ .+...|.+.++++.++++.|.+.+ +.|.|+.......      ..|   .|.-.+.|-..|+++.-+.
T Consensus        18 ~~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~-~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~   96 (134)
T 1wh0_A           18 AFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFRE-QDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTF   96 (134)
T ss_dssp             SCCCEEEEEETTTEEEEEEECCSBCTTSCEEEECS-SEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEE
T ss_pred             cCCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEEC-CEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEE
Confidence            4678999999 999999999999999999999999 7899986533210      112   6777789999999999888


Q ss_pred             EEeCCEEEEEEeccCc
Q 039719          141 HTENGILRVTVPKLAE  156 (186)
Q Consensus       141 ~~~nGvL~I~lPK~~~  156 (186)
                      +..++.+.|+|.|.+.
T Consensus        97 ~v~~~kIeI~L~K~e~  112 (134)
T 1wh0_A           97 CFTASRIDICLRKRQS  112 (134)
T ss_dssp             EECSSEEEEEEEESSS
T ss_pred             EEeCCEEEEEEEECCC
Confidence            8899999999999854

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=97.80  E-value=0.00028  Score=52.11  Aligned_cols=83  Identities=14%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             cccceeEEEECCCEEEEEEecC-CC-CcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCE-
Q 039719           70 LALARADWMETPTIHVITLDIP-VM-KKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGI-  146 (186)
Q Consensus        70 ~~~p~vdi~e~~~~y~l~v~LP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGv-  146 (186)
                      ...+.+.|+++.+...|.+.|| |+ +.+|+.|.+.. +.|.|+.....   ...+.-...|...|+++.-...+++|- 
T Consensus        17 ~~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~-~~l~v~~~~~~---~~~~~~~~~L~~~I~~e~S~w~i~~~k~   92 (124)
T 1wgv_A           17 AVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSS-SSIRVAMLEEN---GERVLMEGKLTHKINTESSLWSLEPGKC   92 (124)
T ss_dssp             BCCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECS-SEEEEEEECSS---SEEEEEEEEBSSCBCTTTCEEEECTTSE
T ss_pred             CcCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEc-CEEEEEEEccC---CCceEEcccccCcCCCcCCEEEEeCCCE
Confidence            3467899999999999999999 88 99999999999 78999865311   112345678999999999999998885 


Q ss_pred             EEEEEeccCc
Q 039719          147 LRVTVPKLAE  156 (186)
Q Consensus       147 L~I~lPK~~~  156 (186)
                      |.|+|-|.+.
T Consensus        93 v~i~L~K~~~  102 (124)
T 1wgv_A           93 VLVNLSKVGE  102 (124)
T ss_dssp             EEEEECBSSS
T ss_pred             EEEEEEECCC
Confidence            9999999853

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=97.70  E-value=0.00023  Score=52.70  Aligned_cols=79  Identities=15%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             ceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719           73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP  152 (186)
Q Consensus        73 p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP  152 (186)
                      |.++++++.+...|.+.+|+.  +++.|.++. +.|.+++.....  ...|.-.+.|-..|+++..+.+..++.+.|+|.
T Consensus         4 ~~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~-~~l~~~~~~~~~--~~~y~~~l~L~~~I~~e~S~~~v~~~kiei~L~   78 (125)
T 1ejf_A            4 ASAKWYDRRDYVFIEFCVEDS--KDVNVNFEK-SKLTFSCLGGSD--NFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLR   78 (125)
T ss_dssp             CCEEEEECSSEEEEEECCTTE--EEEEEEEET-TEEEEEEEETTT--TEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEE
T ss_pred             CceeEEeCCCEEEEEEEecCC--CceEEEEEC-CEEEEEEEeCCC--CceEEEEEEccceeccccCEEEECCCEEEEEEE
Confidence            479999999999999999996  699999998 799999764211  135788899999999999998888899999999


Q ss_pred             ccCc
Q 039719          153 KLAE  156 (186)
Q Consensus       153 K~~~  156 (186)
                      |.++
T Consensus        79 K~~~   82 (125)
T 1ejf_A           79 KGES   82 (125)
T ss_dssp             ESST
T ss_pred             ECCC
Confidence            9864

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=97.62  E-value=0.00037  Score=51.98  Aligned_cols=76  Identities=13%  Similarity=0.121  Sum_probs=62.8

Q ss_pred             cceeEEEECCCEEEEEEecC-CCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEE
Q 039719           72 LARADWMETPTIHVITLDIP-VMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVT  150 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~  150 (186)
                      .+.+.|+.+.+...|.+.|| |++.+++.|.+.. +.|.|++.  .    .. .-...|...|+++.-...+++|-|.|+
T Consensus         4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~-~~l~v~~~--g----~~-~~~~~L~~~I~~e~S~w~i~~~kv~i~   75 (131)
T 2o30_A            4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVG-KKICVKNQ--G----EI-VIDGELLHEVDVSSLWWVINGDVVDVN   75 (131)
T ss_dssp             -CCCEEEEETTEEEEEEECC---CCSCEEEEEET-TEEEEEET--T----EE-EEEEEBSSCEEEEEEEEEEETTEEEEE
T ss_pred             CCcEEEEecCCEEEEEEECCCCCCccceEEEEEC-CEEEEEEC--C----Ee-eEccccccccccccCEEEEeCCEEEEE
Confidence            46799999999999999996 8999999999999 78999863  1    12 345689999999998889999999999


Q ss_pred             EeccC
Q 039719          151 VPKLA  155 (186)
Q Consensus       151 lPK~~  155 (186)
                      +-|..
T Consensus        76 L~K~~   80 (131)
T 2o30_A           76 VTKKR   80 (131)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            99983

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=97.61  E-value=0.00076  Score=49.68  Aligned_cols=80  Identities=14%  Similarity=0.216  Sum_probs=66.4

Q ss_pred             cccceeEEEECCCEEEEEEecC-C--CCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCC-
Q 039719           70 LALARADWMETPTIHVITLDIP-V--MKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENG-  145 (186)
Q Consensus        70 ~~~p~vdi~e~~~~y~l~v~LP-G--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nG-  145 (186)
                      ...+.+.|..+.+...|.+.|| |  ++.+||.|.+.. +.|.|..+..      .+.-...|...|+++.....+++| 
T Consensus        14 ~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~-~~l~v~~kg~------~~~~~g~L~~~I~~deS~w~i~~~~   86 (121)
T 3qor_A           14 ADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQR-RHLRVGLKGQ------PAIIDGELYNEVKVEESSWLIADGA   86 (121)
T ss_dssp             CBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEET-TEEEEEETTS------CCSEEEEBSSCBCGGGCEEEEETTT
T ss_pred             CcCCCEEEEEccceEEEEEECCCCCcccccceEEEEEc-CEEEEEEcCc------ceEEeccccccccccccEEEEcCCC
Confidence            4567899999999999999999 4  799999999999 7888874321      123356799999999999999998 


Q ss_pred             EEEEEEeccCc
Q 039719          146 ILRVTVPKLAE  156 (186)
Q Consensus       146 vL~I~lPK~~~  156 (186)
                      .|.|+|-|...
T Consensus        87 ~i~i~L~K~~~   97 (121)
T 3qor_A           87 VVTVHLEKINK   97 (121)
T ss_dssp             EEEEEEEBSSS
T ss_pred             EEEEEEEECCC
Confidence            99999999754

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=97.55  E-value=0.00022  Score=53.12  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=66.4

Q ss_pred             cccceeEEEECCCEEEEEEecC-C--CCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCC-
Q 039719           70 LALARADWMETPTIHVITLDIP-V--MKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENG-  145 (186)
Q Consensus        70 ~~~p~vdi~e~~~~y~l~v~LP-G--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nG-  145 (186)
                      ...+.+.|+++.+...|.+.|| |  ++.+++.|.+.. +.|.|+.+..      .+.-...|...|+++.-....++| 
T Consensus         5 ~~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~-~~l~v~~kg~------~~~~~~~L~~~I~~e~s~w~i~~~k   77 (131)
T 1wfi_A            5 SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQR-RHLRVGLKGQ------PPVVDGELYNEVKVEESSWLIEDGK   77 (131)
T ss_dssp             SSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEET-TEEEEEETTS------CCSBCSCBSSCBCSTTCEEEEETTT
T ss_pred             CCCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeC-CEEEEEECCc------eEEEecccccccccccCEEEEcCCC
Confidence            3467899999999999999999 6  899999999999 7899986421      112235688899999999999998 


Q ss_pred             EEEEEEeccCc
Q 039719          146 ILRVTVPKLAE  156 (186)
Q Consensus       146 vL~I~lPK~~~  156 (186)
                      .|.|++-|..+
T Consensus        78 ~v~i~L~K~~~   88 (131)
T 1wfi_A           78 VVTVHLEKINK   88 (131)
T ss_dssp             EEEEEEEBSSS
T ss_pred             EEEEEEEECCC
Confidence            89999999864

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=97.55  E-value=0.00073  Score=52.10  Aligned_cols=78  Identities=14%  Similarity=0.204  Sum_probs=66.1

Q ss_pred             ccceeEEEECCCEEEEEEecC-CCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCE-EE
Q 039719           71 ALARADWMETPTIHVITLDIP-VMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGI-LR  148 (186)
Q Consensus        71 ~~p~vdi~e~~~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGv-L~  148 (186)
                      ..+.+.|+.+.+...|.+.|| |++.++|.|.+.. +.|.|+.+..      . .-...|...|+++.-...++++- |.
T Consensus        12 ~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~-~~L~v~~kg~------~-~l~g~L~~~I~~eeS~w~i~~~k~v~   83 (157)
T 2rh0_A           12 GTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQS-RHVALAVGGR------E-ILKGKLFDSTIADEGTWTLEDRKMVR   83 (157)
T ss_dssp             ECSSEEEEECSSEEEEEEECCTTCCGGGEEEEECS-SEEEEEETTE------E-EEEEEBSSCBCGGGCEEEEECCCEEE
T ss_pred             CCCcEEEEecCCEEEEEEECCCCCcccceEEEEec-CEEEEEECCE------E-EEeeccccccCccccEEEEcCCcEEE
Confidence            457899999999999999998 8999999999999 7899986411      2 24567999999999999999885 99


Q ss_pred             EEEeccCc
Q 039719          149 VTVPKLAE  156 (186)
Q Consensus       149 I~lPK~~~  156 (186)
                      |+|-|...
T Consensus        84 I~L~K~~~   91 (157)
T 2rh0_A           84 IVLTKTKR   91 (157)
T ss_dssp             EEEEBSSC
T ss_pred             EEEEEcCC
Confidence            99999864

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=97.43  E-value=0.00034  Score=53.66  Aligned_cols=78  Identities=9%  Similarity=0.126  Sum_probs=65.9

Q ss_pred             cceeEEEECCCEEEEEEecCCCCcccEEEEEE-eCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEE
Q 039719           72 LARADWMETPTIHVITLDIPVMKKDNVKIEVE-ENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVT  150 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~-~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~  150 (186)
                      .|.++|+++.+...|.+.+|++  ++++|.++ + +.|.+++....   ...|.-.+.|-..|+++ .+.+....-+.|+
T Consensus         4 ~P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~-~~l~~~~~~~~---~~~y~~~l~L~~~Idpe-S~~~v~~~kIei~   76 (150)
T 2kmw_A            4 NPEVLWAQRSDKVYLTVALPDA--KDISVKCEPQ-GLFSFSALGAQ---GERFEFSLELYGKIMTE-YRKNVGLRNIIFS   76 (150)
T ss_dssp             CCCEEEEECSSEEEEEECCSSE--EEEEECCCTT-EEEEEEEETTT---TEEEEEEEEBSSCEEEE-EEEEEESSSEEEE
T ss_pred             CCcEEEEeCCCEEEEEEEeCCC--CceEEEEecC-CEEEEEEEcCC---CceEEEEeEhhhccccc-ceEEecCCEEEEE
Confidence            5789999999999999999998  57899998 6 78999987211   23678889999999999 8888888889999


Q ss_pred             EeccCc
Q 039719          151 VPKLAE  156 (186)
Q Consensus       151 lPK~~~  156 (186)
                      |.|.++
T Consensus        77 L~K~e~   82 (150)
T 2kmw_A           77 IQKEER   82 (150)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            999764

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00017  Score=54.29  Aligned_cols=82  Identities=10%  Similarity=0.159  Sum_probs=61.0

Q ss_pred             ccceeEEEECCCE-------EEEEEecCCCCcccEEEEEEeCcEEEEEEEEecee---eeeEEEEEEEcCCCCCcCceEE
Q 039719           71 ALARADWMETPTI-------HVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEW---TFGKFWRQFRMHMSTDLDHIKA  140 (186)
Q Consensus        71 ~~p~vdi~e~~~~-------y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~---~~~~f~R~~~LP~~vd~~~i~A  140 (186)
                      ..|.++|+++.+.       ..|.+.+|+++  +++|.+.. +.|.+++......   ....|.-.+.|...|+++..+.
T Consensus         5 ~~p~~~W~Q~~~~~~~~k~~V~ltI~~~~~~--~~~V~~~~-~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~   81 (134)
T 2cg9_X            5 INPQVAWAQRSSTTDPERNYVLITVSIADCD--APELTIKP-SYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMH   81 (134)
T ss_dssp             ------CBCCCEEECCCSSEEEEECCCSSEE--SCCCCBCS-SEEEECCEEC-------CEEBCEEEECSSCCCSSSEEE
T ss_pred             cCCCEEEEeCCCCcCCcCCEEEEEEEecCCC--ceEEEEEC-CEEEEEEecccccCCccCceEEEEEEChhhccccccEE
Confidence            4577888888776       99999999984  88888888 7899987653200   0136778899999999999999


Q ss_pred             EEeCCE-EEEEEeccC
Q 039719          141 HTENGI-LRVTVPKLA  155 (186)
Q Consensus       141 ~~~nGv-L~I~lPK~~  155 (186)
                      ++.++. +.|+|.|.+
T Consensus        82 ~v~~~~~vei~L~K~~   97 (134)
T 2cg9_X           82 KVANGQHYFLKLYKKD   97 (134)
T ss_dssp             EECCC--CEEEEEECS
T ss_pred             EECCCEEEEEEEEECC
Confidence            999998 999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1gmea_	150	b.15.1.1 (A:) Small heat shock protein {Wheat (Tri	6e-22
d1shsa_	115	b.15.1.1 (A:) Small heat shock protein {Archaeon M	8e-15

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 84.8 bits (209), Expect = 6e-22
 Identities = 56/144 (38%), Positives = 72/144 (50%), Gaps = 13/144 (9%)

Query: 36  SPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKK 95
           S  FD    +  + F         I+ G       A AR DW ETP  HV   D+P +KK
Sbjct: 6   SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 65

Query: 96  DNVKIEVEENRVLRVSGERKTEWT------------FGKFWRQFRMHMSTDLDHIKAHTE 143
           + VK+EVE+  VL VSGER  E               GKF R+FR+     ++ +KA  E
Sbjct: 66  EEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLE 125

Query: 144 NGILRVTVPKLAEEKKRQPEVINI 167
           NG+L VTVPK AE KK + + I I
Sbjct: 126 NGVLTVTVPK-AEVKKPEVKAIQI 148

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 65.0 bits (158), Expect = 8e-15
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 14/102 (13%)

Query: 76  DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEW-------------TFGK 122
             +E      +   +P + K+++ +    +  L +  +R                    +
Sbjct: 14  SIIEGDQHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEE 72

Query: 123 FWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEV 164
            +R  ++  +   ++  A  ENG+L V +PK     K+   +
Sbjct: 73  IYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	99.95
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	99.91
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	98.5
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	97.63
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	97.41
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	97.15
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	97.1
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	90.96
d1rl6a1	75	Ribosomal protein L6 {Bacillus stearothermophilus	84.61
d1vqoe1	79	Ribosomal protein L6 {Archaeon Haloarcula marismor	83.05

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.95  E-value=1.4e-28  Score=189.17  Aligned_cols=100  Identities=47%  Similarity=0.721  Sum_probs=86.7

Q ss_pred             ccccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece------------eeeeEEEEEEEcCCCCCcC
Q 039719           69 TLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE------------WTFGKFWRQFRMHMSTDLD  136 (186)
Q Consensus        69 ~~~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~------------~~~~~f~R~~~LP~~vd~~  136 (186)
                      ....|++||+|++++|+|+++|||++++||+|++++++.|+|+|++..+            +.+|+|+|+|.||.+||.+
T Consensus        39 ~~~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~  118 (150)
T d1gmea_          39 AFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVE  118 (150)
T ss_dssp             HHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGG
T ss_pred             ccCCCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeec
Confidence            3457899999999999999999999999999999874689999987653            3678999999999999999


Q ss_pred             ceEEEEeCCEEEEEEeccCcccCCCCeEEEecc
Q 039719          137 HIKAHTENGILRVTVPKLAEEKKRQPEVINIDE  169 (186)
Q Consensus       137 ~i~A~~~nGvL~I~lPK~~~~~~~~~k~I~I~~  169 (186)
                      +|+|+|+||+|+|++||.++++ .+.++|+|.|
T Consensus       119 ~i~A~~~nGvL~I~lpK~~~~~-~~~~~I~I~g  150 (150)
T d1gmea_         119 EVKAGLENGVLTVTVPKAEVKK-PEVKAIQISG  150 (150)
T ss_dssp             GCEEEEETTEEEEEEECCCCCT-TCCCCCCCCC
T ss_pred             eeEEEEECCEEEEEEEcCCcCC-CCceEEeccC
Confidence            9999999999999999987664 3456677754

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.91  E-value=1.2e-24  Score=159.68  Aligned_cols=95  Identities=18%  Similarity=0.268  Sum_probs=85.6

Q ss_pred             cccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-------------eeeeEEEEEEEcCCCCCcC
Q 039719           70 LALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------------WTFGKFWRQFRMHMSTDLD  136 (186)
Q Consensus        70 ~~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-------------~~~~~f~R~~~LP~~vd~~  136 (186)
                      ..++++||+|++++|.|.++|||++++||+|++++ +.|+|+|++...             +.+|.|+|+|.||.++|.+
T Consensus         8 ~~~~pvdi~e~~~~~~i~~~lPG~~~edi~v~v~~-~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~   86 (115)
T d1shsa_           8 KGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEE   86 (115)
T ss_dssp             ESCCCEEEEECSSEEEEEEECTTCCGGGEEEEEET-TEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGG
T ss_pred             CCcCceEEEEcCCEEEEEEECCCCCHHHEEEEEEC-CEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeec
Confidence            45677999999999999999999999999999999 899999997653             2578999999999999999


Q ss_pred             ceEEEEeCCEEEEEEeccCcccCCCCeEEEec
Q 039719          137 HIKAHTENGILRVTVPKLAEEKKRQPEVINID  168 (186)
Q Consensus       137 ~i~A~~~nGvL~I~lPK~~~~~~~~~k~I~I~  168 (186)
                      +++|.|+||+|+|++||.+..   .+++|.|+
T Consensus        87 ~i~A~~~nGvL~I~lpK~~~~---~~~~I~Ie  115 (115)
T d1shsa_          87 NASAKFENGVLSVILPKAESS---IKKGINIE  115 (115)
T ss_dssp             GCEEEEETTEEEEEEEBCGGG---CCEECCCC
T ss_pred             ceEEEEECCEEEEEEEeCCCC---CCceeeeC
Confidence            999999999999999998655   47888875

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.5e-07  Score=62.51  Aligned_cols=80  Identities=18%  Similarity=0.216  Sum_probs=69.9

Q ss_pred             ceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719           73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP  152 (186)
Q Consensus        73 p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP  152 (186)
                      .+++|+++++...|.+.+||+.++++.|.+.+ +.|.++.....   ...|.-.+.|...|+++..+.++.++.|.|+|.
T Consensus         3 ~ry~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~-~~l~v~~~~~~---~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~   78 (92)
T d1rl1a_           3 IKYDWYQTESQVVITLMIKNVQKNDVNVEFSE-KELSALVKLPS---GEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLK   78 (92)
T ss_dssp             CCEEEEECSSEEEEEECCCSCCGGGEEEECSS-SCEEEEEECTT---SSEEEEEECBSSCCCGGGEEEEECSSSEEEEEE
T ss_pred             CceeEEeCCCEEEEEEEeCCCChHheEEEEec-CEEEEEEEcCC---CcEEEEEEEcCcccCchhcEEEEeCCEEEEEEE
Confidence            56899999999999999999999999999999 78888865332   236778889999999999999999999999999


Q ss_pred             ccCc
Q 039719          153 KLAE  156 (186)
Q Consensus       153 K~~~  156 (186)
                      |.++
T Consensus        79 K~~~   82 (92)
T d1rl1a_          79 KPEA   82 (92)
T ss_dssp             CSSC
T ss_pred             ECCC
Confidence            9753

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.0002  Score=49.84  Aligned_cols=81  Identities=15%  Similarity=0.151  Sum_probs=66.1

Q ss_pred             cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719           72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV  151 (186)
Q Consensus        72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l  151 (186)
                      ++++.++.+.+...|.+.+||.  .+++|.++. +.|.+++.....  ...|.-.+.|...|+++....++.++-+.|++
T Consensus         3 p~~~~W~Qt~~~V~i~I~v~~~--~~~~v~i~~-~~l~~~~~~~~~--~~~y~l~~~L~~~I~~~~s~~~v~~~kiei~L   77 (110)
T d1ejfa_           3 PASAKWYDRRDYVFIEFCVEDS--KDVNVNFEK-SKLTFSCLGGSD--NFKHLNEIDLFHCIDPNDSKHKRTDRSILCCL   77 (110)
T ss_dssp             CCCEEEEECSSEEEEEECCTTE--EEEEEEEET-TEEEEEEEETTT--TEEEEEEEEBSSCEEEEEEEEEECSSCEEEEE
T ss_pred             CCCcEEEECCCEEEEEEEeCCC--CCceEEEEe-ceEEEEEEecCC--CceEEEEEEcccCcccCccEEEEeCCEEEEEE
Confidence            4668999999999999999985  467777777 678888764331  13577788999999999999999999999999


Q ss_pred             eccCcc
Q 039719          152 PKLAEE  157 (186)
Q Consensus       152 PK~~~~  157 (186)
                      .|+++.
T Consensus        78 ~K~~~~   83 (110)
T d1ejfa_          78 RKGESG   83 (110)
T ss_dssp             EESSTT
T ss_pred             EEcCCC
Confidence            998653

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00051  Score=49.96  Aligned_cols=84  Identities=10%  Similarity=0.122  Sum_probs=70.2

Q ss_pred             cceeEEEECC-CEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece--e-------eeeEEEEEEEcCCCCCcCceEEE
Q 039719           72 LARADWMETP-TIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--W-------TFGKFWRQFRMHMSTDLDHIKAH  141 (186)
Q Consensus        72 ~p~vdi~e~~-~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~--~-------~~~~f~R~~~LP~~vd~~~i~A~  141 (186)
                      ..+-|++++. +...|.+.+.|+.+++++|.+.+ +.|.|+-.....  +       ....|.-.+.|-..|+++.-+..
T Consensus        19 ~ir~dwyq~~~~~V~VtI~~K~v~ke~~~V~f~~-~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~~   97 (134)
T d1wh0a_          19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFRE-QDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFC   97 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECS-SEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEE
T ss_pred             ccccceeecCCCEEEEEEEeCCCchhheEEEEeC-CEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEEE
Confidence            4478899985 79999999999999999999999 789998643221  0       12378888999999999999999


Q ss_pred             EeCCEEEEEEeccCc
Q 039719          142 TENGILRVTVPKLAE  156 (186)
Q Consensus       142 ~~nGvL~I~lPK~~~  156 (186)
                      ...+-+.|+|.|++.
T Consensus        98 v~~~kiei~L~K~~~  112 (134)
T d1wh0a_          98 FTASRIDICLRKRQS  112 (134)
T ss_dssp             ECSSEEEEEEEESSS
T ss_pred             eCCCEEEEEEEeCCC
Confidence            999999999999764

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.0014  Score=47.03  Aligned_cols=81  Identities=15%  Similarity=0.195  Sum_probs=63.0

Q ss_pred             cccceeEEEECCCEEEEEEecC---CCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCC-
Q 039719           70 LALARADWMETPTIHVITLDIP---VMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENG-  145 (186)
Q Consensus        70 ~~~p~vdi~e~~~~y~l~v~LP---G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nG-  145 (186)
                      ...|.+.|.++.+...|.+.+|   |+++++|.|.+.. +.|.|..+....+..      -.|...|+++...-.++|| 
T Consensus         5 ~~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~-~~l~v~v~~~~~ll~------g~L~~~I~~des~W~ied~~   77 (131)
T d1wfia_           5 SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQR-RHLRVGLKGQPPVVD------GELYNEVKVEESSWLIEDGK   77 (131)
T ss_dssp             SSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEET-TEEEEEETTSCCSBC------SCBSSCBCSTTCEEEEETTT
T ss_pred             CCCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeC-CEEEEEEcCCceeec------ccccCcccccccEEEEeCCC
Confidence            4578899999999998888764   7899999999999 788887443221111      2578899999888888875 


Q ss_pred             EEEEEEeccCcc
Q 039719          146 ILRVTVPKLAEE  157 (186)
Q Consensus       146 vL~I~lPK~~~~  157 (186)
                      +|.|+|-|..+.
T Consensus        78 ~l~i~L~K~~~~   89 (131)
T d1wfia_          78 VVTVHLEKINKM   89 (131)
T ss_dssp             EEEEEEEBSSSC
T ss_pred             EEEEEEEECCCC
Confidence            899999997543

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0039  Score=43.91  Aligned_cols=81  Identities=14%  Similarity=0.178  Sum_probs=61.5

Q ss_pred             ccceeEEEECCCEEEEEEecCC--CCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCE-E
Q 039719           71 ALARADWMETPTIHVITLDIPV--MKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGI-L  147 (186)
Q Consensus        71 ~~p~vdi~e~~~~y~l~v~LPG--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGv-L  147 (186)
                      ....+.|.++.+...|.+.||.  .+.+||.|++.. +.|.|+-....   ...+.-...|...|+++.-.-.++++. |
T Consensus        18 ~~~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~-~~l~v~v~~~~---~~~~~l~g~L~~~I~~deS~w~i~~~~~~   93 (124)
T d1wgva_          18 VRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSS-SSIRVAMLEEN---GERVLMEGKLTHKINTESSLWSLEPGKCV   93 (124)
T ss_dssp             CCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECS-SEEEEEEECSS---SEEEEEEEEBSSCBCTTTCEEEECTTSEE
T ss_pred             CCCCeEEEeECCEEEEEEEeCCCCcchhhEEEEEEe-CEEEEEEeccC---CcceEEeCcccCcccccccEEEEeCCCEE
Confidence            3557999999999999999984  466899999999 78888754332   124445578999999999999998885 4


Q ss_pred             EEEEeccC
Q 039719          148 RVTVPKLA  155 (186)
Q Consensus       148 ~I~lPK~~  155 (186)
                      .+.+.|..
T Consensus        94 i~~lkK~~  101 (124)
T d1wgva_          94 LVNLSKVG  101 (124)
T ss_dssp             EEEECBSS
T ss_pred             EEEEEecC
Confidence            55555543

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=90.96  E-value=0.27  Score=35.04  Aligned_cols=31  Identities=26%  Similarity=0.274  Sum_probs=25.7

Q ss_pred             EEEEEecC-CCCcccEEEEEEeCcEEEEEEEEe
Q 039719           84 HVITLDIP-VMKKDNVKIEVEENRVLRVSGERK  115 (186)
Q Consensus        84 y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~~~  115 (186)
                      |.-.+.|| +++.++|+-++++ |+|+|+..+.
T Consensus       105 f~r~~~LP~~vd~~~i~A~~~n-GvL~I~lpK~  136 (150)
T d1gmea_         105 FVRRFRLLEDAKVEEVKAGLEN-GVLTVTVPKA  136 (150)
T ss_dssp             EEEEEECSSCCCGGGCEEEEET-TEEEEEEECC
T ss_pred             EEEEEECCCCeeeceeEEEEEC-CEEEEEEEcC
Confidence            44468898 8999999999988 8999997653

>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.61  E-value=0.93  Score=28.58  Aligned_cols=43  Identities=23%  Similarity=0.409  Sum_probs=32.5

Q ss_pred             cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719           95 KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV  151 (186)
Q Consensus        95 ~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l  151 (186)
                      |++++|++++ +.|+|+|.+      |+..+  .||..|     +...+|+.|.|..
T Consensus         5 P~gV~v~i~~-~~i~vkGpk------G~L~~--~~~~~v-----~i~~~~~~i~v~~   47 (75)
T d1rl6a1           5 PAGVTVTVNG-NTVTVKGPK------GELTR--TFHPDM-----TITVEGNVITVTR   47 (75)
T ss_dssp             CTTCEEEEET-TEEEEEETT------EEEEE--ECCTTC-----EEEEETTEEEEEC
T ss_pred             CCCcEEEEEC-CEEEEEeCC------EEEEE--eccCcE-----EEEEeCceEEEcc
Confidence            6889999999 899999875      55554  456544     4678999988873

>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.05  E-value=1.2  Score=28.22  Aligned_cols=44  Identities=16%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719           95 KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV  151 (186)
Q Consensus        95 ~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l  151 (186)
                      |++++|++++ +.|+|+|.+      |+.++.|  |.    ..+....+++.|.|..
T Consensus         8 P~~V~v~i~~-~~i~vkGp~------G~L~~~~--~~----~~v~i~~~~~~i~v~~   51 (79)
T d1vqoe1           8 PEDVDAEQDH-LDITVEGDN------GSVTRRL--WY----PDIDVSVDGDTVVIES   51 (79)
T ss_dssp             CSSCEEEEET-TEEEEEETT------EEEEEEC--CC----TTCEEEECSSEEEEEC
T ss_pred             CCCcEEEEeC-CEEEEEcCC------eEEEEEc--cC----CeEEEEEcCCEEEecc
Confidence            5789999999 899999874      6666554  32    2355677888887764