Citrus Sinensis ID: 039757
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 415 | 2.2.26 [Sep-21-2011] | |||||||
| Q680Z7 | 504 | Pentatricopeptide repeat- | yes | no | 0.992 | 0.817 | 0.507 | 1e-122 | |
| Q9FMA1 | 530 | Pentatricopeptide repeat- | no | no | 0.918 | 0.718 | 0.351 | 6e-70 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.910 | 0.707 | 0.346 | 2e-69 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.913 | 0.611 | 0.347 | 8e-68 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.910 | 0.587 | 0.330 | 5e-66 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.906 | 0.582 | 0.327 | 3e-63 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.934 | 0.613 | 0.336 | 4e-62 | |
| Q9FNN7 | 511 | Pentatricopeptide repeat- | no | no | 0.908 | 0.737 | 0.342 | 3e-61 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.906 | 0.552 | 0.319 | 1e-59 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.910 | 0.607 | 0.329 | 2e-59 |
| >sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/457 (50%), Positives = 293/457 (64%), Gaps = 45/457 (9%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHT-------LLFNTLLHFYSLADSPKKAFLLYKQLQQI- 54
S+ + ++HSH T+ LL H LFN LL YSL ++P A+ LY QLQ++
Sbjct: 48 SNLKIIHQLHSHFTTSGFLLLHQKQNSGKLFLFNPLLRCYSLGETPLHAYFLYDQLQRLH 107
Query: 55 YTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS--KVGFQSHVYVNTALVNM 112
+ H+ P FDSFTY FL++ +P+L + K+GF+SHVYV TALV M
Sbjct: 108 FLSDHNKSLPPFDSFTYLFLLKASSNPRFPSLLLGIGLHGLTLKLGFESHVYVQTALVGM 167
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
Y+ G + D+ K+FDE+PERN VTWNVMITGL G+ E A E+MP R VVSWT I+
Sbjct: 168 YLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTII 227
Query: 173 DGYTRMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
DGY R+++ A + +P+EITILA+LPA+W G ++ C +H Y KRGF
Sbjct: 228 DGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGF 287
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
DIRV+N LID YAKCGCI SA K F +I RKNLVSWT++IS FA+HGMGK AV
Sbjct: 288 VPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSM 347
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL-----------------------HYGCLVDML 318
F+ M+++GLKPNRVT +SVLNACSHGGL HYGCLVDML
Sbjct: 348 FKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDML 407
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
R GRLE+AEKIAL IP E VV R+LLGACS + + E+ ERVTRK++E+ER +GGDY
Sbjct: 408 RRKGRLEEAEKIALEIPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDY 466
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VLM NI G GR++DA+R R+ MD R K PG S V
Sbjct: 467 VLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHSQV 503
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 238/424 (56%), Gaps = 43/424 (10%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83
+T L NT++ SL D P + ++++ P D+FT+ F+++ V +S
Sbjct: 77 NTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKP-----DTFTFPFVLKIAVRVSD 131
Query: 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITG 143
G Q+H + GF S V+V T L+ MY S G L D+ K+FDE+ +++ WN ++ G
Sbjct: 132 VWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAG 191
Query: 144 LVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGA----------STEPSEI 191
K GE++ ARSL E MPC RN VSWT ++ GY + R++ A + EP E+
Sbjct: 192 YGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEV 251
Query: 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251
T+LAVL A G++ + I Y + RG N + ++N +ID YAK G I AL +FE
Sbjct: 252 TLLAVLSACADLGSLELGERICSYVDHRGMNR-AVSLNNAVIDMYAKSGNITKALDVFE- 309
Query: 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309
V +N+V+WT+II+G A HG G A+ F RM K G++PN VTF+++L+ACSH G
Sbjct: 310 -CVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVD 368
Query: 310 --------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349
HYGC++D+LGRAG+L +A+++ +P + + + LL
Sbjct: 369 LGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFK-ANAAIWGSLLA 427
Query: 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409
A + H ++E+GER +++++E N G+Y+L+ N+ + +GR+ ++ +R +M K
Sbjct: 428 ASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKM 487
Query: 410 PGRS 413
G S
Sbjct: 488 AGES 491
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/427 (34%), Positives = 239/427 (55%), Gaps = 49/427 (11%)
Query: 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF---DSFTYSFLIRTCVT 80
+ L+N+++ Y+ +YKQL LR F D FT+ F+ ++C +
Sbjct: 72 NVFLYNSIIRAYTHNSLYCDVIRIYKQL----------LRKSFELPDRFTFPFMFKSCAS 121
Query: 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVM 140
L LG Q+H + K G + HV AL++MY+ L D+ K+FDE+ ER++++WN +
Sbjct: 122 LGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSL 181
Query: 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN----------RSNGASTEPSE 190
++G + G+++ A+ LF M + +VSWT ++ GYT + A EP E
Sbjct: 182 LSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDE 241
Query: 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250
I++++VLP+ Q G++ + IH Y E+RGF V N LI+ Y+KCG I A++LF
Sbjct: 242 ISLISVLPSCAQLGSLELGKWIHLYAERRGFLK-QTGVCNALIEMYSKCGVISQAIQLFG 300
Query: 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL- 309
+E K+++SW+++ISG+A HG A+E F MQ+ +KPN +TFL +L+ACSH G+
Sbjct: 301 --QMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMW 358
Query: 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348
HYGCL+D+L RAG+LE+A +I +P + D + LL
Sbjct: 359 QEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMK-PDSKIWGSLL 417
Query: 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408
+C GN+++ ++E+E + G+YVL+ NI A +G++ D RLR+++ N K
Sbjct: 418 SSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKK 477
Query: 409 FPGRSLV 415
PG SL+
Sbjct: 478 TPGGSLI 484
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (658), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 147/423 (34%), Positives = 239/423 (56%), Gaps = 44/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+N ++ +S +D P+++ LLY+++ S +P +++T+ L++ C LS
Sbjct: 80 TFLWNLMIRGFSCSDEPERSLLLYQRM----LCSSAP----HNAYTFPSLLKACSNLSAF 131
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
TQ+HA I+K+G+++ VY +L+N Y G K + LFD +PE + V+WN +I G
Sbjct: 132 EETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGY 191
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--MNRS--------NGASTEPSEITIL 194
VK G+++ A +LF +M +N +SWT ++ GY + MN+ + EP +++
Sbjct: 192 VKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLA 251
Query: 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254
L A Q GA+ + IH Y K D + LID YAKCG + AL++F++I
Sbjct: 252 NALSACAQLGALEQGKWIHSYLNKTRIR-MDSVLGCVLIDMYAKCGEMEEALEVFKNI-- 308
Query: 255 ERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----- 309
++K++ +WT++ISG+A HG G+ A+ F MQK+G+KPN +TF +VL ACS+ GL
Sbjct: 309 KKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGK 368
Query: 310 -----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACS 352
HYGC+VD+LGRAG L++A++ +P + + V+ LL AC
Sbjct: 369 LIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLK-PNAVIWGALLKACR 427
Query: 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412
H N+E+GE + ++ ++ +GG YV NI A ++ A RR+M E+ K PG
Sbjct: 428 IHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGC 487
Query: 413 SLV 415
S +
Sbjct: 488 STI 490
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/457 (33%), Positives = 240/457 (52%), Gaps = 79/457 (17%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF---DSFTYSFLIRTCVTL 81
+FNTL+ YS +D P + ++ ++ +R F DSF+++F+I+
Sbjct: 70 AFMFNTLVRGYSESDEPHNSVAVFVEM----------MRKGFVFPDSFSFAFVIKAVENF 119
Query: 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLV------ 135
G Q+H K G +SH++V T L+ MY G ++ + K+FDE+ + NLV
Sbjct: 120 RSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVI 179
Query: 136 -------------------------TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170
+WNVM+ G +K GELE A+ +F EMP R+ VSW+
Sbjct: 180 TACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWST 239
Query: 171 ILDGYTRMNRSNG----------ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
++ G N A P+E+++ VL A Q+G+ +++HG+ EK G
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 299
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
+ ++ + V+N LID Y++CG + A +FE + E++ +VSWTS+I+G AMHG G+ AV
Sbjct: 300 Y-SWIVSVNNALIDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTSMIAGLAMHGQGEEAVR 357
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
F M G+ P+ ++F+S+L+ACSH GL HYGC+VD+
Sbjct: 358 LFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLY 417
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GR+G+L++A +P T +V R LLGACS HGN+E+ E+V +++ E++ N GD
Sbjct: 418 GRSGKLQKAYDFICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDL 476
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VL+ N A G++ D +R+ M + K SLV
Sbjct: 477 VLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLV 513
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (618), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 236/437 (54%), Gaps = 61/437 (13%)
Query: 28 FNTLLHFYSLADSPKKAF---LLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
+NT++ +S +D K L Y+ + + P R FT+ +++ C
Sbjct: 93 WNTIIRGFSESDEDKALIAITLFYEMMSDEFVE---PNR-----FTFPSVLKACAKTGKI 144
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF-DELPERNLVT------- 136
G Q+H + K GF +V + LV MYV GF+KD+ LF + E+++V
Sbjct: 145 QEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204
Query: 137 ------WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----------MNR 180
WNVMI G ++ G+ + AR LF++M R+VVSW ++ GY+
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264
Query: 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240
P+ +T+++VLPAI + G++ + +H Y E G D+ + + LID Y+KCG
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-LGSALIDMYSKCG 323
Query: 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300
I A+ +FE + R+N+++W+++I+GFA+HG A++ F +M++ G++P+ V ++++
Sbjct: 324 IIEKAIHVFE--RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINL 381
Query: 301 LNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEI 338
L ACSHGGL HYGC+VD+LGR+G L++AE+ L +P +
Sbjct: 382 LTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441
Query: 339 TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398
DV+ + LLGAC GNVEMG+RV +++M + G YV + N+ A G + + +R
Sbjct: 442 DDVIW-KALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMR 500
Query: 399 RVMDERNALKFPGRSLV 415
M E++ K PG SL+
Sbjct: 501 LRMKEKDIRKDPGCSLI 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 149/443 (33%), Positives = 233/443 (52%), Gaps = 55/443 (12%)
Query: 12 HSHLLTTNSLLHHTL-----LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF 66
H + + +L H T+ LF ++ S+ +AFLLY QL S + P
Sbjct: 77 HGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLS------SEINP-- 128
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ FT+S L+++C T S G +H + K G YV T LV++Y G + + K+F
Sbjct: 129 NEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVF 184
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D +PER+LV+ MIT K G +E AR+LF+ M R++VSW ++DGY + N A
Sbjct: 185 DRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALM 244
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235
+P EIT++A L A Q GA+ + IH + + +++V LID
Sbjct: 245 LFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIR-LNVKVCTGLIDM 303
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKV-GLKPNR 294
Y+KCG + A+ +F D RK++V+W ++I+G+AMHG + A+ F MQ + GL+P
Sbjct: 304 YSKCGSLEEAVLVFND--TPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD 361
Query: 295 VTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIAL 332
+TF+ L AC+H GL HYGCLV +LGRAG+L++A +
Sbjct: 362 ITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIK 421
Query: 333 GIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392
+ + D V+ +LG+C HG+ +G+ + ++ + N G YVL+ NI A VG Y
Sbjct: 422 NMNMD-ADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYE 480
Query: 393 DAERLRRVMDERNALKFPGRSLV 415
++R +M E+ +K PG S +
Sbjct: 481 GVAKVRNLMKEKGIVKEPGISTI 503
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (601), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/423 (34%), Positives = 224/423 (52%), Gaps = 46/423 (10%)
Query: 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84
T L+N L+ Y + P ++ +LY L S LRP T++F+ + S
Sbjct: 47 TFLYNKLIQAYYVHHQPHESIVLYNLL------SFDGLRP--SHHTFNFIFAASASFSSA 98
Query: 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGL 144
LH+ + GF+S + T L+ Y LG L + ++FDE+ +R++ WN MITG
Sbjct: 99 RPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGY 158
Query: 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-----------STEPSEITI 193
+ G+++ A LF+ MP +NV SWT ++ G+++ + A S +P+ IT+
Sbjct: 159 QRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITV 218
Query: 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-IRVSNCLIDTYAKCGCIFSALKLFEDI 252
++VLPA G + + + GY + GF FD I V N I+ Y+KCG I A +LFE++
Sbjct: 219 VSVLPACANLGELEIGRRLEGYARENGF--FDNIYVCNATIEMYSKCGMIDVAKRLFEEL 276
Query: 253 SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309
+R NL SW S+I A HG A+ F +M + G KP+ VTF+ +L AC HGG+
Sbjct: 277 GNQR-NLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVK 335
Query: 310 -------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350
HYGC++D+LGR G+L++A + +P + D VV LLGA
Sbjct: 336 GQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMK-PDAVVWGTLLGA 394
Query: 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410
CSFHGNVE+ E + + ++E N G+ V+M NI A ++ R+R++M + K
Sbjct: 395 CSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAA 454
Query: 411 GRS 413
G S
Sbjct: 455 GYS 457
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 221/420 (52%), Gaps = 44/420 (10%)
Query: 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG 87
+N L++ Y +KA +YK ++ ++P D T L+ +C L N G
Sbjct: 225 WNCLINGYKKIGEAEKAIYVYKLMES------EGVKP--DDVTMIGLVSSCSMLGDLNRG 276
Query: 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW 147
+ + + + G + + + AL++M+ G + ++ ++FD L +R +V+W MI+G +
Sbjct: 277 KEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARC 336
Query: 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVL 197
G L+ +R LF++M ++VV W ++ G + R A +T+P EIT++ L
Sbjct: 337 GLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCL 396
Query: 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257
A Q GA+ IH Y EK + ++ + L+D YAKCG I AL +F I + +
Sbjct: 397 SACSQLGALDVGIWIHRYIEKYSL-SLNVALGTSLVDMYAKCGNISEALSVFHGI--QTR 453
Query: 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------- 309
N +++T+II G A+HG A+ F M G+ P+ +TF+ +L+AC HGG+
Sbjct: 454 NSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYF 513
Query: 310 --------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHG 355
HY +VD+LGRAG LE+A+++ +P E D V LL C HG
Sbjct: 514 SQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPME-ADAAVWGALLFGCRMHG 572
Query: 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
NVE+GE+ +K+LE++ + G YVL+ + + DA+R RR+M+ER K PG S +
Sbjct: 573 NVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 224/422 (53%), Gaps = 44/422 (10%)
Query: 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85
+FN L+ +S P KAF Y Q+ + S + P D+ T+ FLI+ +
Sbjct: 83 FVFNLLIRCFSTGAEPSKAFGFYTQMLK------SRIWP--DNITFPFLIKASSEMECVL 134
Query: 86 LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLV 145
+G Q H+ I + GFQ+ VYV +LV+MY + GF+ + ++F ++ R++V+W M+ G
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194
Query: 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILA 195
K G +E AR +F+EMP RN+ +W+ +++GY + N A +E +++
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255
V+ + GA+ + + Y K ++ + L+D + +CG I A+ +FE +
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTV-NLILGTALVDMFWRCGDIEKAIHVFEGLP-- 311
Query: 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL------ 309
+ +SW+SII G A+HG A+ F +M +G P VTF +VL+ACSHGGL
Sbjct: 312 ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLE 371
Query: 310 ----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353
HYGC+VDMLGRAG+L +AE L + + + + LLGAC
Sbjct: 372 IYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVK-PNAPILGALLGACKI 430
Query: 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRS 413
+ N E+ ERV +++++ + G YVL+ NI A G++ E LR +M E+ K PG S
Sbjct: 431 YKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWS 490
Query: 414 LV 415
L+
Sbjct: 491 LI 492
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 415 | ||||||
| 449459636 | 495 | PREDICTED: pentatricopeptide repeat-cont | 0.959 | 0.804 | 0.531 | 1e-129 | |
| 356506146 | 503 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.817 | 0.513 | 1e-129 | |
| 224123708 | 337 | predicted protein [Populus trichocarpa] | 0.732 | 0.902 | 0.688 | 1e-129 | |
| 225444407 | 470 | PREDICTED: pentatricopeptide repeat-cont | 0.966 | 0.853 | 0.565 | 1e-128 | |
| 147772248 | 538 | hypothetical protein VITISV_033453 [Viti | 0.951 | 0.734 | 0.566 | 1e-128 | |
| 356554965 | 517 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.793 | 0.509 | 1e-126 | |
| 255568986 | 337 | pentatricopeptide repeat-containing prot | 0.732 | 0.902 | 0.670 | 1e-125 | |
| 357469567 | 494 | Pentatricopeptide repeat-containing prot | 0.963 | 0.809 | 0.493 | 1e-121 | |
| 334182414 | 504 | pentatricopeptide repeat-containing prot | 0.992 | 0.817 | 0.507 | 1e-120 | |
| 147860607 | 610 | hypothetical protein VITISV_027522 [Viti | 0.915 | 0.622 | 0.560 | 1e-119 |
| >gi|449459636|ref|XP_004147552.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Cucumis sativus] gi|449484988|ref|XP_004157038.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/450 (53%), Positives = 304/450 (67%), Gaps = 52/450 (11%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHT----LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHS 58
+++ T +I S ++T+ LL+ T LL NTLLH Y L Y+ L+Q
Sbjct: 61 TTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPL----------YQPLRQF---- 106
Query: 59 HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 118
+ P +D+F YSFL+ +C L G QLHA+ K+GF SHVYV TA++ MY + GF
Sbjct: 107 -PRIPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGF 165
Query: 119 LKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178
L D+ K+FDE+P+R+ VTWNV+ITGLVK+GEL+ AR +F++MP R VVSWT I+DGYTR+
Sbjct: 166 LLDAMKVFDEMPDRSSVTWNVLITGLVKFGELKRARDVFDQMPMRTVVSWTAIIDGYTRL 225
Query: 179 NRSNGAS-----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227
NR A+ EP+E+T+L + PAI GA++ CQ +H Y EK+GF D+R
Sbjct: 226 NRHEEAAGLFWRMVAHFGMEPNEVTLLTIFPAISNLGALKLCQSVHAYAEKKGFKVSDVR 285
Query: 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287
++N LID YAKCGCI SA K+FE++S E KNLVSWTSIISGF MHGMGK A+E+FE M+K
Sbjct: 286 IANSLIDCYAKCGCINSASKVFEEMSAEIKNLVSWTSIISGFTMHGMGKEAMESFEIMEK 345
Query: 288 VGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLE 325
G +PNRVTFLS+++ACSHGGL HYG L+DMLGRAGR+E
Sbjct: 346 EGHEPNRVTFLSIVSACSHGGLVEEGLEFFEKMVAEYQIKPDIMHYGSLIDMLGRAGRIE 405
Query: 326 QAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385
+AEKIAL IP EI VV+ R LLGACSFHGNV M ERVT+++L ME GGDYVLM NI
Sbjct: 406 EAEKIALEIPKEIASVVIWRTLLGACSFHGNVSMAERVTQRILNMEGAYGGDYVLMSNIF 465
Query: 386 AGVGRYVDAERLRRVMDERNALKFPGRSLV 415
A G+Y DAER RR+MD K PG+SLV
Sbjct: 466 AAAGKYGDAERWRRLMDSSKFSKIPGQSLV 495
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/456 (51%), Positives = 308/456 (67%), Gaps = 45/456 (9%)
Query: 1 SPSSNNVTTRIHSHLLTTN---SLLHHTL----LFNTLLHFYSLADSPKKAFLLYKQLQQ 53
PS ++HSH++T+ + H+TL LFN ++ YS P +A + Q
Sbjct: 52 DPSQRQPLQQVHSHIITSGLFYNPFHNTLTCLLLFNNVIRCYSFGPYPHEALHFFTYTQ- 110
Query: 54 IYTHSHSPLR-PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112
H H+ L P D+F+++FL +Y + GTQLHA++ KVGFQ HVYV T L+ M
Sbjct: 111 ---HCHTFLTYPSLDTFSFAFLCHASANPNYTHFGTQLHALVFKVGFQFHVYVKTGLLQM 167
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
Y S G L +++++F E+ RNLV+WNV ITGL+KWGE+E A S+F +MP R+VVSWT ++
Sbjct: 168 YSSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKWGEVELACSVFNQMPARSVVSWTLVI 227
Query: 173 DGYTRMNRSNGAST-----------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
DGYTR N+ A T EP+E+T+L + PAI G ++ CQ +H Y EKRGF
Sbjct: 228 DGYTRRNQPIKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHVYVEKRGF 287
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
NAFD+R++N L+D YAKCGCI S + F++I +R+NLVSWTS ISGFAM+GMG+ A+E+
Sbjct: 288 NAFDVRITNALLDLYAKCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALES 347
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLG 319
FE M+K GL+PN VTFL VL+ACSHGGL HYGC++DMLG
Sbjct: 348 FESMEKTGLRPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHYGCVIDMLG 407
Query: 320 RAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379
RAGRLE+AEK+AL +P E+ + V+ R LLGACS H NVE+G+RVT K+LEMERG+GGDYV
Sbjct: 408 RAGRLEEAEKVALQVPHEVANAVMWRTLLGACSVHNNVEIGQRVTNKILEMERGHGGDYV 467
Query: 380 LMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
LM NIL GVGR+ DAERLR V+D+R A K PG S V
Sbjct: 468 LMSNILVGVGRFKDAERLREVIDKRIAFKLPGYSFV 503
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123708|ref|XP_002319146.1| predicted protein [Populus trichocarpa] gi|222857522|gb|EEE95069.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/337 (68%), Positives = 264/337 (78%), Gaps = 33/337 (9%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY+S G L D+ LFDE+P+RN+VTWNVMITGLVKWG+LE+A SLF+EMP +NVVSWTGI
Sbjct: 1 MYLSSGVLGDAMILFDEMPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGI 60
Query: 172 LDGYTRMNR-SNGAS----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
+DGY R N+ S G S +P+EITILA+LPAI G +++C LIHGY EKRG
Sbjct: 61 IDGYIRNNKYSEGLSLFRRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEKRG 120
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
FNAFDIRV+N +ID Y+KCGCI SA K FEDISVERKNLVSWTSIISGFAMHGM K AVE
Sbjct: 121 FNAFDIRVANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVE 180
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
FERM+K GLKPNRVTFLSVLNACSHGGL HYGC+VDML
Sbjct: 181 YFERMEKAGLKPNRVTFLSVLNACSHGGLVDEGLRCFYKMVNEHGVLPDIKHYGCVVDML 240
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GR GRLE+AE +AL IPSEI +VV+ R LLGACSFHGNVEMGERVTRK++EMERG GGDY
Sbjct: 241 GRTGRLEEAENMALEIPSEIVNVVIWRTLLGACSFHGNVEMGERVTRKIMEMERGYGGDY 300
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VLMYNI AG GRY DAERLR++M++RNA K PG SLV
Sbjct: 301 VLMYNIFAGAGRYEDAERLRKLMNKRNAFKLPGNSLV 337
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444407|ref|XP_002265471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/440 (56%), Positives = 306/440 (69%), Gaps = 39/440 (8%)
Query: 10 RIHSHLLTTNSLLH--HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
++HSHL+TT + H +N LL YSL P++AFLL++ L+ H + PL FD
Sbjct: 34 QLHSHLITTGAHSHCMDVTSWNVLLRHYSLGIFPQEAFLLFRHLR--LHHVYPPLS--FD 89
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
SF++SFL++ C L + G QLHA+ K+GF+ HVYV+T L+N+Y + G ++ ++FD
Sbjct: 90 SFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFD 149
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+P RN VTWNV ITGL KWGEL A SL +EMP VVSWT I+DGYTRMN+ A
Sbjct: 150 EMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALAL 209
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P+EIT+LA+ PAI GA+ CQLIH YGEK G NA DIR+ L+DTY
Sbjct: 210 FLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTY 269
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCGCI SA +F +I+ + +NLVSWTSIIS FAMHGM K A+ENFERMQK LKPNR+T
Sbjct: 270 AKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNRIT 329
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
FLSVLNACSHGGL HYGCL+DMLGRAGRL++AEK+AL I
Sbjct: 330 FLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEI 389
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P + +VV+ R LLGACSFHGNVEMG RVTRK+LEMER GGDYVL+ NI AGVGR+ D
Sbjct: 390 PDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFAGVGRFWDV 449
Query: 395 ERLRRVMDERNALKFPGRSL 414
ER+RR+MDERNA K PG S
Sbjct: 450 ERVRRLMDERNASKVPGLSF 469
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147772248|emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/434 (56%), Positives = 305/434 (70%), Gaps = 39/434 (8%)
Query: 10 RIHSHLLTTNSLLH--HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
++HSHL+TT + H +N LL YSL P++AFLL++ L+ H + PL FD
Sbjct: 34 QLHSHLITTGAHSHCMDVTSWNVLLRHYSLGIFPQEAFLLFRHLR--LHHVYPPL--SFD 89
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
SF++SFL++ C L + G QLHA+ K+GF+ HVYV+T L+N+Y + G ++ ++FD
Sbjct: 90 SFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFD 149
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+P RN VTWNV ITGL KWGEL ARSL +EMP VVSWT I+DGYTRMN+ A
Sbjct: 150 EMPVRNSVTWNVFITGLAKWGELHLARSLLDEMPMPTVVSWTTIIDGYTRMNQPKQALAL 209
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P+EIT+LA+ PAI GA+ CQLIH YGEK G NA DIR+ L+DTY
Sbjct: 210 FLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTY 269
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCGCI SA ++F +I + +NLVSWTSIIS FAMHGM K A+ENFERMQK LKPNR+T
Sbjct: 270 AKCGCIESASRVFGEIDAKSRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNRIT 329
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
FLSVLNACSHGGL HYGCL+DMLGRAGRL++AEK+AL I
Sbjct: 330 FLSVLNACSHGGLVEEGLKFFTKMVNKYQISPDVKHYGCLIDMLGRAGRLDEAEKMALEI 389
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394
P+ + +VV+ R LLGACSFHGNVEMG RVTRK+LEME+ GGDYVL+ NI AGVGR+ D
Sbjct: 390 PNYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMEKKYGGDYVLLSNIFAGVGRFWDV 449
Query: 395 ERLRRVMDERNALK 408
ER+RR+MDERNA K
Sbjct: 450 ERVRRLMDERNASK 463
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/455 (50%), Positives = 306/455 (67%), Gaps = 45/455 (9%)
Query: 2 PSSNNVTTRIHSHLLTTN---SLLHHTL----LFNTLLHFYSLADSPKKAFLLYKQLQQI 54
PS ++HSH++T+ + H+TL LFN ++ YS P +A + Q
Sbjct: 67 PSQRQPLQQVHSHIITSGLFYNPFHNTLTCLLLFNNVIRCYSFGPYPHEALHFFTYTQ-- 124
Query: 55 YTHSHSPLR-PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY 113
H H L P D+F+++FL +Y + GTQLHA+I KVGFQ VYV T L+ MY
Sbjct: 125 --HCHIFLTYPSLDTFSFAFLCHASANPNYTHFGTQLHALIFKVGFQFQVYVQTRLLQMY 182
Query: 114 VSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD 173
S G L +++++F E+ RNLV+WNV ITGL+K GE+E A S+F +MP R+VVSWT ++D
Sbjct: 183 SSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKLGEVELACSVFNQMPARSVVSWTLVID 242
Query: 174 GYTRMNRSNGAST-----------EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222
GYTR N+ A T EP+E+T+L + PAI G ++ CQ +HGY EKRGFN
Sbjct: 243 GYTRRNQPIKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHGYVEKRGFN 302
Query: 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282
AFD+R++N L+D YAKCGCI S + F++I +R+NLVSWTS ISGFAM+GMG+ A+E+F
Sbjct: 303 AFDVRITNALLDLYAKCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESF 362
Query: 283 ERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGR 320
E M+K GL+PN VTFL VL+ACSHGGL HYGC++DMLGR
Sbjct: 363 ESMEKAGLRPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHYGCVIDMLGR 422
Query: 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380
AGRLE+AEKIAL +P E+ + V+ R LLGAC+ H NVE+G+RVT K+LEMERG+GGDYVL
Sbjct: 423 AGRLEEAEKIALQVPHEVANAVMWRTLLGACNVHNNVEIGQRVTNKILEMERGHGGDYVL 482
Query: 381 MYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
M NIL GVGR+ DAE+LR ++D+R A K PG S V
Sbjct: 483 MSNILVGVGRFKDAEKLREMIDKRIAFKLPGYSFV 517
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568986|ref|XP_002525463.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535276|gb|EEF36953.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/337 (67%), Positives = 261/337 (77%), Gaps = 33/337 (9%)
Query: 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171
MY++ GFL ++ FDE+PE+N VTWNVMITGLVKWG+LE+ARS F++MP +NVVSWTGI
Sbjct: 1 MYLASGFLGNALLAFDEMPEKNSVTWNVMITGLVKWGKLEFARSFFDDMPEKNVVSWTGI 60
Query: 172 LDGYTRMNR-SNGAS----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220
+DGY RMNR + G + PSEITILA+LPAI G ++NC LIH EKRG
Sbjct: 61 IDGYVRMNRITEGLALFRRMVSFEGIAPSEITILAILPAISGIGELQNCGLIHCLVEKRG 120
Query: 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280
FN+ DIRV+N +IDTYAKCGCI SA + FE+ISVERKNLVSWTSIISGFAMHGMG+ AV+
Sbjct: 121 FNSSDIRVTNSIIDTYAKCGCIVSASRFFEEISVERKNLVSWTSIISGFAMHGMGQEAVK 180
Query: 281 NFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDML 318
FE M++ GLKPNRVTFLSVLNACSHGGL HYGCLVDML
Sbjct: 181 RFENMERTGLKPNRVTFLSVLNACSHGGLVAEGHEFFEKMVNQYSILPDIKHYGCLVDML 240
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
GR GRLE+AEK+ALGIPSEI + V+ R LLGACSFHGN E+GERVTRK++EMERG GGDY
Sbjct: 241 GRTGRLEEAEKLALGIPSEIVNAVIWRTLLGACSFHGNSEIGERVTRKIMEMERGYGGDY 300
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VLMYNI AGVGR+ DAERLR +MDERNA K PG SLV
Sbjct: 301 VLMYNIFAGVGRFEDAERLRVLMDERNAFKVPGHSLV 337
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/448 (49%), Positives = 297/448 (66%), Gaps = 48/448 (10%)
Query: 10 RIHSHLLTTNSLLHH---------TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60
++HS ++T+ SL HH LLFN L+ YSL+ P ++ + THS S
Sbjct: 53 QLHSQIITS-SLFHHYPFHNNLTSLLLFNNLIRSYSLSLFPHESLKFFTHTLNNLTHSLS 111
Query: 61 PLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120
DSFT +FL C L + G LH ++ K+GF++HV+V T L++MY + GFL
Sbjct: 112 -----LDSFTLTFLAHACANLDTTHFGFHLHCIVCKMGFENHVFVQTGLLHMYSNWGFLV 166
Query: 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180
D++++F E+P+RN VTWNV I+GL+KWG+LE+ARS+F+ M R+VVSWT ++DGYTRMN+
Sbjct: 167 DAAQVFGEMPDRNTVTWNVFISGLIKWGQLEFARSVFDRMVVRSVVSWTLVIDGYTRMNK 226
Query: 181 SNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229
A EP+E+T+L V PAI G V+ C+ +HGY EKRGFNA DIR+
Sbjct: 227 PLKALALFRKMIEVDGIEPNEVTLLTVFPAIAHLGNVKMCESVHGYVEKRGFNAVDIRIV 286
Query: 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289
N LID YAKCGCI SA LF ++ R+N VSW S++SG+A GM + AV+ FE+M+K G
Sbjct: 287 NALIDLYAKCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMVREAVDTFEKMEKAG 346
Query: 290 LKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQA 327
++PN V FLS+L+ACSH GL HYGC++DMLGRAGRL +A
Sbjct: 347 VRPNHVAFLSILSACSHSGLVEEGLEFFGKMVNDYGLVPDIKHYGCVIDMLGRAGRLGEA 406
Query: 328 EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387
EK+AL +P E + V+ R LLGACS H NVE+G+RVT+K+LEME+G+GGDYVLM NI A
Sbjct: 407 EKVALEVPHEAANDVIWRTLLGACSVHDNVEIGKRVTKKILEMEKGHGGDYVLMSNIFAS 466
Query: 388 VGRYVDAERLRRVMDERNALKFPGRSLV 415
VGR+ D ERLR ++D+RN K PG S+V
Sbjct: 467 VGRFKDVERLREMIDKRNVFKLPGYSIV 494
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182414|ref|NP_172393.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75116771|sp|Q680Z7.1|PPR24_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09220, mitochondrial; Flags: Precursor gi|51969004|dbj|BAD43194.1| hypothetical protein [Arabidopsis thaliana] gi|51969582|dbj|BAD43483.1| hypothetical protein [Arabidopsis thaliana] gi|51969876|dbj|BAD43630.1| hypothetical protein [Arabidopsis thaliana] gi|62318861|dbj|BAD93927.1| hypothetical protein [Arabidopsis thaliana] gi|332190294|gb|AEE28415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/457 (50%), Positives = 293/457 (64%), Gaps = 45/457 (9%)
Query: 3 SSNNVTTRIHSHLLTTNSLLHHT-------LLFNTLLHFYSLADSPKKAFLLYKQLQQI- 54
S+ + ++HSH T+ LL H LFN LL YSL ++P A+ LY QLQ++
Sbjct: 48 SNLKIIHQLHSHFTTSGFLLLHQKQNSGKLFLFNPLLRCYSLGETPLHAYFLYDQLQRLH 107
Query: 55 YTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS--KVGFQSHVYVNTALVNM 112
+ H+ P FDSFTY FL++ +P+L + K+GF+SHVYV TALV M
Sbjct: 108 FLSDHNKSLPPFDSFTYLFLLKASSNPRFPSLLLGIGLHGLTLKLGFESHVYVQTALVGM 167
Query: 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIL 172
Y+ G + D+ K+FDE+PERN VTWNVMITGL G+ E A E+MP R VVSWT I+
Sbjct: 168 YLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTII 227
Query: 173 DGYTRMNRSNGA-----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF 221
DGY R+++ A + +P+EITILA+LPA+W G ++ C +H Y KRGF
Sbjct: 228 DGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGF 287
Query: 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVEN 281
DIRV+N LID YAKCGCI SA K F +I RKNLVSWT++IS FA+HGMGK AV
Sbjct: 288 VPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSM 347
Query: 282 FERMQKVGLKPNRVTFLSVLNACSHGGL-----------------------HYGCLVDML 318
F+ M+++GLKPNRVT +SVLNACSHGGL HYGCLVDML
Sbjct: 348 FKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDML 407
Query: 319 GRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378
R GRLE+AEKIAL IP E VV R+LLGACS + + E+ ERVTRK++E+ER +GGDY
Sbjct: 408 RRKGRLEEAEKIALEIPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDY 466
Query: 379 VLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
VLM NI G GR++DA+R R+ MD R K PG S V
Sbjct: 467 VLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHSQV 503
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147860607|emb|CAN79717.1| hypothetical protein VITISV_027522 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/419 (56%), Positives = 289/419 (68%), Gaps = 39/419 (9%)
Query: 10 RIHSHLLTTNSLLH--HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD 67
++HSHL+TT + H +N LL YSL P++AFLL++ L+ H + PL FD
Sbjct: 34 QLHSHLITTGAHSHCMDVTSWNVLLRHYSLGIFPQEAFLLFRHLR--LHHVYPPLS--FD 89
Query: 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFD 127
SF++SFL++ C L + G QLHA+ K+GF+ HVYV+T L+N+Y + G ++ ++FD
Sbjct: 90 SFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFD 149
Query: 128 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA--- 184
E+P RN VTWNV ITGL KWGEL A SL +EMP VVSWT I+DGYTRMN+ A
Sbjct: 150 EMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALAL 209
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P+EIT+LA+ PAI GA+ CQLIH YGEK G NA DIR+ L+DTY
Sbjct: 210 FLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTY 269
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
AKCGCI SA +F +I+ + +NLVSWTSIIS FAMHGM K A+ENFERMQK LKPNR+T
Sbjct: 270 AKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNRIT 329
Query: 297 FLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGI 334
FLSVLNACSHGGL HYGCL+DMLGRAGRL++AEK+AL I
Sbjct: 330 FLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEI 389
Query: 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393
P + +VV+ R LLGACSFHGNVEMG RVTRK+LEMER GGDYVL+ NI AGVGR D
Sbjct: 390 PDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFAGVGRIKD 448
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 415 | ||||||
| TAIR|locus:2161018 | 530 | AT5G56310 "AT5G56310" [Arabido | 0.638 | 0.5 | 0.389 | 2e-65 | |
| TAIR|locus:2006927 | 538 | AT1G33350 [Arabidopsis thalian | 0.585 | 0.451 | 0.360 | 8.8e-57 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.585 | 0.327 | 0.330 | 8.6e-56 | |
| TAIR|locus:2198678 | 500 | PDE247 "pigment defective 247" | 0.571 | 0.474 | 0.351 | 1.6e-55 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.636 | 0.387 | 0.305 | 4.8e-55 | |
| TAIR|locus:2195296 | 484 | AT1G09190 "AT1G09190" [Arabido | 0.575 | 0.493 | 0.342 | 6.1e-54 | |
| TAIR|locus:2159238 | 499 | AT5G61800 "AT5G61800" [Arabido | 0.575 | 0.478 | 0.367 | 2e-53 | |
| TAIR|locus:2010012 | 474 | AT1G13410 "AT1G13410" [Arabido | 0.484 | 0.424 | 0.372 | 1.3e-51 | |
| TAIR|locus:2206164 | 570 | AT1G31430 [Arabidopsis thalian | 0.573 | 0.417 | 0.346 | 5.8e-51 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.486 | 0.312 | 0.336 | 9.4e-51 |
| TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
Identities = 111/285 (38%), Positives = 165/285 (57%)
Query: 36 SLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS 95
SL D P + ++++ P D+FT+ F+++ V +S G Q+H +
Sbjct: 89 SLLDEPNAHSIAITVYRKLWALCAKP-----DTFTFPFVLKIAVRVSDVWFGRQIHGQVV 143
Query: 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARS 155
GF S V+V T L+ MY S G L D+ K+FDE+ +++ WN ++ G K GE++ ARS
Sbjct: 144 VFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARS 203
Query: 156 LFEEMPC--RNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQN 203
L E MPC RN VSWT ++ GY + R++ A + EP E+T+LAVL A
Sbjct: 204 LLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADL 263
Query: 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263
G++ + I Y + RG N + ++N +ID YAK G I AL +FE V +N+V+WT
Sbjct: 264 GSLELGERICSYVDHRGMNRA-VSLNNAVIDMYAKSGNITKALDVFE--CVNERNVVTWT 320
Query: 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308
+II+G A HG G A+ F RM K G++PN VTF+++L+ACSH G
Sbjct: 321 TIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVG 365
|
|
| TAIR|locus:2006927 AT1G33350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 94/261 (36%), Positives = 151/261 (57%)
Query: 64 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDS 122
P + F Y ++++ LS +H + K GF +V V TAL++ Y S + + +
Sbjct: 122 PRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLA 181
Query: 123 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR----- 177
+LFDE+ ERN+V+W M++G + G++ A +LFE+MP R+V SW IL T+
Sbjct: 182 RQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFL 241
Query: 178 -----MNRS-NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231
R N S P+E+T++ VL A Q G ++ + IH + +R ++ D+ VSN
Sbjct: 242 EAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSS-DVFVSNS 300
Query: 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL- 290
L+D Y KCG + A +F+ S +K+L +W S+I+ FA+HG + A+ FE M K+ +
Sbjct: 301 LVDLYGKCGNLEEASSVFKMAS--KKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIN 358
Query: 291 --KPNRVTFLSVLNACSHGGL 309
KP+ +TF+ +LNAC+HGGL
Sbjct: 359 DIKPDHITFIGLLNACTHGGL 379
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 8.6e-56, Sum P(2) = 8.6e-56
Identities = 85/257 (33%), Positives = 150/257 (58%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+S+T+ F++++C G Q+H + K+G +YV+T+L++MYV G L+D+ K+F
Sbjct: 133 NSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVF 192
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D+ P R++V++ +I G G +E A+ LF+E+P ++VVSW ++ GY A
Sbjct: 193 DKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 252
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+ P E T++ V+ A Q+G++ + +H + + GF + ++++ N LID Y
Sbjct: 253 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGS-NLKIVNALIDLY 311
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+KCG + +A LFE + K+++SW ++I G+ + K A+ F+ M + G PN VT
Sbjct: 312 SKCGELETACGLFERLPY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 369
Query: 297 FLSVLNACSH-GGLHYG 312
LS+L AC+H G + G
Sbjct: 370 MLSILPACAHLGAIDIG 386
|
|
| TAIR|locus:2198678 PDE247 "pigment defective 247" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 89/253 (35%), Positives = 141/253 (55%)
Query: 70 TYSFLIRTC--VTLSYPNLGTQLHAVISKVGF-QSHVYVNTALVNMYVSLGFLKDSSKLF 126
T+ L+ C T LG LH K+G ++HV V TA++ MY G K + +F
Sbjct: 73 TFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVF 132
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
D + ++N VTWN MI G ++ G+++ A +F++MP R+++SWT +++G+ + A
Sbjct: 133 DYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALL 192
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236
+P + I+A L A GA+ +H Y + F ++RVSN LID Y
Sbjct: 193 WFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKN-NVRVSNSLIDLY 251
Query: 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296
+CGC+ A ++F ++E++ +VSW S+I GFA +G ++ F +MQ+ G KP+ VT
Sbjct: 252 CRCGCVEFARQVF--YNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVT 309
Query: 297 FLSVLNACSHGGL 309
F L ACSH GL
Sbjct: 310 FTGALTACSHVGL 322
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 374 (136.7 bits), Expect = 4.8e-55, Sum P(2) = 4.8e-55
Identities = 87/285 (30%), Positives = 150/285 (52%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI 94
Y +KA +YK ++ ++P D T L+ +C L N G + + +
Sbjct: 232 YKKIGEAEKAIYVYKLMES------EGVKP--DDVTMIGLVSSCSMLGDLNRGKEFYEYV 283
Query: 95 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154
+ G + + + AL++M+ G + ++ ++FD L +R +V+W MI+G + G L+ +R
Sbjct: 284 KENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSR 343
Query: 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGA----------STEPSEITILAVLPAIWQNG 204
LF++M ++VV W ++ G + R A +T+P EIT++ L A Q G
Sbjct: 344 KLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLG 403
Query: 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 264
A+ IH Y EK + ++ + L+D YAKCG I AL +F I + +N +++T+
Sbjct: 404 ALDVGIWIHRYIEKYSLS-LNVALGTSLVDMYAKCGNISEALSVFHGI--QTRNSLTYTA 460
Query: 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
II G A+HG A+ F M G+ P+ +TF+ +L+AC HGG+
Sbjct: 461 IIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGM 505
|
|
| TAIR|locus:2195296 AT1G09190 "AT1G09190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 87/254 (34%), Positives = 139/254 (54%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
D +TY+ L+++C +LS G +H + + GF + +V +Y S G + D+ K+F
Sbjct: 101 DEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVF 160
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA-- 184
DE+ ERN+V WN+MI G G++E LF++M R++VSW ++ ++ R A
Sbjct: 161 DEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALE 220
Query: 185 --------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDT 235
+P E T++ VLP G + + IH E G F F I V N L+D
Sbjct: 221 LFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDF-ITVGNALVDF 279
Query: 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG-LKPNR 294
Y K G + +A +F ++R+N+VSW ++ISG A++G G+ ++ F+ M + G + PN
Sbjct: 280 YCKSGDLEAATAIFR--KMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNE 337
Query: 295 VTFLSVLNACSHGG 308
TFL VL CS+ G
Sbjct: 338 ATFLGVLACCSYTG 351
|
|
| TAIR|locus:2159238 AT5G61800 "AT5G61800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 94/256 (36%), Positives = 144/256 (56%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGT--QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
D T+ F+ + C +L LH + G S ++ L+ +Y + + + +
Sbjct: 114 DFHTFPFVFKACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQ 173
Query: 125 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA 184
LFDE P+R++VT+NV+I GLVK E+ AR LF+ MP R++VSW ++ GY +MN A
Sbjct: 174 LFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREA 233
Query: 185 ----------STEPSEITILAVLPAIWQNGAVRNCQLIHGYGE-KRGFNAFDIRVSNCLI 233
+P + I++ L A Q+G + + IH Y + KR F D ++ L+
Sbjct: 234 IKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLF--IDSFLATGLV 291
Query: 234 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293
D YAKCG I +A+++FE S K L +W ++I+G AMHG G+ V+ F +M G+KP+
Sbjct: 292 DFYAKCGFIDTAMEIFELCS--DKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPD 349
Query: 294 RVTFLSVLNACSHGGL 309
VTF+SVL CSH GL
Sbjct: 350 GVTFISVLVGCSHSGL 365
|
|
| TAIR|locus:2010012 AT1G13410 "AT1G13410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 395 (144.1 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 80/215 (37%), Positives = 131/215 (60%)
Query: 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
NT +++ Y+ +G + ++ LFD++P R++++WN ++ G G++E +F++MP RNV
Sbjct: 94 NT-MISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNV 152
Query: 166 VSWTGILDGYTRMNRSN---GA--------STEPSEITILAVLPAIWQNGAVRNCQLIHG 214
SW G++ GY + R + G+ S P++ T+ VL A + GA + +H
Sbjct: 153 FSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHK 212
Query: 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274
YGE G+N D+ V N LID Y KCG I A+++F+ I +R++L+SW ++I+G A HG
Sbjct: 213 YGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGI--KRRDLISWNTMINGLAAHGH 270
Query: 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
G A+ F M+ G+ P++VTF+ VL AC H GL
Sbjct: 271 GTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGL 305
|
|
| TAIR|locus:2206164 AT1G31430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 5.8e-51, Sum P(2) = 5.8e-51
Identities = 88/254 (34%), Positives = 139/254 (54%)
Query: 66 FDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 125
FD T + C L +G +++ + F+ V + ALV+M+ G L + +
Sbjct: 146 FDEGTIVSTLSACSALKNLEIGERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAV 204
Query: 126 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA- 184
FD + ++N+ W M+ G V G ++ AR LFE P ++VV WT +++GY + NR + A
Sbjct: 205 FDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEAL 264
Query: 185 ---------STEPSEITILAVLPAIWQNGAVRNCQLIHGY-GEKRGFNAFDIRVSNCLID 234
P ++++L Q GA+ + IHGY E R D V L+D
Sbjct: 265 ELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRV--TVDKVVGTALVD 322
Query: 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294
YAKCGCI +AL++F +I ER + SWTS+I G AM+GM A++ + M+ VG++ +
Sbjct: 323 MYAKCGCIETALEVFYEIK-ER-DTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDA 380
Query: 295 VTFLSVLNACSHGG 308
+TF++VL AC+HGG
Sbjct: 381 ITFVAVLTACNHGG 394
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 335 (123.0 bits), Expect = 9.4e-51, Sum P(2) = 9.4e-51
Identities = 73/217 (33%), Positives = 128/217 (58%)
Query: 104 YVNTALVNMYVSLGFLKDSSKLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162
++ A V Y ++ KD + D + +V WNVMI G ++ G+ + AR LF++M
Sbjct: 178 FMKDARVLFYKNI-IEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQ 236
Query: 163 RNVVSWTGILDGYTR----------MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212
R+VVSW ++ GY+ P+ +T+++VLPAI + G++ + +
Sbjct: 237 RSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWL 296
Query: 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272
H Y E G D+ + + LID Y+KCG I A+ +FE + R+N+++W+++I+GFA+H
Sbjct: 297 HLYAEDSGIRIDDV-LGSALIDMYSKCGIIEKAIHVFERLP--RENVITWSAMINGFAIH 353
Query: 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309
G A++ F +M++ G++P+ V ++++L ACSHGGL
Sbjct: 354 GQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGL 390
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q680Z7 | PPR24_ARATH | No assigned EC number | 0.5076 | 0.9927 | 0.8174 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 415 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-55 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-51 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-34 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-30 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-25 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 2e-55
Identities = 122/407 (29%), Positives = 190/407 (46%), Gaps = 77/407 (18%)
Query: 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100
P KA Y ++Q + SP D T + ++ C L ++G +LH + + G
Sbjct: 370 PDKALETYALMEQ---DNVSP-----DEITIASVLSACACLGDLDVGVKLHELAERKGLI 421
Query: 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160
S+V V AL+ MY K D+ A +F +
Sbjct: 422 SYVVVANALIEMY-------SKCKCIDK------------------------ALEVFHNI 450
Query: 161 PCRNVVSWTGILDGYTRMNRSNGA---------STEPSEITILAVLPAIWQNGAVRNCQL 211
P ++V+SWT I+ G NR A + +P+ +T++A L A + GA+ +
Sbjct: 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510
Query: 212 IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271
IH + + G FD + N L+D Y +CG + A F + K++VSW +++G+
Sbjct: 511 IHAHVLRTGI-GFDGFLPNALLDLYVRCGRMNYAWNQF---NSHEKDVVSWNILLTGYVA 566
Query: 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL---------------------- 309
HG G AVE F RM + G+ P+ VTF+S+L ACS G+
Sbjct: 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626
Query: 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVL 368
HY C+VD+LGRAG+L +A +P IT D V LL AC H +VE+GE + +
Sbjct: 627 HYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLNACRIHRHVELGELAAQHIF 684
Query: 369 EMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415
E++ + G Y+L+ N+ A G++ + R+R+ M E PG S V
Sbjct: 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 6e-51
Identities = 118/379 (31%), Positives = 181/379 (47%), Gaps = 55/379 (14%)
Query: 38 ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV 97
A + ++AF L++++ + S + R T+ ++R L G QLH + K
Sbjct: 202 AGNYREAFALFREMWEDG--SDAEPR------TFVVMLRASAGLGSARAGQQLHCCVLKT 253
Query: 98 GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLF 157
G +V+ AL++MY G ++D+ +FD +PE+ V WN M+ G G E A L+
Sbjct: 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLY 313
Query: 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217
EM + VS +D +T S + LA+L Q A LI
Sbjct: 314 YEM-RDSGVS----IDQFT-------FSIMIRIFSRLALLEHAKQAHA----GLI----- 352
Query: 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277
+ GF DI + L+D Y+K G + A +F+ + RKNL+SW ++I+G+ HG G
Sbjct: 353 RTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTK 409
Query: 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLV 315
AVE FERM G+ PN VTFL+VL+AC + GL HY C++
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469
Query: 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375
++LGR G L++A + P V + LL AC H N+E+G K+ M
Sbjct: 470 ELLGREGLLDEAYAMIRRAPF-KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528
Query: 376 GDYVLMYNILAGVGRYVDA 394
+YV++ N+ GR +A
Sbjct: 529 NNYVVLLNLYNSSGRQAEA 547
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-34
Identities = 92/319 (28%), Positives = 149/319 (46%), Gaps = 50/319 (15%)
Query: 62 LRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121
+RP D +T+ ++RTC + G ++HA + + GF+ V V AL+ MYV G +
Sbjct: 183 VRP--DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 122 SSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181
+ +FD +P R+ ++WN MI+G + GE LF M
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM--------------------- 279
Query: 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241
S +P +TI +V+ A G R + +HGY K GF A D+ V N LI Y G
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF-AVDVSVCNSLIQMYLSLGS 338
Query: 242 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301
A K+F +E K+ VSWT++ISG+ +G+ A+E + M++ + P+ +T SVL
Sbjct: 339 WGEAEKVFS--RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
Query: 302 NACSHGG-------LH--------------YGCLVDMLGRAGRLEQAEKIALGIPSEITD 340
+AC+ G LH L++M + +++A ++ IP + D
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--D 454
Query: 341 VVV-RRILLGACSFHGNVE 358
V+ I+ G + E
Sbjct: 455 VISWTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 1e-30
Identities = 90/322 (27%), Positives = 140/322 (43%), Gaps = 51/322 (15%)
Query: 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126
+ TY L+ C+ L ++ + GF+ Y+ ++ M+V G L D+ +LF
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
Query: 127 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186
DE+PERNL +W +I GLV G A +LF EM W D R
Sbjct: 182 DEMPERNLASWGTIIGGLVDAGNYREAFALFREM-------WEDGSDAEPRT-------- 226
Query: 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246
+ +L A G+ R Q +H K G D VS LID Y+KCG I A
Sbjct: 227 ------FVVMLRASAGLGSARAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDAR 279
Query: 247 KLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
+F+ + K V+W S+++G+A+HG + A+ + M+ G+ ++ TF ++ S
Sbjct: 280 CVFD--GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337
Query: 307 GGL-------HYG--------------CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345
L H G LVD+ + GR+E A + +P +++
Sbjct: 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWN 395
Query: 346 ILLGACSFHGN----VEMGERV 363
L+ HG VEM ER+
Sbjct: 396 ALIAGYGNHGRGTKAVEMFERM 417
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 4e-25
Identities = 81/320 (25%), Positives = 137/320 (42%), Gaps = 49/320 (15%)
Query: 35 YSLADSPKKAFLLYKQLQQIYTH--SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHA 92
++S +A + QL+Q S LR D Y L R C G+++ +
Sbjct: 51 THDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCS 110
Query: 93 VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152
V + A+++M+V G L + +F ++PER+L +WNV++ G K G +
Sbjct: 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDE 170
Query: 153 ARSLFEEMPCRNVVSWTGIL-DGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQL 211
A L+ M W G+ D YT P + +P G +
Sbjct: 171 ALCLYHRM------LWAGVRPDVYTF----------PCVLRTCGGIPD-LARG-----RE 208
Query: 212 IHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271
+H + + GF D+ V N LI Y KCG + SA +F+ + R++ +SW ++ISG+
Sbjct: 209 VHAHVVRFGF-ELDVDVVNALITMYVKCGDVVSARLVFD--RMPRRDCISWNAMISGYFE 265
Query: 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG-------LH-------------- 310
+G +E F M+++ + P+ +T SV++AC G +H
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325
Query: 311 YGCLVDMLGRAGRLEQAEKI 330
L+ M G +AEK+
Sbjct: 326 CNSLIQMYLSLGSWGEAEKV 345
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 2e-09
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306
++V++ ++I G+ G + A++ F M+K G+KPN T+ +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 1e-07
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGILDGY 175
++VT+N +I G K G++E A LF EM R NV +++ ++DG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 1e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNV 165
VT+N +I+G K G+LE A LF+EM + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 4e-05
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVV 166
VT+N +I GL K G +E A LF+EM R +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 6e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 131 ERNLVTWNVMITGLVKWGELEYARSLFEEMP 161
+ ++VT+N +I GL + G ++ A L +EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.001
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGL 290
V++ S+ISG+ G + A+E F+ M++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 415 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.63 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.56 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.53 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.43 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.42 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.3 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.28 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.24 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.23 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.14 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.1 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.04 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.03 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.01 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.01 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.98 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.97 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.95 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.92 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.92 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.86 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.82 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.82 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.79 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.76 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.74 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.74 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.73 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.71 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.69 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.67 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.65 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.62 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.56 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.55 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.53 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.51 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.49 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.49 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.46 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.44 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.44 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.42 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.41 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.4 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.29 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.28 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.28 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.23 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.18 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.14 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.1 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.09 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.08 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.08 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.01 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.98 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.96 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.94 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.88 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.88 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.85 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.8 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.78 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.78 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.78 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.77 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.77 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.77 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.76 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.73 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.72 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.69 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.69 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.67 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.66 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.65 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.62 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.61 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.6 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.6 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.59 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.57 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.53 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.52 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.5 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.47 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.46 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.45 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.42 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.42 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.38 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.38 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.34 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.29 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.28 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.24 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.18 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.17 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.16 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.16 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.13 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.08 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.08 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.03 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.02 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.02 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.96 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.93 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.9 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.83 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.79 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.76 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.73 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.69 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.67 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.48 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.47 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.46 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.41 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.39 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.34 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.3 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.28 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.15 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.04 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.02 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.0 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.89 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.83 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.78 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.73 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.6 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.59 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.56 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.42 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.37 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.33 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.23 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 95.19 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.16 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.13 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.0 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.99 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.89 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.75 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.75 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.74 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.63 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.48 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.47 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.4 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.38 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.21 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.12 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.0 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.92 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.87 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 93.84 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.83 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.8 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.8 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.72 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.42 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.41 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.39 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.31 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 93.24 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.19 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.15 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.04 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.0 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.9 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.9 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.89 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.77 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.71 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.7 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.54 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.49 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 92.38 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.35 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.28 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.94 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.86 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.86 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.83 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.61 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.59 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.57 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.46 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.44 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.33 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.22 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.02 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.92 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.9 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 90.86 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.25 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.99 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.97 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.91 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.71 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.65 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.24 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.22 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.91 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.91 | |
| KOG1498 | 439 | consensus 26S proteasome regulatory complex, subun | 88.63 | |
| PF14669 | 233 | Asp_Glu_race_2: Putative aspartate racemase | 88.6 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.58 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.33 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 88.18 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.12 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 88.09 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 88.06 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.06 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.73 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.6 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.38 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.09 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.99 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.52 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.86 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 85.77 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.65 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 85.46 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.2 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 85.15 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.09 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.96 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 84.8 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.21 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.98 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 83.82 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 83.33 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.06 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.94 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.57 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.53 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.23 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 81.85 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 81.09 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.83 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.71 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.59 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.51 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.2 | |
| KOG4521 | 1480 | consensus Nuclear pore complex, Nup160 component [ | 80.2 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=482.08 Aligned_cols=401 Identities=24% Similarity=0.405 Sum_probs=333.4
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
+.+..|.++|.++...+++.||..+|+.++.+|++.++++.|.+++..|. ..|+. | |..+|+.++..|++.|
T Consensus 101 g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~---~~g~~--~---~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE---SSGFE--P---DQYMMNRVLLMHVKCG 172 (697)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCC--c---chHHHHHHHHHHhcCC
Confidence 44555555555555544455555555555555555555555555555555 55555 4 5555555555555555
Q ss_pred CCchHHHHHHHH-------------------------------HHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC-
Q 039757 83 YPNLGTQLHAVI-------------------------------SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP- 130 (415)
Q Consensus 83 ~~~~a~~~~~~~-------------------------------~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~- 130 (415)
+++.|.++|+.| .+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.
T Consensus 173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 555555555554 444444444444444444444444444444443333
Q ss_pred ---CCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc----------CCCchHHHHhHH
Q 039757 131 ---ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS----------TEPSEITILAVL 197 (415)
Q Consensus 131 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~----------~~~~~~~~~~ll 197 (415)
.+|..+||+||.+|++.|++++|.++|++|.++|+++||++|.+|++.|+.++|. ..||..||+.++
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2567788999999999999999999999999999999999999999999999998 789999999999
Q ss_pred HHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHH
Q 039757 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 277 (415)
.+|++.|+++.|.+++..|.+.|..| +..+|++|+++|++.|++++|.++|++|.+ ||..+||+||.+|+++|+.++
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999776 999999999999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHccCCc----------------------chHHHHHHhHhcCCHHHHHHHHhcCC
Q 039757 278 AVENFERMQKVGLKPNRVTFLSVLNACSHGGL----------------------HYGCLVDMLGRAGRLEQAEKIALGIP 335 (415)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------------~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (415)
|.++|++|.+.|+.||..||+.++.+|++.|. +|+.++++|++.|++++|.+++++|.
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999987 79999999999999999999999998
Q ss_pred CCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCCCCCCC
Q 039757 336 SEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415 (415)
Q Consensus 336 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 415 (415)
.. |+..+|++|+.+|...|+++.|..+++++.+.+|.+..+|..|+.+|++.|++++|.+++++|.+.|+++.||||||
T Consensus 490 ~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 490 FK-PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 76 99999999999999999999999999999999998999999999999999999999999999999999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=474.36 Aligned_cols=395 Identities=29% Similarity=0.502 Sum_probs=373.4
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++.+.++++|..+.+.| +.||+.+||.+|.+|++.|++++|.++|+.|. . | |..+|+++|.+|++.|
T Consensus 302 g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~--~---d~~s~n~li~~~~~~g 368 (857)
T PLN03077 302 GDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-------T--K---DAVSWTAMISGYEKNG 368 (857)
T ss_pred CChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-------C--C---CeeeHHHHHHHHHhCC
Confidence 46677788888887777 78888888888888999999999999998886 2 5 8889999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
++++|.++|+.|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+ ++..+||+||.+|++.|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998874 788999999999999999999999999
Q ss_pred hCCCCChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHH
Q 039757 159 EMPCRNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229 (415)
Q Consensus 159 ~m~~~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (415)
+|.++|+.+|+++|.+|++.|+.++|. ..||..||+.++.+|++.|+.+.+.+++..+.+.|+.+ +..++
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~ 527 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF-DGFLP 527 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc-cceec
Confidence 999999999999999999999998887 68999999999999999999999999999999999877 99999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
++|+++|+++|++++|.++|+++ . +|..+||++|.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|.
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-~--~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-E--KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-C--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 99999999999999999999999 3 99999999999999999999999999999999999999999999999999987
Q ss_pred ----------------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 310 ----------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 310 ----------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
+|++++++|++.|++++|.+++++|... |+..+|++|+.+|...|+.+.+....+++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~-pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT-PDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8999999999999999999999999765 99999999999999999999999999999
Q ss_pred HHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCCCCCCC
Q 039757 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415 (415)
Q Consensus 368 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 415 (415)
.+..|.+...|..|...|...|+|++|.++.+.|.+.|+++.||||||
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 999999999999999999999999999999999999999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=453.11 Aligned_cols=386 Identities=24% Similarity=0.365 Sum_probs=358.8
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 83 (415)
+...++++|..+.+.| +.||+.+||.+|.+|++.|+++.|.++|++|. . | |..+||++|.+|++.|+
T Consensus 202 ~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~--~---d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 202 DLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMP-------R--R---DCISWNAMISGYFENGE 268 (857)
T ss_pred chhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-------C--C---CcchhHHHHHHHHhCCC
Confidence 4455666666666665 67777788888889999999999999999986 2 5 88999999999999999
Q ss_pred CchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 84 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
+++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+ ||..+||+||.+|++.|++++|.++|++
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999875 8999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhccCCCCcc----------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHH
Q 039757 160 MPCRNVVSWTGILDGYTRMNRSNGAS----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229 (415)
Q Consensus 160 m~~~~~~~~~~li~~~~~~~~~~~a~----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (415)
|..||+.+|+++|.+|++.|++++|. ..||..||+.++.+|++.|+++.+.++++.+.+.|..| +..+|
T Consensus 349 m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-~~~~~ 427 (857)
T PLN03077 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YVVVA 427 (857)
T ss_pred CCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-chHHH
Confidence 99999999999999999999999988 78999999999999999999999999999999999877 99999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
++||++|++.|++++|.++|++|.+ +|..+||.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 9999999999999999999999988 8999999999999999999999999999986 599999999999999999886
Q ss_pred ---------------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 039757 310 ---------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVL 368 (415)
Q Consensus 310 ---------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 368 (415)
.+++|+++|+++|++++|.++|+++ . ||..+|+++|.+|++.|+.++|.++|++|.
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~-~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--E-KDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--C-CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6789999999999999999999998 3 799999999999999999999999999999
Q ss_pred HcccC-CCccHHHHHHHHHhcCchhhHHHHHHHHh-hhccccC
Q 039757 369 EMERG-NGGDYVLMYNILAGVGRYVDAERLRRVMD-ERNALKF 409 (415)
Q Consensus 369 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~ 409 (415)
+.+.. |..+|..++.+|.+.|++++|.++|++|. +.|+.|+
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 88854 88999999999999999999999999998 6788775
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=443.73 Aligned_cols=381 Identities=15% Similarity=0.167 Sum_probs=359.8
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
+++..|.++|++|.+.|.+.|+..+++.++.+|.+.|..++|+.+|+.|. . | |..+|+.++.+|++.|
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~--p---d~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------N--P---TLSTFNMLMSVCASSQ 451 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------C--C---CHHHHHHHHHHHHhCc
Confidence 67889999999999999788999999999999999999999999999986 2 6 9999999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.||.+|++.|++++|.++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984 899999999999999999999999999
Q ss_pred hCC----CCChhHHHHHHHHHHhccCCCCcc------------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 159 EMP----CRNVVSWTGILDGYTRMNRSNGAS------------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 159 ~m~----~~~~~~~~~li~~~~~~~~~~~a~------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
+|. .||..+|+.+|.+|++.|++++|. ..||..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 996 589999999999999999998887 4789999999999999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
| +..+|+.+|.+|++.|++++|.++|++|... .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 612 p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns- 689 (1060)
T PLN03218 612 G-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS- 689 (1060)
T ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-
Confidence 7 9999999999999999999999999999988 58999999999999999999999999999999999999999887
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC-CCcc
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG-NGGD 377 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 377 (415)
||.+|++.|++++|.++|++|... .|+..+|+.||.+|++.|++++|.++|++|.+.+.. +..+
T Consensus 690 -------------LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 690 -------------LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred -------------HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 666699999999999999999754 799999999999999999999999999999988754 8899
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHhhhccccCC
Q 039757 378 YVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 378 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
|..++.+|++.|++++|.+++++|.+.|+.|++
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999998764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=438.00 Aligned_cols=380 Identities=16% Similarity=0.161 Sum_probs=354.1
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
+....|..+|..|.. ||..+|+.+|.+|++.|+++.|.++|+.|. ..|+. | |..+|+.+|.+|++.|
T Consensus 420 g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~---~~Gl~--p---D~~tynsLI~~y~k~G 486 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQ---EAGLK--A---DCKLYTTLISTCAKSG 486 (1060)
T ss_pred CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH---HcCCC--C---CHHHHHHHHHHHHhCc
Confidence 456778888877753 999999999999999999999999999999 99999 9 9999999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.||.+|++.|++++|.++|+
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999964 899999999999999999999999999
Q ss_pred hCC------CCChhHHHHHHHHHHhccCCCCcc----------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 159 EMP------CRNVVSWTGILDGYTRMNRSNGAS----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 159 ~m~------~~~~~~~~~li~~~~~~~~~~~a~----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
+|. .||..+|+++|.+|++.|++++|. ..|+..+|+.++.+|++.|++++|..+|++|.+.|+.
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 995 489999999999999999999888 6889999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
| |..+|+.++.+|++.|++++|.++|++|.+. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 647 P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~- 724 (1060)
T PLN03218 647 P-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA- 724 (1060)
T ss_pred C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-
Confidence 7 9999999999999999999999999999987 58999999999999999999999999999999999999999888
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC-CCcc
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG-NGGD 377 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 377 (415)
||.+|++.|++++|.++|++|... .||..+|+.++.+|++.|++++|.+++++|.+.+.. +..+
T Consensus 725 -------------LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 725 -------------LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred -------------HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 566689999999999999999766 899999999999999999999999999999999876 7788
Q ss_pred HHHHHHHHHh----c-------------------CchhhHHHHHHHHhhhccccCC
Q 039757 378 YVLMYNILAG----V-------------------GRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 378 ~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
|+.++..|.+ + +..++|..+|++|.+.|+.|+.
T Consensus 792 ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 792 CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 9998865432 1 2246799999999999999863
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-53 Score=411.00 Aligned_cols=368 Identities=20% Similarity=0.290 Sum_probs=326.0
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc-CCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCC
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTH-SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF 99 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 99 (415)
..++..+|+.+|..|.+.|++++|+++|+.|. .. ++. | |..+|+.++.+|++.++++.+.+++..|.+.|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~---~~~~~~--~---~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~ 154 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILE---AGCPFT--L---PASTYDALVEACIALKSIRCVKAVYWHVESSGF 154 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHH---hcCCCC--C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 34566799999999999999999999999998 54 456 7 999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC----CCChhHHHHHHHHH
Q 039757 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP----CRNVVSWTGILDGY 175 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~ 175 (415)
.||..+|+.++..|++.|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|. .|+..||+.++.++
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999996 47888999999999
Q ss_pred HhccCCCCcc----------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 176 TRMNRSNGAS----------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 176 ~~~~~~~~a~----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
.+.|..+.+. ..++..+++.++.+|++.|++++|.++|+.|... +..+||+||.+|++.|++++|
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-----TTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-----ChhHHHHHHHHHHhCCCHHHH
Confidence 8888776655 6678888999999999999999999999888643 888899999999999999999
Q ss_pred HHHHHHhhhh--CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc--------------
Q 039757 246 LKLFEDISVE--RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-------------- 309 (415)
Q Consensus 246 ~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------------- 309 (415)
.++|++|... .||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++.+|++.|.
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 9999998776 488889999999999999999999999999999999999999998888888877
Q ss_pred ---chHHHHHHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHc-c-cCCCccHHHHH
Q 039757 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEM-E-RGNGGDYVLMY 382 (415)
Q Consensus 310 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~l~ 382 (415)
+|+.+|.+|++.|+.++|.++|++|... .||..||+.++.+|.+.|++++|.++|+.|.+. + .|+..+|..++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 7888888888888888888888888765 788888888888888888888888888888764 3 34667888888
Q ss_pred HHHHhcCchhhHHHHHHHH
Q 039757 383 NILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m 401 (415)
++|++.|++++|.+++++|
T Consensus 470 ~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC
Confidence 8888888888888888765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-26 Score=229.28 Aligned_cols=387 Identities=13% Similarity=0.029 Sum_probs=263.5
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++...|..++..+.... .+++.+|..+...+...|++++|.+.|+++. ...+. +...+..+...+...|
T Consensus 445 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~---~~~~~------~~~~~~~la~~~~~~g 513 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKAL---SIEPD------FFPAAANLARIDIQEG 513 (899)
T ss_pred CCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH---hhCCC------cHHHHHHHHHHHHHCC
Confidence 56677777777776643 3556678888888888888888888888877 44433 5566777777778888
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...|+++.+ .+...+..++..+.+.|++++|.++++.
T Consensus 514 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888877654 44666777777777778888888877777653 3445666777777777777777777777
Q ss_pred CCC---CChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 160 MPC---RNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 160 m~~---~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
+.+ .+...|..+..++.+.|++++|. .+.+...+..+...+...|++++|...++.+.+. .|.+..
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 670 (899)
T TIGR02917 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTE 670 (899)
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHH
Confidence 652 34566777777777777777766 2334455666667777777777777777777765 455667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
.+..++..+...|++++|.++++.+....| +...+..+...+...|++++|...|+++... .|+..++..+...+..
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHH
Confidence 777777777777777777777777766533 4555666667777777777777777776664 3444555555555555
Q ss_pred CCc--------------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHH
Q 039757 307 GGL--------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTR 365 (415)
Q Consensus 307 ~~~--------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 365 (415)
.|+ .+..+...|...|++++|.+.|+++....| +..++..+...+...|+ .+|+.+++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 554 445566677777777777777777665533 45566666666666666 55666666
Q ss_pred HHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
++.+..|.++..+..++.++...|++++|.++++++.+.+.
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 66666666666666666666666666666666666665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-26 Score=228.81 Aligned_cols=384 Identities=12% Similarity=0.045 Sum_probs=301.6
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++.+.|.+.|....+..+ .+...+..+...+...|++++|.+.|+.+. ...+. +..++..+...+.+.|
T Consensus 479 ~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~~~------~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVL---TIDPK------NLRAILALAGLYLRTG 547 (899)
T ss_pred CCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcC------cHHHHHHHHHHHHHcC
Confidence 566778888887776542 345567778888888888888888888887 55544 6778888888888888
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
++++|..+++.+.+.+ +.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...+.+.|++++|...|++
T Consensus 548 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 548 NEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred CHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888887765 45666777788888888888888888888764 4567888888888888888888888888
Q ss_pred CCC---CChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 160 MPC---RNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 160 m~~---~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
+.+ .+...+..+..++.+.|++++|. .+.+...+..+...+...|+++.|..+++.+.+.. |.+..
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 704 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAAL 704 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChH
Confidence 753 35566778888888888888877 34456677888888888888888888888888773 55777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccC
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 307 (415)
.+..+...+...|++++|.+.|+++....|+..++..++.++...|++++|...++++.+.. ..+...+..+...+...
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 88888888888888888888888888776766777788888888888888888888887752 23445555555555555
Q ss_pred Cc--------------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHH
Q 039757 308 GL--------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 308 ~~--------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
|+ .+..+...+...|+ ++|+..++++....| +..++..+...+...|++++|.+++++
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55 56677888888888 778888887765534 455677788888888888889999988
Q ss_pred HHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+.+.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 863 a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 863 AVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888888888888888888899999888888875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=185.66 Aligned_cols=304 Identities=15% Similarity=0.094 Sum_probs=248.0
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC-Cc------hhhHHHHHH
Q 039757 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RN------LVTWNVMIT 142 (415)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~------~~~~~~li~ 142 (415)
........+...|+++.|...|+++.+.+ +.+..++..+...+.+.|++++|..+++.+.+ ++ ...+..+..
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 33334455678899999999999999875 44667889999999999999999999998875 21 246888999
Q ss_pred HHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
.|.+.|++++|..+|+++.+.+ +.+..++..+...+...|++++|...++.+.+.+..
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG----------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC----------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999997533 335567778888889999999999999999887533
Q ss_pred CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh--hh
Q 039757 223 AFD---IRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR--VT 296 (415)
Q Consensus 223 ~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~ 296 (415)
+.. ...+..+...+.+.|++++|...|+++.+..| +...+..+...+.+.|++++|.++|+++... .|+. .+
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 251 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEV 251 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHH
Confidence 212 23456778889999999999999999987655 4567888999999999999999999999875 3432 22
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 376 (415)
+. .++..|...|++++|.+.++++....|+...+..++..+.+.|++++|..+++++.+..|.+.
T Consensus 252 ~~--------------~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~- 316 (389)
T PRK11788 252 LP--------------KLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR- 316 (389)
T ss_pred HH--------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-
Confidence 23 367779999999999999999877668877778899999999999999999999999876544
Q ss_pred cHHHHHHHHHh---cCchhhHHHHHHHHhhhccccCCCCC
Q 039757 377 DYVLMYNILAG---VGRYVDAERLRRVMDERNALKFPGRS 413 (415)
Q Consensus 377 ~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~ 413 (415)
.+..++..+.. .|+.+++..++++|.++++++.|.+.
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 66666666654 56999999999999999999999853
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=178.60 Aligned_cols=298 Identities=13% Similarity=0.050 Sum_probs=244.8
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc---hhhHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH---VYVNTA 108 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ 108 (415)
...+...|++++|+..|+++. ..++. +..++..+...+...|+++.|..+++.+...+..++ ...+..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEML---KVDPE------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHH---hcCcc------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 445677899999999999999 65544 677899999999999999999999999987543222 256788
Q ss_pred HHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc
Q 039757 109 LVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185 (415)
Q Consensus 109 li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 185 (415)
+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+....
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------- 175 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL----------------- 175 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc-----------------
Confidence 89999999999999999999976 4677899999999999999999999999875331000
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC--hhhHH
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN--LVSWT 263 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 263 (415)
.......+..+...+...|++++|...++++.+. .|.+...+..++..|.+.|++++|.++|+++....|+ ..+++
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP 253 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence 0001123456677788899999999999999986 4657788889999999999999999999999876554 35688
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHH
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVV 343 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (415)
.++.+|...|++++|...++++.+. .|+...+.. ++..+.+.|++++|.++++++....|+..+
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~--------------la~~~~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEE--YPGADLLLA--------------LAQLLEEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHH--------------HHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 9999999999999999999999886 576655433 677799999999999999988777799999
Q ss_pred HHHHHHHHhh---cCChHHHHHHHHHHHHcccC
Q 039757 344 RRILLGACSF---HGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 344 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 373 (415)
+..++..+.. .|+.+++..+++++.+....
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 9988887764 55899999999999987644
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=172.59 Aligned_cols=354 Identities=12% Similarity=0.061 Sum_probs=298.7
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchh
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 104 (415)
..+|+.+...+-..|++++|+.+++.+. +..+. ....|..+..++...|+.+.|.+.|...++. .|+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~ai---el~p~------fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ 184 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAI---ELKPK------FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLY 184 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHH---hcCch------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchh
Confidence 4579999999999999999999999999 66666 8889999999999999999999999998875 46554
Q ss_pred hHHH-HHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHh
Q 039757 105 VNTA-LVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFEEMPCRNV---VSWTGILDGYTR 177 (415)
Q Consensus 105 ~~~~-li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~~~~~ 177 (415)
...+ +-..+-..|++++|...+.+..+ |. ...|+.|.-.+-.+|+...|+..|++..+-|+ ..|-.|.+.|..
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE 264 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence 4333 33445567999999988887665 54 34799999999999999999999999885443 578899999999
Q ss_pred ccCCCCcc--------C-CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039757 178 MNRSNGAS--------T-EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKL 248 (415)
Q Consensus 178 ~~~~~~a~--------~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 248 (415)
.+.+++|. . +.....+..+...|...|..+.|+..|++.++. .|.-+..|+.|..++-..|++.+|++.
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHH
Confidence 99999988 3 344567888888899999999999999999987 687899999999999999999999999
Q ss_pred HHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHH
Q 039757 249 FEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327 (415)
Q Consensus 249 ~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A 327 (415)
|++.....|+ ....+.|...|...|.+++|..+|....+ +.|.-.. ..+.|...|-++|++++|
T Consensus 343 YnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aa-------------a~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 343 YNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAA-------------AHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhh-------------hhhhHHHHHHhcccHHHH
Confidence 9998887554 57899999999999999999999988776 3555433 244577889999999999
Q ss_pred HHHHhcCCCCCcCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 328 EKIALGIPSEITDV-VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 328 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
+..+++...-.|+. ..++.+...|-..|+.+.|++.+.+++..+|.-.+++..|...|-.+|+..+|++-+++......
T Consensus 408 i~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 408 IMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99998887766754 48888999999999999999999999998888888899999999999999999999988776543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-19 Score=173.98 Aligned_cols=318 Identities=11% Similarity=-0.008 Sum_probs=186.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHH
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 107 (415)
.-.++..+.+.|++++|..+++... ...+. +...+..++.+....|+++.|.+.++.+.+.. +.+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l---~~~p~------~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~ 114 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRV---LTAKN------GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVL 114 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHH---HhCCC------chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 4456778888999999999999988 66555 55666677777888999999999999998864 44667788
Q ss_pred HHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHhccCC
Q 039757 108 ALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC--RNV-VSWTGILDGYTRMNRS 181 (415)
Q Consensus 108 ~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~li~~~~~~~~~ 181 (415)
.+...+...|++++|...+++..+ | +...+..+...+...|++++|...++.+.. |+. ..+..+ ..+...|++
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCH
Confidence 888889999999999999998875 4 466788899999999999999999987742 332 222121 224444444
Q ss_pred CCcc--------C--CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHH----HHH
Q 039757 182 NGAS--------T--EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS----ALK 247 (415)
Q Consensus 182 ~~a~--------~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~ 247 (415)
++|. . .++......+..++...|++++|...++.+.+. .|.+...+..+...+...|++++ |..
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 4443 0 111222222334444555555555555555544 23344445555555555555543 455
Q ss_pred HHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHH
Q 039757 248 LFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQ 326 (415)
Q Consensus 248 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~ 326 (415)
.|+++....| +...+..+...+...|++++|...+++.... .|+..... ..+...|.+.|++++
T Consensus 272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~-------------~~La~~l~~~G~~~e 336 (656)
T PRK15174 272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVR-------------AMYARALRQVGQYTA 336 (656)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH-------------HHHHHHHHHCCCHHH
Confidence 5555444433 2334555555555555555555555554442 33322211 114444555555555
Q ss_pred HHHHHhcCCCCCcCHHH-HHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 327 AEKIALGIPSEITDVVV-RRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 327 A~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
|.+.++.+....|+... +..+..++...|+.++|...|+++.+..|.
T Consensus 337 A~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 337 ASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 55555544433333222 222333444555555555555555554444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-19 Score=171.52 Aligned_cols=332 Identities=11% Similarity=-0.008 Sum_probs=261.5
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
.+++..|..++..+.....- +...+..++.+....|+++.|...|+++. ...+. +...+..+...+...
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l---~~~P~------~~~a~~~la~~l~~~ 123 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLL---AVNVC------QPEDVLLVASVLLKS 123 (656)
T ss_pred cCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHH---HhCCC------ChHHHHHHHHHHHHc
Confidence 46778888888888776632 23345555577777999999999999999 66655 778899999999999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
|+++.|...++.+.+.. +.+...+..+...+...|+.++|...++.+.. |+ ...+..+ ..+.+.|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999998864 44677788899999999999999999987753 43 3344333 34788999999999999
Q ss_pred hCCCC----ChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhH----HHHHHhhhhhcCC
Q 039757 159 EMPCR----NVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRN----CQLIHGYGEKRGF 221 (415)
Q Consensus 159 ~m~~~----~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~ 221 (415)
.+.+. +...+..+..++.+.|++++|. .+.+...+..+...+...|++++ |...++...+.
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-- 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-- 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--
Confidence 87643 2334455667888999988887 34456677788889999999986 89999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
.|.+..++..+...+...|++++|...+++.....| +...+..+..++.+.|++++|...|+++... .|+...+..
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~- 356 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR- 356 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH-
Confidence 677899999999999999999999999999988766 4567888899999999999999999999875 566544322
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (415)
.+...+...|+.++|...|++.....|+.. ..++++|...+....+.-...
T Consensus 357 ------------~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 357 ------------YAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred ------------HHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 134558899999999999998877655542 345567777777777655443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-19 Score=168.83 Aligned_cols=241 Identities=13% Similarity=0.006 Sum_probs=192.2
Q ss_pred CCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhccCCCCcc--------CCCc-hHHHHhHHHHHhhcCChhHHHHH
Q 039757 148 GELEYARSLFEEMPCR------NVVSWTGILDGYTRMNRSNGAS--------TEPS-EITILAVLPAIWQNGAVRNCQLI 212 (415)
Q Consensus 148 g~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~--------~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 212 (415)
+++++|.+.|++..+. ....|..+...+...|++++|. ..|+ ...+..+...+...|++++|...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5788888888877632 3345777778888888888887 3343 45777888888999999999999
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 291 (415)
++.+.+. .|.+..++..+...+...|++++|...|++.....| +...+..+...+.+.|++++|+..|++..+. .
T Consensus 388 ~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~ 463 (615)
T TIGR00990 388 FDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--F 463 (615)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 9999887 577899999999999999999999999999988765 5677888899999999999999999998874 4
Q ss_pred CChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH-H-------HHHHHHHHHhhcCChHHHHHH
Q 039757 292 PNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDV-V-------VRRILLGACSFHGNVEMGERV 363 (415)
Q Consensus 292 p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~~~~~~a~~~ 363 (415)
|+.... +..+...+...|++++|++.|+......|+. . .++.....+...|++++|.++
T Consensus 464 P~~~~~-------------~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 464 PEAPDV-------------YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred CCChHH-------------HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 554321 2236677899999999999998766542321 1 112222233446999999999
Q ss_pred HHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+++..+.+|.+...+..++.++.+.|++++|...+++..+..
T Consensus 531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999999988888889999999999999999999999986543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-18 Score=178.37 Aligned_cols=373 Identities=10% Similarity=0.024 Sum_probs=224.3
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHH---------
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS--------- 72 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~--------- 72 (415)
.++.+.|...|+..++..+ .+...+..+...|.+.|++++|+..|++.. ...+. . +....|.
T Consensus 282 ~g~~~~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al---~~~p~--~--~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKAL---ALDPH--S--SNRDKWESLLKVNRYW 352 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCC--c--cchhHHHHHHHhhhHH
Confidence 3567888888988887552 367789999999999999999999999998 44433 1 0212221
Q ss_pred ---HHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHh
Q 039757 73 ---FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVK 146 (415)
Q Consensus 73 ---~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~ 146 (415)
.....+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|++..+ | +...+..+...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 22446778999999999999998875 44667777888999999999999999999875 3 3456666666664
Q ss_pred hCCHHHHHHHHhhCCCCC------------hhHHHHHHHHHHhccCCCCcc--------CCC-chHHHHhHHHHHhhcCC
Q 039757 147 WGELEYARSLFEEMPCRN------------VVSWTGILDGYTRMNRSNGAS--------TEP-SEITILAVLPAIWQNGA 205 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~------------~~~~~~li~~~~~~~~~~~a~--------~~~-~~~~~~~ll~~~~~~~~ 205 (415)
.++.++|..+++.+.... ...+..+...+...|++++|. ..| +...+..+...+.+.|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 457788888887765321 112333445556666666665 222 33445556666667777
Q ss_pred hhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh------------------------------
Q 039757 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE------------------------------ 255 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------------------ 255 (415)
+++|...++.+.+. .|.++..+..+...+...++.++|...++.+...
T Consensus 511 ~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 511 RSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 77777777776654 3445544444444444555555555555443221
Q ss_pred -----------CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCH
Q 039757 256 -----------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRL 324 (415)
Q Consensus 256 -----------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~ 324 (415)
+.+...+..+...+.+.|++++|+..|++..+. .|+... .+..++..|...|+.
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~-------------a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNAD-------------ARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-------------HHHHHHHHHHHCCCH
Confidence 122233344444444555555555555554442 233211 112244455555666
Q ss_pred HHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCC------ccHHHHHHHHHhcCchhhHHHH
Q 039757 325 EQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG------GDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 325 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
++|++.++......| +...+..+..++...|++++|.++++++....+.++ ..+..+...+...|++++|...
T Consensus 654 ~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 654 AAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666655544333 233444455555556666666666666555443322 2333445555566666666666
Q ss_pred HHHHh
Q 039757 398 RRVMD 402 (415)
Q Consensus 398 ~~~m~ 402 (415)
+++..
T Consensus 734 y~~Al 738 (1157)
T PRK11447 734 YKDAM 738 (1157)
T ss_pred HHHHH
Confidence 65554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=159.60 Aligned_cols=361 Identities=11% Similarity=0.001 Sum_probs=296.6
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++.+.|..++..+++... ..+..|-.+..++...|+.+.|.+.|.... +..+. .....+.+...+-..|
T Consensus 130 g~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~al---qlnP~------l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPD------LYCARSDLGNLLKAEG 198 (966)
T ss_pred chHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcc------hhhhhcchhHHHHhhc
Confidence 567778888888877552 456789999999999999999999999998 44332 2223334444555678
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
+..+|...+.+.++.. +-=...|+.|...+...|++-.|++.|++..+ |+ ...|..|...|-..+.+++|...+.+
T Consensus 199 rl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred ccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 9999999999888764 22356788899999999999999999999886 44 34799999999999999999999988
Q ss_pred CC--CC-ChhHHHHHHHHHHhccCCCCcc--------CCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 160 MP--CR-NVVSWTGILDGYTRMNRSNGAS--------TEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 160 m~--~~-~~~~~~~li~~~~~~~~~~~a~--------~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
.. .| ..+.+..+...|...|..+-|. ..| -+..|+.+..++-..|++.+|.+.|.+.+.. .|..+.
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~had 355 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHAD 355 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHH
Confidence 75 33 4566777777788888887776 334 4678999999999999999999999999987 676888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
..+.|...|...|.+++|..+|....+-.|. ...+|.|...|-++|++++|+..|++... ++|+...
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd---------- 423 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD---------- 423 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH----------
Confidence 9999999999999999999999999887565 45699999999999999999999999887 5776543
Q ss_pred CCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 307 GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
.|+.+...|...|+.+.|.+.+.+...-.|. ...++.|...|-..|+..+|+.-++..+...|+.+.+|-.++.++
T Consensus 424 ---a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 424 ---ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred ---HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 3555778899999999999999887766564 458899999999999999999999999999999888888888776
Q ss_pred HhcCchh
Q 039757 386 AGVGRYV 392 (415)
Q Consensus 386 ~~~g~~~ 392 (415)
.--.+|.
T Consensus 501 q~vcdw~ 507 (966)
T KOG4626|consen 501 QIVCDWT 507 (966)
T ss_pred HHHhccc
Confidence 5444433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-18 Score=172.55 Aligned_cols=364 Identities=10% Similarity=0.003 Sum_probs=272.8
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC-chhhHH---
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-HVYVNT--- 107 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~--- 107 (415)
...+...|++++|+..|++.. ...+. +...+..+...+.+.|++++|...|++..+..... ....+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL---~~~P~------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAV---RANPK------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 456778999999999999998 66555 78899999999999999999999999998764221 111121
Q ss_pred ---------HHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC--C-ChhHHHHHH
Q 039757 108 ---------ALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC--R-NVVSWTGIL 172 (415)
Q Consensus 108 ---------~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li 172 (415)
.+...+.+.|++++|+..|++..+ | +...+..+...+...|++++|++.|++..+ | +...+..+.
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 224567789999999999999875 3 566788899999999999999999999874 3 344566666
Q ss_pred HHHHhccCCCCccC-----CC-------------chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH
Q 039757 173 DGYTRMNRSNGAST-----EP-------------SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234 (415)
Q Consensus 173 ~~~~~~~~~~~a~~-----~~-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 234 (415)
..|. .++.++|.. .+ ....+......+...|++++|...+++..+. .|.++.++..+..
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~ 503 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 6664 345555541 00 0122344556678899999999999999987 5778899999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH---------HHHHHHH
Q 039757 235 TYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF---------LSVLNAC 304 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~---------~~ll~~~ 304 (415)
.|.+.|++++|...|+++....| +...+..+...+...++.++|...++.+......++...+ ......+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999987645 5555666666678899999999999886543222222111 1111112
Q ss_pred ccCCc----------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 305 SHGGL----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 305 ~~~~~----------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
...|+ .+..+...+.+.|+.++|+..|+++....| +...+..++..+...|++++|++.++.+
T Consensus 584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 22221 455677788888888888888887776645 5667888888888888999999888888
Q ss_pred HHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 368 LEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 368 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
.+..+.+...+..+..++...|++++|.++++++......
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 8877777777888888888889999999988888776543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-17 Score=160.04 Aligned_cols=379 Identities=10% Similarity=-0.029 Sum_probs=282.8
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
.++...|.+++....... ..+...+..+...+...|++++|..+|++.. ...+. +...+..+...+...
T Consensus 28 ~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al---~~~P~------~~~a~~~la~~l~~~ 96 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKAL---SLEPQ------NDDYQRGLILTLADA 96 (765)
T ss_pred cCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHC
Confidence 367778888888887633 2445568999999999999999999999988 44444 667788888899999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...|..++|++.++
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999998774 44556 88888899999999999999999875 4 45566778888888999999999998
Q ss_pred hCCC-CCh------hHHHHHHHHHHhc-----cCC---CCcc-----------CCCchH-HH----HhHHHHHhhcCChh
Q 039757 159 EMPC-RNV------VSWTGILDGYTRM-----NRS---NGAS-----------TEPSEI-TI----LAVLPAIWQNGAVR 207 (415)
Q Consensus 159 ~m~~-~~~------~~~~~li~~~~~~-----~~~---~~a~-----------~~~~~~-~~----~~ll~~~~~~~~~~ 207 (415)
.... |+. .....++...... +++ ++|. ..|+.. .+ ...+.++...|+.+
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 7765 110 0111122211111 111 1111 112211 11 11134556779999
Q ss_pred HHHHHHhhhhhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-----hhHHHHHHHHHccCchHHHHHH
Q 039757 208 NCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-----VSWTSIISGFAMHGMGKAAVEN 281 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~A~~~ 281 (415)
+|+..|+.+.+.+.. |.+.. ..+...|...|++++|...|+++...+|.. .....+..++...|++++|..+
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999988532 22222 335778999999999999999987764432 3466677788999999999999
Q ss_pred HHHHHhcCC-----------CCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHH
Q 039757 282 FERMQKVGL-----------KPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLG 349 (415)
Q Consensus 282 ~~~m~~~g~-----------~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~ 349 (415)
++++....- .|+...... +..+...+...|++++|++.++++....| +...+..+..
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a-----------~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQG-----------QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999987520 122111110 12256678899999999999999877755 5668889999
Q ss_pred HHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+...|++++|++.++++.+..|.+...+..++..+.+.|++++|..+++++.+...
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999987543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-16 Score=154.28 Aligned_cols=377 Identities=11% Similarity=-0.019 Sum_probs=281.5
Q ss_pred CCchhhHHHHHHhHhhccCCcchH--HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHH
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHT--LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV 79 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 79 (415)
+++...|...+....+.. |+. ..+ .++..+...|+.++|+..+++.. ..... .......+...+.
T Consensus 47 ~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~---~p~n~------~~~~llalA~ly~ 113 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ---SSMNI------SSRGLASAARAYR 113 (822)
T ss_pred CCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc---cCCCC------CHHHHHHHHHHHH
Confidence 467778888888888766 443 233 88888888899999999999886 21111 3333444466888
Q ss_pred hcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHH
Q 039757 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLF 157 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~ 157 (415)
..|++++|.++|+.+.+.. +-+...+..++..+...++.++|++.++.+.+ |+...+..++..+...++..+|++.+
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 8899999999999998875 34566777788889999999999999999886 44444534434443456665688888
Q ss_pred hhCCC--C-ChhHHHHHHHHHHhccCCCCcc-------------------------------------------------
Q 039757 158 EEMPC--R-NVVSWTGILDGYTRMNRSNGAS------------------------------------------------- 185 (415)
Q Consensus 158 ~~m~~--~-~~~~~~~li~~~~~~~~~~~a~------------------------------------------------- 185 (415)
+++.+ | +...+..+..++.+.|-...|.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 88863 3 3344455555555544433333
Q ss_pred ----------CCCch-----HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 186 ----------TEPSE-----ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 186 ----------~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
..|.. ....-.+-++...++..+++..|+.+...+... ...+...+.++|...+++++|..+|+
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 11221 122345566788899999999999999887433 56788899999999999999999999
Q ss_pred HhhhhCC-------ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC-------------ChhhHHHHHHHHccCCcc
Q 039757 251 DISVERK-------NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP-------------NRVTFLSVLNACSHGGLH 310 (415)
Q Consensus 251 ~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-------------~~~~~~~ll~~~~~~~~~ 310 (415)
.+....+ +......|..+|..++++++|..+++++.+. .| +.. |.. .
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~pn~d-~~~----------~ 418 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGLPGKEPNDD-WIE----------G 418 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCCCCCCCCcc-HHH----------H
Confidence 9866421 2333578899999999999999999999873 22 111 111 1
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
+..++..+.-.|++.+|++.++++....| |......+...+...|.+.+|++.++.+....|.+..+....+.++...|
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 33367778899999999999999977756 77789999999999999999999999999998889999999999999999
Q ss_pred chhhHHHHHHHHhhhcc
Q 039757 390 RYVDAERLRRVMDERNA 406 (415)
Q Consensus 390 ~~~~A~~~~~~m~~~~~ 406 (415)
+|.+|..+.+...+...
T Consensus 499 e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 499 EWHQMELLTDDVISRSP 515 (822)
T ss_pred hHHHHHHHHHHHHhhCC
Confidence 99999999977765443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-16 Score=153.79 Aligned_cols=359 Identities=9% Similarity=-0.035 Sum_probs=263.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
++..-...+......|+.++|++++.... ..... +...+..+...+.+.|++++|.++++...+.. +.+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~---~~~~~------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~ 83 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYR---VHMQL------PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQND 83 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 44445677788888999999999999987 42322 55678999999999999999999999998764 4456
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHh
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC--R-NVVSWTGILDGYTR 177 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~ 177 (415)
..+..+..++...|++++|+..+++..+ | +.. +..+..++...|+.++|+..++++.+ | +...+..+...+..
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6777888999999999999999999875 4 455 88899999999999999999999874 3 44556667777777
Q ss_pred ccCCCCcc-------CCCch------HHHHhHHHHH-----hhcCCh---hHHHHHHhhhhhc-CCCCCCHHHHH----H
Q 039757 178 MNRSNGAS-------TEPSE------ITILAVLPAI-----WQNGAV---RNCQLIHGYGEKR-GFNAFDIRVSN----C 231 (415)
Q Consensus 178 ~~~~~~a~-------~~~~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~~~~~----~ 231 (415)
.+..++|. ..|+. ......+... ...+++ +.|...++.+.+. ...|.....+. .
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 77777665 11111 0111122222 122233 6788888888864 22232221111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCC-h-hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh-hHHHHHHHHccCC
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKN-L-VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV-TFLSVLNACSHGG 308 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~ 308 (415)
.+..+...|++++|+..|+++...+++ + ..-..+...|...|++++|+.+|+++.+. .|... .....
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~-------- 312 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEE-------- 312 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHH--------
Confidence 133456779999999999999886432 1 12233577899999999999999998764 33321 00000
Q ss_pred cchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-------------C---HHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 309 LHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-------------D---VVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-------------~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
...|..++.+.|++++|.++++.+....| + ...+..+...+...|+.++|++.++++....|
T Consensus 313 --~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P 390 (765)
T PRK10049 313 --LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP 390 (765)
T ss_pred --HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 11255568899999999999988776533 2 23456677788999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 373 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+...+..++..+...|++++|++.+++.....
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999988765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-15 Score=147.09 Aligned_cols=352 Identities=14% Similarity=-0.030 Sum_probs=254.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhH
Q 039757 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 106 (415)
.+......+.+.|++++|+..|++.+ .. . | +...|..+..++.+.|+++.|++.++..++.. +.+...+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al---~~--~--p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~ 197 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAI---EC--K--P---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKAL 197 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---hc--C--C---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 35566778889999999999999988 33 3 5 66789999999999999999999999998875 3466788
Q ss_pred HHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCC
Q 039757 107 TALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183 (415)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 183 (415)
..+..+|...|++++|+.-|..... .+......++.-+........+...++.-. .+...+..+.. +....+.+.
T Consensus 198 ~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 198 NRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCc
Confidence 8899999999999999987765532 111111222222222112233444443322 22233333322 222211111
Q ss_pred cc--------CCCc-hHHHHhHHHH---HhhcCChhHHHHHHhhhhhcC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 184 AS--------TEPS-EITILAVLPA---IWQNGAVRNCQLIHGYGEKRG-FNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 184 a~--------~~~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
.. ..+. ...+..+... ....+++++|...|+...+.+ ..|.....+..+..++...|++++|...|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11 0111 0111111111 133578999999999999864 245567788999999999999999999999
Q ss_pred HhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH
Q 039757 251 DISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK 329 (415)
Q Consensus 251 ~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (415)
+.....|+ ...|..+...+...|++++|...|++..+. .|+.... |..+...+...|++++|..
T Consensus 356 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~-------------~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDI-------------YYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH-------------HHHHHHHHHHcCCHHHHHH
Confidence 99887664 567889999999999999999999998875 4554321 2236667899999999999
Q ss_pred HHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 330 IALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 330 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.|++.....| +...+..+...+.+.|++++|+..+++..+..|.++..+..++.++...|++++|...+++......
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 9998877755 4567888888999999999999999999999998999999999999999999999999999877543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-15 Score=146.70 Aligned_cols=85 Identities=9% Similarity=-0.061 Sum_probs=59.2
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHc-CCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 153 (415)
.+.|.+.|+++.|++++..+.+.+ +.+......|..+|.. .++ +.+..+++...+.++..+..+...|.+.|+.++|
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHH
Confidence 556666777777777777777665 2334445555566666 355 6666666654445777788888889999999999
Q ss_pred HHHHhhCC
Q 039757 154 RSLFEEMP 161 (415)
Q Consensus 154 ~~~~~~m~ 161 (415)
.++++++.
T Consensus 267 ~~~L~~~~ 274 (987)
T PRK09782 267 QHYLIENK 274 (987)
T ss_pred HHHHHhCc
Confidence 99988876
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-14 Score=134.67 Aligned_cols=354 Identities=12% Similarity=0.002 Sum_probs=271.6
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCC
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 100 (415)
+.|.+...-.....+.-.|+.++|.+++.+.+ ...+. +...|.+|...|-..|+.+++...+-.+.... +
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvI---kqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p 204 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVI---KQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-P 204 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-C
Confidence 44555554444554555699999999999999 77766 88999999999999999999988877665543 4
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCCh-hHHHHHHHHHH
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV-VSWTGILDGYT 176 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~li~~~~ 176 (415)
-|...|..+.+...+.|.++.|.-.|.+..+ ++...+-.-+..|-+.|+...|.+-|.++...++ +.|-
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e------- 277 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE------- 277 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH-------
Confidence 5778999999999999999999999999886 3444555667789999999999999999875332 1111
Q ss_pred hccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-
Q 039757 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE- 255 (415)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 255 (415)
.-......+++.+...++.+.|.+.+......+....+...++.++..|.+...++.|.....++...
T Consensus 278 -----------r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 278 -----------RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred -----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence 11223344556666777778898888888886656667888999999999999999999998887761
Q ss_pred -----------------------CCChhhHH----HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCC
Q 039757 256 -----------------------RKNLVSWT----SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308 (415)
Q Consensus 256 -----------------------~~~~~~~~----~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 308 (415)
-++...|. .++-++...+..+....+...+....+.|+... ..
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~-dL--------- 416 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDV-DL--------- 416 (895)
T ss_pred cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhH-HH---------
Confidence 01112222 233344555555666666666666654443322 11
Q ss_pred cchHHHHHHhHhcCCHHHHHHHHhcCCCCCc--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 309 LHYGCLVDMLGRAGRLEQAEKIALGIPSEIT--DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
|.-+.++|...|++.+|+++|..+....+ +...|-.+.++|...|.++.|.+.+++++...|.+...-..|...+.
T Consensus 417 --~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 417 --YLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQ 494 (895)
T ss_pred --HHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH
Confidence 33478889999999999999999988733 45689999999999999999999999999999999999999999999
Q ss_pred hcCchhhHHHHHHHHhhhccccCCCCCC
Q 039757 387 GVGRYVDAERLRRVMDERNALKFPGRSL 414 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 414 (415)
+.|+.++|.+.++.+...+....++++|
T Consensus 495 ~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 495 QLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999998666666677777
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-13 Score=131.10 Aligned_cols=352 Identities=11% Similarity=-0.000 Sum_probs=247.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
+-...+.|+++.|++.|++.. ...+. +......++..+...|+.++|+.++++.... -+........+..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL---~~~P~------~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ 110 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEES---KAGPL------QSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAAR 110 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHH---hhCcc------chhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence 345567999999999999998 55544 3222228888888999999999999998721 1223333334466
Q ss_pred HHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHh--ccCCCCcc-
Q 039757 112 MYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR--MNRSNGAS- 185 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~--~~~~~~a~- 185 (415)
.+...|++++|+++|+++.+ | ++..+..++..+...++.++|++.++++...++.....+..++.. .++..+|.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHH
Confidence 88889999999999999986 3 456777888999999999999999999986444333234445544 33332344
Q ss_pred -------CCC-chHHHHhHHHHHhhcCChhHHHHHHh-------------------------------------------
Q 039757 186 -------TEP-SEITILAVLPAIWQNGAVRNCQLIHG------------------------------------------- 214 (415)
Q Consensus 186 -------~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~------------------------------------------- 214 (415)
..| +...+..+..++.+.|-...|.++.+
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 334 45555666666666554444443322
Q ss_pred -----hhhhc-CCCCCCHHHH-H---HHHHHHHhcCCHHHHHHHHHHhhhhCC--ChhhHHHHHHHHHccCchHHHHHHH
Q 039757 215 -----YGEKR-GFNAFDIRVS-N---CLIDTYAKCGCIFSALKLFEDISVERK--NLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 215 -----~~~~~-~~~~~~~~~~-~---~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
.+... +..|+....| . -.+-++...|+..++++.|+.+...+. ...+-..+.++|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 22221 1113222222 1 234467778899999999999987632 3456677889999999999999999
Q ss_pred HHHHhcCCC--CChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-------------CH---HHH
Q 039757 283 ERMQKVGLK--PNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-------------DV---VVR 344 (415)
Q Consensus 283 ~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-------------~~---~~~ 344 (415)
+++...... +....... ...|.-+|...+++++|..+++.+....| +. ..+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-----------~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLD-----------ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred HHHhhccccccCCCcchHH-----------HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 998764211 11111110 12366779999999999999998876422 21 234
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..++..+...|+..+|++.++++....|.|......+..++...|+..+|.+.++.....
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 456777889999999999999999999999999999999999999999999999776654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-13 Score=135.59 Aligned_cols=203 Identities=13% Similarity=-0.026 Sum_probs=158.0
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHH
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~ 267 (415)
|+...+..+...+.+.|+.+.|...++...+.. |.....+..+.......|++++|...|++.....|+...|..+..
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~ 617 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARAT 617 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 334445566677788899999999998888763 545555544445555669999999999988887778778888888
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
++.+.|++++|+..|++.... .|+...+.. .+...+...|+.++|+..+++.....| +...+..
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~-------------nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALEL--EPNNSNYQA-------------ALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH-------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 899999999999999988875 677665332 355568888999999999887776645 5567888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
+..++...|++++|+..++++.+..|.+..+.........+..++..|.+-+++....++.
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 8888999999999999999999988888888888888888888888888888776655443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-13 Score=116.51 Aligned_cols=338 Identities=12% Similarity=0.045 Sum_probs=231.0
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC----CCchhhHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP----ERNLVTWNVMIT 142 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~ 142 (415)
+..++.++|.++|+-...+.|.+++++..+...+.+..+||.+|.+-.-.-+ .++..+|. .||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 7789999999999999999999999999887778999999999977544333 45555554 599999999999
Q ss_pred HHHhhCCHHHH----HHHHhhCC----CCChhHHHHHHHHHHhccCCCCcc-------------------CCCchHHHHh
Q 039757 143 GLVKWGELEYA----RSLFEEMP----CRNVVSWTGILDGYTRMNRSNGAS-------------------TEPSEITILA 195 (415)
Q Consensus 143 ~~~~~g~~~~a----~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~-------------------~~~~~~~~~~ 195 (415)
+..+.|+++.| .+++.+|+ +|...+|..+|..+++.++..+.. .+.+...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999988765 45556666 588899999999999888875544 3445667888
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhcC---CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--CCChhhHHHHHH
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKRG---FNAFD---IRVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWTSIIS 267 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~ 267 (415)
.+..|.+..+.+.|.++..-+.... ..+++ ..-|..+....|.....+.-...|+.|... .|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 8999999999999998877665431 11222 334667788888889999999999999877 588888999999
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc-ch----HHHHHHhHhc-CCHHHHH-HHHhcCCCCCcC
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-HY----GCLVDMLGRA-GRLEQAE-KIALGIPSEITD 340 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~----~~li~~~~~~-g~~~~A~-~~~~~~~~~~p~ 340 (415)
+....|.++-.-.++..|+..|..-....-..++.-.++... .. ..+-....++ -++.++. ..-.++....-.
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~ 521 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP 521 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC
Confidence 999999999888888888887744444443333333322221 00 0000000000 0011110 001112222223
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCcc---HHHHHHHHHhcCchhhHHHHHHHHhhhcccc
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGD---YVLMYNILAGVGRYVDAERLRRVMDERNALK 408 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 408 (415)
....+.+.-.+.+.|..++|.+++..+.+.+-. .... ...+++.-.+.+....|..+++-|...+...
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 445555566667888888888888877554422 2222 3355566666777777777777776665543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-13 Score=124.64 Aligned_cols=126 Identities=8% Similarity=0.001 Sum_probs=93.2
Q ss_pred HHHHHHHhhc--CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhh
Q 039757 28 FNTLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105 (415)
Q Consensus 28 ~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 105 (415)
...+..+... .|+++.|.+.+.... ...-. | ...|.....+..+.|+++.+.+.+.++.+. .|+...
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~---~~~~~--p----~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~ 153 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNA---DHAEQ--P----VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQL 153 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH---hcccc--h----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchH
Confidence 3344444333 699999998888765 32212 1 223444455668999999999999999775 455543
Q ss_pred HH--HHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 106 NT--ALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 106 ~~--~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
.. .....+...|+++.|.+.++.+.+ | ++.....+...|.+.|++++|.+++..+.+..
T Consensus 154 ~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 154 PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 32 346788899999999999999876 3 56788899999999999999999999997543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.4e-14 Score=120.00 Aligned_cols=244 Identities=11% Similarity=0.031 Sum_probs=174.6
Q ss_pred HHhhCCHHHHHHHHhhCCCCChhHHHHHH------HHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhH
Q 039757 144 LVKWGELEYARSLFEEMPCRNVVSWTGIL------DGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRN 208 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li------~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~ 208 (415)
+.+.|+++.|+++++-..+.|..+-+... ..+.-..++..|. ...+......-.......|++++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHH
Confidence 46789999999999888766554433222 2221122333332 22333333333344566899999
Q ss_pred HHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
|...|++.+... ..-......+.-.+...|++++|++.|-++..- ..++.....+...|-...++.+|++++-+...
T Consensus 509 a~~~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 509 AAEFYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 999999999872 112223333444678889999999999887664 34666777788888888899999999866554
Q ss_pred cCCCCChhhHHHHHHHHccCCc--------------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHH
Q 039757 288 VGLKPNRVTFLSVLNACSHGGL--------------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRIL 347 (415)
Q Consensus 288 ~g~~p~~~~~~~ll~~~~~~~~--------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 347 (415)
. +..|......+-.-|-+.|+ +...|...|....-+++|+..|++..--.|+..-|..+
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 3 33345555666666667776 34457777888888999999998876667999999988
Q ss_pred HHHHh-hcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCc
Q 039757 348 LGACS-FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390 (415)
Q Consensus 348 ~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (415)
+..|. +.|++.+|.++++...+..|.+......|++.+...|-
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 87765 68999999999999999999999999999998877763
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-12 Score=120.19 Aligned_cols=272 Identities=15% Similarity=0.100 Sum_probs=203.9
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
.|+.+.|..++.++++..+ .+...|-.|...|-..|+.+++...+-.+- ...++ |...|..+.....+.
T Consensus 152 rg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAA---HL~p~------d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAA---HLNPK------DYELWKRLADLSEQL 220 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHH---hcCCC------ChHHHHHHHHHHHhc
Confidence 3678899999999998763 566789999999999999999988776554 44444 778999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCch----h----hHHHHHHHHHhhCCHHHH
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL----V----TWNVMITGLVKWGELEYA 153 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~a 153 (415)
|+++.|.-.|.++++.. +++....---+..|-+.|+...|...|.++.+.++ . .--..++.+...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999876 45655555577888899999999988888765221 1 222345556666666777
Q ss_pred HHHHhhCCC-----CChhHHHHHHHHHHhccCCCCcc-------------------------------------------
Q 039757 154 RSLFEEMPC-----RNVVSWTGILDGYTRMNRSNGAS------------------------------------------- 185 (415)
Q Consensus 154 ~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~------------------------------------------- 185 (415)
.+.++.... -+...++.++..+.+...++.+.
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 777766542 12233444444444333333222
Q ss_pred ------------------------------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHH
Q 039757 186 ------------------------------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235 (415)
Q Consensus 186 ------------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 235 (415)
..-+...|..+..++.+.|++..|..++..+....... +..+|-.+..+
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARC 458 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHH
Confidence 11223457778888999999999999999999885444 67789999999
Q ss_pred HHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 236 YAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
|...|.+++|.+.|+++....| +...--.|...+.+.|+.++|.+++..|.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999988755 45566777788899999999999999864
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-16 Score=134.18 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
++..+..++..+...++++++.++++.+.... .+...|..+...+.+.|+.++|+..+++..+. .|+.....
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~--- 183 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDAR--- 183 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHH---
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH---
Confidence 44555566666777777777777777765432 35556677777777777777777777777764 56533321
Q ss_pred HHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHH
Q 039757 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (415)
..++..+...|+.+++.++++..... ..++..+..+..++...|+.++|+.++++.....|.|+.....
T Consensus 184 ----------~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~ 253 (280)
T PF13429_consen 184 ----------NALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLA 253 (280)
T ss_dssp ----------HHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHH
T ss_pred ----------HHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccc
Confidence 12555567777777766666554433 2355677788888888888999999999888888888888888
Q ss_pred HHHHHHhcCchhhHHHHHHHHh
Q 039757 381 MYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 381 l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
++.++...|+.++|.++.++..
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHT----------------
T ss_pred cccccccccccccccccccccc
Confidence 8888988999998888877654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=131.80 Aligned_cols=266 Identities=15% Similarity=0.102 Sum_probs=111.3
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc-CCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTH-SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 101 (415)
|+...+ .+...+.+.|++++|+++++.... .. ++. +...|..+...+...++++.|.+.++.+.+.+. -
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~--~~~~~~------~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~ 76 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQ--KIAPPD------DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-A 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccc--cccccc------ccccccccccccccccccccccccccccccccc-c
Confidence 443444 557888999999999999966541 22 223 666677777778889999999999999988763 3
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcc
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 179 (415)
+...+..++.. ...+++++|.++++..-+ +++..+..++..+.+.++++++.++++.......
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-------------- 141 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-------------- 141 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------------
T ss_pred ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------
Confidence 56677777777 689999999999887643 5677788899999999999999999998652110
Q ss_pred CCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCC
Q 039757 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKN 258 (415)
Q Consensus 180 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~ 258 (415)
...+...|......+.+.|+.++|...+++..+. .|.+..+.+.++..+...|+.+++.++++..... +.|
T Consensus 142 ------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 142 ------APDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp --------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 2456667788888889999999999999999998 6878999999999999999999999999888777 457
Q ss_pred hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC
Q 039757 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 259 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (415)
...+..+..+|...|++++|+.+|++..+. .|+...+.. .+.+.+...|+.++|.++.++...
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~-------------~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLL-------------AYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHH-------------HHHHHHT-----------------
T ss_pred HHHHHHHHHHhccccccccccccccccccc--ccccccccc-------------cccccccccccccccccccccccc
Confidence 778899999999999999999999998874 565544332 267779999999999998876543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-12 Score=119.30 Aligned_cols=124 Identities=10% Similarity=0.023 Sum_probs=76.0
Q ss_pred HHHHHHHhhc--CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch--
Q 039757 28 FNTLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV-- 103 (415)
Q Consensus 28 ~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-- 103 (415)
+..+.+++.. .|+++.|.+.+.+.. ...+. ....+-....+..+.|+++.|.+.+....+.. |+.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~---~~~~~------~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l 153 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNA---DHAAE------PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNI 153 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHh---hcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCch
Confidence 3444444433 677777777776665 33322 22333444556666777777777777765542 333
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC 162 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (415)
.........+...|+++.|...++.+.+ | +...+..+...+...|++++|.++++.+.+
T Consensus 154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 154 LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2333345666677777777777777664 3 455666777777777777777777777664
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-14 Score=126.14 Aligned_cols=280 Identities=11% Similarity=0.027 Sum_probs=161.2
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCC--CCchhhHHHHHHHHHcCC
Q 039757 40 SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF--QSHVYVNTALVNMYVSLG 117 (415)
Q Consensus 40 ~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g 117 (415)
+.++|+.+|.+.. .+-.. +......+.++|...+++++|+++|+.+.+... --+..+|.+.+..+-+.-
T Consensus 334 ~~~~A~~~~~klp---~h~~n------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 334 NCREALNLFEKLP---SHHYN------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHHHHhhH---HhcCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 4566777777754 33333 445666677777777777777777777765421 125566666665543221
Q ss_pred Chh-HHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhH
Q 039757 118 FLK-DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAV 196 (415)
Q Consensus 118 ~~~-~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~l 196 (415)
.+. .|..+.+.. ...+.+|-++.++|.-+++.+.|++.|++..+-|
T Consensus 405 ~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------------------------------- 451 (638)
T KOG1126|consen 405 ALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------------------------------- 451 (638)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--------------------------------
Confidence 111 122222222 2346677777777777777777777777776543
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHH---HHHHHHHccC
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT---SIISGFAMHG 273 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~li~~~~~~~ 273 (415)
|...++|+.+.+-+.....+|.|...|+.... .|+..|| -+...|.+.+
T Consensus 452 --------------------------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 452 --------------------------PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred --------------------------CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccc
Confidence 33556666666666666666666666666655 3333333 3455566666
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHh
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACS 352 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~ 352 (415)
+++.|+-.|++..+ +.|....... | +...+.+.|+.|+|++++++.... ..|+..--.-+..+.
T Consensus 504 k~e~Ae~~fqkA~~--INP~nsvi~~----~---------~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVE--INPSNSVILC----H---------IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hhhHHHHHHHhhhc--CCccchhHHh----h---------hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 66666666666555 3444333211 1 444466666666666666655443 123333333444555
Q ss_pred hcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 353 FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..+++++|+..++++++..|++...|..++..|.+.|+.+.|+.-|--+.+.
T Consensus 569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 6666666666666666666666666666666666666666666655554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-13 Score=122.36 Aligned_cols=282 Identities=13% Similarity=-0.035 Sum_probs=214.1
Q ss_pred hcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHH--HHHHHHHhhCCHHHHHH
Q 039757 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWN--VMITGLVKWGELEYARS 155 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~a~~ 155 (415)
..|+++.|.+.+....+.+-.| ...+........+.|+++.|...++++.+ |+..... .....+...|++++|..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 3589999998888765543222 22233334555789999999999999876 4443332 33678889999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH------HHH
Q 039757 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI------RVS 229 (415)
Q Consensus 156 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~ 229 (415)
.++++.+.+ +-+......+...+.+.|+++.+..++..+.+.+..++.. .+|
T Consensus 175 ~l~~~~~~~----------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~ 232 (398)
T PRK10747 175 GVDKLLEVA----------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAW 232 (398)
T ss_pred HHHHHHhcC----------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999997543 2345667778888899999999999999999986543221 133
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCC
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGG 308 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 308 (415)
..++.......+.+...++++.+... +.++.....+...+...|+.++|.+++++..+. .|+....
T Consensus 233 ~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~----------- 299 (398)
T PRK10747 233 IGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV----------- 299 (398)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-----------
Confidence 34444445556677788888887655 347788999999999999999999999998874 4444221
Q ss_pred cchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh
Q 039757 309 LHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387 (415)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (415)
++.+....++.+++.+..+...+..|+ ...+..+.+.|.+.+++++|.+.|+.+.+..|. ...+..+..++.+
T Consensus 300 -----~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~ 373 (398)
T PRK10747 300 -----LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDR 373 (398)
T ss_pred -----HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 222344569999999999988887674 557888999999999999999999999998765 4567899999999
Q ss_pred cCchhhHHHHHHHHhh
Q 039757 388 VGRYVDAERLRRVMDE 403 (415)
Q Consensus 388 ~g~~~~A~~~~~~m~~ 403 (415)
.|+.++|.+++++-..
T Consensus 374 ~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 374 LHKPEEAAAMRRDGLM 389 (398)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999987654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-12 Score=121.80 Aligned_cols=390 Identities=11% Similarity=0.058 Sum_probs=236.8
Q ss_pred hHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCch
Q 039757 7 VTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL 86 (415)
Q Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~ 86 (415)
.+.+++...-...+ .|+.+.+.|...|.-.|+++.++.+...+...-..+.. -...|-.+.+++-..|+++.
T Consensus 254 ~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~------~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI------KAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred HHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHhhccHHH
Confidence 34444444443332 56677888888888899999999988888731111111 34567888889999999999
Q ss_pred HHHHHHHHHHcCCCCchh--hHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhC----CHHHHHHHH
Q 039757 87 GTQLHAVISKVGFQSHVY--VNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWG----ELEYARSLF 157 (415)
Q Consensus 87 a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~~~ 157 (415)
|..+|....+.. ++.. .+-.|...|.+.|+++.+...|+.+.+ | +..+...|...|+..+ ..++|..++
T Consensus 326 A~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 326 AFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 999988876653 4443 344567888899999999999988765 4 3556666666666664 456677777
Q ss_pred hhCCCCC---hhHHHHHH------------HHHHhccC-CCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhc--
Q 039757 158 EEMPCRN---VVSWTGIL------------DGYTRMNR-SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR-- 219 (415)
Q Consensus 158 ~~m~~~~---~~~~~~li------------~~~~~~~~-~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 219 (415)
.+..++. ...|-.+. .+|.+..+ +......+.....|.+...+...|+++.|...|......
T Consensus 404 ~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 404 GKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 6665432 22222222 22222111 011113467778888888889999999999988887765
Q ss_pred -CCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-hhHHHHHHHHHccCchHHHHHHHHHHHhc-CCC
Q 039757 220 -GFNA-----FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTSIISGFAMHGMGKAAVENFERMQKV-GLK 291 (415)
Q Consensus 220 -~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~ 291 (415)
...+ .+..+--.+..++-..++.+.|.+.|..+....|+- ..|-.++......+...+|...+++.... .-.
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 1111 122344457777778888999999999888876653 34555543344456677777777776442 233
Q ss_pred CChhhH------------------HHHHHHHccCCcchHH--HHHHhH------------hcCCHHHHHHHHhcCCCCCc
Q 039757 292 PNRVTF------------------LSVLNACSHGGLHYGC--LVDMLG------------RAGRLEQAEKIALGIPSEIT 339 (415)
Q Consensus 292 p~~~~~------------------~~ll~~~~~~~~~~~~--li~~~~------------~~g~~~~A~~~~~~~~~~~p 339 (415)
|+..++ ...+.......++|.. |...|. ..+..++|+++|..+....|
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 444333 3233322222223322 122111 12344566666665554422
Q ss_pred -CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 340 -DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 340 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
|...-+-+.-.++..|+++.|..+|.++.+.......+|..++.+|..+|+|..|+++|+...+.-.
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555666666666676666666666665666666666666666666666666666555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-12 Score=105.74 Aligned_cols=292 Identities=11% Similarity=0.052 Sum_probs=207.3
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC-c--hhhHHHHHHHHH
Q 039757 38 ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-H--VYVNTALVNMYV 114 (415)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~ 114 (415)
+.+.++|.++|-+|. +...+ +..+-.+|.+.|.+.|..+.|+.+.+.+.++.--+ + ....-.|..-|.
T Consensus 48 s~Q~dKAvdlF~e~l---~~d~~------t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 48 SNQPDKAVDLFLEML---QEDPE------TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred hcCcchHHHHHHHHH---hcCch------hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 677899999999998 55444 66677888899999999999999999987642111 1 223345667788
Q ss_pred cCCChhHHHHHhcccCC-C--chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchH
Q 039757 115 SLGFLKDSSKLFDELPE-R--NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191 (415)
Q Consensus 115 ~~g~~~~a~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 191 (415)
..|-+|.|+.+|..+.+ + -......|+..|-...+|++|+++-+++.+.+..+|+.-|. .
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA-----------------q 181 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA-----------------Q 181 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH-----------------H
Confidence 99999999999999886 3 24567789999999999999999988887655544444332 2
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh--hhHHHHHHHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL--VSWTSIISGF 269 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~ 269 (415)
.|-.+...+....+++.|...+++..+. .|.....--.+.+.+...|+++.|.+.++.+.++.|+. .+...|..+|
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 2344556666778888999999988887 45566666677888999999999999999998876654 4578888999
Q ss_pred HccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHH
Q 039757 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349 (415)
Q Consensus 270 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 349 (415)
...|+.++....+.++.+....++... . +.+.-....-.+.|...+.+-..+.|+...+..||.
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~g~~~~l--~--------------l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~ 323 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNTGADAEL--M--------------LADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMD 323 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccCCccHHH--H--------------HHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 999999999999999887633333322 1 111122233345555554443334499998888888
Q ss_pred HHhhc---CChHHHHHHHHHHHHcccC
Q 039757 350 ACSFH---GNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 350 ~~~~~---~~~~~a~~~~~~~~~~~~~ 373 (415)
..... |...+.+..++.|......
T Consensus 324 ~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred hhhccccccchhhhHHHHHHHHHHHHh
Confidence 75532 3345555666666554433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-12 Score=102.96 Aligned_cols=305 Identities=14% Similarity=0.093 Sum_probs=229.6
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC-Cchh------hHHHHHH
Q 039757 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLV------TWNVMIT 142 (415)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~li~ 142 (415)
.|..=++.+ -..++++|.++|-+|.+.. +.+..+.-+|-+.|-+.|..|.|+.+-+.+.+ ||.. ....|..
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 444444433 3467899999999998754 44566777888999999999999999999875 5432 3456777
Q ss_pred HHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 143 GLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
-|..+|-+|.|+.+|..+.+.+ ..-+.....++..|-...++++|..+-.++.+.+..
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~----------------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG----------------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch----------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 7899999999999999987533 234556778888999999999999999999988766
Q ss_pred CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 223 AFDI---RVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 223 ~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
+... ..|.-|...+....+.+.|..++.+..+..|+ +..--.+.+.+...|++++|.+.++...+.+ .....
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn----~~yl~ 249 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN----PEYLS 249 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC----hHHHH
Confidence 5443 34666677777788999999999999887554 4445556678999999999999999998863 33333
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccH
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 378 (415)
.++.. |..+|.+.|+.++....+.++.+..+....-..+...-....-.+.|..++.+-+...| +...+
T Consensus 250 evl~~----------L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf 318 (389)
T COG2956 250 EVLEM----------LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGF 318 (389)
T ss_pred HHHHH----------HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHH
Confidence 33333 77779999999999999988877756666655666555555566777777776666554 45566
Q ss_pred HHHHHHHH---hcCchhhHHHHHHHHhhhccccCCCCC
Q 039757 379 VLMYNILA---GVGRYVDAERLRRVMDERNALKFPGRS 413 (415)
Q Consensus 379 ~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~ 413 (415)
..++..-. ..|+..+...+++.|....++..|.|.
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 66776653 356788999999999999988887763
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-11 Score=105.59 Aligned_cols=344 Identities=17% Similarity=0.151 Sum_probs=226.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh--cCCCch-HHHHHHHHHHcCCCCchhh
Q 039757 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT--LSYPNL-GTQLHAVISKVGFQSHVYV 105 (415)
Q Consensus 29 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~--~~~~~~-a~~~~~~~~~~g~~~~~~~ 105 (415)
|.|+. ....|.+..+.-+++.|. +.|+. . +...-..|++..+- ..++-- -++.|-.|.+.| ..+..+
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~---~e~~~--v---S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~s 189 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMR---SENVD--V---SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSS 189 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHH---hcCCC--C---CHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccc
Confidence 34433 445777888888888887 66665 4 55555555443322 222222 234444555444 233333
Q ss_pred HHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhccC-
Q 039757 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC----RNVVSWTGILDGYTRMNR- 180 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~- 180 (415)
| +.|++.+ -+|+.. -....+|.+||.++|+--..+.|.+++++... -+..++|.+|.+-.-...
T Consensus 190 W--------K~G~vAd--L~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K 258 (625)
T KOG4422|consen 190 W--------KSGAVAD--LLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGK 258 (625)
T ss_pred c--------ccccHHH--HHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccH
Confidence 3 3444443 334433 34567899999999999999999999988763 456777877765332211
Q ss_pred -CC-Cc---cCCCchHHHHhHHHHHhhcCChhHH----HHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHH
Q 039757 181 -SN-GA---STEPSEITILAVLPAIWQNGAVRNC----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS-ALKLFE 250 (415)
Q Consensus 181 -~~-~a---~~~~~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 250 (415)
.- +. ...||..|+|.++.+.++.|+++.+ .+++.+|.+.|+.| ...+|..+|..+++.++..+ |..++.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-sLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-SLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHHhcccCCchhhhHHHHH
Confidence 10 00 1789999999999999999977664 57888999999888 88999999998888887644 555666
Q ss_pred Hhhhh------C---C-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcC----CCCChhhHHHHHHHHccCCcchHHHHH
Q 039757 251 DISVE------R---K-NLVSWTSIISGFAMHGMGKAAVENFERMQKVG----LKPNRVTFLSVLNACSHGGLHYGCLVD 316 (415)
Q Consensus 251 ~~~~~------~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~~li~ 316 (415)
++... + | |...|..-+..|....+.+-|.++-.-+.... +.|+ ..-+. -|..+..
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~-~~~~f----------Yyr~~~~ 406 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD-QHRNF----------YYRKFFD 406 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH-HHHHH----------HHHHHHH
Confidence 65544 1 2 34456777788888888888888776665321 2233 21111 1445777
Q ss_pred HhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc-------------------cC--
Q 039757 317 MLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEME-------------------RG-- 373 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~-- 373 (415)
..|+....+.-...|+.|..+ .|+..+...++++....+.++-.-++|..++.-| +.
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~ 486 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPL 486 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCC
Confidence 788888888888888888877 7788888888887777777766666665555433 00
Q ss_pred ----------------------------------CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 374 ----------------------------------NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 374 ----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
++...+..+..+.|.|+.++|.+++.-+.+.+
T Consensus 487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 11245566677889999999999999886544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.7e-13 Score=118.48 Aligned_cols=280 Identities=11% Similarity=0.009 Sum_probs=218.2
Q ss_pred hhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCc
Q 039757 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 85 (415)
..|...|..+.... .-+.-....+.++|...+++++|.++|+.+.+.....+. +.++|.+++-.+-+.
T Consensus 336 ~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~------~meiyST~LWHLq~~---- 403 (638)
T KOG1126|consen 336 REALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK------GMEIYSTTLWHLQDE---- 403 (638)
T ss_pred HHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------chhHHHHHHHHHHhh----
Confidence 35566666643322 223346677889999999999999999999954333444 888999888654322
Q ss_pred hHHHHH-HHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCC---chhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 86 LGTQLH-AVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER---NLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 86 ~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
-++.++ +.+.+.. +-.+.+|.++..+|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+...
T Consensus 404 v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 404 VALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 233333 3333333 557889999999999999999999999999863 45688999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCC
Q 039757 162 CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC 241 (415)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 241 (415)
..|+..|++ |..+.-.|.+.++++.|+-.|+.+.+- .|.+..+...+...+.+.|+
T Consensus 483 ~~~~rhYnA----------------------wYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 483 GVDPRHYNA----------------------WYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred cCCchhhHH----------------------HHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhh
Confidence 877666654 556667788899999999999999887 67788888889999999999
Q ss_pred HHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh
Q 039757 242 IFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR 320 (415)
Q Consensus 242 ~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~ 320 (415)
.++|+++|+++.... .|+..-...+..+...+++++|+..++++++ +.|+..+... .+...|.+
T Consensus 539 ~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~-------------llgki~k~ 603 (638)
T KOG1126|consen 539 KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFA-------------LLGKIYKR 603 (638)
T ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHH-------------HHHHHHHH
Confidence 999999999988764 4666666777888889999999999999998 4788776443 36667888
Q ss_pred cCCHHHHHHHHhcCCCC
Q 039757 321 AGRLEQAEKIALGIPSE 337 (415)
Q Consensus 321 ~g~~~~A~~~~~~~~~~ 337 (415)
.|+.+.|+.-|.-+...
T Consensus 604 ~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 604 LGNTDLALLHFSWALDL 620 (638)
T ss_pred HccchHHHHhhHHHhcC
Confidence 89888888877655544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-11 Score=104.63 Aligned_cols=377 Identities=10% Similarity=0.020 Sum_probs=199.1
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
+.+...|+.+|...+... ..+...|-..+..=.+++.+..|..++++.. ..-+. -...|---+..=-..
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAv---t~lPR------VdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAV---TILPR------VDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHH---Hhcch------HHHHHHHHHHHHHHh
Confidence 456677888888877655 4777788888888888888888888888887 33222 222343444444456
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC--CCchhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP--ERNLVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
|++..|.++|+.-.+. .|+...|++.|+.=.+...++.|..+++... .|++.+|--....=-+.|....|.++|+.
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 8888888888887664 6888888888888888888888888888754 58888887777777778888887777776
Q ss_pred CCC--CChhHHHHHHHHHH----hccCCCCcc--------CCCc---hHHHHhHHHHHhhcCChhHHHHH--------Hh
Q 039757 160 MPC--RNVVSWTGILDGYT----RMNRSNGAS--------TEPS---EITILAVLPAIWQNGAVRNCQLI--------HG 214 (415)
Q Consensus 160 m~~--~~~~~~~~li~~~~----~~~~~~~a~--------~~~~---~~~~~~ll~~~~~~~~~~~a~~~--------~~ 214 (415)
..+ .|-..-..+..++. ++..++.|. ..|. ...|......--+-|+....+.+ |+
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 642 11111111111111 122222222 1111 12222333222333333333222 23
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh---hhHHHHHHH--------HHccCchHHHHHHHH
Q 039757 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL---VSWTSIISG--------FAMHGMGKAAVENFE 283 (415)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~li~~--------~~~~~~~~~A~~~~~ 283 (415)
..++. .|.|-.+|--.++.-...|+.+...++|++....-|.. ..|...|.. =....+.+.+.++|+
T Consensus 313 ~~v~~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSK--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHh--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333 34455555555555555566666666666655542211 112111111 122445555555555
Q ss_pred HHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHH
Q 039757 284 RMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERV 363 (415)
Q Consensus 284 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 363 (415)
...+. +.-...||..+--. ......++.++..|.+++.......|...+|...|..-.+.++++.+..+
T Consensus 391 ~~l~l-IPHkkFtFaKiWlm----------yA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLM----------YAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHhh-cCcccchHHHHHHH----------HHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 55552 22333444332111 12222334444444444444433334444444444444444444444444
Q ss_pred HHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
+++.++-+|.+..+|...+..-...|+.+.|..+|+-..+.
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 44444444444444444444444444444444444444433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-12 Score=118.17 Aligned_cols=393 Identities=11% Similarity=-0.004 Sum_probs=232.0
Q ss_pred CCchhhHHHHHHhHhhccCCcch-HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHH-TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
.+|-+.++.+..+.+..--..+- ..+|--+.++|-..|++++|...|.... ..... - ....+.-|.+.+.+
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~---k~~~d--~---~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL---KADND--N---FVLPLVGLGQMYIK 354 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---ccCCC--C---ccccccchhHHHHH
Confidence 34555566666666554422221 1246677888888899999988888777 33333 1 13455667788888
Q ss_pred cCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCC----ChhHHHHHhcccCCC---chhhHHHHHHHHHhhCCHHHH
Q 039757 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG----FLKDSSKLFDELPER---NLVTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 81 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a 153 (415)
.|+.+.+...|+...+.. +-+..+.-.|...|...+ ..+.|..++....++ |...|-.+...+....-+ .+
T Consensus 355 ~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~s 432 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-AS 432 (1018)
T ss_pred hchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HH
Confidence 888888888888887763 445566666666666654 456666666665542 455565555555433222 22
Q ss_pred HHHHhhC--------CCCChhHHHHHHHHHHhccCCCCcc-------------CCCch------HHHHhHHHHHhhcCCh
Q 039757 154 RSLFEEM--------PCRNVVSWTGILDGYTRMNRSNGAS-------------TEPSE------ITILAVLPAIWQNGAV 206 (415)
Q Consensus 154 ~~~~~~m--------~~~~~~~~~~li~~~~~~~~~~~a~-------------~~~~~------~~~~~ll~~~~~~~~~ 206 (415)
+.+|... ....++.-|.+.......|.+++|. ..++. .+--.+.......++.
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 3333322 1344455666666666666666555 11222 1233444455566677
Q ss_pred hHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHH
Q 039757 207 RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERM 285 (415)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 285 (415)
+.|...|..+.+. .|.-...|--++.+....+...+|...++..... ..++..+..+...+....++..|.+-|...
T Consensus 513 ~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 513 EVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 7777777777765 3433333433332223334555666666555443 123333333444444444444444433333
Q ss_pred HhcC-CCCChhhHHHHHHHH----ccCCc----------------------------chHHHHHHhHhcCCHHHHHHHHh
Q 039757 286 QKVG-LKPNRVTFLSVLNAC----SHGGL----------------------------HYGCLVDMLGRAGRLEQAEKIAL 332 (415)
Q Consensus 286 ~~~g-~~p~~~~~~~ll~~~----~~~~~----------------------------~~~~li~~~~~~g~~~~A~~~~~ 332 (415)
.+.- ..+|..+...|=.-| .+... .-+.+.-.++..|++.+|..+|.
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFs 670 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFS 670 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHH
Confidence 2210 011211111111100 00000 12335566888999999999999
Q ss_pred cCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 333 GIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 333 ~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+.+. .-...+|-.+..+|...|++..|+++|+...+...+ ++.....|++++.+.|++.+|.+.+.......+
T Consensus 671 qVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 671 QVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 88776 225568889999999999999999999999887765 677888999999999999999999877665443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=7e-12 Score=114.63 Aligned_cols=284 Identities=12% Similarity=-0.024 Sum_probs=203.2
Q ss_pred HhcCCCchHHHHHHHHHHcCCCCchh-hHHHHHHHHHcCCChhHHHHHhcccCC--Cch--hhHHHHHHHHHhhCCHHHH
Q 039757 79 VTLSYPNLGTQLHAVISKVGFQSHVY-VNTALVNMYVSLGFLKDSSKLFDELPE--RNL--VTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~a 153 (415)
...|+++.|.+.+....+.. |+.. .+-....+..+.|+.+.|.+.+++..+ |+. ...-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 46789999999998887654 4433 334455778889999999999998754 443 3444458888899999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHH-HH
Q 039757 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN-CL 232 (415)
Q Consensus 154 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l 232 (415)
...++.+.+.. +-+......+...+...|+++.+...+..+.+.+..+ ...+. .-
T Consensus 173 l~~l~~l~~~~----------------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~--~~~~~~l~ 228 (409)
T TIGR00540 173 RHGVDKLLEMA----------------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD--DEEFADLE 228 (409)
T ss_pred HHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC--HHHHHHHH
Confidence 99999997533 2245667788888999999999999999999986433 32221 11
Q ss_pred HH---HHHhcCCHHHHHHHHHHhhhh-----CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH-HHHHH
Q 039757 233 ID---TYAKCGCIFSALKLFEDISVE-----RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL-SVLNA 303 (415)
Q Consensus 233 i~---~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~ 303 (415)
.. .....+..+++.+.+..+... +.+...+..+...+...|+.++|.+++++..+. .||..... .++..
T Consensus 229 ~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~ 306 (409)
T TIGR00540 229 QKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLP 306 (409)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHH
Confidence 11 112223333233344443333 237788999999999999999999999999886 45554311 01111
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH---HHHHHHHHHHhhcCChHHHHHHHHH--HHHcccCCCccH
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDV---VVRRILLGACSFHGNVEMGERVTRK--VLEMERGNGGDY 378 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~ 378 (415)
......++.+.+.+.++...+..|+. ....++...+.+.|++++|.+.|+. ..+..| +...+
T Consensus 307 ------------~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~ 373 (409)
T TIGR00540 307 ------------IPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDL 373 (409)
T ss_pred ------------hhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHH
Confidence 11334577888888888777665643 5667889999999999999999995 555554 44557
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 379 VLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 379 ~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
..++..+.+.|+.++|.+++++...
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7999999999999999999987543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-12 Score=117.26 Aligned_cols=238 Identities=11% Similarity=0.020 Sum_probs=164.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHh
Q 039757 47 LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 126 (415)
Q Consensus 47 ~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 126 (415)
++-.+. ..|+. | +..||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e---~~gi~--P---nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--- 79 (1088)
T KOG4318|consen 12 FLALHE---ISGIL--P---NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--- 79 (1088)
T ss_pred HHHHHH---HhcCC--C---chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---
Confidence 455566 88999 9 9999999999999999999999 9999988888888999999999999999988876
Q ss_pred cccCCCchhhHHHHHHHHHhhCCHHH---HHHHHhhCCC-------------------------CChhHHHHHHHHHHhc
Q 039757 127 DELPERNLVTWNVMITGLVKWGELEY---ARSLFEEMPC-------------------------RNVVSWTGILDGYTRM 178 (415)
Q Consensus 127 ~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~-------------------------~~~~~~~~li~~~~~~ 178 (415)
+|...+|.+|..+|...||+.. +.+.++.+.. ||..+ .+.-....
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~e 152 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLE 152 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHH
Confidence 7888999999999999999654 3332222210 11110 00000111
Q ss_pred cCCCCcc----CCCchHHHH---hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 179 NRSNGAS----TEPSEITIL---AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 179 ~~~~~a~----~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
|-++.+. ..|....++ .+++-+.. +....+++....... ...+++.+|.+++++-...|+.+.|..++.+
T Consensus 153 glwaqllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl-~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSL-VEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHh-hcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 1111000 011111110 01222211 122223333222222 1234999999999999999999999999999
Q ss_pred hhhhC--CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 252 ISVER--KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 252 ~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
|.+.+ .+..-|-.|+-+ .++...++.+++-|...|+.|+..|+...+..|..+|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99985 345555566655 88889999999999999999999999998888877544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-11 Score=104.76 Aligned_cols=344 Identities=13% Similarity=0.002 Sum_probs=222.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC-chhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc-hhh
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD-SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-VYV 105 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~ 105 (415)
+-....-|.++|.+++|++.+.+.+ ... | + +.-|.....+|...|+++.+.+--...++. .|+ +..
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI---~l~----p---~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KA 185 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAI---ELC----P---DEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKA 185 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHH---hcC----C---CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHH
Confidence 4445567788999999999999998 333 4 5 778899999999999999988887777665 343 445
Q ss_pred HHHHHHHHHcCCChhHHHH------HhcccCC-------------------------------CchhhHHHHHHHHHhh-
Q 039757 106 NTALVNMYVSLGFLKDSSK------LFDELPE-------------------------------RNLVTWNVMITGLVKW- 147 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~------~~~~~~~-------------------------------~~~~~~~~li~~~~~~- 147 (415)
+..-..++-..|++++|+. +++.... |+.....+....+...
T Consensus 186 l~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 186 LLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred HHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 5556666777777766652 1111110 2222222222222210
Q ss_pred -------C-----CHHHHHHHHhhCCC--------------------C-----Chh------HHHHHHHHHHhccCCCCc
Q 039757 148 -------G-----ELEYARSLFEEMPC--------------------R-----NVV------SWTGILDGYTRMNRSNGA 184 (415)
Q Consensus 148 -------g-----~~~~a~~~~~~m~~--------------------~-----~~~------~~~~li~~~~~~~~~~~a 184 (415)
+ ...++.+.+..-.. + |.. +.......+.-.|+...+
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 0 11222222221110 0 000 000011112223443333
Q ss_pred c--------CCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 185 S--------TEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 185 ~--------~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
. ..| +...|--+...|....+.++....|....+. .|.++.+|..-..++.-.+++++|..=|++....
T Consensus 346 ~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3 111 1222555666677788888888888888776 5667778877777777788888888888888776
Q ss_pred CC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc
Q 039757 256 RK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG 333 (415)
Q Consensus 256 ~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (415)
.| ++..|-.+..+.-+.+++++++..|++.+++ -|+ ...|+ -....+...++++.|.+.|+.
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~--------------~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYN--------------LFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHH--------------HHHHHHhhHHhHHHHHHHHHH
Confidence 54 4566777777777778888888888887765 343 33333 366678999999999999987
Q ss_pred CCCCCcC---------HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 334 IPSEITD---------VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 334 ~~~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
.....|+ +.+...++..-.+ +++..|..+++++.+.+|....+|..|...-.+.|+.++|+++|++-.
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6655333 2222233332223 899999999999999999999999999999999999999999998754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-10 Score=101.41 Aligned_cols=357 Identities=12% Similarity=0.014 Sum_probs=249.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhh
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 105 (415)
.+|+.-...|.+.+.++-|..+|.... +--+. +...|......--..|..+....+|+++...- +-....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~al---qvfp~------k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~l 586 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHAL---QVFPC------KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEIL 586 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHH---hhccc------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhH
Confidence 356666667777777777777777766 22222 55666666666666667777777777776653 334444
Q ss_pred HHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhccC
Q 039757 106 NTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~ 180 (415)
|......+-..|++..|..++...-+ .+...|-+-++.-.....+++|..+|.+.. .++...|..-++..--.+.
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 55555666667777777777766654 245567777777777777788877777765 3444455444444444444
Q ss_pred CCCcc--------CCCch-HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 181 SNGAS--------TEPSE-ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 181 ~~~a~--------~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
.++|. ..|+- ..|..+.+.+.+.++.+.|...|..-.+. .|..+..|-.|.+.-.+.|.+-+|..+|++
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 44444 33333 34556666777888888888888887776 677888888888888888888999999988
Q ss_pred hhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH
Q 039757 252 ISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 252 ~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (415)
..-..| +...|-..|+.=.+.|+.+.|..++.+..+. -|+.-. .|..-|.+..+.++--.+.+.
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~-------------LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGL-------------LWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccch-------------hHHHHHHhccCcccchHHHHH
Confidence 776644 6778888899889999999998888777664 233322 233355556666666666666
Q ss_pred HhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCC
Q 039757 331 ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 331 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
++.... |+...-.+...+....++++|.+.|.+....++.+..+|..+...+.+.|.-++-.+++......... -
T Consensus 810 Lkkce~---dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~--h 884 (913)
T KOG0495|consen 810 LKKCEH---DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT--H 884 (913)
T ss_pred HHhccC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--C
Confidence 666554 55566677777888889999999999999999999999999999999999999999999887765433 3
Q ss_pred CCCC
Q 039757 411 GRSL 414 (415)
Q Consensus 411 ~~~~ 414 (415)
|..|
T Consensus 885 G~~W 888 (913)
T KOG0495|consen 885 GELW 888 (913)
T ss_pred CcHH
Confidence 5444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.6e-11 Score=100.01 Aligned_cols=126 Identities=10% Similarity=0.082 Sum_probs=98.5
Q ss_pred HHHHHhhc--CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHH
Q 039757 30 TLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107 (415)
Q Consensus 30 ~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 107 (415)
.+..++.+ .|++.+|+++..+-. .++.. ....|..-..+.-..|+.+.+..++.++.+..-.++....-
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rna---e~~e~------p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~l 157 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNA---EHGEQ------PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVEL 157 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhh---hcCcc------hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHH
Confidence 34444444 689999999988876 67766 35567777778888899999999999887764356666777
Q ss_pred HHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 108 ALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 108 ~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
+........|+++.|..-.+++.+ .++........+|.+.|++.+...++..+.+..
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 777888889999888887777654 567788889999999999999999999887644
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-11 Score=102.64 Aligned_cols=201 Identities=13% Similarity=0.019 Sum_probs=166.9
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
....+..+...+...|++++|...+++..+. .|.+...+..+...+...|++++|.+.+++.....| +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3456777888899999999999999999887 466788999999999999999999999999887744 5667888899
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
.+...|++++|...+++.......|..... +..+...+...|++++|.+.+++.....| +...+..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARS-------------LENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 999999999999999999875322222111 22256678999999999999988776644 4567888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
+...+...|++++|...+++..+..+.++..+..++..+...|+.++|..+.+.+...
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999986667778888899999999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-11 Score=105.97 Aligned_cols=348 Identities=12% Similarity=0.044 Sum_probs=226.4
Q ss_pred CcchHHHHHHHH--HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcC
Q 039757 21 LLHHTLLFNTLL--HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG 98 (415)
Q Consensus 21 ~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 98 (415)
..-+...|-..+ ..+-+.|....|+..|.... ..-+. .=..|..|...+ .+ .+....... |
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v---~~~P~------~W~AWleL~~li---t~----~e~~~~l~~-~ 220 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVV---NRYPW------FWSAWLELSELI---TD----IEILSILVV-G 220 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHH---hcCCc------chHHHHHHHHhh---ch----HHHHHHHHh-c
Confidence 333334444444 45566788899999888877 22111 222333333222 11 222222222 2
Q ss_pred CCCchhhHH--HHHHHHHcCCChhHHHHHhcccCC---Cch-hhHHHHHHHHHhhCCHHHHHHHHhhCCCC------Chh
Q 039757 99 FQSHVYVNT--ALVNMYVSLGFLKDSSKLFDELPE---RNL-VTWNVMITGLVKWGELEYARSLFEEMPCR------NVV 166 (415)
Q Consensus 99 ~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~ 166 (415)
.+.|..... .+..++-...+.+++..-.+.... |+. ..-+....+.-...|+++|+.+|+++.+. |..
T Consensus 221 l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmd 300 (559)
T KOG1155|consen 221 LPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMD 300 (559)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHH
Confidence 222221111 133455555566666665555543 222 12222333344566777777777777643 445
Q ss_pred HHHHHHHHHHhccCCC-Ccc-----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC
Q 039757 167 SWTGILDGYTRMNRSN-GAS-----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240 (415)
Q Consensus 167 ~~~~li~~~~~~~~~~-~a~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 240 (415)
+|+.++-.-....+.. -|. .+....|...+.+-|+-.++.++|...|+..++. .|.....|+.+.+-|....
T Consensus 301 lySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmK 378 (559)
T KOG1155|consen 301 LYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMK 378 (559)
T ss_pred HHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhc
Confidence 5655543321100000 000 3455567777778888899999999999999998 5778899999999999999
Q ss_pred CHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhH
Q 039757 241 CIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLG 319 (415)
Q Consensus 241 ~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~ 319 (415)
+...|.+-++...+-. .|-..|-.|.++|.-.+.+.-|+-.|++... ++|+..-... +|...|.
T Consensus 379 Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~-------------aLG~CY~ 443 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWV-------------ALGECYE 443 (559)
T ss_pred ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHH-------------HHHHHHH
Confidence 9999999999988874 4888999999999999999999999999887 4777665433 3666699
Q ss_pred hcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc-----cC--CCccHHHHHHHHHhcCch
Q 039757 320 RAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEME-----RG--NGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~--~~~~~~~l~~~~~~~g~~ 391 (415)
+.++.++|++.|.+...- ..+...+..|...|.+.++.++|...+.+-++.. .. ...+...|..-+.+.+++
T Consensus 444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF 523 (559)
T ss_pred HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence 999999999999887665 2344688999999999999999999999887733 11 223344567777788888
Q ss_pred hhHHHHHHHHh
Q 039757 392 VDAERLRRVMD 402 (415)
Q Consensus 392 ~~A~~~~~~m~ 402 (415)
++|..+.....
T Consensus 524 ~~As~Ya~~~~ 534 (559)
T KOG1155|consen 524 DEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHh
Confidence 88776554443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-09 Score=99.13 Aligned_cols=346 Identities=11% Similarity=0.009 Sum_probs=238.7
Q ss_pred HhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHH----HHcCCCCchhhHHHH
Q 039757 34 FYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVI----SKVGFQSHVYVNTAL 109 (415)
Q Consensus 34 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l 109 (415)
+|++..-++.|..++++.. +.-+. +...|.+....=-..|+.+...+++.+. ...|+..+..-|..=
T Consensus 415 AlarLetYenAkkvLNkaR---e~ipt------d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAR---EIIPT------DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HHHHHHHHHHHHHHHHHHH---hhCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 3444445555555555554 22222 5555555555555555555555555443 234555555555555
Q ss_pred HHHHHcCCChhHHHHHhcccCC------CchhhHHHHHHHHHhhCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhccC
Q 039757 110 VNMYVSLGFLKDSSKLFDELPE------RNLVTWNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~ 180 (415)
...|-+.|..-.+..+...... .-..||+.-...|.+.+.++-|..+|....+ .+...|......--..|.
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc
Confidence 5555555555555555544432 1234666666667777777777777766653 122333333222222222
Q ss_pred CCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 181 SNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 181 ~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
.+.-. .+-.+.-+..........|++..|..++....+. .|.+..+|-+-+.....+..++.|..+|.+
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 22111 3334444555556667789999999999999887 466888999999999999999999999999
Q ss_pred hhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 252 ISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 252 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
.....|+...|..-+..-...++.++|.+++++..+. -|+-.-+.. .+...+.+.++++.|...|
T Consensus 644 ar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~l-------------mlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 644 ARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWL-------------MLGQIEEQMENIEMAREAY 708 (913)
T ss_pred HhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHH-------------HHhHHHHHHHHHHHHHHHH
Confidence 9888888888888888888889999999999988774 566555433 3566688999999999998
Q ss_pred hcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 332 LGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 332 ~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
..-...-|+ +..|-.|...-.+.|++-.|..++++..-.+|.+...|...+++-.+.|+.+.|..++.+..+.-
T Consensus 709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777666564 45788888877888999999999999999999999999999999999999999998887766543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-10 Score=99.63 Aligned_cols=218 Identities=11% Similarity=0.045 Sum_probs=151.2
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCCC---chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcc
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPER---NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 179 (415)
+.|+..+.+-|+-.++.++|...|++..+- ....|+.|.+-|....+...|++-++...+-
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---------------- 393 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---------------- 393 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc----------------
Confidence 344555555555555666666666655542 2335555666666666666666666555443
Q ss_pred CCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CC
Q 039757 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KN 258 (415)
Q Consensus 180 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~ 258 (415)
.+.|-..|-.+.++|.-.+...-|.-.|++..+. .|.|...|.+|.++|.+.++.++|++.|......+ .+
T Consensus 394 ------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 394 ------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred ------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 3557778999999999999999999999999987 78899999999999999999999999999988762 34
Q ss_pred hhhHHHHHHHHHccCchHHHHHHHHHHHhc----CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcC
Q 039757 259 LVSWTSIISGFAMHGMGKAAVENFERMQKV----GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 259 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (415)
...+..|...|-+.++.++|.+.|.+-.+. |..-+......+. |...+.+.+++++|.......
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f------------LA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF------------LAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH------------HHHHHHhhcchHHHHHHHHHH
Confidence 578999999999999999999888876552 3333322222211 555677888888875543222
Q ss_pred CCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 335 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
.. -....++|..+++++.....
T Consensus 534 ~~----------------~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 534 LK----------------GETECEEAKALLREIRKIQA 555 (559)
T ss_pred hc----------------CCchHHHHHHHHHHHHHhcC
Confidence 21 13345677777777665443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-13 Score=82.02 Aligned_cols=50 Identities=28% Similarity=0.565 Sum_probs=47.2
Q ss_pred CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 257 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999998888753
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-09 Score=92.31 Aligned_cols=370 Identities=8% Similarity=-0.014 Sum_probs=273.5
Q ss_pred CchhhHHHHHHhHhhccCCcchHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTL-LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
...+.|+.+|+.-+..- |-+. .|-..+..=-..|++..|.++|++-. ..+ | +...|++.|..=.+-
T Consensus 121 k~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~gaRqiferW~-----~w~--P---~eqaW~sfI~fElRy 187 (677)
T KOG1915|consen 121 KQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAGARQIFERWM-----EWE--P---DEQAWLSFIKFELRY 187 (677)
T ss_pred hhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHHHHHHHHHHH-----cCC--C---cHHHHHHHHHHHHHh
Confidence 35678888888877643 4443 46666666677899999999998866 234 6 999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC------CchhhHHHHHHHHHhhCCHHHHHH
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE------RNLVTWNVMITGLVKWGELEYARS 155 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~ 155 (415)
+.++.|..+++..+-. .|++.+|--....=.+.|+...|..+|+...+ .+...+.+....=.++..++.|.-
T Consensus 188 keieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~ 265 (677)
T KOG1915|consen 188 KEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARF 265 (677)
T ss_pred hHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 58999998888888899999999999988765 233455555555566777888888
Q ss_pred HHhhCCC--C---ChhHHHHHHHHHHhccCCCCcc-----------------CCCchHHHHhHHHHHhhcCChhHHHHHH
Q 039757 156 LFEEMPC--R---NVVSWTGILDGYTRMNRSNGAS-----------------TEPSEITILAVLPAIWQNGAVRNCQLIH 213 (415)
Q Consensus 156 ~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~-----------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 213 (415)
+|+-... | ....|......--+-|+..... .+.|-.++-..+......|+.+...++|
T Consensus 266 iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~y 345 (677)
T KOG1915|consen 266 IYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETY 345 (677)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHH
Confidence 7765542 1 1233444443333444433332 5666778888888888899999999999
Q ss_pred hhhhhcCCCCCCH--HHHHHH----HH----HHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHH----HccCchHHH
Q 039757 214 GYGEKRGFNAFDI--RVSNCL----ID----TYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGF----AMHGMGKAA 278 (415)
Q Consensus 214 ~~~~~~~~~~~~~--~~~~~l----i~----~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~----~~~~~~~~A 278 (415)
+..... .||-. ..|.-. |+ .-....+.+.+.++|+...+.-| ...||..+--.| .++.+...|
T Consensus 346 ErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 346 ERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 999988 34321 111111 22 12345789999999998887633 455655544444 467899999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCCh
Q 039757 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNV 357 (415)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 357 (415)
.+++...+ |.-|...+|.. .|..-.+.+++|.+..+++...+-.| +..+|.-....-...|+.
T Consensus 424 RkiLG~AI--G~cPK~KlFk~--------------YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 424 RKILGNAI--GKCPKDKLFKG--------------YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT 487 (677)
T ss_pred HHHHHHHh--ccCCchhHHHH--------------HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH
Confidence 99998765 45788888776 56667888999999999998887756 667898888888889999
Q ss_pred HHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 358 EMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 358 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.|..+|+.+++.... +.-.|-..|+--...|.++.|..+++++.+..
T Consensus 488 dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 488 DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9999999999887654 33456677777788999999999999988754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-10 Score=110.03 Aligned_cols=247 Identities=12% Similarity=0.045 Sum_probs=169.0
Q ss_pred ChhHHHHHhcccCC--Cc-hhhHHHHHHHHH---------hhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc
Q 039757 118 FLKDSSKLFDELPE--RN-LVTWNVMITGLV---------KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS 185 (415)
Q Consensus 118 ~~~~a~~~~~~~~~--~~-~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 185 (415)
++++|...|++..+ |+ ...|..+..++. ..+++++|...+++..+.+
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--------------------- 334 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--------------------- 334 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC---------------------
Confidence 35677777777665 32 334555544443 2244678888887776533
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-hhHHH
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTS 264 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 264 (415)
+-+...+..+...+...|++++|...+++..+. .|.+...+..+..++...|++++|...+++.....|+. ..+..
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 234556666777778889999999999999987 57788888889999999999999999999998876653 33444
Q ss_pred HHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHH-H
Q 039757 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV-V 343 (415)
Q Consensus 265 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~ 343 (415)
++..+...|++++|...++++.... .|+....... +...|...|+.++|...++++....|+.. .
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~-------------la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~ 477 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSM-------------QVMFLSLKGKHELARKLTKEISTQEITGLIA 477 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHH-------------HHHHHHhCCCHHHHHHHHHHhhhccchhHHH
Confidence 4555667889999999999887642 3444432222 44557889999999999988776655443 4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+.+...|+..| +.|...++.+.+..-.....+..+...|.-.|+-+.+..+ +++.+.+
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 455555667776 4778877777665543222223355566667777777766 7777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-10 Score=97.58 Aligned_cols=196 Identities=15% Similarity=-0.019 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHH
Q 039757 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLV 145 (415)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 145 (415)
..+..+...+...|+++.|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+ .+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 344455555555555555555555554432 22344444455555555555555555554442 23334555555555
Q ss_pred hhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC
Q 039757 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225 (415)
Q Consensus 146 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (415)
..|++++|.+.|++...... .......+..+...+...|+++.|...+....+. .|.+
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 168 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPL--------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQR 168 (234)
T ss_pred HcccHHHHHHHHHHHHhccc--------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCC
Confidence 66666666666655542110 0112223344455556666666666666666655 3445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
...+..+...+...|++++|...+++..... .+...+..+...+...|+.++|..+.+.+..
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6677778888888888888888888776653 3455666777777788888888888777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=100.43 Aligned_cols=228 Identities=14% Similarity=0.059 Sum_probs=188.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhh
Q 039757 138 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217 (415)
Q Consensus 138 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (415)
+.|.++|.+.|.+.+|.+.|+.-.+ ..|-..||..+-..|.+...++.|..++.+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~-----------------------q~~~~dTfllLskvY~ridQP~~AL~~~~~gl 283 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT-----------------------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGL 283 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh-----------------------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhh
Confidence 5677777888888888877776553 45667788888889999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
+. .|.+.....-+.+.+...++.++|.++|+.+.+..| ++.....+...|.-.++++-|+..|+++.+.|+......
T Consensus 284 d~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf 361 (478)
T KOG1129|consen 284 DS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF 361 (478)
T ss_pred hc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence 87 676777777888999999999999999999988744 677777788889999999999999999999998755544
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--CcC--HHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--ITD--VVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
.|+ ...+.-.+++|-++.-|++.... .|+ ...|-.+.......||+..|.+.|+..+..++
T Consensus 362 ~Ni---------------gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 362 CNI---------------GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred hhH---------------HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 443 33355577888888888766554 343 45788888888899999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 373 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+..+++.|...-.+.|+.++|..++....+..
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999998877654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-09 Score=92.00 Aligned_cols=277 Identities=10% Similarity=0.005 Sum_probs=213.8
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
+||.+.|+++...-.+.+. -.+..|-.-.++--..||.+.+-..+.+.- +...+ + +...+.+..+.....
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaa---e~~~~--~---~l~v~ltrarlll~~ 166 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAA---ELAGD--D---TLAVELTRARLLLNR 166 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHh---ccCCC--c---hHHHHHHHHHHHHhC
Confidence 5778888888777655551 223346666677788999999999999987 44223 3 667778888889999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCC-----------chhhHHHHHHHHHhhCCH
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER-----------NLVTWNVMITGLVKWGEL 150 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~ 150 (415)
|+.+.|..-.+.+.+.+ +-..........+|.+.|++.....++..+.+. -..+|+.++.-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999998876 446777888889999999999999999998751 234788888877777777
Q ss_pred HHHHHHHhhCC---CCChhHHHHHHHHHHhccCCCCcc--------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhc
Q 039757 151 EYARSLFEEMP---CRNVVSWTGILDGYTRMNRSNGAS--------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR 219 (415)
Q Consensus 151 ~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 219 (415)
+.-...++... +.++..-.+++.-+.+.|+.++|. ...|+. -..+-.+.+.++.+.-.+..++..+.
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 77667777776 345666677777778888887776 222332 22333456677777777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC
Q 039757 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293 (415)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 293 (415)
.|.++..+.+|...|.+.+.|.+|.+.|+...+.+|+..+|+.+.++|.+.|+.++|.++.++....-..|+
T Consensus 324 --h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 324 --HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred --CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 455788999999999999999999999999888889999999999999999999999999998765444444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-10 Score=108.70 Aligned_cols=244 Identities=11% Similarity=0.005 Sum_probs=156.2
Q ss_pred CchhhHHHHHHhHhhccCCcch-HHHHHHHHHHhh---------cCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHH
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHH-TLLFNTLLHFYS---------LADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYS 72 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 72 (415)
.+...|..+|...++.. |+ ...|..+...|. ..+++++|...+++.. ...+. +..++.
T Consensus 275 ~~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al---~ldP~------~~~a~~ 342 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT---ELDHN------NPQALG 342 (553)
T ss_pred HHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH---hcCCC------CHHHHH
Confidence 34556777777776654 33 334544444332 2345788888888888 66555 777788
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cch-hhHHHHHHHHHhhCC
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNL-VTWNVMITGLVKWGE 149 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~ 149 (415)
.+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++..+ |+. ..+..++..+...|+
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~ 421 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG 421 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence 88788888888888888888888765 34566677777888888888888888888765 432 233344445666788
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHH
Q 039757 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228 (415)
Q Consensus 150 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (415)
+++|...+++....+ .| +...+..+..++...|+.++|...+..+... .|.+...
T Consensus 422 ~eeA~~~~~~~l~~~----------------------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~ 477 (553)
T PRK12370 422 IDDAIRLGDELRSQH----------------------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIA 477 (553)
T ss_pred HHHHHHHHHHHHHhc----------------------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHH
Confidence 888888887764311 11 2233455556667788888888888776655 4445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhh---CCChhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 229 SNCLIDTYAKCGCIFSALKLFEDISVE---RKNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
.+.+...|+..| ++|...++.+.+. .+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 666666677766 4677766666554 1222222 33445556666666555 777664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-10 Score=95.98 Aligned_cols=277 Identities=12% Similarity=0.077 Sum_probs=193.7
Q ss_pred HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh-cCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT-LSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 33 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
..|.++|+++.|+++++-+. ...-. .. +...-|.-+--+.+ .+++..|.++-+..+... .-+......--.
T Consensus 427 ~~~lk~~d~~~aieilkv~~---~kdnk--~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn 498 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFE---KKDNK--TA--SAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGN 498 (840)
T ss_pred HHHHhccCHHHHHHHHHHHH---hccch--hh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCc
Confidence 35778899999999888877 33222 10 11111221222222 236667777766654432 122222222222
Q ss_pred HHHcCCChhHHHHHhcccCCCchhhHHHH---HHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC
Q 039757 112 MYVSLGFLKDSSKLFDELPERNLVTWNVM---ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~ 188 (415)
.-...|++++|...+++....|...-.+| .-.+-+.|++++|++.|-++..- ...
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i----------------------l~n 556 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI----------------------LLN 556 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH----------------------HHh
Confidence 33356889999999988887665433333 33466788999999888776310 122
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~ 267 (415)
+...+..+...|....+...|.+++.+.... .|.|+.+.+.|...|-+.|+-..|.+.+-+--.- +-+..+..-|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 4455566667777788888888888777665 7889999999999999999999998876543333 457788888888
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
.|....-+++|+..|++.-- ++|+..-|..++..| +.+.|++.+|.++++.+..+.| +......
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc-------------~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASC-------------FRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHH-------------HHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 89999999999999998765 689999999988887 7899999999999999988755 7778888
Q ss_pred HHHHHhhcCC
Q 039757 347 LLGACSFHGN 356 (415)
Q Consensus 347 l~~~~~~~~~ 356 (415)
|++.+...|-
T Consensus 700 lvri~~dlgl 709 (840)
T KOG2003|consen 700 LVRIAGDLGL 709 (840)
T ss_pred HHHHhccccc
Confidence 8888776653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-10 Score=103.79 Aligned_cols=198 Identities=14% Similarity=0.051 Sum_probs=141.1
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhc-----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------CCChh-
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKR-----G-FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--------RKNLV- 260 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~- 260 (415)
+...|...+++++|..+|+.+... | ..|.-..+++.|..+|.+.|++++|...+++..+- .|.+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 334445555555555555555431 1 12324566777888899999999998888876554 12332
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhc---CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKV---GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
.++.++..+...+++++|..++++..+. -..++...... +++.|...|...|++++|.++++++...
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~----------~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK----------IYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH----------HHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3777888899999999999999876542 12333322222 4677999999999999999999877544
Q ss_pred --------Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc----cC---CCccHHHHHHHHHhcCchhhHHHHHHHH
Q 039757 338 --------IT-DVVVRRILLGACSFHGNVEMGERVTRKVLEME----RG---NGGDYVLMYNILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 338 --------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m 401 (415)
.+ ....++.|...|.+.+++++|.++|.+..... +. ...+|..|+.+|.+.|++++|.++.+..
T Consensus 397 ~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 397 LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 12 23467788889999999999999998876543 33 2357889999999999999999999887
Q ss_pred hh
Q 039757 402 DE 403 (415)
Q Consensus 402 ~~ 403 (415)
..
T Consensus 477 ~~ 478 (508)
T KOG1840|consen 477 LN 478 (508)
T ss_pred HH
Confidence 74
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.4e-12 Score=77.49 Aligned_cols=50 Identities=28% Similarity=0.456 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
||+.+||++|++|++.|++++|+++|++|. ..|+. | |..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~---~~g~~--P---~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK---KRGIK--P---DSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH---HcCCC--C---CHHHHHHHHHHHcC
Confidence 899999999999999999999999999999 99999 9 99999999999875
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-08 Score=93.55 Aligned_cols=250 Identities=10% Similarity=0.022 Sum_probs=173.6
Q ss_pred HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039757 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112 (415)
Q Consensus 33 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 112 (415)
..+...|++++|++.++.-. ..-+. ...........+.+.|+.++|..++..+++.+ +.+..-|..+..+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~---~~I~D------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNE---KQILD------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhh---hhCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 45678899999999998865 33333 45566777889999999999999999999986 3455555656666
Q ss_pred HHcC-----CChhHHHHHhcccCC--C-------------chhhHHHHHHHHHhhCCHHHHHHHHhhCCC----C-ChhH
Q 039757 113 YVSL-----GFLKDSSKLFDELPE--R-------------NLVTWNVMITGLVKWGELEYARSLFEEMPC----R-NVVS 167 (415)
Q Consensus 113 ~~~~-----g~~~~a~~~~~~~~~--~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~~ 167 (415)
..-. .+.+....+++++.+ | +...|...+..|.+.+--..+-.+|..++. + -..+
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 5322 246777788887753 1 122344555555444322223333333331 1 1223
Q ss_pred HHHHHHHHHhccCCCCc--------cCCCchH--HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHH
Q 039757 168 WTGILDGYTRMNRSNGA--------STEPSEI--TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYA 237 (415)
Q Consensus 168 ~~~li~~~~~~~~~~~a--------~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 237 (415)
...++..|......... ...|... ++.-+...+...|++++|..+++..+.. .|..+..|..-.+.+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 44455555443222211 1344443 4466677888999999999999999998 6877999999999999
Q ss_pred hcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 238 KCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 238 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
+.|++++|.+.++...... .|...=+..+..+.++|+.++|.+++......+..|-.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 9999999999999998864 35566677788899999999999999999887654433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.5e-10 Score=96.64 Aligned_cols=317 Identities=13% Similarity=0.007 Sum_probs=193.0
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc-hhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHh
Q 039757 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-VYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVK 146 (415)
Q Consensus 71 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~ 146 (415)
+.....-|.+.|.+++|+++|.+.++. .|| +..|.....+|...|+++++.+.--...+ |+ ...+.--..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 445566688899999999999999886 466 77888899999999999999887776665 43 3467777778888
Q ss_pred hCCHHHHHHHH------hhCCC---------------------------CChhHHHHHHHHHHhccC-------------
Q 039757 147 WGELEYARSLF------EEMPC---------------------------RNVVSWTGILDGYTRMNR------------- 180 (415)
Q Consensus 147 ~g~~~~a~~~~------~~m~~---------------------------~~~~~~~~li~~~~~~~~------------- 180 (415)
.|++++|+.=+ +.... +.+..-.+.|..|...=.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 88888765422 21110 000111112222221100
Q ss_pred CCCcc------------------------------CCC-----ch----HHHHhHHHH--HhhcCChhHHHHHHhhhhhc
Q 039757 181 SNGAS------------------------------TEP-----SE----ITILAVLPA--IWQNGAVRNCQLIHGYGEKR 219 (415)
Q Consensus 181 ~~~a~------------------------------~~~-----~~----~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~ 219 (415)
.+.+. ..+ |. .....++.+ +.-.|+.-.+..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 00000 000 00 011111111 12346666666677776666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
.|.+...|--+..+|....+.++.+..|++.....| |+.+|-.-.+.+.-.+++++|..-|++.+.. .|+... .
T Consensus 356 --~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~-~ 430 (606)
T KOG0547|consen 356 --DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAY-A 430 (606)
T ss_pred --CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhH-H
Confidence 333444455566667777777777777777766643 5666777777777777777777777777663 444322 1
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC----
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERG---- 373 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 373 (415)
|-.+.-+..+.+++++++..|++.+.+.|+ +..|+.....+...+++++|.+.++..++..+.
T Consensus 431 ------------~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 431 ------------YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 112333356667788888888877777564 457777777788888888888888888877766
Q ss_pred --CCccHHHHHHHHH-hcCchhhHHHHHHHHhhhcc
Q 039757 374 --NGGDYVLMYNILA-GVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 374 --~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~ 406 (415)
++.++..-..+.. =.++++.|.+++++..+.+.
T Consensus 499 ~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP 534 (606)
T ss_pred cccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc
Confidence 4433332222221 23777777777777665543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.8e-08 Score=86.74 Aligned_cols=387 Identities=14% Similarity=0.086 Sum_probs=217.8
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++....+..|+.-.+.-++.-....|...+......|-++.++.++++..+ - ++..-+.-+..++..+
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~---------~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---V---------APEAREEYIEYLAKSD 183 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---c---------CHHHHHHHHHHHHhcc
Confidence 344445555555554444555556677777777777777788888887772 2 3344566677777888
Q ss_pred CCchHHHHHHHHHHc------CCCCchhhHHHHHHHHHcCCC---hhHHHHHhcccCC--Cch--hhHHHHHHHHHhhCC
Q 039757 83 YPNLGTQLHAVISKV------GFQSHVYVNTALVNMYVSLGF---LKDSSKLFDELPE--RNL--VTWNVMITGLVKWGE 149 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~g~ 149 (415)
++++|.+.+...+.. .-+.+...|.-+-+..++.-+ --....+++.+.. +|. ..|+.|..-|++.|+
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 888887777776432 113445556655555554432 2334556666654 343 478999999999999
Q ss_pred HHHHHHHHhhCCC--CChhHHHHHHHHHHh---------cc-CCCCccCCCch-------HHHHhHHH------------
Q 039757 150 LEYARSLFEEMPC--RNVVSWTGILDGYTR---------MN-RSNGASTEPSE-------ITILAVLP------------ 198 (415)
Q Consensus 150 ~~~a~~~~~~m~~--~~~~~~~~li~~~~~---------~~-~~~~a~~~~~~-------~~~~~ll~------------ 198 (415)
+++|.++|++... -++..++.+.++|.+ .+ ..++....-+. ..+..++.
T Consensus 264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 9999999988653 234445555555543 11 00011100000 01111111
Q ss_pred ------------HHhhcCChhHHHHHHhhhhhcCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CCh-
Q 039757 199 ------------AIWQNGAVRNCQLIHGYGEKRGFNAF-----DIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNL- 259 (415)
Q Consensus 199 ------------~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~- 259 (415)
.-...|+..+....|.++++.- .|. -...|..+.+.|-..|+++.|..+|++....+ +.+
T Consensus 344 Qn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred cCCccHHHHHhhhhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 0122345556666666666541 111 34556677777777777777777777776642 111
Q ss_pred ---hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC-----------------hhhHHHHH---HHHccCCc---chHH
Q 039757 260 ---VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN-----------------RVTFLSVL---NACSHGGL---HYGC 313 (415)
Q Consensus 260 ---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----------------~~~~~~ll---~~~~~~~~---~~~~ 313 (415)
.+|-.-...=.++.+++.|+.++++....--.|. ...|..++ .+|+-... .|..
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2344444444455666777776666543211110 01111111 12111000 1221
Q ss_pred --------------HHHHhHhcCCHHHHHHHHhcCCCC--CcCHH-HHHHHHHHHhh---cCChHHHHHHHHHHHHcccC
Q 039757 314 --------------LVDMLGRAGRLEQAEKIALGIPSE--ITDVV-VRRILLGACSF---HGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 314 --------------li~~~~~~g~~~~A~~~~~~~~~~--~p~~~-~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 373 (415)
....+....-++++.+++++-... .|++. .|+..+.-+.+ ....+.|..+|++.++.-||
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 222344556688899999887776 45544 77776665543 34689999999999996665
Q ss_pred -CCc-cHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 374 -NGG-DYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 374 -~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
... .|......=.+.|....|+.++++..
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333 33344444456788888999988854
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-09 Score=99.14 Aligned_cols=240 Identities=18% Similarity=0.107 Sum_probs=158.8
Q ss_pred hhHHHHHHHHHhcCCCchHHHHHHHHHHc-----CC-CCchhh-HHHHHHHHHcCCChhHHHHHhcccCC----------
Q 039757 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKV-----GF-QSHVYV-NTALVNMYVSLGFLKDSSKLFDELPE---------- 131 (415)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~---------- 131 (415)
.++..|...|...|+++.|..++....+. |. .|...+ .+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555888889999999999998887664 21 233333 23355667777777777777766642
Q ss_pred C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHH
Q 039757 132 R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQ 210 (415)
Q Consensus 132 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~ 210 (415)
| -..+++.|...|.+.|++++|...+++..+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~------------------------------------------------ 311 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE------------------------------------------------ 311 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH------------------------------------------------
Confidence 1 123566666677777777777766665531
Q ss_pred HHHhhhhhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CCC----hhhHHHHHHHHHccCchHHHHH
Q 039757 211 LIHGYGEKRGFNAFD-IRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKN----LVSWTSIISGFAMHGMGKAAVE 280 (415)
Q Consensus 211 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~~~li~~~~~~~~~~~A~~ 280 (415)
+++. ..|..++. ...++.++..++..+++++|..++....+. +++ ..+++.|...|...|++++|..
T Consensus 312 -I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 312 -IYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred -HHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 1111 01111112 334556667788888888888888776554 222 2468999999999999999999
Q ss_pred HHHHHHhcC---CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-------CcCHH-HHHHHHH
Q 039757 281 NFERMQKVG---LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-------ITDVV-VRRILLG 349 (415)
Q Consensus 281 ~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~p~~~-~~~~l~~ 349 (415)
++++..+.- ..-...-++. .++.+...|.+.++.++|.++|.+...- .|+.. +|..|..
T Consensus 389 ~~k~ai~~~~~~~~~~~~~~~~----------~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~ 458 (508)
T KOG1840|consen 389 LYKKAIQILRELLGKKDYGVGK----------PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAA 458 (508)
T ss_pred HHHHHHHHHHhcccCcChhhhH----------HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 999876541 1111111122 2444778889999999888888654322 55544 8999999
Q ss_pred HHhhcCChHHHHHHHHHHHH
Q 039757 350 ACSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~ 369 (415)
.|...|++++|.++.+.+..
T Consensus 459 ~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 459 LYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHcccHHHHHHHHHHHHH
Confidence 99999999999999998874
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-08 Score=90.29 Aligned_cols=365 Identities=9% Similarity=0.022 Sum_probs=241.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHH
Q 039757 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109 (415)
Q Consensus 30 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 109 (415)
...-.+...|+.++|....+.-. +..+. +.+.|..+.-.+...+++++|.+.|..+...+ +-|...+.-+
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~gl---r~d~~------S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDl 115 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGL---RNDLK------SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDL 115 (700)
T ss_pred hccchhhcccchHHHHHHHHHHh---ccCcc------cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 33334555788888988888887 66666 77888888888888889999999999988876 4566677666
Q ss_pred HHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC-----CChhHHHHHH------HHH
Q 039757 110 VNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC-----RNVVSWTGIL------DGY 175 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li------~~~ 175 (415)
.-.-++.|+++.....-..+.+ | ....|..+..++.-.|+...|..++++..+ ++...+.-.. ...
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 6666677888777776666654 3 455788888888899999999999887762 4444443322 234
Q ss_pred HhccCCCCcc--------CCCchHHHH-hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039757 176 TRMNRSNGAS--------TEPSEITIL-AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSAL 246 (415)
Q Consensus 176 ~~~~~~~~a~--------~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (415)
.+.|..++|. ...|...+. .-...+.+.+++++|..++..+... .|.+...|..+..++.+-.+.-++.
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~l 273 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEAL 273 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHH
Confidence 4556656665 122222222 2333457788999999999998888 5645555555666665333333333
Q ss_pred -HHHHHhhhhCCChhhHHHHHHHHHc-cCchHHHHHHHHHHHhcCCCCChhhHHHHHHH-------------HccC----
Q 039757 247 -KLFEDISVERKNLVSWTSIISGFAM-HGMGKAAVENFERMQKVGLKPNRVTFLSVLNA-------------CSHG---- 307 (415)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-------------~~~~---- 307 (415)
.+|....+..|....-..+--.... ..-.+....++..+.+.|+.+-...+.++..- +.+.
T Consensus 274 k~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 274 KALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT 353 (700)
T ss_pred HHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccc
Confidence 6666665552221111111111111 12233344555556666554433333322211 1110
Q ss_pred Cc-----------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHH-HHHHHHHHHhhcCChHHHHHHHHHHHH
Q 039757 308 GL-----------------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV-VRRILLGACSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 308 ~~-----------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 369 (415)
|. ++-.++..|-..|+++.|...++......|+.. .|..=.+.+...|+.+.|..++++..+
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 00 455688889999999999999998888766544 666667788899999999999999999
Q ss_pred cccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 370 MERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 370 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+.+|...-..-+....++.+.++|.++.....+.|.
T Consensus 434 lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 434 LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9888776666777888899999999999998888775
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.1e-10 Score=95.66 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=64.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHH
Q 039757 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCL 314 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l 314 (415)
.+...|++++|.+++++- .+.......+..|.+.++++.|.+.++.|.+. .+..+...+..+ .
T Consensus 111 i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~~l~qLa~a----------w 173 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDSILTQLAEA----------W 173 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCHHHHHHHHH----------H
T ss_pred HHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHHHHHHHH----------H
Confidence 334444555554444332 22333334444455555555555555555442 122223333332 2
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch-h
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY-V 392 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~ 392 (415)
+..+.-.+.+.+|..+|+++..+ .+++.+.+.+..++...|++++|.+++++..+.++.++.+...++.+..-.|+. +
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 22222223445555555554444 334444444444555555555555555555544444444444454444444444 3
Q ss_pred hHHHHHHHHhh
Q 039757 393 DAERLRRVMDE 403 (415)
Q Consensus 393 ~A~~~~~~m~~ 403 (415)
.+.+++.++..
T Consensus 254 ~~~~~l~qL~~ 264 (290)
T PF04733_consen 254 AAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.1e-10 Score=95.96 Aligned_cols=195 Identities=10% Similarity=-0.048 Sum_probs=141.8
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHH
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGF 269 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 269 (415)
..+......+...|+.+.|...|++..+. .|.++..|+.+...+...|++++|.+.|++..+..| +..+|..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44666667788899999999999999887 577899999999999999999999999999988766 467788888889
Q ss_pred HccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHH
Q 039757 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILL 348 (415)
Q Consensus 270 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~ 348 (415)
...|++++|.+.|++..+. .|+...... ........++.++|...|++.... .|+...+ .+
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~--------------~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~- 204 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRAL--------------WLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NI- 204 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHH--------------HHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HH-
Confidence 9999999999999998874 565542111 111134567899999999654433 2222222 22
Q ss_pred HHHhhcCChHHHHHHHHHHH-------HcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 349 GACSFHGNVEMGERVTRKVL-------EMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
.....|+...+ +.++.+. +..+....+|..++..+...|++++|...|++..+.++.
T Consensus 205 -~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 205 -VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred -HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 22345555444 3444444 223335578999999999999999999999998877754
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-08 Score=92.04 Aligned_cols=358 Identities=11% Similarity=-0.001 Sum_probs=229.4
Q ss_pred hccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 039757 17 TTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISK 96 (415)
Q Consensus 17 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 96 (415)
+.+.+.-|+..|..+.-++...|+++.+.+.|++.. ..-+. ....|..+...+...|.-..|..+++....
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~---~~~~~------~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL---PFSFG------EHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---Hhhhh------hHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 444466788888888888888999999999998887 44444 567788888888888888888888877654
Q ss_pred cCCCC-chhhHHHHHHHHH-cCCChhHHHHHhcccCC--------CchhhHHHHHHHHHhh-----------CCHHHHHH
Q 039757 97 VGFQS-HVYVNTALVNMYV-SLGFLKDSSKLFDELPE--------RNLVTWNVMITGLVKW-----------GELEYARS 155 (415)
Q Consensus 97 ~g~~~-~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~a~~ 155 (415)
....| |...+...-..|. +.+.+++++.+-..... .....|-.+.-+|... ....++++
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 43223 3333433334444 34556665555444432 2334455554444321 22445666
Q ss_pred HHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHH
Q 039757 156 LFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235 (415)
Q Consensus 156 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 235 (415)
.+++..+.+ +.|......+.--++..++++.|.+..++..+.+... ++..|..|.-.
T Consensus 466 ale~av~~d----------------------~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~-~~~~whLLALv 522 (799)
T KOG4162|consen 466 ALEEAVQFD----------------------PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGD-SAKAWHLLALV 522 (799)
T ss_pred HHHHHHhcC----------------------CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-cHHHHHHHHHH
Confidence 666665433 1222333334444567788999999999998874333 88889999999
Q ss_pred HHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc---------------------CC---
Q 039757 236 YAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKV---------------------GL--- 290 (415)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------------g~--- 290 (415)
+...+++.+|+.+.+...+.-+ |......-+..-..-++.++|+.....+... |+
T Consensus 523 lSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 523 LSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccC
Confidence 9999999999999988776522 2222111122222233333333322222110 00
Q ss_pred ----CCChhhHHHHHH----------------------------------------HHccCCc-----------------
Q 039757 291 ----KPNRVTFLSVLN----------------------------------------ACSHGGL----------------- 309 (415)
Q Consensus 291 ----~p~~~~~~~ll~----------------------------------------~~~~~~~----------------- 309 (415)
.-...++..+.. .+...+.
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l 682 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL 682 (799)
T ss_pred cccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh
Confidence 000111111111 0111111
Q ss_pred ---chHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHH--HHHHHHHcccCCCccHHHHHH
Q 039757 310 ---HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGER--VTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 310 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~l~~ 383 (415)
.|......+...|.+++|.+.|.......| ++.+.+++...+.+.|+...|.. ++..+.+.+|.++..|..++.
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 344455666777888899888876665546 45588999999999999888888 999999999999999999999
Q ss_pred HHHhcCchhhHHHHHHHHhhhcc
Q 039757 384 ILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+.+.|+.+.|.+.|....+...
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhcc
Confidence 99999999999999988776543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-08 Score=87.87 Aligned_cols=311 Identities=11% Similarity=-0.019 Sum_probs=217.6
Q ss_pred chHHHHHHHHHHhhc--CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCC
Q 039757 23 HHTLLFNTLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100 (415)
Q Consensus 23 p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 100 (415)
|+.......+.+++. .++...|...+-.+.. ..-+ |. |......+.+.+...|+.+.|...|+......
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~--~~~l---r~--NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-- 262 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHD--NTTL---RC--NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-- 262 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHh--hccC---Cc--cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--
Confidence 444444444544433 5555555555544431 2222 32 77778889999999999999999999886643
Q ss_pred Cc-hhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 039757 101 SH-VYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176 (415)
Q Consensus 101 ~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 176 (415)
|+ ........-.+.+.|+.+....+...+-. .....|-.-........+++.|+.+-++..+.+..
T Consensus 263 py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r---------- 332 (564)
T KOG1174|consen 263 PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR---------- 332 (564)
T ss_pred hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc----------
Confidence 43 33333334456678888888877776653 23344555556666788999999999888654321
Q ss_pred hccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-
Q 039757 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE- 255 (415)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 255 (415)
+...+-.-...+...++++.|.-.|+..... -|.+..+|.-|+++|...|++.+|.-+-+.....
T Consensus 333 ------------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 333 ------------NHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred ------------cchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 2222223334556788888888888888876 5779999999999999999999998877765554
Q ss_pred CCChhhHHHHH-HHHH-ccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc
Q 039757 256 RKNLVSWTSII-SGFA-MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG 333 (415)
Q Consensus 256 ~~~~~~~~~li-~~~~-~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (415)
+.+..+...+. ..+. ...--++|.++++.-.. +.|+-.-- .+.+...+...|+.+.++.+++.
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~A-------------V~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPA-------------VNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHH-------------HHHHHHHHHhhCccchHHHHHHH
Confidence 34555555542 2222 22334788888888665 35654331 22366678889999999999998
Q ss_pred CCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHH
Q 039757 334 IPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381 (415)
Q Consensus 334 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 381 (415)
.....||....+.|.+.+...+.+.+|++.|..+++.+|.+..+...|
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 888789999999999999999999999999999999999887665544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-08 Score=88.03 Aligned_cols=209 Identities=10% Similarity=-0.139 Sum_probs=138.2
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHh
Q 039757 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214 (415)
Q Consensus 135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (415)
..|..+...+.+.|++++|...|++..+.+ +.+...++.+...+...|+++.|...|+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR----------------------PDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 346666677777777777777777765432 2244566666677777777777777777
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
...+. .|.+..++..+..++...|++++|.+.|++.....|+..........+...++.++|...|++.... ..|+.
T Consensus 123 ~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~ 199 (296)
T PRK11189 123 SVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQ 199 (296)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccc
Confidence 77765 5768888999999999999999999999999887665432222233345577899999999775543 23332
Q ss_pred hhHHHHHHHHccCCcchHHHHHHhHhcCCHHH--HHHHHhcCCCC----Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQ--AEKIALGIPSE----IT-DVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 295 ~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~~~~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
..+ . +. ....|+..+ +.+.+...... .| ....|..+...+...|++++|+..|+++
T Consensus 200 ~~~-~--------------~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 200 WGW-N--------------IV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred cHH-H--------------HH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 221 1 11 222444433 33333222222 12 3457889999999999999999999999
Q ss_pred HHcccCCC-ccHHHHHHHH
Q 039757 368 LEMERGNG-GDYVLMYNIL 385 (415)
Q Consensus 368 ~~~~~~~~-~~~~~l~~~~ 385 (415)
.+.+|++. ..-..++...
T Consensus 263 l~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 263 LANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHhCCchHHHHHHHHHHHH
Confidence 99998643 3333344433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.8e-07 Score=77.01 Aligned_cols=271 Identities=10% Similarity=-0.024 Sum_probs=179.7
Q ss_pred CCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhh---HHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 039757 99 FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVT---WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175 (415)
Q Consensus 99 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 175 (415)
++.++.....+.+++...|+.++|+..|+...--|+.+ .......+.+.|+.+....+...+-..+
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~----------- 296 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV----------- 296 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-----------
Confidence 33445555556666666666666666665544322211 1112222334455554444444432111
Q ss_pred HhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 176 TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
......|..-+......++++.|..+-++.++. .|.+...+-.-...+...|+.++|.=.|+.....
T Consensus 297 -----------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 297 -----------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred -----------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 122233444444556778888888888888776 4556777766677888999999999999998887
Q ss_pred CC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcC
Q 039757 256 RK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 256 ~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (415)
.| +..+|..|+.+|...|++.+|..+-+..... +..+..+... +.+ .+... .-.--++|.++++.-
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL-~g~----------~V~~~-dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL-FGT----------LVLFP-DPRMREKAKKFAEKS 430 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh-hcc----------eeecc-CchhHHHHHHHHHhh
Confidence 55 7889999999999999999998776664432 2223333322 111 11112 122347899999887
Q ss_pred CCCCcCHH-HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 335 PSEITDVV-VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 335 ~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
....|+-. ..+.+...|...|..++++.++++.+...+ +......|++.+...+.+.+|++.|....+.+.+
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 76667544 667788889999999999999999887654 5678899999999999999999999888776654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-08 Score=89.10 Aligned_cols=255 Identities=11% Similarity=-0.087 Sum_probs=187.0
Q ss_pred CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHH
Q 039757 132 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV---VSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPA 199 (415)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~ 199 (415)
.++.....-..-+...+++.+..++++...+.|+ ..+..-|.++...|+..+-. .+-.+.+|-.+.--
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 4455555556666677778888877777765433 33444455555555544433 34456678888887
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHH
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAA 278 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A 278 (415)
|...|+..+|++.|.+.... +|.-...|-.+.+.|+..|.-|.|...+...-+. +...-.+--+.--|.+.++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 88889999999999988876 5667888989999999999999999988877665 22333344455668888999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-------Cc-CHHHHHHHHHH
Q 039757 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-------IT-DVVVRRILLGA 350 (415)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~p-~~~~~~~l~~~ 350 (415)
.+.|.+... +.|+...... .+.-.....+.+.+|..+|+..... .+ -..+++.|..+
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~-------------Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLH-------------ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHHh--cCCCcchhhh-------------hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 999977655 5676654322 2333455678888998888765422 12 34467888889
Q ss_pred HhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
|.+.+.+++|+..+++.+...+.+..++..++-.|.-.|+++.|.+.|.+...
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999887653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-08 Score=78.48 Aligned_cols=200 Identities=12% Similarity=-0.022 Sum_probs=142.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhh
Q 039757 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215 (415)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 215 (415)
+...|.-+|...|+...|..-+++..+.| +-+..++..+...|.+.|..+.|.+.|+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D----------------------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD----------------------PSYYLAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------cccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 46667778888899999988888887655 23445566666777777888888888888
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC
Q 039757 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292 (415)
Q Consensus 216 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 292 (415)
..+. .|.+..+.|.....+|..|++++|...|++....+ .-..+|..+.-+..+.|+.+.|...|++-.+. .|
T Consensus 95 Alsl--~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp 170 (250)
T COG3063 95 ALSL--APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DP 170 (250)
T ss_pred HHhc--CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--Cc
Confidence 8776 56677888888888888888888888888877762 23456777777888888888888888887764 23
Q ss_pred ChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 293 NRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 293 ~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
+...- .-.+.....+.|++-.|...++..... .++..+.-..|+.-...||.+.+-++=..+.+..
T Consensus 171 ~~~~~-------------~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 171 QFPPA-------------LLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred CCChH-------------HHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 32211 112555567778888887777776665 4566666666776777777777777766666666
Q ss_pred cCC
Q 039757 372 RGN 374 (415)
Q Consensus 372 ~~~ 374 (415)
|.+
T Consensus 238 P~s 240 (250)
T COG3063 238 PYS 240 (250)
T ss_pred CCc
Confidence 553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=6e-07 Score=81.16 Aligned_cols=305 Identities=10% Similarity=-0.022 Sum_probs=192.0
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCC-CCchh-hHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHH--
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGF-QSHVY-VNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNV-- 139 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~-- 139 (415)
....|..+...+...|+++.+.+.+....+... .++.. ........+...|++++|.+++++..+ | |...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~ 84 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHL 84 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhH
Confidence 445677777777778888887777777654321 22221 122233456678999999999988764 4 3334432
Q ss_pred -HHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhh
Q 039757 140 -MITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218 (415)
Q Consensus 140 -li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (415)
........+..+.+.+.++.. .++ .+........+...+...|+++.|...++...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~-~~~---------------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 142 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW-APE---------------------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE 142 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc-CcC---------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111112245555566655542 222 122334445566677889999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---Ch--hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC
Q 039757 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK---NL--VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN 293 (415)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 293 (415)
. .|.+...+..+...+...|++++|...+++.....| +. ..|..+...+...|++++|..++++.... .|.
T Consensus 143 ~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~--~~~ 218 (355)
T cd05804 143 L--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP--SAE 218 (355)
T ss_pred h--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--ccC
Confidence 7 576888899999999999999999999999877532 22 23567888999999999999999998643 231
Q ss_pred hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH------HhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 294 RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI------ALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 294 ~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
........... .++.-+...|..+.+.+. ...................++...|+.+.|...++.+
T Consensus 219 ~~~~~~~~~~~--------~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 219 SDPALDLLDAA--------SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred CChHHHHhhHH--------HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 22222110100 022223334433222222 1111111011122235677788999999999999998
Q ss_pred HHcccC---------CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 368 LEMERG---------NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 368 ~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
...... ..........++.+.|++++|.+.+.+.....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 764422 23344455566789999999999998877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.5e-09 Score=86.83 Aligned_cols=228 Identities=12% Similarity=0.038 Sum_probs=179.1
Q ss_pred HHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCC
Q 039757 106 NTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 183 (415)
-+.+..+|.+.|.+.+|++.|+.-.+ |-+.||-.|-++|.+..+...|+.+|.+-.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--------------------- 284 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--------------------- 284 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh---------------------
Confidence 35677888899999999998887654 7778888899999999999999998887764
Q ss_pred ccCCCchHH-HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhh
Q 039757 184 ASTEPSEIT-ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVS 261 (415)
Q Consensus 184 a~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 261 (415)
..|...| .....+.+...++.+.+.++|+...+. .|.+......+...|.-.++++-|.+.|+++..-+ .+...
T Consensus 285 --~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speL 360 (478)
T KOG1129|consen 285 --SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPEL 360 (478)
T ss_pred --cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHH
Confidence 2233333 345566677788888999999988887 46677777777888888899999999999988875 46778
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCC
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNR---VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI 338 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 338 (415)
|+.+.-+|.-.+++|-++.-|.+....--.|+. +.|| |.......|++..|.+.|+-.....
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYN---------------lg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYN---------------LGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhc---------------cceeEEeccchHHHHHHHHHHhccC
Confidence 999999999999999999888887765444443 2333 5556677899999999998776653
Q ss_pred c-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 339 T-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 339 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
| +...++.|.-.-.+.|++++|..+++.+.+..|.
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 3 5568888888888999999999999999888776
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-08 Score=78.10 Aligned_cols=196 Identities=14% Similarity=-0.007 Sum_probs=126.6
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHc
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM 271 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 271 (415)
...+.-.|.+.|+...|..-+++.++. .|.+..++..+...|.+.|..+.|.+-|++.....| +....|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 444555667777777777777777776 566677777777777777777777777777666644 45666777777777
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHH
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGA 350 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 350 (415)
.|++++|...|++.... |+-.+-.. +|..+.....+.|+.+.|...|++.....| ...+.-.+.+.
T Consensus 116 qg~~~eA~q~F~~Al~~---P~Y~~~s~----------t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 116 QGRPEEAMQQFERALAD---PAYGEPSD----------TLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred CCChHHHHHHHHHHHhC---CCCCCcch----------hhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 77777777777776653 22111100 122344445667777777777766555533 33456666667
Q ss_pred HhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
....|++..|..+++.....+....+.....|+.--+.|+.+.|.++=.++.+
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777776666666666666666777777766666555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-07 Score=78.41 Aligned_cols=360 Identities=11% Similarity=0.049 Sum_probs=203.7
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
+.-+..+.|+..|+.+++.-. ..+-+ - ...+-.-+..++.+.|++++|..++..+.+.. .|+...+..|.-
T Consensus 29 Ledfls~rDytGAislLefk~---~~~~E--E---E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAc 99 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL---NLDRE--E---EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLAC 99 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh---ccchh--h---hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHH
Confidence 566777899999999998776 44333 1 11233334556678999999999999987754 567777777777
Q ss_pred HHHcCCChhHHHHHhcccCC-C--------------chhh--------------HHHHHHHHHhhCCHHHHHHHHhhCCC
Q 039757 112 MYVSLGFLKDSSKLFDELPE-R--------------NLVT--------------WNVMITGLVKWGELEYARSLFEEMPC 162 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~-~--------------~~~~--------------~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (415)
++.-.|.+.+|..+-....+ | |..- --+|....-..-.+.+|++++++...
T Consensus 100 c~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 100 CKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778999999998887764 1 1111 11233333344568889999988764
Q ss_pred CCh--hHHHHHH-HHHHhccCCCCcc--------CCCchH-HHHhHHHHHhh----------------c-----------
Q 039757 163 RNV--VSWTGIL-DGYTRMNRSNGAS--------TEPSEI-TILAVLPAIWQ----------------N----------- 203 (415)
Q Consensus 163 ~~~--~~~~~li-~~~~~~~~~~~a~--------~~~~~~-~~~~ll~~~~~----------------~----------- 203 (415)
.+. ...|.-+ -+|.+..-++-+. ..||.. ..+.......+ .
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 322 2222211 2222222222211 122211 11111111111 1
Q ss_pred --------CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHH-----HH
Q 039757 204 --------GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG-----FA 270 (415)
Q Consensus 204 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~-----~~ 270 (415)
.+-+.|.+++--+.+. -+...-.|+-.|.+.+++++|..+.+++....|-......+..+ ..
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~-----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKH-----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhh-----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 1223333333333322 23444556667888888888888887776532322222222111 11
Q ss_pred ccCchHHHHHHHHHHHhcCCC----C----------------ChhhHHHHHHHHccCCcch-HHHHHHhHhcCCHHHHHH
Q 039757 271 MHGMGKAAVENFERMQKVGLK----P----------------NRVTFLSVLNACSHGGLHY-GCLVDMLGRAGRLEQAEK 329 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~~g~~----p----------------~~~~~~~ll~~~~~~~~~~-~~li~~~~~~g~~~~A~~ 329 (415)
......-|.+.|+-.-..+.. | |..+|..-+.+|.-+.+.+ -.+..+++..|.+.+|++
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEE 414 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHH
Confidence 112334455555444333222 1 2223333334444443333 247888999999999999
Q ss_pred HHhcCCCC-CcCHHHHH-HHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 330 IALGIPSE-ITDVVVRR-ILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 330 ~~~~~~~~-~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+|-.+... ..+..+|. .|.++|.+.++++.|..++-+ .+.+ .......+..-|.+.+.+--|.+.|+++...+
T Consensus 415 lf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 415 LFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 99877654 23555664 456778899999998766543 3333 22344456667888999888888888887666
Q ss_pred ccc
Q 039757 406 ALK 408 (415)
Q Consensus 406 ~~~ 408 (415)
..|
T Consensus 492 P~p 494 (557)
T KOG3785|consen 492 PTP 494 (557)
T ss_pred CCc
Confidence 543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-08 Score=84.48 Aligned_cols=257 Identities=13% Similarity=0.063 Sum_probs=163.0
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 154 (415)
++-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++.-...-..|.......+...+...++-+.++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHH
Confidence 344556677777776555 2222212234445556688888898887776665555566666655555554435556666
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH
Q 039757 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234 (415)
Q Consensus 155 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 234 (415)
.-+++...... ...+..........+...|+++.|.+++... .+.......+.
T Consensus 87 ~~l~~~~~~~~--------------------~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vq 139 (290)
T PF04733_consen 87 EELKELLADQA--------------------GESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQ 139 (290)
T ss_dssp HHHHHCCCTS-----------------------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHH
T ss_pred HHHHHHHHhcc--------------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHH
Confidence 66655442210 1122222233334456788999888887653 26777788899
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCChhh---HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcch
Q 039757 235 TYAKCGCIFSALKLFEDISVERKNLVS---WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY 311 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 311 (415)
+|.+.++++.|.+.++.|.+...|... ..+.+..+...+.+++|..+|+++.+. ..++..+.+.
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng------------ 206 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNG------------ 206 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHH------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHH------------
Confidence 999999999999999999886555433 223333333445799999999998764 4566655554
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHcccCC
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNV-EMGERVTRKVLEMERGN 374 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~ 374 (415)
+..+....|++++|.+++++.....| ++.+...++.+....|+. +.+.+++.++....|..
T Consensus 207 --~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 207 --LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp --HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred --HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 55558889999999999988766634 566777777777777777 77888999988877653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5e-08 Score=87.06 Aligned_cols=280 Identities=11% Similarity=-0.018 Sum_probs=197.3
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhh
Q 039757 71 YSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKW 147 (415)
Q Consensus 71 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 147 (415)
...-..-|...++++...++.+...+.. ++....+..-|.++...|+-.+-..+=..+.+ | ...+|-++.--|.-.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 3334444556667777777777776653 45555566566666666665554444444443 3 345677777777777
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 148 GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 148 g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
|+.++|.+.|.+...-| +.-...|.....+++-.+..|.|...|....+.-.-..-+.
T Consensus 326 ~k~seARry~SKat~lD----------------------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~ 383 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLD----------------------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS 383 (611)
T ss_pred cCcHHHHHHHHHHhhcC----------------------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH
Confidence 77777777777664322 22234567777788888888888888877776521111333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc--CCCCChhhHHHHHHHH
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKV--GLKPNRVTFLSVLNAC 304 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~ 304 (415)
.| +.--|.+.++.+.|.++|.+....-| |+...+-+.-.....+.+.+|..+|+..... .+.+...+|..+
T Consensus 384 LY--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~---- 457 (611)
T KOG1173|consen 384 LY--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT---- 457 (611)
T ss_pred HH--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH----
Confidence 44 44558889999999999999887744 7778888888888889999999999887632 233333345543
Q ss_pred ccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 305 SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
++.|.+.|.+.+++++|+..++..... ..+..++.++.-.|...|+++.|.+.|.+.+...|.+..+-..|..
T Consensus 458 ------~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 458 ------LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred ------HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 445899999999999999999877665 3488899999999999999999999999999999887655444444
Q ss_pred HH
Q 039757 384 IL 385 (415)
Q Consensus 384 ~~ 385 (415)
+.
T Consensus 532 ai 533 (611)
T KOG1173|consen 532 AI 533 (611)
T ss_pred HH
Confidence 33
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-07 Score=77.59 Aligned_cols=293 Identities=12% Similarity=0.049 Sum_probs=172.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHH
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNT 107 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 107 (415)
|.+++..+.+..+++.|++++..-. +..++ +....+.|..+|-+..++..|-+.++++-.. .|...-|.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~---Er~p~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYr 81 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSEL---ERSPR------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYR 81 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH---hcCcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHH
Confidence 5566666777777788888777766 45444 6667777777777777777788888777554 34443333
Q ss_pred H-HHHHHHcCCChhHHHHHhcccCC-CchhhHHHHHHH--HHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCC
Q 039757 108 A-LVNMYVSLGFLKDSSKLFDELPE-RNLVTWNVMITG--LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNG 183 (415)
Q Consensus 108 ~-li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 183 (415)
. -...+.+.+.+.+|+++...|.+ ++...-..-+.+ .-..+++..+..++++....+
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en------------------- 142 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN------------------- 142 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-------------------
Confidence 2 23455567777777777777765 222111111111 123456666666666664211
Q ss_pred ccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-C-Chhh
Q 039757 184 ASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-K-NLVS 261 (415)
Q Consensus 184 a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~ 261 (415)
+..+.+...-...+.|+++.|.+-|+...+-+ - ....
T Consensus 143 -----------------------------------------~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllA 181 (459)
T KOG4340|consen 143 -----------------------------------------EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLA 181 (459)
T ss_pred -----------------------------------------ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhH
Confidence 22222222223334455555555555444431 1 1223
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCC-------------CCh--------hhHHHHHHHHccCCcchHHHHHHhHh
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLK-------------PNR--------VTFLSVLNACSHGGLHYGCLVDMLGR 320 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-------------p~~--------~~~~~ll~~~~~~~~~~~~li~~~~~ 320 (415)
||.-+ +..+.|+++.|++...+++.+|++ ||. ..-+.++.+ +|.-...+.+
T Consensus 182 YniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA-------fNLKaAIeyq 253 (459)
T KOG4340|consen 182 YNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA-------FNLKAAIEYQ 253 (459)
T ss_pred HHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH-------hhhhhhhhhh
Confidence 33322 233444555555555555554432 111 111122222 3334445778
Q ss_pred cCCHHHHHHHHhcCCCC---CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHH
Q 039757 321 AGRLEQAEKIALGIPSE---ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 321 ~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
.|+++.|.+.+-.|+.+ ..|++|...+.-.- ..+++.+..+-++-+++.+|-+.++|..++-.||+..-++-|..+
T Consensus 254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred cccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 99999999999999887 55777766554322 345677777778888888888999999999999999999999888
Q ss_pred HHH
Q 039757 398 RRV 400 (415)
Q Consensus 398 ~~~ 400 (415)
+.+
T Consensus 333 LAE 335 (459)
T KOG4340|consen 333 LAE 335 (459)
T ss_pred Hhh
Confidence 765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.4e-08 Score=88.33 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=85.0
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...|...|++++|++..++.....|+ +..|..-.+.+-..|++.+|.+.++.+.+.+..|...-+..+..+.++|+.+
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 667788999999999999988877675 5688888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc
Q 039757 393 DAERLRRVMDERNA 406 (415)
Q Consensus 393 ~A~~~~~~m~~~~~ 406 (415)
+|.+++....+.+.
T Consensus 280 ~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 280 EAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHhhcCCCC
Confidence 99999999888776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-06 Score=78.54 Aligned_cols=303 Identities=11% Similarity=-0.020 Sum_probs=184.9
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC-chhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchh
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD-SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 104 (415)
..|..+...+...|+.+.+...+....+ ..... + + ..........+...|+++.|.+.++...+.. +.+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~-~---~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~ 78 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQ---ALAAR-A---TERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLL 78 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHH---HhccC-C---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHH
Confidence 4566666777778888888777777763 22220 1 2 2223333445677899999999999988764 33444
Q ss_pred hHHH---HHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 039757 105 VNTA---LVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178 (415)
Q Consensus 105 ~~~~---li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 178 (415)
.+.. +.......+..+.+.+.++.... |+ ......+...+...|++++|...+++..+.+
T Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------------- 144 (355)
T cd05804 79 ALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------------- 144 (355)
T ss_pred HHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 4442 22222234566667776665332 22 3344566678889999999999999987533
Q ss_pred cCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 039757 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI--RVSNCLIDTYAKCGCIFSALKLFEDISVER 256 (415)
Q Consensus 179 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 256 (415)
+.+...+..+...+...|++++|...++........+++. ..|..+...+...|++++|.++|++.....
T Consensus 145 --------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 145 --------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred --------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 2234556677778888999999999999888763222232 345578889999999999999999986543
Q ss_pred CChhhH----H--HHHHHHHccCchHHHHHH--HHHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHH
Q 039757 257 KNLVSW----T--SIISGFAMHGMGKAAVEN--FERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327 (415)
Q Consensus 257 ~~~~~~----~--~li~~~~~~~~~~~A~~~--~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A 327 (415)
|..... + .++.-+...|..+.+..+ +........ |. ...+..+ .....+...|+.++|
T Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~------------~~a~~~~~~~~~~~a 283 (355)
T cd05804 217 AESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHF-PDHGLAFNDL------------HAALALAGAGDKDAL 283 (355)
T ss_pred cCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc-CcccchHHHH------------HHHHHHhcCCCHHHH
Confidence 311211 1 223333344433333332 211111111 11 1112211 155667889999999
Q ss_pred HHHHhcCCCC-Cc---------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 328 EKIALGIPSE-IT---------DVVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 328 ~~~~~~~~~~-~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
..+++.+... .. .+...-...-++...|+.++|.+.+.......
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9998776543 11 11122222334568999999999999988755
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-06 Score=78.53 Aligned_cols=350 Identities=9% Similarity=-0.014 Sum_probs=191.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
++.+.+.|++++|.....++. ..++. +...+..=+-+..+.+.++.|+.+.+.-.. ...+...+---..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil---~~~pd------d~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKIL---SIVPD------DEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAY 87 (652)
T ss_pred HHHhccchHHHHHHHHHHHHH---hcCCC------cHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHH
Confidence 456778999999999999998 66655 666666667778888999888855543211 1111111112234
Q ss_pred HHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHH------hccCCCCcc
Q 039757 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYT------RMNRSNGAS 185 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~------~~~~~~~a~ 185 (415)
+..+.+..|+|+..++...+.+..+...-...+-+.|++++|+++|+.+.+.+...+...+.+-+ ..++..+..
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 44588999999999997666666566677778889999999999999997655444333222211 111111111
Q ss_pred CCCchHHHHhHH---HHHhhcCChhHHHHHHhhhhhcCC--------CCCCH-----HHHHHHHHHHHhcCCHHHHHHHH
Q 039757 186 TEPSEITILAVL---PAIWQNGAVRNCQLIHGYGEKRGF--------NAFDI-----RVSNCLIDTYAKCGCIFSALKLF 249 (415)
Q Consensus 186 ~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~-----~~~~~li~~~~~~g~~~~A~~~~ 249 (415)
....+.+|..+. -.+...|++..|++++....+.+. ...+. .+.--|.-.+...|+.++|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 111122333222 234556666666666666622110 00011 11122333455566666666666
Q ss_pred HHhhhhC-CChh----hHHHHHHHHHccCchH-HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcch--HHHHHHhHhc
Q 039757 250 EDISVER-KNLV----SWTSIISGFAMHGMGK-AAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY--GCLVDMLGRA 321 (415)
Q Consensus 250 ~~~~~~~-~~~~----~~~~li~~~~~~~~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~~li~~~~~~ 321 (415)
....... +|.. .-|.|+..-....-++ .++..++..... ........+...- -...+ +.++.+| .
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~---l~~~~l~~Ls~~q--k~~i~~N~~lL~l~--t 320 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK---LAEFLLSKLSKKQ--KQAIYRNNALLALF--T 320 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH---hHHHHHHHHHHHH--HHHHHHHHHHHHHH--h
Confidence 6665552 2321 2233332222221111 111122211110 0000000000000 00011 2233333 4
Q ss_pred CCHHHHHHHHhcCCCCCcCHHHHHHHHHHHh-hcCChHHHHHHHHHHHHcccCC-CccHHHHHHHHHhcCchhhHHHHHH
Q 039757 322 GRLEQAEKIALGIPSEITDVVVRRILLGACS-FHGNVEMGERVTRKVLEMERGN-GGDYVLMYNILAGVGRYVDAERLRR 399 (415)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 399 (415)
+..+.+.++-.......|....-..+..+.. +...+.++.+++....+..|.+ ......++......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5567777777777766565544444444433 2235788888888888877774 4566677888899999999999998
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-06 Score=73.48 Aligned_cols=315 Identities=12% Similarity=0.041 Sum_probs=197.5
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHcCCCCch-hhHHHHHHHHHcCCChhHHHHHhcccCC--Cchh-hHHHHHHHHHhhCC
Q 039757 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHV-YVNTALVNMYVSLGFLKDSSKLFDELPE--RNLV-TWNVMITGLVKWGE 149 (415)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~g~ 149 (415)
+.+.+...|++..|+.-|...++-. |+. .++-.-...|...|+-..|+.=|....+ ||.. .-..-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 3444445555555555555554422 221 1122223445555555555554444443 3321 11122234556666
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCc--hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 150 LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS--EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 150 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
+++|..-|+...+.++. -+....++.+ ..+. .......+..+...|+...|+.....+++. .|.+..
T Consensus 122 le~A~~DF~~vl~~~~s-~~~~~eaqsk--------l~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~ 190 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPS-NGLVLEAQSK--------LALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDAS 190 (504)
T ss_pred HHHHHHHHHHHHhcCCC-cchhHHHHHH--------HHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhH
Confidence 66666666665532210 0000011110 0111 112334455566788888999988888886 677999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
.|..-..+|...|++..|+.=++.+.+.. -+..++.-+-..+...|+.+.++...++-.+ +.||....-..-...-+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHH
Confidence 99999999999999999998887776653 4566677777788888999999999888877 46776554332111100
Q ss_pred CCcchHHH--HHHhHhcCCHHHHHHHHhcCCCCCcC-----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHH
Q 039757 307 GGLHYGCL--VDMLGRAGRLEQAEKIALGIPSEITD-----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379 (415)
Q Consensus 307 ~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 379 (415)
...+| +....+.++|-++....+...+..|. ...+..+-.++...+++.+|++...++++..|.+..++.
T Consensus 269 ---v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 269 ---VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred ---HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 00011 22345567787887777766555444 234556666777889999999999999999999999999
Q ss_pred HHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 380 LMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.-..+|.-...|++|+.-++...+.+-
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999988876553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-07 Score=73.11 Aligned_cols=189 Identities=11% Similarity=0.019 Sum_probs=140.9
Q ss_pred HHHhhcCChhHH-HHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchH
Q 039757 198 PAIWQNGAVRNC-QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276 (415)
Q Consensus 198 ~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 276 (415)
......++.+.. ..+.+++....... +......-...|++.|++++|.+..+.. .+......=...+.+..+.+
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~s-n~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d 154 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGS-NLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFD 154 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccch-hHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHH
Confidence 333334444333 34445555443222 3333444456789999999999999873 33444444455677888999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcC
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHG 355 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~ 355 (415)
-|.+.+++|.+. -+..|.+-+.++ .+......+++.+|.-+|+++.++ .|+..+.+-...++...|
T Consensus 155 ~A~~~lk~mq~i---ded~tLtQLA~a----------wv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 155 LAEKELKKMQQI---DEDATLTQLAQA----------WVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHcc---chHHHHHHHHHH----------HHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 999999999984 677888887777 455566677899999999999997 889999999999999999
Q ss_pred ChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHH-HHHHHHhhh
Q 039757 356 NVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE-RLRRVMDER 404 (415)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 404 (415)
++++|..+++.++...+.++.+...++..-.-.|+-.++. +.+.+....
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999999999999999999998888888886664 445555443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-08 Score=92.48 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCC----chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPER----NLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 89 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
.++..+...|+.|+..||..+|.-||..|+++.|- +|.-|.-. +...++.++.+...+++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677788999999999999999999999999998 88888642 4567888998888888877665 788
Q ss_pred hhHHHHHHHHHHhccCCCC
Q 039757 165 VVSWTGILDGYTRMNRSNG 183 (415)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~ 183 (415)
..||+.|..+|.+.|+...
T Consensus 83 aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hhHHHHHHHHHHhccchHH
Confidence 8899999999998887654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-06 Score=76.38 Aligned_cols=210 Identities=12% Similarity=0.036 Sum_probs=152.8
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-hhHHHHH-----
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTSII----- 266 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li----- 266 (415)
...+.++..+..+++.+.+.+....... .+..-++....+|...|.+.++...-++..+.+... .-|+.+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5567777788889999999999988874 377777888889999999888888777766653322 2233333
Q ss_pred --HHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc-----------chHHHHHHhHhcCCHHHHHHHHhc
Q 039757 267 --SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-----------HYGCLVDMLGRAGRLEQAEKIALG 333 (415)
Q Consensus 267 --~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~ 333 (415)
.+|.+.++++.|...|.+.......|+..+=.....--.+... ....-...+.+.|++..|++.|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3556677899999999887765555555443322211000000 011124556778999999999988
Q ss_pred CCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 334 IPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 334 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
++...| |...|..-.-+|.+.|++..|++=.+..++.+|+....|..-+.++....+|++|.+.|.+..+.+
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777755 667888888889999999999999999999988888888888888888899999999988776655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-06 Score=72.75 Aligned_cols=315 Identities=13% Similarity=0.104 Sum_probs=185.5
Q ss_pred hhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHH-HHHHhcCC
Q 039757 5 NNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI-RTCVTLSY 83 (415)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~-~~~~~~~~ 83 (415)
-....++++.+...- .|.. +|....-..-.+++|++++.+.. ..+ | .-...|.-+ -+|.+..-
T Consensus 137 Ek~~~~fh~~LqD~~---EdqL---SLAsvhYmR~HYQeAIdvYkrvL---~dn----~---ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL---EDQL---SLASVHYMRMHYQEAIDVYKRVL---QDN----P---EYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHHHHHHHhhhH---HHHH---hHHHHHHHHHHHHHHHHHHHHHH---hcC----h---hhhhhHHHHHHHHHhcch
Confidence 344555555554322 2222 23333333446789999999988 333 2 334444433 34567777
Q ss_pred CchHHHHHHHHHHcCCCCchhhHHHHHHHHHc--CCChhH--HHHHhcccCC--------------------------C-
Q 039757 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVS--LGFLKD--SSKLFDELPE--------------------------R- 132 (415)
Q Consensus 84 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~--a~~~~~~~~~--------------------------~- 132 (415)
++-+.+++..-.+. ++.+....|.......| .|+..+ -..+.+...+ |
T Consensus 201 ydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~ 279 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS 279 (557)
T ss_pred hhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH
Confidence 78888888777654 23333444433333332 232211 1122222211 1
Q ss_pred ----chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHH-----HHhhc
Q 039757 133 ----NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLP-----AIWQN 203 (415)
Q Consensus 133 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~-----~~~~~ 203 (415)
=+..--.|+--|.+.+++.+|..+.+++...+ |-+.....+.. -....
T Consensus 280 L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Ptt-----------------------P~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 280 LMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTT-----------------------PYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HHhhChHhhhhheeeecccccHHHHHHHHhhcCCCC-----------------------hHHHHHHHHHHHHhhhhcCcH
Confidence 12233345555778888888888888875433 22222222222 22223
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHH
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
....-|.+.|+..-..+..-.+..-..++..++.-..++++....++.+..-=. |-..--.+.++++..|++.+|+++|
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 345567777777766666555556667777788888888888888888776522 2222234778888899999999998
Q ss_pred HHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHH
Q 039757 283 ERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGER 362 (415)
Q Consensus 283 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 362 (415)
-+.....+ -|..+|.+++.-| |.+.++.+.|.+++-.+....-.......+..-|.+.+++--|.+
T Consensus 417 ~~is~~~i-kn~~~Y~s~LArC-------------yi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 417 IRISGPEI-KNKILYKSMLARC-------------YIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred hhhcChhh-hhhHHHHHHHHHH-------------HHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66654322 3566776665544 889999999998887665431122234455566888888888888
Q ss_pred HHHHHHHcccC
Q 039757 363 VTRKVLEMERG 373 (415)
Q Consensus 363 ~~~~~~~~~~~ 373 (415)
.|+.+...+|.
T Consensus 483 AFd~lE~lDP~ 493 (557)
T KOG3785|consen 483 AFDELEILDPT 493 (557)
T ss_pred hhhHHHccCCC
Confidence 88888777765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=79.92 Aligned_cols=169 Identities=11% Similarity=-0.013 Sum_probs=125.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh----hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh--
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT-- 296 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-- 296 (415)
+.....+..++..+...|++++|...|+++....|+. ..+..+..++...|++++|...++++.+. .|+...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 3366777778888889999999999999887764532 35677888889999999999999998875 344332
Q ss_pred HHHHHHHHccCCcchHHHHHHhH--------hcCCHHHHHHHHhcCCCCCcCHH-HH-----------------HHHHHH
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLG--------RAGRLEQAEKIALGIPSEITDVV-VR-----------------RILLGA 350 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~p~~~-~~-----------------~~l~~~ 350 (415)
+.... +...+. ..|+.++|.+.++.+....|+.. .+ ..+...
T Consensus 108 ~a~~~------------~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 108 YAYYL------------RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred HHHHH------------HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 222233 33788999999988876655432 22 134556
Q ss_pred HhhcCChHHHHHHHHHHHHcccCC---CccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 351 CSFHGNVEMGERVTRKVLEMERGN---GGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.+.|++++|+..++.+.+..|.+ ...+..++.++...|++++|..+++.+....
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 788999999999999999987653 4688999999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-06 Score=77.02 Aligned_cols=364 Identities=11% Similarity=0.029 Sum_probs=207.8
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
+++.+.|.+.-..+...+ .-|...+..=+.++.+.+.+++|+.+.+.-. ..... +...| .=.-+..+.
T Consensus 25 ~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~------~~~~f-EKAYc~Yrl 92 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVI------NSFFF-EKAYCEYRL 92 (652)
T ss_pred chHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhc------chhhH-HHHHHHHHc
Confidence 455666777777777655 3455667888888999999999996655432 10101 11111 112233466
Q ss_pred CCCchHHHHHHHHHHcCCCC-chhhHHHHHHHHHcCCChhHHHHHhcccCCC----------------------------
Q 039757 82 SYPNLGTQLHAVISKVGFQS-HVYVNTALVNMYVSLGFLKDSSKLFDELPER---------------------------- 132 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------------- 132 (415)
+..++|+..++ |..+ |..+...-...+.+.|++++|..+|+.+.+.
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 77888888777 2233 3335555566777888888888888887421
Q ss_pred ---chhhHH---HHHHHHHhhCCHHHHHHHHhhCC--------CC-----ChhH-----HHHHHHHHHhccCCCCcc---
Q 039757 133 ---NLVTWN---VMITGLVKWGELEYARSLFEEMP--------CR-----NVVS-----WTGILDGYTRMNRSNGAS--- 185 (415)
Q Consensus 133 ---~~~~~~---~li~~~~~~g~~~~a~~~~~~m~--------~~-----~~~~-----~~~li~~~~~~~~~~~a~--- 185 (415)
...+|. ...-.++..|++.+|+++++... .. ++.. --.|..++...|+.++|.
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 011222 22334567899999999998872 11 1111 122445566778877776
Q ss_pred ------CCCchHH----HHhHHHHHhhcCChh----------------H--------------------------HHHHH
Q 039757 186 ------TEPSEIT----ILAVLPAIWQNGAVR----------------N--------------------------CQLIH 213 (415)
Q Consensus 186 ------~~~~~~~----~~~ll~~~~~~~~~~----------------~--------------------------a~~~~ 213 (415)
..+|+.. -|.++..-....-.+ . ..++.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2222211 111111100000000 0 00111
Q ss_pred hhhhhcCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhhCCC--hhhHHHHHHHHHccCchHHHHHHHH------
Q 039757 214 GYGEKRGFNAFDIRVSNCLIDTYAKC--GCIFSALKLFEDISVERKN--LVSWTSIISGFAMHGMGKAAVENFE------ 283 (415)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~------ 283 (415)
+.-....... ....+.+++..+.+. ....+|.+++...-+..|. ...--+++......|+++.|..++.
T Consensus 328 ~~~a~lp~~~-p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 328 ELSASLPGMS-PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHHHhCCccC-chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 1111111111 123333444333222 2466677777766655443 3456667778889999999999999
Q ss_pred --HHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-------CcC-HHHHHHHHHHHhh
Q 039757 284 --RMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-------ITD-VVVRRILLGACSF 353 (415)
Q Consensus 284 --~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~p~-~~~~~~l~~~~~~ 353 (415)
.+.+.+..|..+.+ ++..|.+.++-+.|..++.+.... .+. ..++.-+...-.+
T Consensus 407 ~ss~~~~~~~P~~V~a----------------iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 407 KSSILEAKHLPGTVGA----------------IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred hhhhhhhccChhHHHH----------------HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 55565666655543 455566666665555555433221 121 2244444445567
Q ss_pred cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHH
Q 039757 354 HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400 (415)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 400 (415)
.|+-++|...++++.+.++++..+...++.+|++. +.+.|..+-+.
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 89999999999999999999999999999999875 45566655443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.6e-07 Score=77.27 Aligned_cols=182 Identities=12% Similarity=-0.019 Sum_probs=134.1
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChh---
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI---RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV--- 260 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 260 (415)
......+......+...|+++.|...++.+... .|.++ .++..+..++...|++++|...++++.+..|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 344566778888899999999999999999887 34333 4677889999999999999999999988755322
Q ss_pred -hHHHHHHHHHcc--------CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHc----cCCcchHHHHHHhHhcCCHHHH
Q 039757 261 -SWTSIISGFAMH--------GMGKAAVENFERMQKVGLKPNRVTFLSVLNACS----HGGLHYGCLVDMLGRAGRLEQA 327 (415)
Q Consensus 261 -~~~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~~li~~~~~~g~~~~A 327 (415)
++..+..++... |++++|.+.|+++... .|+.......+.... ..+.....+...|.+.|++++|
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA 185 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 455555666554 7899999999999875 555433222111100 0000112356778999999999
Q ss_pred HHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 328 EKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 328 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
...++......|+ ...+..+..++...|++++|..+++.+....|
T Consensus 186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 186 INRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999888766443 46888999999999999999999998877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.3e-06 Score=77.73 Aligned_cols=235 Identities=13% Similarity=0.115 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
.|+.--+..+.++...+-+.+-+++++++. -.+ + +.+.+...-|.|+-...+. +..++.++.+++-... .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIv---L~~-S--~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIV---LDN-S--VFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHh---cCC-c--ccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh
Confidence 344444555556666666666666665554 110 1 1111222333333333332 2334444544443332 122
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCC
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 182 (415)
+.......+-+++|..+|+... .+....+.||. .-+.++.|.++-++..+| ..|+.+..+-.+.|...
T Consensus 1054 ------ia~iai~~~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 ------IAEIAIENQLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred ------HHHHHhhhhHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchH
Confidence 2233344445566666665442 22223333332 235566666666655443 45777778877777777
Q ss_pred Ccc----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 039757 183 GAS----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258 (415)
Q Consensus 183 ~a~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 258 (415)
+|. ..-|+..|..++....+.|.+++-.+++....+... .+.+-+.||-+|++.+++.+.++++. +||
T Consensus 1122 dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~---E~~id~eLi~AyAkt~rl~elE~fi~-----gpN 1193 (1666)
T KOG0985|consen 1122 DAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR---EPYIDSELIFAYAKTNRLTELEEFIA-----GPN 1193 (1666)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc---CccchHHHHHHHHHhchHHHHHHHhc-----CCC
Confidence 776 455677788888888888888888888887777643 44555678888888888887766653 266
Q ss_pred hhhHHHHHHHHHccCchHHHHHHHHHH
Q 039757 259 LVSWTSIISGFAMHGMGKAAVENFERM 285 (415)
Q Consensus 259 ~~~~~~li~~~~~~~~~~~A~~~~~~m 285 (415)
......+.+-|...|.++.|.-+|...
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 666677777777777777776666543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-07 Score=83.08 Aligned_cols=204 Identities=11% Similarity=0.019 Sum_probs=166.9
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHH
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAA 278 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A 278 (415)
+.+.|++-+|.-.|+..++. .|.+...|.-|.......++=..|+..+++..+..| |....-.|.-+|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 46788899999999999998 687899999999999999999999999999988765 667788888999999998999
Q ss_pred HHHHHHHHhcC-------------------CCCChhhHHHHHHHHc----cCC-----cchHHHHHHhHhcCCHHHHHHH
Q 039757 279 VENFERMQKVG-------------------LKPNRVTFLSVLNACS----HGG-----LHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 279 ~~~~~~m~~~g-------------------~~p~~~~~~~ll~~~~----~~~-----~~~~~li~~~~~~g~~~~A~~~ 330 (415)
+..|+.-+... -.++...+..+-..|. ..+ +.+..|.-.|--.|++++|.+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99888874432 0133333333332222 111 2677788889999999999999
Q ss_pred HhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 331 ALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 331 ~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
|+......| |...|+.|...++...+.++|+..++++++..|.-.++...|+..|...|.|.+|...|=+.....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 998877767 566999999999999999999999999999999999999999999999999999999887765543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-06 Score=79.88 Aligned_cols=341 Identities=14% Similarity=0.087 Sum_probs=178.8
Q ss_pred chHHHHHHHHH--HhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHc-C-
Q 039757 23 HHTLLFNTLLH--FYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV-G- 98 (415)
Q Consensus 23 p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g- 98 (415)
=|..|-..+++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+..+.+-|.-.+-.|... |
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 34555555554 6788899999999988886 7789999999999999888887776666431 1
Q ss_pred -------CCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCc---------------------------hhhHHHHHHHH
Q 039757 99 -------FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN---------------------------LVTWNVMITGL 144 (415)
Q Consensus 99 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~li~~~ 144 (415)
-.|+ .+-....-.-...|.+++|+.+|++.++-| ..||.....-+
T Consensus 790 RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 790 RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 1121 111122223345677777777776665311 12444455555
Q ss_pred HhhCCHHHHHHHHhhCCCCChhHHHHH------HHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhh
Q 039757 145 VKWGELEYARSLFEEMPCRNVVSWTGI------LDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~~~~~~~l------i~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (415)
-.+++.+.|++.|++...+-...+..| |.-|.+ ...|+..|.-...-+...|+.+.|..+|.....
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~--------~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVR--------RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHH--------hccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 555566666666655432221111111 111221 122222333333333444555555555543322
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcC--------C
Q 039757 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG--------L 290 (415)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--------~ 290 (415)
|.++++..|-.|+.++|-++-++- .|....-.|.+.|-..|++.+|...|.+.+... -
T Consensus 941 ----------~fs~VrI~C~qGk~~kAa~iA~es----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn 1006 (1416)
T KOG3617|consen 941 ----------YFSMVRIKCIQGKTDKAARIAEES----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN 1006 (1416)
T ss_pred ----------hhhheeeEeeccCchHHHHHHHhc----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233444444445555554443332 344445556666666666666666665543210 0
Q ss_pred CCChhhHH-----------HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc---------CCCC---CcCHHHHHHH
Q 039757 291 KPNRVTFL-----------SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG---------IPSE---ITDVVVRRIL 347 (415)
Q Consensus 291 ~p~~~~~~-----------~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------~~~~---~p~~~~~~~l 347 (415)
..+...++ +....|...|.-...-+..|-++|.+.+|+++--+ +.+. ..|+...+.-
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 00001111 01111111111233456668888888888776211 1111 2356666666
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcc---------------------cC------C----CccHHHHHHHHHhcCchhhHHH
Q 039757 348 LGACSFHGNVEMGERVTRKVLEME---------------------RG------N----GGDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 348 ~~~~~~~~~~~~a~~~~~~~~~~~---------------------~~------~----~~~~~~l~~~~~~~g~~~~A~~ 396 (415)
..-++...++++|..++-...+.. .| + ......+...|.++|.|..|.+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 666777777777776665443211 11 1 1356678888899998887776
Q ss_pred HHHH
Q 039757 397 LRRV 400 (415)
Q Consensus 397 ~~~~ 400 (415)
-|-+
T Consensus 1167 KfTQ 1170 (1416)
T KOG3617|consen 1167 KFTQ 1170 (1416)
T ss_pred HHhh
Confidence 5544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-09 Score=57.54 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=23.2
Q ss_pred CCCCchhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 98 GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 98 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-05 Score=80.74 Aligned_cols=205 Identities=11% Similarity=0.025 Sum_probs=136.0
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhc----CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----CC--Ch
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKR----GFN--AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----RK--NL 259 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~--~~ 259 (415)
....+...+...|+++.|...+++.... +.. +.....+..+...+...|++++|...+++.... ++ ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 3445566778899999999988876653 211 112334556667788889999999999887553 12 12
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCC
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKP-NRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI 338 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 338 (415)
..+..+...+...|++++|...+++.....-.. ....+...... ..+..+...|+.+.|.+.+.......
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~~~~A~~~l~~~~~~~ 683 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK---------VRLIYWQMTGDKEAAANWLRQAPKPE 683 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH---------HHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 345556677888999999999998886531111 11111111000 01233556899999999987655431
Q ss_pred -cCH----HHHHHHHHHHhhcCChHHHHHHHHHHHHcccC------CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 339 -TDV----VVRRILLGACSFHGNVEMGERVTRKVLEMERG------NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 339 -p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
... ..+..+..++...|++++|...++++...... ...+...+..++.+.|+.++|...+.+..+..
T Consensus 684 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 684 FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 111 12345677788999999999999998875422 22466678888999999999999999887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-05 Score=72.85 Aligned_cols=368 Identities=14% Similarity=0.073 Sum_probs=226.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhH
Q 039757 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 106 (415)
.|-.++..|- .+++...+...+.+. ..-++ ...|.....-.+...|+-++|...........+ -+...|
T Consensus 10 lF~~~lk~yE-~kQYkkgLK~~~~iL---~k~~e------HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCw 78 (700)
T KOG1156|consen 10 LFRRALKCYE-TKQYKKGLKLIKQIL---KKFPE------HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCW 78 (700)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHH---HhCCc------cchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhH
Confidence 4555555554 678888888888887 53333 445555555566778888999988887766543 355567
Q ss_pred HHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhccC
Q 039757 107 TALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~ 180 (415)
..+.-.+-...++++|++.|..... .|...|.-+.-.-+..|+++.....-.+..+ .....|.....++.-.|+
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 7666666666789999999998764 4566777777677777888877776666553 334567777766666666
Q ss_pred CCCcc-----------CCCchHHHHhHHHH------HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 039757 181 SNGAS-----------TEPSEITILAVLPA------IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIF 243 (415)
Q Consensus 181 ~~~a~-----------~~~~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (415)
...|. ..|+...+...... ....|.++.|.+.+..-...- ......-..-...+.+.++++
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHH
Confidence 66665 23555554433322 245666677766666555441 112233344566778888999
Q ss_pred HHHHHHHHhhhhCCChhhHH-HHHHHHHccCchHHHH-HHHHHHHhc---CCCCChhhHH------------HHHHHHcc
Q 039757 244 SALKLFEDISVERKNLVSWT-SIISGFAMHGMGKAAV-ENFERMQKV---GLKPNRVTFL------------SVLNACSH 306 (415)
Q Consensus 244 ~A~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~-~~~~~m~~~---g~~p~~~~~~------------~ll~~~~~ 306 (415)
+|..++..+....||-.-|. .+..++.+-.+.-++. .+|....+. .-.|-....+ -.+.-..+
T Consensus 237 eA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 237 EAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 99999998888777655544 4444554333333333 666665443 1111111111 11111111
Q ss_pred CCc--chHHHHHHhHhcCCHHHHHH----HHhcCCC------------CCcCHHHH--HHHHHHHhhcCChHHHHHHHHH
Q 039757 307 GGL--HYGCLVDMLGRAGRLEQAEK----IALGIPS------------EITDVVVR--RILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 307 ~~~--~~~~li~~~~~~g~~~~A~~----~~~~~~~------------~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
.|. .+..+...|-.-...+-..+ +...+.. ..|....| -.++..+-..|+++.|..+++.
T Consensus 317 Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred cCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 111 23334433333222221111 1111111 14555544 4567778899999999999999
Q ss_pred HHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
++.+-|.-.+.|..-++.+...|..++|..++++..+.+..
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 99988877778888889999999999999999998876644
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-07 Score=81.23 Aligned_cols=253 Identities=13% Similarity=0.045 Sum_probs=175.6
Q ss_pred HHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHH
Q 039757 76 RTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEY 152 (415)
Q Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 152 (415)
.-+.+.|++..|.-.|+..++.. |-+...|.-|.......++-..|+..+++..+ | |....-+|.-.|...|.-..
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 34567888999999999998875 45788899888888888888889998888876 3 45677778888899999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHH
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 232 (415)
|+..|+........ | .+......++....+ .............++|-++........|+.++..|
T Consensus 372 Al~~L~~Wi~~~p~-y-----~~l~~a~~~~~~~~~---------~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-Y-----VHLVSAGENEDFENT---------KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred HHHHHHHHHHhCcc-c-----hhccccCccccccCC---------cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 99998876421100 0 000000000000000 11122223344445555555543333599999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh--hHHHHHHHHccCCc
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV--TFLSVLNACSHGGL 309 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~ 309 (415)
.-.|--.|++++|.+.|+.+...+| |...||.|...++...+.++|+..|++..+. +|+-+ -||
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN----------- 503 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN----------- 503 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh-----------
Confidence 9999999999999999999988866 6788999999999999999999999999985 66654 444
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCC---CC--------CcCHHHHHHHHHHHhhcCChHHHH
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIP---SE--------ITDVVVRRILLGACSFHGNVEMGE 361 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~--------~p~~~~~~~l~~~~~~~~~~~~a~ 361 (415)
|.-.|...|.+++|.+.|-+.. .+ .++...|..|=.++...++.+.+.
T Consensus 504 ----lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 504 ----LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ----hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 5556888999999988764322 11 223356666666666666665443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-06 Score=85.61 Aligned_cols=236 Identities=10% Similarity=0.073 Sum_probs=142.0
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHH
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYT 176 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~ 176 (415)
+...+..|+..+...+++++|.++.+...+ |+ ...|..+...+...++.+.+..+ .+.. +...-|+.+-..|.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence 455677777878788888888888776554 33 33444444466667776666555 2221 11112222222222
Q ss_pred hccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 039757 177 RMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256 (415)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 256 (415)
..++ ..-+...+..+..+|.+.|+.+++..+++++++. .|.++.+.|.+...|... ++++|.+++.+....
T Consensus 108 ~i~~-----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 108 KILL-----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHh-----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 2222 1122335666666666777777777777777766 355666777777776666 677777666665441
Q ss_pred CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC
Q 039757 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 257 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (415)
|...+++.++..+|.++... .|+...+- .++.+.+..
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f-----------------------------~~i~~ki~~ 215 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFF-----------------------------LRIERKVLG 215 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhc--CcccchHH-----------------------------HHHHHHHHh
Confidence 55555666677777776663 34433321 111111111
Q ss_pred C---CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh
Q 039757 337 E---ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393 (415)
Q Consensus 337 ~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 393 (415)
. ..-+.++..+-..|-..++++++..+++.+++..+.|..+...++..|. +++..
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 1 1234456666677888889999999999999999998888888888886 44444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.1e-07 Score=81.99 Aligned_cols=307 Identities=13% Similarity=0.086 Sum_probs=192.1
Q ss_pred HHHHHhHhhccC------CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 9 TRIHSHLLTTNS------LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 9 ~~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
+..+++++..|. ++.+.--=-+-|..|.+.|.+..|.+.-..=. ... . |......+..++.+..
T Consensus 593 ~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~-----~l~--~---de~il~~ia~alik~e 662 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDE-----ELL--A---DEEILEHIAAALIKGE 662 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHH-----Hhh--c---cHHHHHHHHHHHHhhH
Confidence 445667776654 22222222356788999999988877543211 112 3 6777777777777777
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC-hhHHHHHhcccCCC--------------chhhH----------
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDELPER--------------NLVTW---------- 137 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~--------------~~~~~---------- 137 (415)
-+++|-.+|+++.. |+. .+.+| +.|+ +.+|.++-+-.-.. -...|
T Consensus 663 lydkagdlfeki~d----~dk-----ale~f-kkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHD----FDK-----ALECF-KKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHhhhhHHHHhhC----HHH-----HHHHH-HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 77777777776632 221 22222 2222 33333332211100 00011
Q ss_pred ---HHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHh
Q 039757 138 ---NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214 (415)
Q Consensus 138 ---~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (415)
-..+.+......|.+|+.+++.+....+ ...-|..+...|+..|+++.|+++|-
T Consensus 733 ~~~~kaieaai~akew~kai~ildniqdqk~-----------------------~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 733 NCLIKAIEAAIGAKEWKKAISILDNIQDQKT-----------------------ASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-----------------------ccccchHHHHHhccchhHHHHHHHHH
Confidence 1123333455666666666666653221 22235667778889999999999886
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
+. ..++-.|.+|.+.|+|++|.++-++..........|-+-..-+-++|++.+|+++|-... .|+.
T Consensus 790 e~----------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~ 855 (1636)
T KOG3616|consen 790 EA----------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK 855 (1636)
T ss_pred hc----------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH
Confidence 43 234567889999999999999988877632345567777777888999999998886543 3554
Q ss_pred hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC
Q 039757 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 295 ~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (415)
-|.+|-+.|..|..+++.++-... --..|...+..-|...|+...|...|-+.-
T Consensus 856 -------------------aiqmydk~~~~ddmirlv~k~h~d-~l~dt~~~f~~e~e~~g~lkaae~~flea~------ 909 (1636)
T KOG3616|consen 856 -------------------AIQMYDKHGLDDDMIRLVEKHHGD-HLHDTHKHFAKELEAEGDLKAAEEHFLEAG------ 909 (1636)
T ss_pred -------------------HHHHHHhhCcchHHHHHHHHhChh-hhhHHHHHHHHHHHhccChhHHHHHHHhhh------
Confidence 456688999999999888766543 234477778888888899888887776543
Q ss_pred CccHHHHHHHHHhcCchhhHHHHHHH
Q 039757 375 GGDYVLMYNILAGVGRYVDAERLRRV 400 (415)
Q Consensus 375 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 400 (415)
-|..-+.+|..++-|++|.++-+.
T Consensus 910 --d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 910 --DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred --hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 355566777777777777776544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-08 Score=56.22 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=31.3
Q ss_pred CCcchHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 039757 20 SLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQ 52 (415)
Q Consensus 20 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 52 (415)
++.||..+||+||++|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 489999999999999999999999999999983
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.7e-05 Score=68.35 Aligned_cols=350 Identities=11% Similarity=0.077 Sum_probs=199.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchh
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 104 (415)
+..|-..+..+.+.|++..-...|++... ...+. . ....|...+......+-++.+..+++.-++. .| .
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALr--aLpvt--q---H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~ 170 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALR--ALPVT--Q---HDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--E 170 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHH--hCchH--h---hccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--H
Confidence 35666777777888888888888888873 23333 3 6677888888888888888999999988764 23 3
Q ss_pred hHHHHHHHHHcCCChhHHHHHhcccCC----------CchhhHHHHHHHHHhhC---CHHHHHHHHhhCCC--CC--hhH
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFDELPE----------RNLVTWNVMITGLVKWG---ELEYARSLFEEMPC--RN--VVS 167 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~--~~--~~~ 167 (415)
.-+-.|..++..+++++|.+.+..... .+-..|..+-....+.- .--....+++.+.. +| ...
T Consensus 171 ~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~L 250 (835)
T KOG2047|consen 171 AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFL 250 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHH
Confidence 366678888899999999988888763 23345555555444332 22234455556553 23 356
Q ss_pred HHHHHHHHHhccCCCCcc--------CCCchHHHHhHHHHHhh----------------cC------ChhHHHHHHhhhh
Q 039757 168 WTGILDGYTRMNRSNGAS--------TEPSEITILAVLPAIWQ----------------NG------AVRNCQLIHGYGE 217 (415)
Q Consensus 168 ~~~li~~~~~~~~~~~a~--------~~~~~~~~~~ll~~~~~----------------~~------~~~~a~~~~~~~~ 217 (415)
|+.|.+-|.+.|.+++|. ......-|..+..+|+. .+ +++....-|+.+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 889999999999999987 11111122222222211 11 1222222333333
Q ss_pred hcC----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CC------ChhhHHHHHHHHHccCchHHHHH
Q 039757 218 KRG----------FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RK------NLVSWTSIISGFAMHGMGKAAVE 280 (415)
Q Consensus 218 ~~~----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~~~li~~~~~~~~~~~A~~ 280 (415)
..+ ..|.+...|..-+. +..|+..+-...|.++... .| -...|..+...|-..|+.+.|..
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 221 02223333332222 2346677777777776655 12 22458889999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-------------------CcCH
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-------------------ITDV 341 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~p~~ 341 (415)
+|++..+..+ .+..-|-.. |-.-..+-.+..+++.|+++.+..... ..+.
T Consensus 409 ifeka~~V~y----~~v~dLa~v-------w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 409 IFEKATKVPY----KTVEDLAEV-------WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HHHHhhcCCc----cchHHHHHH-------HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 9999877532 222222222 112334445556666666665544322 1122
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHH
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 398 (415)
..|...+......|-++....+++++++...-.+......+..+....-++++.+++
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444555555555555555554444433333333333334444444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-05 Score=71.50 Aligned_cols=346 Identities=13% Similarity=0.023 Sum_probs=212.1
Q ss_pred HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc-hhhHHHHHH
Q 039757 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-VYVNTALVN 111 (415)
Q Consensus 33 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~ 111 (415)
.+....|+++.|+.+|-..+ ...+. |...|..-..+++..|++++|.+=-.+-++. .|+ ..-|+-...
T Consensus 10 naa~s~~d~~~ai~~~t~ai---~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAI---MLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGA 78 (539)
T ss_pred HhhcccccHHHHHHHHHHHH---ccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHH
Confidence 45677999999999999988 44333 8889999999999999999888777666654 454 566888888
Q ss_pred HHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCC-----CCCh--------hHHHHHHHHH
Q 039757 112 MYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMP-----CRNV--------VSWTGILDGY 175 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~--------~~~~~li~~~ 175 (415)
++.-.|++++|+..|.+-.+ | +...++.+..++... . ++.+.|..-. ..++ ..|..++..+
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 88889999999999988765 3 455677777766111 1 1111111100 0111 1233333332
Q ss_pred HhccCCCCccCCCchHHHHhHHHHHhhcCChhHH-HHHH------------hhhhhcCC----------CCCCHHHHHHH
Q 039757 176 TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNC-QLIH------------GYGEKRGF----------NAFDIRVSNCL 232 (415)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~------------~~~~~~~~----------~~~~~~~~~~l 232 (415)
-+....-..... +.. ++.+.......+.- ...- .......- ......-...+
T Consensus 156 ~~~p~~l~~~l~-d~r----~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 156 QKNPTSLKLYLN-DPR----LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred hcCcHhhhcccc-cHH----HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 221100000000 000 01110000000000 0000 00000000 00012234567
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchH
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG 312 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 312 (415)
.++.-+..+++.|.+-+....+...++.-++....+|...|.+.+....-....+.|.. ...-|+.+-.++.+
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r------ 303 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR------ 303 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH------
Confidence 77888888999999999988876544455777788899998888777776666655432 33445555555443
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCC--CcCHHHH-------------------------HHHHHHHhhcCChHHHHHHHH
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSE--ITDVVVR-------------------------RILLGACSFHGNVEMGERVTR 365 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~ 365 (415)
+..+|.+.++++.|+..|++.... .|+..+- ..=...+.+.|++..|+..+.
T Consensus 304 -~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 304 -LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred -hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 444677778888888887765443 2221111 111345678899999999999
Q ss_pred HHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+++..+|.+...|....-+|.+.|.+..|..-.+...+.+
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998776666554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-05 Score=73.67 Aligned_cols=224 Identities=13% Similarity=0.042 Sum_probs=144.1
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHH
Q 039757 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELE 151 (415)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 151 (415)
+...+...|-...|..+++++. .|.-.|.+|...|+.++|..+..+..+ ||...|..+.+.....--++
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 3344444455555555544432 233345555555555555555444332 44445555555544444455
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHH
Q 039757 152 YARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231 (415)
Q Consensus 152 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 231 (415)
+|.++++.... ..-..+.....+.++++++.+.++.-.+. .|....+|-.
T Consensus 475 kawElsn~~sa----------------------------rA~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~ 524 (777)
T KOG1128|consen 475 KAWELSNYISA----------------------------RAQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFG 524 (777)
T ss_pred HHHHHhhhhhH----------------------------HHHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHh
Confidence 55555544421 11112222234478899999999888876 5768899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcc
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLH 310 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 310 (415)
+.-+..+.++++.|.+.|.......|| ...||.+-.+|.+.++-.+|...+.+..+.+..|-...-|
T Consensus 525 ~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN------------ 592 (777)
T KOG1128|consen 525 LGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN------------ 592 (777)
T ss_pred ccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec------------
Confidence 999999999999999999998887675 5679999999999999999999999999876554443333
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC---CcCHHHHHHHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE---ITDVVVRRILLGAC 351 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~ 351 (415)
.+....+.|.+++|++.+.++..- ..|......++...
T Consensus 593 ---ymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 593 ---YMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred ---hhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 444567899999999998776543 22444444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-06 Score=83.16 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=166.9
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHc-CCC---CchhhHHHHHHHHHcCCChhHHHHHhcccCC-Cc-hhhHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKV-GFQ---SHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RN-LVTWNVM 140 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~-~~~~~~l 140 (415)
+...|-.-|......++.++|++++++++.. ++. --...|.++++.-...|.-+...++|++..+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 6678999999999999999999999998653 111 1235688888888888988999999999887 23 4578999
Q ss_pred HHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcC
Q 039757 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220 (415)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 220 (415)
...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+.++-+.|..++.+..+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF----------------------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~- 1593 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF----------------------GQTRKVWIMYADFLLRQNEAEAARELLKRALKS- 1593 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh----------------------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-
Confidence 999999999999999999997532 123345666666777788888899999988886
Q ss_pred CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 221 FNAF--DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 221 ~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
.|. ......-.+..-.+.|+.+++..+|+......| -...|+..|+.=.++|+.+.+..+|++....++.|-..-+
T Consensus 1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 443 455566677778889999999999999888744 5778999999999999999999999999999888776543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0001 Score=71.04 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcC--CCCchhhHHHHHHHHHcCCChhHHH
Q 039757 46 LLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG--FQSHVYVNTALVNMYVSLGFLKDSS 123 (415)
Q Consensus 46 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~ 123 (415)
++.+... +.++++.. |+...+..++++...+-+.+-.++++++.-.. +.-+...-|.|+-. +-.-+..++.
T Consensus 968 qLiDqVv---~tal~E~~---dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm 1040 (1666)
T KOG0985|consen 968 QLIDQVV---QTALPETQ---DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVM 1040 (1666)
T ss_pred HHHHHHH---HhcCCccC---ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHH
Confidence 3444555 44444444 88888888999999999999999999986432 11222233333333 3344666677
Q ss_pred HHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 124 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 124 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
++.+++..-|.. .+...+...+-+++|+.+|++..
T Consensus 1041 ~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1041 EYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred HHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhc
Confidence 777777542221 23445667788999999999874
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-06 Score=69.35 Aligned_cols=161 Identities=10% Similarity=-0.039 Sum_probs=137.4
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 178 (415)
|..+ ..+-..+.-.|+-+....+...... .|....+..++...+.|++.+|...|.+...++
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------------- 130 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------------- 130 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--------------
Confidence 4444 5566778888998888888877543 355567779999999999999999999998766
Q ss_pred cCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-
Q 039757 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK- 257 (415)
Q Consensus 179 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 257 (415)
++|..+++.+.-+|.+.|+.+.|..-|.+..+. .|.++...+.|.-.|.-.|+.+.|..++......++
T Consensus 131 --------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 131 --------PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred --------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 678889999999999999999999999999997 576899999999999999999999999999888755
Q ss_pred ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 258 NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 258 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
|...-..+.......|++++|..+-..-..
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 788888899999999999999988766544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.4e-06 Score=84.19 Aligned_cols=205 Identities=14% Similarity=0.063 Sum_probs=143.8
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHH
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF----DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 263 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 263 (415)
-+...|-..+......++.++|+.+.++++.. +.+. -.-+|.++++.-..-|.-+...++|+++.+.--.-..|.
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 34456667777777888888888888887765 1111 234566666666666777778888888776422234577
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc---C
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT---D 340 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~ 340 (415)
.|...|.+.+..++|.++|+.|.+. +.-....|.. .++.+.+..+-+.|..++++....-| .
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~--------------y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIM--------------YADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHH--------------HHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 8888888888888888888888765 2233334333 55667777777778777766554423 3
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcccc
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 408 (415)
.....-.+..-.+.|+.+.+..+|+..+...|.....|+.+++.-.+.|..+.++.+|++....++.+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 44555566666778888888888888888888888888888888888888888888888888777654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-05 Score=70.22 Aligned_cols=230 Identities=9% Similarity=-0.010 Sum_probs=159.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC-CCchHHHHHHHHHHcCCCCchhh
Q 039757 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYV 105 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~ 105 (415)
+++.+-..+...+..++|+.+.+.++ ...+. +..+|+.-...+...| ++++++..++.+.+.. +-+..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI---~lnP~------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqa 108 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVI---RLNPG------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQI 108 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH---HHCch------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHH
Confidence 56666667777889999999999999 55555 6667777766777777 5789999999998875 345667
Q ss_pred HHHHHHHHHcCCCh--hHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHh
Q 039757 106 NTALVNMYVSLGFL--KDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGILDGYTR 177 (415)
Q Consensus 106 ~~~li~~~~~~g~~--~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~ 177 (415)
|+..-..+.+.|+. ++++.+++.+.+ .|..+|+...-++.+.|+++++++.++++.+. +...|+.....+.+
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 77666666666653 677888877775 46778998888999999999999999999753 33444444333332
Q ss_pred ccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhh
Q 039757 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC----GCIFSALKLFEDIS 253 (415)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~ 253 (415)
.++... .....+........++.. .|.+...|+-+...+... ++..+|.+.+.+..
T Consensus 189 ~~~l~~------------------~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 189 SPLLGG------------------LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred cccccc------------------ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 211000 001123455566566665 577888898888888773 34566888888876
Q ss_pred hhCC-ChhhHHHHHHHHHccC------------------chHHHHHHHHHHH
Q 039757 254 VERK-NLVSWTSIISGFAMHG------------------MGKAAVENFERMQ 286 (415)
Q Consensus 254 ~~~~-~~~~~~~li~~~~~~~------------------~~~~A~~~~~~m~ 286 (415)
...| +......|++.|+... ..++|..++..+.
T Consensus 249 ~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 249 SKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 6433 5667888888887632 2356777777773
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-06 Score=79.17 Aligned_cols=221 Identities=11% Similarity=0.032 Sum_probs=173.6
Q ss_pred cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC
Q 039757 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101 (415)
Q Consensus 22 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 101 (415)
.|--..--.+...+.+.|-...|..+|++.. .|..++.+|+..|+..+|..+..+..++ +|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~ 455 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----------------MWDPVILCYLLLGQHGKAEEINRQELEK--DP 455 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CC
Confidence 3444455567788888999999999998875 4667888999999999999999888773 79
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCC
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~ 181 (415)
|...|..+.+......-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+-+
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n----------------- 515 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN----------------- 515 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-----------------
Confidence 9999999999888777899999998876433 22222223345799999999998765433
Q ss_pred CCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChh
Q 039757 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLV 260 (415)
Q Consensus 182 ~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 260 (415)
+....+|..+..+..+.++++.+...|..-+.. .|.+...||++-.+|.+.|+-.+|...+.+..+.. .+..
T Consensus 516 -----plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~ 588 (777)
T KOG1128|consen 516 -----PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ 588 (777)
T ss_pred -----ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe
Confidence 334556667777777888888888888888876 68788999999999999999999999999888763 3455
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
.|...+......|.+++|.+.+.+|...
T Consensus 589 iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 589 IWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred eeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 6777788888899999999999888653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.3e-06 Score=68.03 Aligned_cols=125 Identities=11% Similarity=0.116 Sum_probs=82.9
Q ss_pred hcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHH
Q 039757 238 KCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVD 316 (415)
Q Consensus 238 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~ 316 (415)
..++.+++...++...... .|...|..+...|...|++++|...|++..+. .|+..... ..+..
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~-------------~~lA~ 115 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELY-------------AALAT 115 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH-------------HHHHH
Confidence 3556667776676665553 46667777777888888888888888777764 45443322 12444
Q ss_pred H-hHhcCC--HHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCcc
Q 039757 317 M-LGRAGR--LEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377 (415)
Q Consensus 317 ~-~~~~g~--~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 377 (415)
+ +...|+ .++|.+++++.....| +...+..+...+...|++++|+..|+++.+..+++..-
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 3 355565 4777777777766644 55577777777777788888888888877777775433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-05 Score=68.69 Aligned_cols=229 Identities=11% Similarity=-0.039 Sum_probs=156.9
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcC-ChhHHHHHHh
Q 039757 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG-AVRNCQLIHG 214 (415)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~ 214 (415)
++..+-..+...++.++|+.+.+++.+.++..|+ +++.-...+...+ +++++...+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~yt----------------------aW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYT----------------------VWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----------------------HHHHHHHHHHHcchhHHHHHHHHH
Confidence 3444445566678889999999988754433222 2232233333445 5788999999
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC
Q 039757 215 YGEKRGFNAFDIRVSNCLIDTYAKCGC--IFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291 (415)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 291 (415)
.+.+. .|.+..+|+.-...+.+.|+ .+++.++++++.+.. .|..+|+...-++...|+++++++.++++++.+..
T Consensus 97 ~~i~~--npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 97 DVAED--NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHH--CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 99887 56677778776666666775 377889998888774 47788999999999999999999999999987554
Q ss_pred CChhhHHHHHHHHccCCcchHHHHHHhHhc---CC----HHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhc----CChHH
Q 039757 292 PNRVTFLSVLNACSHGGLHYGCLVDMLGRA---GR----LEQAEKIALGIPSEIT-DVVVRRILLGACSFH----GNVEM 359 (415)
Q Consensus 292 p~~~~~~~ll~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~----~~~~~ 359 (415)
....-+.. ...+.+. |. .++++..........| +...|+-+...+... ++..+
T Consensus 175 N~sAW~~R---------------~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 175 NNSAWNQR---------------YFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred chhHHHHH---------------HHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 43322221 1112222 22 2456666644444435 556888777777663 34567
Q ss_pred HHHHHHHHHHcccCCCccHHHHHHHHHhcC------------------chhhHHHHHHHHhh
Q 039757 360 GERVTRKVLEMERGNGGDYVLMYNILAGVG------------------RYVDAERLRRVMDE 403 (415)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~ 403 (415)
|.+.+.+....++.+..+...|++.|+... ..++|..+++.+.+
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 999999988888888889999999998642 34678888888843
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6e-05 Score=70.11 Aligned_cols=276 Identities=13% Similarity=0.024 Sum_probs=133.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 154 (415)
+.+....+.+.+|+.+++.+.... .-..-|..+.+.|+..|+++.|+++|-+.. .++-.|..|.+.|+|+.|.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 444455555666666666554432 223344555555666666666666554432 2444555566666666666
Q ss_pred HHHhhCCCC--ChhHHHHHHHHHHhccCCCCccC-CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHH
Q 039757 155 SLFEEMPCR--NVVSWTGILDGYTRMNRSNGAST-EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231 (415)
Q Consensus 155 ~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 231 (415)
++-++...| .+..|-+-..-+-+.|++.+|.. ......-...+..|-+.|..+...++...-.... -..+.-.
T Consensus 812 kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~----l~dt~~~ 887 (1636)
T KOG3616|consen 812 KLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDH----LHDTHKH 887 (1636)
T ss_pred HHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhh----hhHHHHH
Confidence 665555433 22334444444444555555440 0000001123444555555555555544333221 2233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc--
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL-- 309 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-- 309 (415)
+..-|...|++..|+.-|-+..+ |.+-+..|..++.+++|..+-+. .|- .+..--...+-+-+-.|+
T Consensus 888 f~~e~e~~g~lkaae~~flea~d-------~kaavnmyk~s~lw~dayriakt---egg-~n~~k~v~flwaksiggdaa 956 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAGD-------FKAAVNMYKASELWEDAYRIAKT---EGG-ANAEKHVAFLWAKSIGGDAA 956 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhhh-------HHHHHHHhhhhhhHHHHHHHHhc---ccc-ccHHHHHHHHHHHhhCcHHH
Confidence 55566666777777666655443 44455555555555555444322 111 111111111111111111
Q ss_pred --------chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 310 --------HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 310 --------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
....-|+.-+..+.++-|.++-+-..+. ........+..-+...|++++|-+.+-+.++.+.-
T Consensus 957 vkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 957 VKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred HHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 1122345556666677776665433322 12223334444566889999998888888776643
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00056 Score=61.69 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
-|+.+|+.||+-+... .++++.+.++++. ..- |. ....|..-|..-...++++.++.+|.+.+..- .+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~---~~F----P~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLV---NVF----PS--SPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHh---ccC----CC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 6888999999988877 9999999999997 332 32 66788999999999999999999999987653 45
Q ss_pred hhhHHHHHHHHHc-CCChhHH----HHHhcccCC------CchhhHHHHHHH---------HHhhCCHHHHHHHHhhCC
Q 039757 103 VYVNTALVNMYVS-LGFLKDS----SKLFDELPE------RNLVTWNVMITG---------LVKWGELEYARSLFEEMP 161 (415)
Q Consensus 103 ~~~~~~li~~~~~-~g~~~~a----~~~~~~~~~------~~~~~~~~li~~---------~~~~g~~~~a~~~~~~m~ 161 (415)
...|...|+---+ .|+...+ .+.|+-..+ .+...|+..+.. +....+++...++++++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 6667766653322 2333331 122222111 233445555443 334456666777777765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.8e-06 Score=66.03 Aligned_cols=161 Identities=13% Similarity=0.079 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
|.|..+ ..+-..+--.|+-+....+..+.... +.|....+..+....+.|++..|...+++.... -.+|...++-
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~-- 139 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNL-- 139 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhH--
Confidence 445555 45555666666666666666554333 234444555666667777777777777776553 1223333222
Q ss_pred HHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHH
Q 039757 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (415)
+.-+|.+.|++++|..-|.+..+..| ++...+.+.-.+.-.|+.+.|..++.......+.+...-..
T Consensus 140 ------------lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 140 ------------LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred ------------HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 44446677777777666655544422 44556666666666777777777777776666666666677
Q ss_pred HHHHHHhcCchhhHHHHHH
Q 039757 381 MYNILAGVGRYVDAERLRR 399 (415)
Q Consensus 381 l~~~~~~~g~~~~A~~~~~ 399 (415)
|..+....|++++|..+..
T Consensus 208 LAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 208 LALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHhhcCChHHHHhhcc
Confidence 7777777777777766543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.2e-05 Score=66.84 Aligned_cols=147 Identities=9% Similarity=-0.048 Sum_probs=113.9
Q ss_pred HHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchH
Q 039757 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGK 276 (415)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 276 (415)
-.....|..+.|+..+..+.+. .|.|+.......+.+.+.++.++|.+.++++....|+ ....-.+..+|.+.|+++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 3455678899999999999888 6878899999999999999999999999999998776 455777889999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCC
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN 356 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 356 (415)
+|..++++.... ..-|...|.. |..+|...|+..+|... ....+...|+
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~--------------LAqay~~~g~~~~a~~A----------------~AE~~~~~G~ 440 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDL--------------LAQAYAELGNRAEALLA----------------RAEGYALAGR 440 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHH--------------HHHHHHHhCchHHHHHH----------------HHHHHHhCCC
Confidence 999999998765 3445566665 55557777776666443 2345566777
Q ss_pred hHHHHHHHHHHHHcccCCCcc
Q 039757 357 VEMGERVTRKVLEMERGNGGD 377 (415)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~ 377 (415)
++.|...+....+....+...
T Consensus 441 ~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 441 LEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHHHHHHHHHHhccCCcHH
Confidence 788877777777766554433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-06 Score=68.83 Aligned_cols=203 Identities=13% Similarity=0.019 Sum_probs=155.7
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHH-HHHHHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS-IISGFA 270 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-li~~~~ 270 (415)
.+..++..+.+..+++.|++++..-.+. .|.+....+.|..+|-...++..|-+.|+++...-|...-|.. -.+++-
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 3556666777888999999998888877 4657888899999999999999999999999887665554443 356778
Q ss_pred ccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHH
Q 039757 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGA 350 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 350 (415)
+.+.+..|+.+...|... |+...-..-+.+ ......+++..+..+++..... .+..+.......
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqa------------AIkYse~Dl~g~rsLveQlp~e-n~Ad~~in~gCl 153 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQA------------AIKYSEGDLPGSRSLVEQLPSE-NEADGQINLGCL 153 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHH------------HHhcccccCcchHHHHHhccCC-Cccchhccchhe
Confidence 889999999999988763 333222221111 1134578888999999888854 355566666666
Q ss_pred HhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCCCC
Q 039757 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGR 412 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 412 (415)
..+.|+++.|.+-|+...+-+.-++-.-..+.-+..+.|+++.|.++..+++++|++..|..
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 77999999999999999987766555555666677889999999999999999999988753
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0013 Score=62.89 Aligned_cols=211 Identities=14% Similarity=0.130 Sum_probs=131.1
Q ss_pred hhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH--HHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039757 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT--CVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112 (415)
Q Consensus 35 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 112 (415)
....+++..|+.-..++. ... | +. .|..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+
T Consensus 19 ~ld~~qfkkal~~~~kll---kk~----P---n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~ 86 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLL---KKH----P---NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNV 86 (932)
T ss_pred HhhhHHHHHHHHHHHHHH---HHC----C---Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHH
Confidence 345788899999888887 333 3 22 23333333 46889999999988887665533 88889999999
Q ss_pred HHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHH----HHHHHhhCCCCChhHHHHHHHHHHhccC-CCCcc
Q 039757 113 YVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEY----ARSLFEEMPCRNVVSWTGILDGYTRMNR-SNGAS 185 (415)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~li~~~~~~~~-~~~a~ 185 (415)
|.+.|+.++|..+++...+ |+......+..+|.|.+++.+ |+++++...+.--.-|+ +++.+.+.-. .+...
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELL 165 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccc
Confidence 9999999999999999876 676666777788888777654 66677655432222222 2222222211 11111
Q ss_pred ----------------CCC----chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 186 ----------------TEP----SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 186 ----------------~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
..+ +..-...-+..+...+++++|..++..-......+.+...-+.-+..+...++|.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 111 111111222233456778888777744333333444555556667777777788777
Q ss_pred HHHHHHhhhhCCC
Q 039757 246 LKLFEDISVERKN 258 (415)
Q Consensus 246 ~~~~~~~~~~~~~ 258 (415)
.++-.++...++|
T Consensus 246 ~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 246 FELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHhCCc
Confidence 7777777665554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.3e-06 Score=64.32 Aligned_cols=109 Identities=9% Similarity=-0.135 Sum_probs=57.5
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-C
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-D 340 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~ 340 (415)
+..+...+...|++++|...|+..... .|+...+ +..+...+.+.|++++|...|+......| +
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a-------------~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRA-------------HIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHH-------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 334445555556666666665555543 3333221 11244445555566666555555544423 4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
...+..+..++...|++++|+..|+..++..|.++..+.....+.
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 445555666666666666666666666666666555554444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-05 Score=76.02 Aligned_cols=142 Identities=8% Similarity=-0.025 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
|.+...+..|.......|.+++|..+++.+.+..|+ ......++..+.+.+++++|+..+++.... .|+..+....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~- 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL- 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH-
Confidence 435666666777777777777777777777666554 344566666677777777777777776664 5665554433
Q ss_pred HHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHH
Q 039757 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 379 (415)
+...+.+.|++++|..+|++.....|+ ..++..+..++...|+.++|...|++..+...+....|.
T Consensus 160 ------------~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 ------------EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred ------------HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 333466677777777777666644343 456666666677777777777777777666555434433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-05 Score=64.65 Aligned_cols=106 Identities=8% Similarity=-0.006 Sum_probs=76.0
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHhhhhCC-ChhhHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY-AKCGC--IFSALKLFEDISVERK-NLVSWTS 264 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~~~~-~~~~~~~ 264 (415)
+...|..+...+...|+++.|...|+...+. .|.+..++..+..++ ...|+ .++|.+++++.....| +...+..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 4455556666666666666666666666665 466888888888764 66676 4888888888888755 5677888
Q ss_pred HHHHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 265 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
+...+.+.|++++|...|+++.+. ..|+...+
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 888888888888888888888775 34444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00013 Score=61.84 Aligned_cols=264 Identities=11% Similarity=0.063 Sum_probs=173.5
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHH---HHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMI---TGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRM 178 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 178 (415)
++.-.--+-..+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.-|++..+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---------------- 100 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---------------- 100 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh----------------
Confidence 3333444555666667777777777666665555554433 345555555555555555442
Q ss_pred cCCCCccCCCchHHHH-hHHHHHhhcCChhHHHHHHhhhhhcCCCCCC---HHH------------HHHHHHHHHhcCCH
Q 039757 179 NRSNGASTEPSEITIL-AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD---IRV------------SNCLIDTYAKCGCI 242 (415)
Q Consensus 179 ~~~~~a~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~------------~~~li~~~~~~g~~ 242 (415)
.+||...-. .-...+.+.|.++.|..-|+..++.. |.+ ... ....+..+...|+.
T Consensus 101 -------lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 101 -------LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred -------cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence 233322211 11223567788888888888888763 311 111 22334566778999
Q ss_pred HHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhc
Q 039757 243 FSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRA 321 (415)
Q Consensus 243 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~ 321 (415)
..|++....+.+..| |...|..-..+|...|++..|+.-++..-+..-..+...|. +-..+...
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk---------------is~L~Y~v 236 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK---------------ISQLLYTV 236 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH---------------HHHHHHhh
Confidence 999999999988754 77889999999999999999999888877653333333333 44557788
Q ss_pred CCHHHHHHHHhcCCCCCcCHHH----HHHH---------HHHHhhcCChHHHHHHHHHHHHcccC-C---CccHHHHHHH
Q 039757 322 GRLEQAEKIALGIPSEITDVVV----RRIL---------LGACSFHGNVEMGERVTRKVLEMERG-N---GGDYVLMYNI 384 (415)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~l~~~ 384 (415)
|+.+.++...++..+..||... |..| +....+.+++.++++.-+..++..|. . ...+..+..+
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 9999999888877766565432 2111 22345678888999999999888877 2 2455677778
Q ss_pred HHhcCchhhHHHHHHHHhhhc
Q 039757 385 LAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 385 ~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+...|++.+|++...+..+..
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcC
Confidence 888999999999888876543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00019 Score=73.49 Aligned_cols=319 Identities=11% Similarity=0.020 Sum_probs=196.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhcCC-CCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc----h
Q 039757 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSH-SPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH----V 103 (415)
Q Consensus 29 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~ 103 (415)
......+...|++++|...+....+...... ...+ .........+...+...|+++.|...++...+.-...+ .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDG-TLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccch-hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 3444555678999999999988763211111 0001 00111222233455678999999999998876311112 1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC-------Cc--hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE-------RN--LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~ 174 (415)
...+.+...+...|++++|...+++... +. ..++..+...+...|++++|...+++....-
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~---------- 561 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI---------- 561 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------
Confidence 2345566667789999999999887753 11 2345666777889999999999988764210
Q ss_pred HHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 175 YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF---NAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
...+. .. .......+..+...+...|+++.|...+.+...... .......+..+...+...|+++.|.+.+++
T Consensus 562 -~~~~~-~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 562 -EEQHL-EQ--LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred -HHhcc-cc--ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00000 00 011222334445556777999999988887765311 111244455567788899999999999988
Q ss_pred hhhhC---CChhhH-----HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCC
Q 039757 252 ISVER---KNLVSW-----TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGR 323 (415)
Q Consensus 252 ~~~~~---~~~~~~-----~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~ 323 (415)
..... .....+ ...+..+...|+.+.|..++........... ...... +..+...+...|+
T Consensus 638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~~~----------~~~~a~~~~~~g~ 706 (903)
T PRK04841 638 LENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN-HFLQGQ----------WRNIARAQILLGQ 706 (903)
T ss_pred HHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc-hhHHHH----------HHHHHHHHHHcCC
Confidence 75531 111111 1122445568899999999877654211111 110000 1125667888999
Q ss_pred HHHHHHHHhcCCCC-----Cc--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 324 LEQAEKIALGIPSE-----IT--DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 324 ~~~A~~~~~~~~~~-----~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.++|...+++.... .+ ...+...+..++...|+.++|...+.++.+...+
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999988776543 11 2235666777888999999999999999988765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-05 Score=76.19 Aligned_cols=144 Identities=13% Similarity=-0.006 Sum_probs=100.2
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
..+...+..+.....+.|.+++|..+++...+. .|.+......++..+.+.+++++|...+++.....| +....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 334666777777777888888888888888776 576777777778888888888888888888777655 34556777
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHH
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVV 343 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~ 343 (415)
..++.+.|++++|..+|+++... .|+ ...+. .+...+...|+.++|...|+...+. .|...-
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~--------------~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYV--------------GWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 77777788888888888887763 333 22322 2555677778888888888776555 444455
Q ss_pred HHHHH
Q 039757 344 RRILL 348 (415)
Q Consensus 344 ~~~l~ 348 (415)
|+.++
T Consensus 225 ~~~~~ 229 (694)
T PRK15179 225 LTRRL 229 (694)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-06 Score=65.82 Aligned_cols=93 Identities=9% Similarity=-0.143 Sum_probs=84.2
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...+...|++++|...|+......| +...|..+..++...|++++|+..|+++.+.+|.++..+..++.++...|+++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 45567899999999999998877644 67799999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc
Q 039757 393 DAERLRRVMDERNA 406 (415)
Q Consensus 393 ~A~~~~~~m~~~~~ 406 (415)
+|...++...+...
T Consensus 110 eAi~~~~~Al~~~p 123 (144)
T PRK15359 110 LAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999877654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.8e-05 Score=60.08 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh----hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 302 (415)
..|..++..+ ..++...+.+.++.+....|+. ...-.+...+...|++++|...|+...... |+... ..+..
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l-~~~a~ 88 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPEL-KPLAR 88 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHH-HHHHH
Confidence 3444455444 3667777777777776664433 223334456667777777777777777654 33321 11111
Q ss_pred HHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 303 ACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
- .|...+...|++++|+..++...........+......+.+.|+.++|...|+..
T Consensus 89 l---------~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 L---------RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred H---------HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 1 1555666777777777777665444334445556666677777777777766653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-05 Score=68.96 Aligned_cols=111 Identities=19% Similarity=0.093 Sum_probs=50.2
Q ss_pred HHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHH
Q 039757 236 YAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCL 314 (415)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l 314 (415)
+...|++++|+..++.+....| |+..+......+.+.|+..+|.+.++++... .|+...... .+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~-------------~~ 380 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQL-------------NL 380 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHH-------------HH
Confidence 3344455555555555444433 3333344444455555555555555555442 344322111 13
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHH
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGE 361 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 361 (415)
..+|.+.|+..+|++++++.....| |+..|..|.++|...|+..++.
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 3444555555555555544443322 3445555555555555544443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.6e-07 Score=50.33 Aligned_cols=35 Identities=29% Similarity=0.588 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.6e-05 Score=73.29 Aligned_cols=229 Identities=14% Similarity=0.044 Sum_probs=144.4
Q ss_pred CchhHHHHHH--HHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC------------C
Q 039757 67 DSFTYSFLIR--TCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE------------R 132 (415)
Q Consensus 67 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------~ 132 (415)
|..|-..++. .|...|+.+.|.+-.+.++ +..+|..+...|.+..++|-|.-.+..|.. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5556666655 4667788888887777664 355789999999999999999988888864 1
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc-------CCCchHHHHhHHHHHhhcCC
Q 039757 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-------TEPSEITILAVLPAIWQNGA 205 (415)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~-------~~~~~~~~~~ll~~~~~~~~ 205 (415)
+..+-.-........|.+++|..+|.+.+.-| .|=..|...|.+++|. ..--..||..-..-+...+|
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 11222233334467899999999999987644 3445666778888877 12223566666667777788
Q ss_pred hhHHHHHHhhhhhcCC--------CC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHH
Q 039757 206 VRNCQLIHGYGEKRGF--------NA----------FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 267 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~--------~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~ 267 (415)
.+.|...|++...... .| .+...|.-....+...|+.+.|+.+|..... |..+++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~fs~Vr 946 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------YFSMVR 946 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------hhhhee
Confidence 8888877765432110 01 1334444444445555666666666655544 555666
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG 333 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (415)
..|-.|+.++|-.+-++--. -...|. |.+.|...|++.+|..+|.+
T Consensus 947 I~C~qGk~~kAa~iA~esgd-----~AAcYh---------------laR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEESGD-----KAACYH---------------LARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred eEeeccCchHHHHHHHhccc-----HHHHHH---------------HHHHhhhhHHHHHHHHHHHH
Confidence 66666666666666554211 112222 66667777777777777753
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.6e-07 Score=49.40 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 292 (415)
.+|+.+|.+|++.|+++.|..+|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00018 Score=58.96 Aligned_cols=150 Identities=14% Similarity=0.089 Sum_probs=82.8
Q ss_pred HHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCc
Q 039757 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 189 (415)
...|+..|++++|++...... +......=+..+.+..+++-|.+.+++|.+-| +
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id------------------------e 168 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID------------------------E 168 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc------------------------h
Confidence 345666666666666666532 22333333344455566666666666665433 3
Q ss_pred hHHHHhHHHHHh----hcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHH
Q 039757 190 EITILAVLPAIW----QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTS 264 (415)
Q Consensus 190 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 264 (415)
+.|.+.+..++. ..+....|.-+|+++.++ .++++.+.+-...++...|++++|..+++...... .++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 334443433332 233466667777777665 34467777777777777777777777777766653 34455444
Q ss_pred HHHHHHccCch-HHHHHHHHHHHh
Q 039757 265 IISGFAMHGMG-KAAVENFERMQK 287 (415)
Q Consensus 265 li~~~~~~~~~-~~A~~~~~~m~~ 287 (415)
+|-+-...|.. +-..+.+.+++.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Confidence 44444444433 334455555554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00029 Score=66.05 Aligned_cols=307 Identities=13% Similarity=-0.016 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhH
Q 039757 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 121 (415)
Q Consensus 42 ~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 121 (415)
.++++.+++.. +.++. |+...-.+.--++..++++.|.+...+..+.+-..+...|..|.-.+.-.+++.+
T Consensus 461 ~kslqale~av---~~d~~------dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 461 KKSLQALEEAV---QFDPT------DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHHHHHH---hcCCC------CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 45677777776 33333 3333333344466778888888888888887667788888888888888888888
Q ss_pred HHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhccCCCCcc--CCCchH
Q 039757 122 SSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC-----RNVVSWTGILDGYTRMNRSNGAS--TEPSEI 191 (415)
Q Consensus 122 a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~--~~~~~~ 191 (415)
|+.+.+...+ + |...-..-++.-...++.++++.....+.. +.+..-..=+......+...-+. ..-...
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 8888776553 1 111111111122224444444444333320 00000000000000000000000 001111
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD-------IRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWT 263 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 263 (415)
++..+..-....+....-...+ .+....|.. ...|......+.+.++.++|.-.+.+.....| .+..|.
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~L---p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~ 688 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKL---PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY 688 (799)
T ss_pred hhHHHHHHHHhhhhhccccccc---CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH
Confidence 2222211111111111100001 111111111 23455667778888899999888887776533 566788
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH--HHhcCCCCCc-C
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK--IALGIPSEIT-D 340 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~p-~ 340 (415)
.....+...|+.++|.+.|..... +.|+.+-... ++...+.+.|+..-|.. ++.++....| +
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~-------------Ala~~lle~G~~~la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMT-------------ALAELLLELGSPRLAEKRSLLSDALRLDPLN 753 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHH-------------HHHHHHHHhCCcchHHHHHHHHHHHhhCCCC
Confidence 888888999999999999988776 4777766433 36666888887777777 8877776634 6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCC
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG 375 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 375 (415)
...|..+...+.+.|+.+.|.+.|+...+....+|
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 77999999999999999999999999998886633
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=71.94 Aligned_cols=121 Identities=11% Similarity=0.092 Sum_probs=84.4
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHH
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVV 342 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 342 (415)
.|+..+...++++.|..+|+++.+.. |+... . ++..+...++-.+|.+++.+.....| +..
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~--~--------------LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~ 235 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEVAV--L--------------LARVYLLMNEEVEAIRLLNEALKENPQDSE 235 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcHHH--H--------------HHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 34455555677777777777777653 54322 1 34445566677777777766655434 455
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
....-...|.+.++++.|+++.+++.+..|.+..+|..|+.+|...|++++|...++.+.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555566667788888888888888888888888888888888888888888888887765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.1e-05 Score=60.75 Aligned_cols=191 Identities=13% Similarity=-0.019 Sum_probs=134.2
Q ss_pred hhcCChhHHHHHHhhhhhc---C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-hhHHHHHHHHHccCch
Q 039757 201 WQNGAVRNCQLIHGYGEKR---G-FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTSIISGFAMHGMG 275 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~---~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~ 275 (415)
....+.++..+++..+... | ..+.-..+|..++-+....|+.+.|...++.+...-|.. ..-..-..-+-..|++
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 3456778888888777643 2 222234456666677788899999999999988774432 2211112224456889
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhc
Q 039757 276 KAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFH 354 (415)
Q Consensus 276 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~ 354 (415)
++|+++++.+...+ |+...... .-+...-..|+--+|++-+.+..+. ..|...|.-+...|...
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~K-------------RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRK-------------RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE 167 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHH-------------HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence 99999999988864 44433221 1333455577777888877777666 44888999999999999
Q ss_pred CChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC---chhhHHHHHHHHhhhcc
Q 039757 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG---RYVDAERLRRVMDERNA 406 (415)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 406 (415)
|++++|.-.++++.-..|.++..+..+...+.-.| ++.-|.+++.+..+.+.
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999888888888888775544 56678888887776554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00018 Score=69.35 Aligned_cols=169 Identities=11% Similarity=0.011 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh
Q 039757 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120 (415)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 120 (415)
...|+..|=+.. +..+. -...|..|...|+...+...|.+.|+.+.+.. .-+........+.|++..+++
T Consensus 474 ~~~al~ali~al---rld~~------~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 474 SALALHALIRAL---RLDVS------LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HHHHHHHHHHHH---hcccc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHH
Confidence 455555554444 33333 34467777777777777777888887776654 345666777778888888888
Q ss_pred HHHHHhcccCCCc-----hhhHHHHHHHHHhhCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhccCCCCcc-------
Q 039757 121 DSSKLFDELPERN-----LVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGILDGYTRMNRSNGAS------- 185 (415)
Q Consensus 121 ~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~------- 185 (415)
.|..+.-...+.+ ...|-...-.|.+.++...|+.-|+..... |...|..+..+|...|++..|.
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 8877743332211 122333444466677777777777766542 4455666777777777776665
Q ss_pred CCCchHHHHhHHH--HHhhcCChhHHHHHHhhhhhc
Q 039757 186 TEPSEITILAVLP--AIWQNGAVRNCQLIHGYGEKR 219 (415)
Q Consensus 186 ~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~ 219 (415)
..-...+|..... ..+..|.+.++...+......
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1111223332222 235677777777777766643
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00036 Score=68.46 Aligned_cols=226 Identities=10% Similarity=0.009 Sum_probs=148.2
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHh
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 146 (415)
+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++.+++..+ .+. .....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l-----------~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLI-----------DSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhh-----------hhccc
Confidence 67789999999999999999999999777653 22333444444467778887776655 222 22222
Q ss_pred hCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhh
Q 039757 147 WGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGY 215 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 215 (415)
..++.-+..+...|.. .+......+..+|-+.|+.+++. .+-+..+.+.+...++.. +.++|..++.+
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 3333222223333331 23336677888888888888887 556678889999999888 99999999888
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 216 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
.+.. |...+++..+.++|.++....|+ ...+-.+......+-...++..++
T Consensus 175 AV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~------------ 226 (906)
T PRK14720 175 AIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL------------ 226 (906)
T ss_pred HHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH------------
Confidence 7665 66777999999999999886543 223333333222221112222221
Q ss_pred hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHh
Q 039757 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACS 352 (415)
Q Consensus 295 ~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 352 (415)
-. +...|...++++++..+++.+.+..| |.....-++.+|.
T Consensus 227 ---~~--------------l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 227 ---ED--------------LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ---HH--------------HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11 44448888999999999998887733 5556666776665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=61.68 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=83.0
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...+...|++++|.+.++.+....| +...|..+...+...|++++|..+++.....+|.+...+..+...|...|+++
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Confidence 56668899999999999988866534 66788889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc
Q 039757 393 DAERLRRVMDERNA 406 (415)
Q Consensus 393 ~A~~~~~~m~~~~~ 406 (415)
+|...+++..+.+.
T Consensus 103 ~A~~~~~~al~~~p 116 (135)
T TIGR02552 103 SALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998887654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.1e-05 Score=57.45 Aligned_cols=129 Identities=12% Similarity=0.162 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch-
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV- 103 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~- 103 (415)
...|..++..+. .++...+...++.+. .....+ | ......-.+...+...|++++|...|+........|+.
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~---~~~~~s-~--ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLA---KDYPSS-P--YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHH---HHCCCC-h--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH
Confidence 456778888775 899999999999998 554330 0 01334455667888999999999999999987633332
Q ss_pred -hhHHHHHHHHHcCCChhHHHHHhcccCCC--chhhHHHHHHHHHhhCCHHHHHHHHhhC
Q 039757 104 -YVNTALVNMYVSLGFLKDSSKLFDELPER--NLVTWNVMITGLVKWGELEYARSLFEEM 160 (415)
Q Consensus 104 -~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (415)
.....|...+...|++++|+..++....+ ....+......+.+.|++++|...|+..
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 24445778899999999999999887653 3456777889999999999999999763
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=4e-05 Score=58.45 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
+......+...+...|++++|.+.|+.+....| +...+..+..++...|++++|...+++...
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445555555555555555444322 334444444455555555555555554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.7e-05 Score=66.38 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
..|+..+...++++.|..+|+++.+..|+ ....++..+...++-.+|.+++++..+. .|.... ++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~---LL-------- 237 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSE---LL-------- 237 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHH---HH--------
Confidence 33444444445555555555555553332 2233444444445555555555554432 222211 00
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHH
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
..-...+.+.++.+.|+++.+++....|+ ..+|..|..+|...|+++.|+-.++.
T Consensus 238 --~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 238 --NLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 01233344555555555555544444342 23555555555555555555544443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00059 Score=55.59 Aligned_cols=183 Identities=13% Similarity=0.064 Sum_probs=131.7
Q ss_pred CCCchHHHHHHHHHH---cC-CCCchhh-HHHHHHHHHcCCChhHHHHHhcccCC--Cch-hhHHHHHHHHHhhCCHHHH
Q 039757 82 SYPNLGTQLHAVISK---VG-FQSHVYV-NTALVNMYVSLGFLKDSSKLFDELPE--RNL-VTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~---~g-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a 153 (415)
.++++..++++.++. .| ..++..+ |..++-+....|+.+.|...++++.. |.. .+-..-...+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 356777777777643 34 5566554 55566667788999999999988764 321 1211112234457999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHH
Q 039757 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233 (415)
Q Consensus 154 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 233 (415)
+++++.+.+.| +.|..++..=+...-..|+.-.|++-+....+. .+.|...|.-+.
T Consensus 106 ~e~y~~lL~dd----------------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLa 161 (289)
T KOG3060|consen 106 IEYYESLLEDD----------------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELA 161 (289)
T ss_pred HHHHHHHhccC----------------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHH
Confidence 99999998765 345555655555666677777888888777776 566999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccC---chHHHHHHHHHHHhc
Q 039757 234 DTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHG---MGKAAVENFERMQKV 288 (415)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~ 288 (415)
..|...|++++|.-.++++.-..| +...+..+...+.-.| +.+.|.+.|.+..+.
T Consensus 162 eiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 162 EIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987756 5555666666544433 677899999998875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-05 Score=55.82 Aligned_cols=93 Identities=17% Similarity=0.066 Sum_probs=80.2
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
.+...+...|++++|...++......| +...+..+...+...|++++|.+.++......+.+...+..++..+...|++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 466678889999999999998766534 4467888888899999999999999999999888888999999999999999
Q ss_pred hhHHHHHHHHhhhc
Q 039757 392 VDAERLRRVMDERN 405 (415)
Q Consensus 392 ~~A~~~~~~m~~~~ 405 (415)
++|...+++..+.+
T Consensus 85 ~~a~~~~~~~~~~~ 98 (100)
T cd00189 85 EEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHccC
Confidence 99999998876543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-05 Score=59.55 Aligned_cols=92 Identities=5% Similarity=-0.130 Sum_probs=81.7
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...+...|++++|.++|+-...-.| +...|-.|.-++-..|++++|+..+..+...+|.++.++..+..++...|+.+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 45557889999999999987765534 66688889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhc
Q 039757 393 DAERLRRVMDERN 405 (415)
Q Consensus 393 ~A~~~~~~m~~~~ 405 (415)
.|.+.|+......
T Consensus 121 ~A~~aF~~Ai~~~ 133 (157)
T PRK15363 121 YAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.5e-06 Score=46.21 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC
Q 039757 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101 (415)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 101 (415)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-06 Score=59.35 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHhcCCCCCc---CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHH
Q 039757 321 AGRLEQAEKIALGIPSEIT---DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
.|+++.|+.+++++....| +...+..+..+|.+.|++++|..++++ .+.++.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5889999999998887744 345566689999999999999999999 666666666777789999999999999999
Q ss_pred HHH
Q 039757 398 RRV 400 (415)
Q Consensus 398 ~~~ 400 (415)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 976
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.7e-06 Score=46.91 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
.+|+++|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.8e-05 Score=71.66 Aligned_cols=185 Identities=12% Similarity=-0.101 Sum_probs=142.9
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHH
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
.+...+...|-...+. .+.-...|..|...|+..-+...|...|++..+..+ +...+......|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3455555555555544 565678899999999999999999999999988643 6677899999999999999999983
Q ss_pred HHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHH
Q 039757 283 ERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMG 360 (415)
Q Consensus 283 ~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 360 (415)
-..-+. .|- ...++.+ .+.-.|.+.++...|+.-|+......| |...|..++.+|.+.|.+..|
T Consensus 550 l~~~qk--a~a~~~k~nW~------------~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 550 LRAAQK--APAFACKENWV------------QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHHhhh--chHHHHHhhhh------------hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehH
Confidence 332221 111 1122221 133447889999999999987766634 778999999999999999999
Q ss_pred HHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 361 ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.++|.++....|.+...-.......+..|++.+|...+......
T Consensus 616 lKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 616 LKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999887777777777889999999999998887654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.4e-06 Score=44.74 Aligned_cols=31 Identities=35% Similarity=0.666 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHhcCC
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGL 290 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 290 (415)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0064 Score=55.18 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=62.7
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGL 144 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~ 144 (415)
|..+|+.||+-+... .++++.+.++++... ++-....|...|..-.+..+++.++++|.+... -+...|...+.--
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 889999999987666 899999999999764 455678899999999999999999999998764 4667777766543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.08 E-value=4e-05 Score=56.90 Aligned_cols=95 Identities=12% Similarity=-0.022 Sum_probs=80.5
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC---CccHHHHHHHH
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGN---GGDYVLMYNIL 385 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 385 (415)
.++..+.+.|++++|.+.|+.+....|+ ...+..+..++.+.|+++.|...++.+....|.+ ..++..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 4677788999999999999988765443 3466778899999999999999999999987764 45688899999
Q ss_pred HhcCchhhHHHHHHHHhhhccc
Q 039757 386 AGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
...|++++|...++++.+....
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcC
Confidence 9999999999999999887643
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0001 Score=54.71 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=62.5
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (415)
++..+...+.+.|++++|...|+++... .|+...... .+..+...+.+.|++++|.+.|+.+....|+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPN----------AHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHH----------HHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 3445556666667777777777666653 232210000 0111455566777777777777665544233
Q ss_pred ----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccH
Q 039757 341 ----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378 (415)
Q Consensus 341 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 378 (415)
..++..+..++...|+.++|...++++.+..|.+..+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 34566666777777888888888888877777655433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0039 Score=52.58 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=46.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccC---CCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERG---NGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+.+-|.+.|.+..|..-++.+++..|. ..++...++.+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 455688899999999999999998887 34677788899999999999998876553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0053 Score=57.36 Aligned_cols=324 Identities=12% Similarity=0.006 Sum_probs=192.1
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHH-------HHHHHhcCCCchHHHHHHHHH
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFL-------IRTCVTLSYPNLGTQLHAVIS 95 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~ 95 (415)
|.+..|..+...-...-.++.|...|-+... -.|++ -..-...+ ....+--|.+++|++++-+|-
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d--Y~Gik------~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d 761 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD--YAGIK------LVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD 761 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc--ccchh------HHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc
Confidence 8888999988887777778888877766542 22332 01111111 112233478888888887775
Q ss_pred HcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C---chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHH
Q 039757 96 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R---NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170 (415)
Q Consensus 96 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 170 (415)
.+. ..|..+.+.|++-.+.++++.-.. . -...|+.+...++....|++|.+.|..-... ..
T Consensus 762 rrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~ 827 (1189)
T KOG2041|consen 762 RRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----EN 827 (1189)
T ss_pred hhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----Hh
Confidence 443 256777888899888888876443 1 2457899999999999999999998876421 12
Q ss_pred HHHHHHhccCCCCcc-----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 171 ILDGYTRMNRSNGAS-----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 171 li~~~~~~~~~~~a~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
.+.++.+...+++-. .+-+....-.+..++.+.|.-++|.+.|-... .| ...+..|...++|.+|
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p------kaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP------KAAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc------HHHHHHHHHHHHHHHH
Confidence 345555555544433 33344455567777888888888877654322 22 2356678888889888
Q ss_pred HHHHHHhhhhCCChhhHH--------------HHHHHHHccCchHHHHHHHHHHHh----cCCCCChhhHHHHHHHHccC
Q 039757 246 LKLFEDISVERKNLVSWT--------------SIISGFAMHGMGKAAVENFERMQK----VGLKPNRVTFLSVLNACSHG 307 (415)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~--------------~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~~~~~ 307 (415)
.++-+.-.- |.+.+.- --|..+.++|+.-.|-+++.+|-+ ++..|-..--..++.+.
T Consensus 898 velaq~~~l--~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al--- 972 (1189)
T KOG2041|consen 898 VELAQRFQL--PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL--- 972 (1189)
T ss_pred HHHHHhccc--hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH---
Confidence 888776543 3333311 123445566666666777777744 33444433333344432
Q ss_pred CcchHHHHHHh----------HhcCCHHHHHHHHhcCCCC-----------CcCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 039757 308 GLHYGCLVDML----------GRAGRLEQAEKIALGIPSE-----------ITDVVVRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 308 ~~~~~~li~~~----------~~~g~~~~A~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
|+.-+ -..|..++|..++++.... .-....|..|.+--...|.+..|+..--.
T Consensus 973 ------LvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~ 1046 (1189)
T KOG2041|consen 973 ------LVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALI 1046 (1189)
T ss_pred ------HHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhh
Confidence 22222 2346677777766544322 11223344455556677888888776655
Q ss_pred HHHcc--cCCCccHHHHHHHHHhcC
Q 039757 367 VLEME--RGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 367 ~~~~~--~~~~~~~~~l~~~~~~~g 389 (415)
+.+-. .|+...|..+.-+-+...
T Consensus 1047 L~DYEd~lpP~eiySllALaaca~r 1071 (1189)
T KOG2041|consen 1047 LSDYEDFLPPAEIYSLLALAACAVR 1071 (1189)
T ss_pred hccHhhcCCHHHHHHHHHHHHhhhh
Confidence 54322 345667776665554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.5e-05 Score=50.83 Aligned_cols=66 Identities=15% Similarity=0.061 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC-chhhHHHHHHHHhhhc
Q 039757 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG-RYVDAERLRRVMDERN 405 (415)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~ 405 (415)
+..+|..+...+...|++++|+..|++.++.+|.++..|..++.+|...| ++++|.+.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46788899999999999999999999999999999999999999999999 8999999999887653
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0079 Score=52.73 Aligned_cols=111 Identities=16% Similarity=0.136 Sum_probs=84.2
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (415)
+.+..|.-+...|+...|.++-.+.. .||...|.. .+.+|+..++|++-.++... .+ +
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~l--------------ki~aLa~~~~w~eL~~fa~s--kK--s 236 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWL--------------KIKALAENKDWDELEKFAKS--KK--S 236 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHH--------------HHHHHHhcCCHHHHHHHHhC--CC--C
Confidence 45666777888898888888876653 477777766 45558899999998887654 23 5
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+..|..++.+|.+.|+..+|..+..+ -.+..-+..|.+.|.+.+|.+.--+..
T Consensus 237 PIGyepFv~~~~~~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 237 PIGYEPFVEACLKYGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCChHHHHHHHHHCCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 68899999999999999999988887 223667888889999988877654443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.4e-05 Score=50.18 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=46.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+...+...|++++|.+.|+.+++..|.+...+..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567778888888888888888887788888888888888888888888888876554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.3e-05 Score=51.82 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=62.7
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
.|+++.|..+++.+.+.....++...+..+..+|.+.|++++|..++++....+.+....-.+..+|.+.|++++|+.+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57899999999999998421114555666899999999999999999983232344455556789999999999999999
Q ss_pred HH
Q 039757 283 ER 284 (415)
Q Consensus 283 ~~ 284 (415)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 76
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0038 Score=54.19 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=81.8
Q ss_pred HHHhHHHHHhhc-CChhHHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---C----Ch
Q 039757 192 TILAVLPAIWQN-GAVRNCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---K----NL 259 (415)
Q Consensus 192 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~----~~ 259 (415)
.+..+...|... |+++.|...|++..+. +....-..++..+...+.+.|++++|.++|+++.... + ++
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344445566666 8899999888887753 2111124556778889999999999999999987651 1 11
Q ss_pred h-hHHHHHHHHHccCchHHHHHHHHHHHhcCCC-CChhhHHHHHHHHccCCcchHHHHHHhHh--cCCHHHHHHHHhcCC
Q 039757 260 V-SWTSIISGFAMHGMGKAAVENFERMQKVGLK-PNRVTFLSVLNACSHGGLHYGCLVDMLGR--AGRLEQAEKIALGIP 335 (415)
Q Consensus 260 ~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 335 (415)
. .|-..+-++...|++..|...|++....... .+..-+. ++.. |+.++-. ...+.+|+.-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~-~~~~----------l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK-FLED----------LLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH-HHHH----------HHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH-HHHH----------HHHHHHhCCHHHHHHHHHHHcccC
Confidence 1 2334455677789999999999998764211 1222222 2222 5555543 345777777787777
Q ss_pred CC
Q 039757 336 SE 337 (415)
Q Consensus 336 ~~ 337 (415)
..
T Consensus 265 ~l 266 (282)
T PF14938_consen 265 RL 266 (282)
T ss_dssp --
T ss_pred cc
Confidence 64
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00062 Score=61.09 Aligned_cols=104 Identities=8% Similarity=-0.009 Sum_probs=89.1
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCch
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMG 275 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 275 (415)
...+...|+++.|...|.++++. .|.+...|..+..+|.+.|++++|...++++....| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 45567789999999999999987 577899999999999999999999999999988765 567789999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 276 KAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 276 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
++|...|++..+. .|+.......+..|
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999874 67776666655544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.024 Score=50.45 Aligned_cols=365 Identities=11% Similarity=0.037 Sum_probs=201.4
Q ss_pred hhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCC
Q 039757 5 NNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84 (415)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 84 (415)
+....++-+.+..+. -|+.+|-.||.-|...|..++..+++++|.. |.+.-..+|..-|++-...+++
T Consensus 25 ~~D~lrLRerIkdNP---tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~---------pfp~~~~aw~ly~s~ELA~~df 92 (660)
T COG5107 25 HGDELRLRERIKDNP---TNILSYFQLIQYLETQESMDAEREMYEQLSS---------PFPIMEHAWRLYMSGELARKDF 92 (660)
T ss_pred CchHHHHHHHhhcCc---hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC---------CCccccHHHHHHhcchhhhhhH
Confidence 334446666665544 6788999999999999999999999999972 2222556788888888888899
Q ss_pred chHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC---------hhHHHHHhcccC--CC-chhhHHHHHHHH--------
Q 039757 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF---------LKDSSKLFDELP--ER-NLVTWNVMITGL-------- 144 (415)
Q Consensus 85 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~--~~-~~~~~~~li~~~-------- 144 (415)
..++.+|.+.....+ +...|...++.--+.+. +-+|.++.-... +| +...|+..+..+
T Consensus 93 ~svE~lf~rCL~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k 170 (660)
T COG5107 93 RSVESLFGRCLKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK 170 (660)
T ss_pred HHHHHHHHHHHhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc
Confidence 999999999877644 46667666654433331 222332222111 12 222343333221
Q ss_pred -HhhCCHHHHHHHHhhCCCC------------------------------ChhHH----------HHHHHHHHhcc----
Q 039757 145 -VKWGELEYARSLFEEMPCR------------------------------NVVSW----------TGILDGYTRMN---- 179 (415)
Q Consensus 145 -~~~g~~~~a~~~~~~m~~~------------------------------~~~~~----------~~li~~~~~~~---- 179 (415)
-.+.+++.....+.+|... ....| ..+.+++....
T Consensus 171 wEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~ 250 (660)
T COG5107 171 WEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINL 250 (660)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhh
Confidence 1222333444444444310 00001 11111111100
Q ss_pred -CCCCcc----------------------------------------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhh
Q 039757 180 -RSNGAS----------------------------------------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218 (415)
Q Consensus 180 -~~~~a~----------------------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (415)
...++. ....+..|..-..-+...++-+.|.........
T Consensus 251 Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~ 330 (660)
T COG5107 251 RTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE 330 (660)
T ss_pred hhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc
Confidence 000000 111111111111112334555555555443333
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------------C-----------------CChhhHHHHHH
Q 039757 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--------------R-----------------KNLVSWTSIIS 267 (415)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~-----------------~~~~~~~~li~ 267 (415)
. .| . .---+...|....+-+.....|++.... + .-...|-.++.
T Consensus 331 ~--sp-s--L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N 405 (660)
T COG5107 331 M--SP-S--LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLN 405 (660)
T ss_pred C--CC-c--hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHH
Confidence 2 22 2 1122334444444544444444443221 0 01123445566
Q ss_pred HHHccCchHHHHHHHHHHHhcC-CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHH-H
Q 039757 268 GFAMHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR-R 345 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~ 345 (415)
.-.+..-.+.|..+|-+..+.| +.++...++.++.. ...|+...|.++|+--....||...| .
T Consensus 406 ~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~---------------~~~~d~~ta~~ifelGl~~f~d~~~y~~ 470 (660)
T COG5107 406 YVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEY---------------YATGDRATAYNIFELGLLKFPDSTLYKE 470 (660)
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHH---------------HhcCCcchHHHHHHHHHHhCCCchHHHH
Confidence 6666667888999999999988 66777777765543 34577788888887655555666544 4
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcccCC--CccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMERGN--GGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
-.+.-+...++-+.|..+|+...+.-..+ ...|..++..-..-|+...|..+-+.|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 55666777888888888888665544332 46788888877788888777766666543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0011 Score=57.89 Aligned_cols=294 Identities=10% Similarity=-0.073 Sum_probs=168.0
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELE 151 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 151 (415)
...+.+..++..|+..+...++.+ +-+..-|..-+..+...|++++|.--.+.-.+ .....+.-.-.++...++..
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 334566677888889999888876 34456666677777777888877655443332 22223444445555555566
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc-CCCchHHHHhHHH-HHhhcCChhHHHHHHhhhhhcCCCCCCHHHH
Q 039757 152 YARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-TEPSEITILAVLP-AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVS 229 (415)
Q Consensus 152 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (415)
+|.+.|+.-. .| ...+++-.....-.+. .+|.-.++..+-. ++...++.+.|..+-....+.. +.+....
T Consensus 135 ~A~~~~~~~~-----~~-~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al 206 (486)
T KOG0550|consen 135 EAEEKLKSKQ-----AY-KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEAL 206 (486)
T ss_pred HHHHHhhhhh-----hh-HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHH
Confidence 6665555211 11 0111111111000000 2233344444333 3466788888888777777662 3233332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHH---HH----------HHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT---SI----------ISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~l----------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
-.=..++--.++.+.|...|++.....|+...-- .. ..-..+.|++..|.+.|.+.+. +.|+..-
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~ 284 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKK 284 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccc
Confidence 2222344456788899999988877656543211 11 2234567889999999988776 4555444
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHH---HHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVR---RILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
-+..+ |........+.|+.++|+.--++.... |.... ..-..++...+++++|.+-++...+....
T Consensus 285 ~nakl---------Y~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 285 TNAKL---------YGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhHHH---------HHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33322 333566678889999988887776665 44322 22233456678888888888888876655
Q ss_pred --CCccHHHHHHHHHhcCc
Q 039757 374 --NGGDYVLMYNILAGVGR 390 (415)
Q Consensus 374 --~~~~~~~l~~~~~~~g~ 390 (415)
...++.....++-++.+
T Consensus 354 ~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 354 CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred cchHHHHHHHHHHHHHhhh
Confidence 33444444444544333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00085 Score=51.14 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
.++..+-.+..++...|+.+.|.+.|+....
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=65.42 Aligned_cols=92 Identities=10% Similarity=-0.073 Sum_probs=81.0
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 393 (415)
...+...|++++|++.|++.....| +...|..+..+|...|++++|+..++++++..|.+...|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 3446778999999999998877645 566888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc
Q 039757 394 AERLRRVMDERNA 406 (415)
Q Consensus 394 A~~~~~~m~~~~~ 406 (415)
|...+++..+.+.
T Consensus 89 A~~~~~~al~l~P 101 (356)
T PLN03088 89 AKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHhCC
Confidence 9999998877653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00046 Score=48.34 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=78.9
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHc
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM 271 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 271 (415)
+..+...+...|++++|...++...+. .|.+...+..+..++...|++++|.+.|+......| +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 445666778899999999999999887 455667888899999999999999999999877644 44678888999999
Q ss_pred cCchHHHHHHHHHHHhc
Q 039757 272 HGMGKAAVENFERMQKV 288 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~ 288 (415)
.|++++|...+.+..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999887753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0052 Score=57.43 Aligned_cols=244 Identities=15% Similarity=0.101 Sum_probs=137.3
Q ss_pred CCchhhHHHHHHHHHcCCChhHHHHHhcccCC-Cchh------------hHHHHHHHHHhhCCHHHHHHHHhhCCCCChh
Q 039757 100 QSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLV------------TWNVMITGLVKWGELEYARSLFEEMPCRNVV 166 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~------------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 166 (415)
.|.+..|..|...-...-.++.|+..|-+... +.+. .-.+=+. +--|++++|.+++-+|..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhhh
Confidence 47888898888877777788888888877764 2221 1112222 2258999999999999877642
Q ss_pred H--------HHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh
Q 039757 167 S--------WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238 (415)
Q Consensus 167 ~--------~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (415)
. |-.+...+ +.|..+.- ...-+..++.+...++....++.|.+.|..-... ...+.++.+
T Consensus 767 ielr~klgDwfrV~qL~-r~g~~d~d-D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e~~~ecly~ 834 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLI-RNGGSDDD-DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------ENQIECLYR 834 (1189)
T ss_pred HHHHHhhhhHHHHHHHH-HccCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhHHHHHHH
Confidence 1 22222222 22211111 2333456666666666666666666666543322 224555555
Q ss_pred cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHh
Q 039757 239 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDML 318 (415)
Q Consensus 239 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~ 318 (415)
..++++-+.+-+.+.+ +....-.+..++...|.-++|.+.+-+-- .|.. -++.+
T Consensus 835 le~f~~LE~la~~Lpe---~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pka-------------------Av~tC 888 (1189)
T KOG2041|consen 835 LELFGELEVLARTLPE---DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPKA-------------------AVHTC 888 (1189)
T ss_pred HHhhhhHHHHHHhcCc---ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcHH-------------------HHHHH
Confidence 5555555555444432 44556667777888888887777664321 1221 33446
Q ss_pred HhcCCHHHHHHHHhcCCCCCcCHHHHHH--------------HHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHH
Q 039757 319 GRAGRLEQAEKIALGIPSEITDVVVRRI--------------LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 384 (415)
...++|.+|.++-++..-. .+.+.-+ -|..+.++|.+-+|.+++.+|.+........|..+-..
T Consensus 889 v~LnQW~~avelaq~~~l~--qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRFQLP--QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHHHHHHHHHHHHhccch--hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 7777888888887765532 3322211 12234455566666666666666655544444444444
Q ss_pred H
Q 039757 385 L 385 (415)
Q Consensus 385 ~ 385 (415)
|
T Consensus 967 Y 967 (1189)
T KOG2041|consen 967 Y 967 (1189)
T ss_pred H
Confidence 3
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0084 Score=52.56 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=41.0
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHcc
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 272 (415)
.+..+.-+...|....|.++-++.. .| +..-|-..+.+++..++|++-.++... +.++.-|..++.+|...
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~-dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VP-DKRFWWLKIKALAENKDWDELEKFAKS----KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----Cc-HHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCCCChHHHHHHHHHC
Confidence 3333444444555555554443332 12 555555555555555555555544322 13345555555555555
Q ss_pred CchHHHHHHHHH
Q 039757 273 GMGKAAVENFER 284 (415)
Q Consensus 273 ~~~~~A~~~~~~ 284 (415)
|+..+|..+..+
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 555555555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0011 Score=57.38 Aligned_cols=130 Identities=16% Similarity=0.133 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH-HHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG-FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 305 (415)
+|..+++..-+.+..+.|..+|.+..+.++ +...|-..... |...++.+.|.++|+...+. +..+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~------- 74 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWL------- 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHH-------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHH-------
Confidence 344555555555555555555555554321 22233333333 22234444456666555543 111222211
Q ss_pred cCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH----HHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 306 HGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDV----VVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
..++.+...|+.+.|..+|++.....|.. ..|...+..-.+.|+.+.+.++.+++.+..+
T Consensus 75 -------~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 75 -------EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp -------HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 13444555556666666665555442222 2555566555566666666666666555443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.5e-05 Score=50.13 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=43.7
Q ss_pred hhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
...|++++|++.|+++....|.+...+..++.+|.+.|++++|.++++++......
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46678888888888888888888888888888888888888888888777665543
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.9e-05 Score=41.26 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcC
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHS 58 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 58 (415)
.+||.+|++|++.|++++|.++|++|. +.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~---~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMR---ERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHh---HCc
Confidence 479999999999999999999999998 655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=46.95 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=41.7
Q ss_pred hcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHH
Q 039757 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 265 (415)
..|++++|..+|+.+... .|.+..++..++.+|.+.|++++|.++++++....|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 466777777777777766 46577777777777777777777777777777766664444333
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0054 Score=47.72 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=96.4
Q ss_pred CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCC
Q 039757 256 RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIP 335 (415)
Q Consensus 256 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (415)
.|++..--.|..+..+.|+..+|...|++...--+.-|...... +..+....+++..|...++.+-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLg--------------lA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLG--------------LAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHH--------------HHHHHHhhccHHHHHHHHHHHh
Confidence 36777777788888888888888888888765444445544433 4555777888888888877665
Q ss_pred CCCc---CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCC
Q 039757 336 SEIT---DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 336 ~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
+..| ++.+.-.+.+.+...|.+.+|+..|+...+..|. +..-......+.++|+.++|..-+.++.+.-.+..|
T Consensus 152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcch
Confidence 5422 3345556777888888888888888888887655 334445566778888888877666666554443333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00046 Score=48.77 Aligned_cols=79 Identities=6% Similarity=-0.042 Sum_probs=66.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhcCC-CCCCCCCCchhHHHHHHHHHhcCC--------CchHHHHHHHHHHcCC
Q 039757 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSH-SPLRPLFDSFTYSFLIRTCVTLSY--------PNLGTQLHAVISKVGF 99 (415)
Q Consensus 29 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~g~ 99 (415)
-.-|..+...+++.....+|+.++ +.|+ . | +..+|+.++.+.++..- .-..+.+|+.|+..++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslk---RN~i~l--P---sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~l 100 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLK---RNGITL--P---SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKL 100 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH---hcCCCC--C---cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 345666777799999999999999 9999 6 7 99999999999887652 2356789999999999
Q ss_pred CCchhhHHHHHHHHHc
Q 039757 100 QSHVYVNTALVNMYVS 115 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~ 115 (415)
+|+..+|+.++..+.+
T Consensus 101 KP~~etYnivl~~Llk 116 (120)
T PF08579_consen 101 KPNDETYNIVLGSLLK 116 (120)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999987754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.03 Score=48.96 Aligned_cols=307 Identities=12% Similarity=0.025 Sum_probs=172.5
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHHhhc--CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH--HH
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSL--ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT--CV 79 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~ 79 (415)
+|..+.+.|..-.+..+ |..|-.++.- .||-..|.+.-.+... -+. . |......|+.+ ..
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~----lls--s---DqepLIhlLeAQaal 131 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASK----LLS--S---DQEPLIHLLEAQAAL 131 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHh----hhh--c---cchHHHHHHHHHHHH
Confidence 34455555555444333 6666666654 4666666665554431 111 2 44444444443 34
Q ss_pred hcCCCchHHHHHHHHHHcCCCCchhhH--HHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHH
Q 039757 80 TLSYPNLGTQLHAVISKVGFQSHVYVN--TALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~ 154 (415)
-.|+++.|.+-|+.|... |..... ..|.-.--+.|+.+.|.++-+..-+ |. ...+...+...+..|+|+.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 567888888888888652 332221 1122222356777777776666543 32 345677778888888888888
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH
Q 039757 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234 (415)
Q Consensus 155 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 234 (415)
++++.-+...+. .++. -...-..|+.
T Consensus 209 kLvd~~~~~~vi--------------------e~~~----------------------------------aeR~rAvLLt 234 (531)
T COG3898 209 KLVDAQRAAKVI--------------------EKDV----------------------------------AERSRAVLLT 234 (531)
T ss_pred HHHHHHHHHHhh--------------------chhh----------------------------------HHHHHHHHHH
Confidence 888765531110 0000 0000011111
Q ss_pred HHH---hcCCHHHHHHHHHHhhhhCCChhh-HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcc
Q 039757 235 TYA---KCGCIFSALKLFEDISVERKNLVS-WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLH 310 (415)
Q Consensus 235 ~~~---~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 310 (415)
+-. -..+...|.+.-.+..+..||... --.-..++.+.|+..++-.+++.+-+....|+......
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~----------- 303 (531)
T COG3898 235 AKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV----------- 303 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH-----------
Confidence 100 012344455555444444466543 33345678888888888888888888755555443221
Q ss_pred hHHHHHHhHhcCCHHHH----HHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQA----EKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A----~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
+.+.|+.-.. .+-++.|+.+ +.++...+..+-...|++..|..--+......|. ...|..|.+.-.
T Consensus 304 -------~ar~gdta~dRlkRa~~L~slk~n--naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIee 373 (531)
T COG3898 304 -------RARSGDTALDRLKRAKKLESLKPN--NAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEE 373 (531)
T ss_pred -------HhcCCCcHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHh
Confidence 4455543222 1234556655 6777777888888888888887777766665543 456767777665
Q ss_pred h-cCchhhHHHHHHHHhhh
Q 039757 387 G-VGRYVDAERLRRVMDER 404 (415)
Q Consensus 387 ~-~g~~~~A~~~~~~m~~~ 404 (415)
. .|+-.++.+.+.+..+.
T Consensus 374 AetGDqg~vR~wlAqav~A 392 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hccCchHHHHHHHHHHhcC
Confidence 4 48888888888776544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0005 Score=59.41 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH-HHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT-CVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
+.+|-.+++..-+.+..+.|..+|.+.. ..+.. +...|...... +...++.+.|..+|+...+. ++.+.
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~---~~~~~------~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~ 70 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRAR---KDKRC------TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCS-------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-H
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHH---cCCCC------CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCH
Confidence 3578899999999999999999999998 44433 34445444444 33356777799999999876 56788
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C----chhhHHHHHHHHHhhCCHHHHHHHHhhCCC
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R----NLVTWNVMITGLVKWGELEYARSLFEEMPC 162 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (415)
..|...++.+...|+.+.|..+|++... + ....|...+..=.+.|+++.+.++.+++.+
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999875 2 335899999999999999999999988863
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0003 Score=59.75 Aligned_cols=97 Identities=10% Similarity=0.026 Sum_probs=79.7
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH----HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC---CccHHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITDV----VVRRILLGACSFHGNVEMGERVTRKVLEMERGN---GGDYVLMYN 383 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 383 (415)
|...+..+.+.|++++|...|+.+....|+. ..+-.+...|...|++++|...|+.+....|.+ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3334444566799999999999988876754 477788899999999999999999999988874 456667788
Q ss_pred HHHhcCchhhHHHHHHHHhhhccc
Q 039757 384 ILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
++...|++++|..+++++.+....
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcC
Confidence 899999999999999998876543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00064 Score=61.27 Aligned_cols=121 Identities=12% Similarity=0.027 Sum_probs=97.2
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--CChhhHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FDIRVSNCLIDTYAKCGCIFSALKLFEDISVER--KNLVSWT 263 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 263 (415)
+.+...+..++..+....+++.+..++.......... .-+.+..++++.|.+.|..+.+.++++.=...+ ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3455566777788888888888888887777652111 235566799999999999999999998876665 8999999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccC
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHG 307 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 307 (415)
.||+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888888888888877777654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.04 Score=49.22 Aligned_cols=381 Identities=13% Similarity=0.063 Sum_probs=197.6
Q ss_pred CCchhhHHHHHHhHhhccCCcch----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHH----TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~ 77 (415)
+++...+..+|+.+-+.---.|. ...-+.++++|.. .+.+.....+....+ ..|-. .|..+..+
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~--~~~~s---------~~l~LF~~ 86 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQ--QFGKS---------AYLPLFKA 86 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHH--hcCCc---------hHHHHHHH
Confidence 35667788888887654432232 2235566777764 445555555555553 33322 33344333
Q ss_pred --HHhcCCCchHHHHHHHHHHc--CCC------------CchhhHHHHHHHHHcCCChhHHHHHhcccCC--------Cc
Q 039757 78 --CVTLSYPNLGTQLHAVISKV--GFQ------------SHVYVNTALVNMYVSLGFLKDSSKLFDELPE--------RN 133 (415)
Q Consensus 78 --~~~~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~ 133 (415)
+-+.+++.+|.+.+..-... +-. +|...=+..++++...|++.++..+++++.+ -+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~ 166 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWN 166 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhccc
Confidence 34667888888888776554 222 2222334566778889999999988888764 36
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCc----cCCCchHHHHhHHHHHhhc--CChh
Q 039757 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGA----STEPSEITILAVLPAIWQN--GAVR 207 (415)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~~~~~~ll~~~~~~--~~~~ 207 (415)
..+|+-++-.+.++=-++ +-+.+...=-..|--+|-.|.+.=+.-++ ...|.+..+..++....-. .+..
T Consensus 167 ~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~ 242 (549)
T PF07079_consen 167 SDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLP 242 (549)
T ss_pred HHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhcc
Confidence 778887666665442111 11111111112233444444432222222 1455555555555544332 2223
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh------CCChhhHHHHHHHHHccCchHHHHHH
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLVSWTSIISGFAMHGMGKAAVEN 281 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~ 281 (415)
--.+++......-..|...-+...|+.-+.. +.+++..+-+.+... ..-+.+|..++....+.++..+|.+.
T Consensus 243 ~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~ 320 (549)
T PF07079_consen 243 PLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQY 320 (549)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344444444444445444444455554444 344444333332221 12334567777777777777777777
Q ss_pred HHHHHhcCCCCChhhHHHHH-------HHHccCCc---------------------------chHHHHHHhHhcCC-HHH
Q 039757 282 FERMQKVGLKPNRVTFLSVL-------NACSHGGL---------------------------HYGCLVDMLGRAGR-LEQ 326 (415)
Q Consensus 282 ~~~m~~~g~~p~~~~~~~ll-------~~~~~~~~---------------------------~~~~li~~~~~~g~-~~~ 326 (415)
+.-+... .|+...-..++ ...+.... ..-.-..-+.+.|. -++
T Consensus 321 l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 321 LALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHH
Confidence 7666542 34333211111 11111110 00011122333343 344
Q ss_pred HHHHHhcCCCC-----------------------------------------------CcCHHHHHHHHHH--HhhcCCh
Q 039757 327 AEKIALGIPSE-----------------------------------------------ITDVVVRRILLGA--CSFHGNV 357 (415)
Q Consensus 327 A~~~~~~~~~~-----------------------------------------------~p~~~~~~~l~~~--~~~~~~~ 357 (415)
|+++++.+..- ..+...-+.|..+ +..+|++
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 44443332211 0122222333333 4567788
Q ss_pred HHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
.++.-.-.-+.+..| ++.+|..++-++....++++|.+++..+..
T Consensus 479 ~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 479 HKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 887766666666665 788999999999999999999999987643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0014 Score=52.28 Aligned_cols=131 Identities=7% Similarity=-0.051 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhh
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYV 105 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 105 (415)
..|..+...+...|++++|...|++.. ..... ++ .....+..+...+.+.|+++.|...+++..+.. +-+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 108 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEAL---KLEED--PN-DRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSA 108 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HHhhc--cc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHH
Confidence 356667777777888888888888877 33322 20 013567777777888888888888888877653 234555
Q ss_pred HHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC
Q 039757 106 NTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 180 (415)
+..+..++...|+...+..-++.. ...+++|.+++++....++..|..++.-+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 555666666666644433221111 0124566666666665555556555555555544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0088 Score=57.54 Aligned_cols=230 Identities=14% Similarity=0.045 Sum_probs=136.7
Q ss_pred HhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHH--HhhcCChhHHHHHHhhhhhcC
Q 039757 145 VKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPA--IWQNGAVRNCQLIHGYGEKRG 220 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~ 220 (415)
...+++.+|.+...++.+ |+. .+..++.+ +.+.|+.++|..+++.....+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~--------------------------~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~ 73 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA--------------------------LYAKVLKALSLFRLGKGDEALKLLEALYGLK 73 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc--------------------------HHHHHHHHHHHHHhcCchhHHHHHhhhccCC
Confidence 356778888887777653 331 22333333 367888888888888777664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
+.|..+...+-.+|...|+.++|..+|+......|+......+..+|.+.+.+.+-.++=-+|-+. +.-+...|.++
T Consensus 74 --~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV 150 (932)
T KOG2053|consen 74 --GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSV 150 (932)
T ss_pred --CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHH
Confidence 448899999999999999999999999999988788777777778888887766544443333332 23344555555
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCC-c--CHHHHHHHHHHHhhcCChHHHHHHHH-HHHHcccC-CC
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI-T--DVVVRRILLGACSFHGNVEMGERVTR-KVLEMERG-NG 375 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~-~~ 375 (415)
++-..+.-...+.+.. .--..-|.+.++.+.+.. + +..-.......+...|++++|.+++. ...+..++ +.
T Consensus 151 ~Slilqs~~~~~~~~~----~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~ 226 (932)
T KOG2053|consen 151 ISLILQSIFSENELLD----PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANL 226 (932)
T ss_pred HHHHHHhccCCccccc----chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccch
Confidence 5443222111111100 011223455555555541 1 11111122233456777888888883 33333333 44
Q ss_pred ccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 376 GDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 376 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
..-+.-+..+...++|.+..++..++...|..
T Consensus 227 ~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 227 YLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 44445566667777777777776666666544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00042 Score=55.28 Aligned_cols=93 Identities=10% Similarity=-0.078 Sum_probs=75.2
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhc
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV 388 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (415)
.+...+...|++++|...|++.....|+ ...+..+...+.+.|++++|...++++.+..+.+...+..++.++...
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 4667788999999999999987654222 357888899999999999999999999999988888888899999887
Q ss_pred Cc--------------hhhHHHHHHHHhhhc
Q 039757 389 GR--------------YVDAERLRRVMDERN 405 (415)
Q Consensus 389 g~--------------~~~A~~~~~~m~~~~ 405 (415)
|+ +++|.+++++....+
T Consensus 120 g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 120 GEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred CChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 76 456666666655443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=46.95 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=44.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhC---CChhhHHHHHHHHHcc--------CchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 233 IDTYAKCGCIFSALKLFEDISVER---KNLVSWTSIISGFAMH--------GMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
|..+...+++.....+|+.++..+ |++.+|+.++.+.++. ++.-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 333333344444444444444432 4444555555544432 23456788999999999999999999988
Q ss_pred HHH
Q 039757 302 NAC 304 (415)
Q Consensus 302 ~~~ 304 (415)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 874
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00056 Score=61.63 Aligned_cols=117 Identities=11% Similarity=0.131 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC----CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER----KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
|.+......+++.+....+++.+..++.+....+ .-..|..++++.|...|..++++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4466777788888888889999999999988762 223566799999999999999999999999999999999998
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhh
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSF 353 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~ 353 (415)
. |++.+.+.|++..|.++...|... ..+..|+..-+.+|.+
T Consensus 143 ~--------------Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 L--------------LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred H--------------HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 8 667799999999999998766544 3344454444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00027 Score=47.11 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=50.1
Q ss_pred HHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 349 GACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
..|.+.+++++|.++++.++..+|.++..+...+.++...|++++|.+.++...+.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 46778888999999999999988888888888899999999999999988888866553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0011 Score=52.66 Aligned_cols=84 Identities=4% Similarity=-0.196 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
-...|..+...+...|++++|+..|++.. ..... |. ....++..+...+...|++++|...++...+.. +...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al---~l~~~--~~-~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~ 106 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEID--PY-DRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLP 106 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcccc--ch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcH
Confidence 34556667777777788888888877776 33222 10 023466777777777777777777777776542 2233
Q ss_pred hhHHHHHHHHH
Q 039757 104 YVNTALVNMYV 114 (415)
Q Consensus 104 ~~~~~li~~~~ 114 (415)
.++..+...+.
T Consensus 107 ~~~~~la~i~~ 117 (168)
T CHL00033 107 QALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHH
Confidence 44555555555
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0053 Score=50.34 Aligned_cols=49 Identities=10% Similarity=-0.025 Sum_probs=38.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCC---CccHHHHHHHHHhcCchhhHH
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGN---GGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 395 (415)
+...|.+.|.+..|..-++.+++..|.. ..+...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4667889999999999999999998874 356778888999999888554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.003 Score=59.33 Aligned_cols=148 Identities=9% Similarity=-0.017 Sum_probs=99.4
Q ss_pred CchhhHHHHHHHHHhh-----CCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhc
Q 039757 132 RNLVTWNVMITGLVKW-----GELEYARSLFEEMPC--RNV-VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN 203 (415)
Q Consensus 132 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~ 203 (415)
.|...|...+.+.... ++.++|..+|++..+ |+- ..|..+..++.....+.. ...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~-----------------~~~ 397 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP-----------------LDE 397 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC-----------------ccH
Confidence 3567788777775432 236788888888875 331 223332222211111100 001
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHH
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFE 283 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 283 (415)
.+...+.+...........+.++.+|.++.-.+...|++++|...+++.....|+...|..+...+...|+.++|...++
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12334444444444433345577888888878888899999999999999988888899999999999999999999999
Q ss_pred HHHhcCCCCChhhHH
Q 039757 284 RMQKVGLKPNRVTFL 298 (415)
Q Consensus 284 ~m~~~g~~p~~~~~~ 298 (415)
+.... .|...||.
T Consensus 478 ~A~~L--~P~~pt~~ 490 (517)
T PRK10153 478 TAFNL--RPGENTLY 490 (517)
T ss_pred HHHhc--CCCCchHH
Confidence 98774 67777765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.015 Score=54.01 Aligned_cols=274 Identities=13% Similarity=0.097 Sum_probs=142.6
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHH---------HHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchH--HH
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLY---------KQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLG--TQ 89 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~---------~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a--~~ 89 (415)
+.|....+.+-+..|...|.+++|.++- +.+- ... . +.-.++..-.+|.+.++..-- ..
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA---~~A----L---eAL~f~~ARkAY~rVRdl~~L~li~ 621 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELA---MEA----L---EALDFETARKAYIRVRDLRYLELIS 621 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHH---HHH----H---hhhhhHHHHHHHHHHhccHHHHHHH
Confidence 3455566677777888888888876541 1111 000 1 334556666677777765432 33
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHH
Q 039757 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWT 169 (415)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 169 (415)
-++++++.|-.|+... +...++-.|.+.+|-++|.+--..+ -.+..|.....++.|.+++..-. ..+--
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en-----RAlEmyTDlRMFD~aQE~~~~g~---~~eKK 690 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN-----RALEMYTDLRMFDYAQEFLGSGD---PKEKK 690 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh-----hHHHHHHHHHHHHHHHHHhhcCC---hHHHH
Confidence 3456677777677543 4466777899999988887764322 12333444444555554443321 11111
Q ss_pred HHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039757 170 GILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLF 249 (415)
Q Consensus 170 ~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 249 (415)
.|++--... ..-...|. ...+.+...|+.++ .+..+...|-.+.+.++-
T Consensus 691 mL~RKRA~W---Ar~~kePk-----aAAEmLiSaGe~~K-----------------------Ai~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 691 MLIRKRADW---ARNIKEPK-----AAAEMLISAGEHVK-----------------------AIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred HHHHHHHHH---hhhcCCcH-----HHHHHhhcccchhh-----------------------hhhhhhcccHHHHHHHHH
Confidence 111100000 00000000 00111111122111 122333444444445544
Q ss_pred HHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH
Q 039757 250 EDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK 329 (415)
Q Consensus 250 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (415)
+++.. .+..+...+...+.+...+.-|-++|..|-. ... +++.....++|++|..
T Consensus 740 rkld~--~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------~ks-----------------iVqlHve~~~W~eAFa 794 (1081)
T KOG1538|consen 740 RKLDK--AEREPLLLCATYLKKLDSPGLAAEIFLKMGD------LKS-----------------LVQLHVETQRWDEAFA 794 (1081)
T ss_pred hhcch--hhhhHHHHHHHHHhhccccchHHHHHHHhcc------HHH-----------------HhhheeecccchHhHh
Confidence 44443 3445555555556666777788888887743 222 6677888899999999
Q ss_pred HHhcCCCCCcCHHH-H----------HHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 330 IALGIPSEITDVVV-R----------RILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 330 ~~~~~~~~~p~~~~-~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
+-++.++-.|++.. | ..--.+|.++|+..+|..+++++....
T Consensus 795 lAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 795 LAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 88887766444431 1 122335666666667777666665544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0043 Score=58.35 Aligned_cols=140 Identities=9% Similarity=-0.003 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccC--------chHHHHHHHHHHHh
Q 039757 222 NAFDIRVSNCLIDTYAKCG-----CIFSALKLFEDISVERKN-LVSWTSIISGFAMHG--------MGKAAVENFERMQK 287 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~--------~~~~A~~~~~~m~~ 287 (415)
.|.+...|...+++..... +.+.|.++|++..+..|+ ...|..+..++.... +...+....++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4558888888888754432 377899999999888775 345555544443321 12333333433333
Q ss_pred cC-CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 039757 288 VG-LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 288 ~g-~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
.. ...+...|.. +.......|++++|...+++.....|+...|..+...+...|+.++|.+.+++
T Consensus 413 l~~~~~~~~~~~a--------------la~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 413 LPELNVLPRIYEI--------------LAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred cccCcCChHHHHH--------------HHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 1122233322 33334456889999888888877767877888888888888999999999998
Q ss_pred HHHcccCCC
Q 039757 367 VLEMERGNG 375 (415)
Q Consensus 367 ~~~~~~~~~ 375 (415)
+...+|.++
T Consensus 479 A~~L~P~~p 487 (517)
T PRK10153 479 AFNLRPGEN 487 (517)
T ss_pred HHhcCCCCc
Confidence 888888755
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00062 Score=44.12 Aligned_cols=54 Identities=15% Similarity=0.040 Sum_probs=25.7
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
+...|++++|...|+.+++. .|.+...+..+..++...|++++|...|+++...
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555555544 2434444444555555555555555555544443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0023 Score=51.24 Aligned_cols=85 Identities=21% Similarity=0.278 Sum_probs=62.6
Q ss_pred hcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc--cCchHHHH
Q 039757 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM--HGMGKAAV 279 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~ 279 (415)
+.|.++-....++.|.+-|+.. |..+|+.|++.+=+ |.+ +=..++++-.. -.+-+-|+
T Consensus 64 RRGHVeFI~aAL~~M~efgv~k-DL~~Y~~LLDvFPK-g~f------------------vp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEK-DLEVYKALLDVFPK-GKF------------------VPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcc-cHHHHHHHHHhCCC-CCc------------------ccccHHHHHhccCcHHHHHHH
Confidence 5688888888999999998766 99999999988743 211 11122222221 23567799
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 280 ENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 280 ~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
+++++|...|+-||..|+..++..+++
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 999999999999999999997777544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00067 Score=57.05 Aligned_cols=103 Identities=16% Similarity=0.060 Sum_probs=87.2
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhc---CChHHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFH---GNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
|-.|...|...|+++.|...|...... .+++..+..+..++... ....++..+|++++..++.+..+...|...+.
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~af 238 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAF 238 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 444788899999999999999877665 45677777777776543 34679999999999999999999999999999
Q ss_pred hcCchhhHHHHHHHHhhhccccCCCCC
Q 039757 387 GVGRYVDAERLRRVMDERNALKFPGRS 413 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m~~~~~~~~~~~~ 413 (415)
..|++.+|...|+.|.+.....+|..+
T Consensus 239 e~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 239 EQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999998887777643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00025 Score=61.66 Aligned_cols=246 Identities=12% Similarity=-0.014 Sum_probs=158.1
Q ss_pred HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCc----hhHHHHHHHHHhcCCCchHHHHHHHHH--H--cCCC-Cch
Q 039757 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDS----FTYSFLIRTCVTLSYPNLGTQLHAVIS--K--VGFQ-SHV 103 (415)
Q Consensus 33 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~ 103 (415)
.-+++.|+.+..+.+|+... +.|-. |. .+|..|..+|.-.+++++|+++...=+ . .|-+ -..
T Consensus 25 ERLck~gdcraGv~ff~aA~---qvGTe------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAAL---QVGTE------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHhccchhhhHHHHHHHH---Hhcch------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 46789999999999999999 66666 43 346666777777888888888754321 1 1111 122
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC---------CchhhHHHHHHHHHhhCC--------------------HHHHH
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE---------RNLVTWNVMITGLVKWGE--------------------LEYAR 154 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~--------------------~~~a~ 154 (415)
.....|-..+--.|.+++|...-.+-.. .....+..+...|...|+ ++.|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 2333455555566777777654333221 123356667777765543 34455
Q ss_pred HHHhhCCC---------CChhHHHHHHHHHHhccCCCCcc---------------CCCchHHHHhHHHHHhhcCChhHHH
Q 039757 155 SLFEEMPC---------RNVVSWTGILDGYTRMNRSNGAS---------------TEPSEITILAVLPAIWQNGAVRNCQ 210 (415)
Q Consensus 155 ~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~a~---------------~~~~~~~~~~ll~~~~~~~~~~~a~ 210 (415)
++|.+=.+ .....|..|.+.|.-.|+++.|. .......+..+..++.-.|+++.|.
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ 255 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI 255 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence 55443211 12234666666677777777776 2223456778888888899999998
Q ss_pred HHHhhhh----hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-------CCChhhHHHHHHHHHccCchHHHH
Q 039757 211 LIHGYGE----KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-------RKNLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 211 ~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~ 279 (415)
+.|+... +.|-.........+|.+.|.-..++++|+.++.+-... -.....|-.|..+|...|..++|+
T Consensus 256 ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 256 EHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 8877654 33333334566677888888888999999988764322 134567888999999999999998
Q ss_pred HHHHHHHh
Q 039757 280 ENFERMQK 287 (415)
Q Consensus 280 ~~~~~m~~ 287 (415)
.+.+.-.+
T Consensus 336 ~fae~hl~ 343 (639)
T KOG1130|consen 336 YFAELHLR 343 (639)
T ss_pred HHHHHHHH
Confidence 77766544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0045 Score=53.74 Aligned_cols=163 Identities=9% Similarity=-0.030 Sum_probs=76.2
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhcCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----C-CC--hhhHHH
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKRGF----NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----R-KN--LVSWTS 264 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~--~~~~~~ 264 (415)
....|...+++++|...|........ ...-...|.....+|.+. ++++|.+.+++.... + ++ ...+..
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445556666666655555443211 111223344444444443 777777776665543 1 11 223555
Q ss_pred HHHHHHcc-CchHHHHHHHHHHHhcCC-CCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----
Q 039757 265 IISGFAMH-GMGKAAVENFERMQKVGL-KPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE----- 337 (415)
Q Consensus 265 li~~~~~~-~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 337 (415)
+...|-.. |++++|.+.|++....-- .......+.+ +..+...+.+.|++++|.++|+++...
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~----------~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC----------LLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH----------HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH----------HHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 55666666 677777777766554200 0111222221 223666667777777777776654322
Q ss_pred --CcCHH-HHHHHHHHHhhcCChHHHHHHHHHHHH
Q 039757 338 --ITDVV-VRRILLGACSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 338 --~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 369 (415)
..+.. .+-..+-++...||...|.+.+++...
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11111 122223344555666666666666544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=50.57 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=77.9
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 393 (415)
..-+...|++++|..+|+-+... .-+...|..|..++-..+++++|+..+......++.|+..+...+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33467899999999999866544 23677788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 039757 394 AERLRRVMDE 403 (415)
Q Consensus 394 A~~~~~~m~~ 403 (415)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00046 Score=57.72 Aligned_cols=87 Identities=15% Similarity=0.021 Sum_probs=77.4
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHH
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 396 (415)
+.+.+++.+|+..|.+.+...| |.+.|..=..+|.+.|.++.|++-.+..+..+|....+|..|..+|...|++++|.+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 6678999999999988877744 677788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 039757 397 LRRVMDER 404 (415)
Q Consensus 397 ~~~~m~~~ 404 (415)
.|++..+.
T Consensus 171 aykKaLel 178 (304)
T KOG0553|consen 171 AYKKALEL 178 (304)
T ss_pred HHHhhhcc
Confidence 98776553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0017 Score=51.61 Aligned_cols=89 Identities=12% Similarity=-0.173 Sum_probs=70.8
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHH--
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA-- 386 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-- 386 (415)
.+...+...|++++|...|+......|+ ..++..+...+...|++++|+..+++.....+.....+..++.++.
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3556678899999999999877544222 3478889999999999999999999999988877777888887777
Q ss_pred -----hcCchhhHHHHHHHH
Q 039757 387 -----GVGRYVDAERLRRVM 401 (415)
Q Consensus 387 -----~~g~~~~A~~~~~~m 401 (415)
+.|++++|...+++.
T Consensus 120 ~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 120 GEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred hHHHHHcccHHHHHHHHHHH
Confidence 788888666665543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0028 Score=53.19 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=87.7
Q ss_pred HHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchH
Q 039757 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGK 276 (415)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 276 (415)
.-..+.+++++|...|.+.++. .|.|+..|..=..+|.+.|.++.|++-.+......|. ..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3456789999999999999997 7889999999999999999999999999998886553 568999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
+|...|++..+ +.|+-.+|-.-|
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHH
Confidence 99999999887 689999877643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0015 Score=42.95 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccC-chHHHHHHHHHHHh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHG-MGKAAVENFERMQK 287 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~ 287 (415)
++.+|..+...+...|++++|+..|++..+..| +...|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 455666777777777777777777777766644 4556777777777777 67777777776655
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.066 Score=44.40 Aligned_cols=164 Identities=13% Similarity=0.049 Sum_probs=92.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCC----ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcc
Q 039757 235 TYAKCGCIFSALKLFEDISVERK----NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLH 310 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 310 (415)
.-.+.|++++|.+.|+.+..+.| ...+.-.++.++-+.++++.|+..+++....-..-...-|...|.+.+..
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~--- 119 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF--- 119 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh---
Confidence 34566777777777777776632 22345556666777777777777777766543222233344444432210
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCcC------HHHH------------HHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEITD------VVVR------------RILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
-.+-+.-.......+|..-|+....+.|+ ...- ..+.+-|.+.|.+..|..-++.|.+..+
T Consensus 120 -~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~ 198 (254)
T COG4105 120 -FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYP 198 (254)
T ss_pred -ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccc
Confidence 00000000001122233333333333332 2111 1245568888999999999999999865
Q ss_pred CC---CccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 373 GN---GGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 373 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
.. ...+..+..+|...|..++|...-+-+.
T Consensus 199 ~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 199 DTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred cccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 53 3566677888999999998887765544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0095 Score=45.97 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh-----cCCCCChhhHH
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK-----VGLKPNRVTFL 298 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~ 298 (415)
+...++..+...|++++|.++.+.+....| +...|..+|.+|...|+..+|..+|+++.. .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345567778889999999999999998865 778999999999999999999999998854 49999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.01 Score=48.91 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li 266 (415)
+.++...|.-.-+..-.|+..+|.+.++.|.+..|...+-+.++
T Consensus 283 ~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 283 PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 33666666555566667888899999998888766655555433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0047 Score=45.33 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCc--hhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc----hhhHHHHHHHH
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSH--VYVNTALVNMYVSLGFLKDSSKLFDELPE--RN----LVTWNVMITGL 144 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~ 144 (415)
.+..++-..|+.++|..+|+.....|.... ...+-.+...+...|++++|+.+|++... |+ ......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 455677788999999999999999887654 34555677889999999999999998764 43 22233344577
Q ss_pred HhhCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 039757 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYT 176 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 176 (415)
...|+.++|++.+-....++...|.--|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999998776666556666665554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0056 Score=52.09 Aligned_cols=102 Identities=11% Similarity=-0.023 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh----hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 302 (415)
..|...+..+.+.|++++|...|+......|+. ..+.-+..+|...|++++|...|+.+.+. .|+.......+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl- 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM- 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH-
Confidence 334444444455566666666666666654432 34555666666666666666666666553 23322211111
Q ss_pred HHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC
Q 039757 303 ACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340 (415)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (415)
-.+...+...|+.++|.++|+.+....|+
T Consensus 221 ---------~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 221 ---------FKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred ---------HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 11333455556666666666555544444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.24 Score=47.25 Aligned_cols=317 Identities=13% Similarity=0.050 Sum_probs=182.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHH---cCCCCchhh
Q 039757 29 NTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISK---VGFQSHVYV 105 (415)
Q Consensus 29 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~ 105 (415)
..+|.-+...+.+..|+++-..+. . |.......|.....-+.+..+.. -..+++.+.+ ....| ...
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~---~------p~~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~-~iS 509 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLN---L------PESQGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTP-GIS 509 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhC---C------ccccccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCC-cee
Confidence 345777788889999999888875 1 31113566777777777665332 2333333322 22233 344
Q ss_pred HHHHHHHHHcCCChhHHHHHhcccCC--------CchhhHHHHHHHHHhhCCHHHHHHHHhhCCC-CChhHHHHHHHHHH
Q 039757 106 NTALVNMYVSLGFLKDSSKLFDELPE--------RNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGILDGYT 176 (415)
Q Consensus 106 ~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~ 176 (415)
|..+...-..+|+.+.|..+++.=+. -+..-+...+.-+.++|+.+-...++-.+.. .+...+...++-
T Consensus 510 y~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~-- 587 (829)
T KOG2280|consen 510 YAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRN-- 587 (829)
T ss_pred HHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 66666666689999999998876543 1333466677778888888888888777652 222222222211
Q ss_pred hccCCCCccCCCchHHHHhHHH--------HHhhcCChhHHHHHH--hh----hhhcCCCCCCHHHHHHHHHHHHhcCCH
Q 039757 177 RMNRSNGASTEPSEITILAVLP--------AIWQNGAVRNCQLIH--GY----GEKRGFNAFDIRVSNCLIDTYAKCGCI 242 (415)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~ll~--------~~~~~~~~~~a~~~~--~~----~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (415)
.+.....|.-+++ .+.+.++-..+...+ +. -...|..| ......+.+.+....
T Consensus 588 ---------~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~----~lk~~a~~~a~sk~~ 654 (829)
T KOG2280|consen 588 ---------QPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIP----ALKTAANAFAKSKEK 654 (829)
T ss_pred ---------chhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccch----hHHHHHHHHhhhhhh
Confidence 1111111211111 111122211111111 11 00111122 223334444444432
Q ss_pred HH----------HHHHHHHhhhh-C--CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 243 FS----------ALKLFEDISVE-R--KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 243 ~~----------A~~~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
.- -+.+.+.+..+ + -.-.+.+--+..+..-|+..+|.++-.+.+ .||...|..
T Consensus 655 s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wL---------- 720 (829)
T KOG2280|consen 655 SFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWL---------- 720 (829)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHH----------
Confidence 21 12222222222 1 122345556677788899999998887775 488887776
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
-+.++...++|++-+++-++.+ .+.-|..++.+|.+.|+.++|.+++.+... +...+.+|.+.|
T Consensus 721 ----k~~aLa~~~kweeLekfAkskk----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~ 784 (829)
T KOG2280|consen 721 ----KLTALADIKKWEELEKFAKSKK----SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVG 784 (829)
T ss_pred ----HHHHHHhhhhHHHHHHHHhccC----CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhc
Confidence 4455888999999888776655 357788899999999999999988876422 226788999999
Q ss_pred chhhHHHHHHHH
Q 039757 390 RYVDAERLRRVM 401 (415)
Q Consensus 390 ~~~~A~~~~~~m 401 (415)
++.+|.++--+-
T Consensus 785 ~~~eAad~A~~~ 796 (829)
T KOG2280|consen 785 DVKEAADLAAEH 796 (829)
T ss_pred cHHHHHHHHHHh
Confidence 999998775443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0034 Score=46.06 Aligned_cols=89 Identities=17% Similarity=-0.022 Sum_probs=71.1
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC---CCccHHHHHHHHH
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT----DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG---NGGDYVLMYNILA 386 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 386 (415)
+..++-..|+.++|+.+|++.....+ ....+-.+...+...|++++|..++++.....|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567889999999999987766512 1335667788899999999999999999988776 5556666777899
Q ss_pred hcCchhhHHHHHHHHh
Q 039757 387 GVGRYVDAERLRRVMD 402 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m~ 402 (415)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 9999999999876544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0048 Score=49.52 Aligned_cols=102 Identities=11% Similarity=0.150 Sum_probs=80.0
Q ss_pred CcchHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC-------------
Q 039757 21 LLHHTLLFNTLLHFYSLA-----DSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS------------- 82 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~------------- 82 (415)
-..|-.+|..+++.+.+. |..+=....++.|. +-|+. . |..+|+.|+..+=+..
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~---efgv~--k---DL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD---EFGVE--K---DLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH---HcCCc--c---cHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 457889999999999764 66666777778888 99999 8 9999999999875432
Q ss_pred ---CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC-hhHHHHHhcccC
Q 039757 83 ---YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDELP 130 (415)
Q Consensus 83 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~ 130 (415)
+-+-|++++++|...|+-||..++..+++.+++.+. +.+..+++-.|.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 235689999999999999999999999999987775 344444443343
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0057 Score=53.62 Aligned_cols=280 Identities=13% Similarity=0.049 Sum_probs=158.2
Q ss_pred HHHhcCCCchHHHHHHHHHHcCCCCchh----hHHHHHHHHHcCCChhHHHHHhcccC-------C--CchhhHHHHHHH
Q 039757 77 TCVTLSYPNLGTQLHAVISKVGFQSHVY----VNTALVNMYVSLGFLKDSSKLFDELP-------E--RNLVTWNVMITG 143 (415)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~-------~--~~~~~~~~li~~ 143 (415)
-+++.|+......+|+..++.| ..|.. +|..|-.+|.-.+++++|+++-..=. . -...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3789999999999999999988 34544 45666677777888999987643211 1 112233344444
Q ss_pred HHhhCCHHHHHHHHhhCC----C-----CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHh
Q 039757 144 LVKWGELEYARSLFEEMP----C-----RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~----~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (415)
+--.|.+++|+-.-.+-. + .....+-.+.+.|...|+.-.-..+-+...++.=. ...++.|.++|.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev-----~~al~~Av~fy~ 179 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEV-----TSALENAVKFYM 179 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHH-----HHHHHHHHHHHH
Confidence 555566766654432221 1 11233445566666655543332111111111000 011223333333
Q ss_pred hh----hhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----C---CChhhHHHHHHHHHccCchHHHHHHHH
Q 039757 215 YG----EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----R---KNLVSWTSIISGFAMHGMGKAAVENFE 283 (415)
Q Consensus 215 ~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 283 (415)
+- .+.|-.......|-.|.+.|--.|+++.|+..-+.-... + .-...+..+..++.-.|+++.|.+.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 22 222211113445666677777778899888765543221 1 233567888889999999999999887
Q ss_pred HHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc-------CCCCCcCHHHHHHHHHHHhhcCC
Q 039757 284 RMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG-------IPSEITDVVVRRILLGACSFHGN 356 (415)
Q Consensus 284 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~~~p~~~~~~~l~~~~~~~~~ 356 (415)
.-...-+.....+... +.|. +|...|.-..++++|+..+.+ +....-....+-+|..++...|.
T Consensus 260 ~tl~LAielg~r~vEA--QscY-------SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEA--QSCY-------SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred HHHHHHHHhcchhHHH--HHHH-------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 7543222222222111 1222 255556666677777776543 22223355678889999999999
Q ss_pred hHHHHHHHHHHHHcc
Q 039757 357 VEMGERVTRKVLEME 371 (415)
Q Consensus 357 ~~~a~~~~~~~~~~~ 371 (415)
.++|+.+.+..++..
T Consensus 331 h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 331 HRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888776654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.007 Score=49.81 Aligned_cols=136 Identities=8% Similarity=-0.028 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhC--CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 229 SNCLIDTYAKCGCIFSALKLFEDISVER--KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
-+.++.++...|.+.-..+.++++.+.. .++..-..|++.-.+.|+.+.|...|++..+..-+.|..+++.++.-
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~--- 256 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM--- 256 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh---
Confidence 3456666666777777777777777753 25556677777777788888888888877766556666666654432
Q ss_pred CCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 307 GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.....|.-++++..|...+.++....| ++...|.-.-+..-.|+..+|++..+.|++..|.
T Consensus 257 ------n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 257 ------NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred ------hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 244455667777778777777766522 4444444444444567788888888888877766
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.02 Score=48.46 Aligned_cols=114 Identities=10% Similarity=-0.039 Sum_probs=94.4
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhhCC-Chhh
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG---CIFSALKLFEDISVERK-NLVS 261 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~-~~~~ 261 (415)
.+-|...|-.|.+.|...|+.+.|...|....+. .|+++..+..+..++..+. ...++.++|+++....| |+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3556788999999999999999999999999998 5778888888888766554 56789999999998865 6677
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
...|...+...|++.+|...|+.|.+. -|.......++..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 888889999999999999999999986 4555566665544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.15 Score=43.05 Aligned_cols=90 Identities=7% Similarity=0.031 Sum_probs=58.5
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC----hhhHHHHHHH
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSIISG 268 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~ 268 (415)
+..++.-+-...-..+|...+..+... -...--.+...|.+.|.+..|..-|+.+.+.-|+ ......++.+
T Consensus 147 ~~~li~~yP~S~ya~~A~~rl~~l~~~-----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a 221 (243)
T PRK10866 147 FSKLVRGYPNSQYTTDATKRLVFLKDR-----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA 221 (243)
T ss_pred HHHHHHHCcCChhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 334444444444445555444444332 1122224667799999999999999999887443 3456678889
Q ss_pred HHccCchHHHHHHHHHHHh
Q 039757 269 FAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~ 287 (415)
|...|..++|..+...+..
T Consensus 222 y~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 222 YRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHcCChHHHHHHHHHHhc
Confidence 9999999999888776643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.053 Score=42.40 Aligned_cols=128 Identities=16% Similarity=0.083 Sum_probs=100.9
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---ChhhHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK---NLVSWT 263 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~ 263 (415)
.|+...-..+..++.+.|+..+|...|++.... +...|....-.+.++....+++..|...++++.+.+| ++.+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 455556667888899999999999999998875 4455888999999999999999999999999988744 455677
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
.+.+.+...|++..|+.-|+.....--.|....|. ...+.++|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y----------------~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYY----------------AEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH----------------HHHHHHhcchhHHHHHH
Confidence 78889999999999999999999864344444432 33467788888775543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0017 Score=43.82 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----C---CC-hhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVE----R---KN-LVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~---~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
...+++.+..+|...|++++|.+.|++.... + |+ ..+++.+..+|...|++++|++.+++..+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567788888899999999999988887654 2 22 45688888899999999999999887654
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.03 Score=52.29 Aligned_cols=163 Identities=20% Similarity=0.106 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh---------hhHHHHHHHHHc----cCchHHHHHHHHHHHhcCCCCC
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNL---------VSWTSIISGFAM----HGMGKAAVENFERMQKVGLKPN 293 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~ 293 (415)
.....++...+-.|+-+.+.+.+.+..+. .+. ..|...+..++. ....+.|.++++.+.+. -|+
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~ 265 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN 265 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC
Confidence 34456777778888999999988886654 222 235555554443 45778899999999885 688
Q ss_pred hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----CcCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 039757 294 RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-----ITDVVVRRILLGACSFHGNVEMGERVTRKVL 368 (415)
Q Consensus 294 ~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 368 (415)
...|... -.+.+...|++++|++.|++.... ......+--+...+...+++++|.+.|..+.
T Consensus 266 s~lfl~~-------------~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 266 SALFLFF-------------EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred cHHHHHH-------------HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 8777653 234477899999999999976543 2233345556777888999999999999999
Q ss_pred HcccCCCccHHHHH-HHHHhcCch-------hhHHHHHHHHhhhc
Q 039757 369 EMERGNGGDYVLMY-NILAGVGRY-------VDAERLRRVMDERN 405 (415)
Q Consensus 369 ~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~m~~~~ 405 (415)
+...-+...|..+. .++...|+. ++|.+++++.....
T Consensus 333 ~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 333 KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 87655555555433 345677888 88999998876644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0052 Score=51.16 Aligned_cols=90 Identities=13% Similarity=0.029 Sum_probs=76.1
Q ss_pred hHhcCCHHHHHHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC---CCccHHHHHHHHHhcCc
Q 039757 318 LGRAGRLEQAEKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERG---NGGDYVLMYNILAGVGR 390 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 390 (415)
+.+.|++.+|...|.......|+ ...+--|..++...|++++|..+|..+.+..|. -++.+..|+....+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 45778899999999988877553 334556899999999999999999999998877 45778899999999999
Q ss_pred hhhHHHHHHHHhhhccc
Q 039757 391 YVDAERLRRVMDERNAL 407 (415)
Q Consensus 391 ~~~A~~~~~~m~~~~~~ 407 (415)
.++|..+|+++.++-..
T Consensus 231 ~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 231 TDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 99999999999876543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0075 Score=40.01 Aligned_cols=56 Identities=11% Similarity=-0.113 Sum_probs=26.7
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 257 (415)
+.+.++++.|..+++.+... .|.++..+.....++.+.|++++|.+.|+...+..|
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34444555555555555444 333444444444445555555555555544444433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.11 Score=38.06 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=80.6
Q ss_pred HhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHH
Q 039757 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVD 316 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~ 316 (415)
.-.|..++..++..+.... .+..-||-+|.-....-+-+-..++++..-+ ..|...
T Consensus 13 ildG~V~qGveii~k~v~S-sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~-------------------- 68 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS-SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISK-------------------- 68 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH-S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG--------------------
T ss_pred HHhchHHHHHHHHHHHcCc-CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchh--------------------
Confidence 3456777777877776664 3445566555555544444544555544432 334333
Q ss_pred HhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHH
Q 039757 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 396 (415)
+|++......+-.+-. +......-+..+...|+-+.-.++.+.+...+..+++....+..+|.+.|+..++.+
T Consensus 69 ----C~NlKrVi~C~~~~n~---~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 69 ----CGNLKRVIECYAKRNK---LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp -----S-THHHHHHHHHTT------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred ----hcchHHHHHHHHHhcc---hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHH
Confidence 4444444444433322 445556667777888888888888888877666778888888889999999999999
Q ss_pred HHHHHhhhccc
Q 039757 397 LRRVMDERNAL 407 (415)
Q Consensus 397 ~~~~m~~~~~~ 407 (415)
++++..+.|++
T Consensus 142 ll~~ACekG~k 152 (161)
T PF09205_consen 142 LLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-H
T ss_pred HHHHHHHhchH
Confidence 99888888875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.006 Score=47.07 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh-----hccccCC
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE-----RNALKFP 410 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 410 (415)
.....++..+...|+++.|...++.+...+|.+...|..++.+|.+.|+..+|.++++++.+ .|+.|.|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 35566777788899999999999999999999999999999999999999999999988853 4665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.13 Score=45.49 Aligned_cols=322 Identities=11% Similarity=-0.029 Sum_probs=170.4
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC-chhhHHHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS-HVYVNTALV 110 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li 110 (415)
-..+.+..++..|+..+...+ ...+. +..-|..-...+...++++.+.--.+.-++. +| ......-.-
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai---~~~pd------~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~ 124 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAI---DMCPD------NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREG 124 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHH---HhCcc------chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchh
Confidence 345566677788888888887 55555 5555665566666667776666555444332 11 112222233
Q ss_pred HHHHcCCChhHHHHHhccc---------------CC-----CchhhHHHH-HHHHHhhCCHHHHHHHHhhCCCCChhHHH
Q 039757 111 NMYVSLGFLKDSSKLFDEL---------------PE-----RNLVTWNVM-ITGLVKWGELEYARSLFEEMPCRNVVSWT 169 (415)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~---------------~~-----~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 169 (415)
.++...++..+|.+.++.- .. |...+|-.+ ..++.-.|+.++|.+.--.+.+.|.
T Consensus 125 ~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---- 200 (486)
T KOG0550|consen 125 QCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---- 200 (486)
T ss_pred hhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc----
Confidence 3444444444444444311 10 111222221 1233445666666555444433221
Q ss_pred HHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHH----------HHHHHHhc
Q 039757 170 GILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC----------LIDTYAKC 239 (415)
Q Consensus 170 ~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------li~~~~~~ 239 (415)
.+......--.++...++.+.+...|++.++.+-...+...-.. =.+-..+.
T Consensus 201 ------------------~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 201 ------------------TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred ------------------chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 11111111112334567788888888888877422222222111 23345678
Q ss_pred CCHHHHHHHHHHhhhhCC-----ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHH
Q 039757 240 GCIFSALKLFEDISVERK-----NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCL 314 (415)
Q Consensus 240 g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l 314 (415)
|++.+|.+.|.+.....| +...|-.......+.|+.++|+.--++.... |..-.-.++. -
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~-----------r 327 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLR-----------R 327 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHH-----------H
Confidence 999999999999888744 4455777777788899999999998887763 4333222221 3
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHH---HHHhhcCC--hHHHHHHHHHHHHcccCCCccHHHHHHHH---H
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL---GACSFHGN--VEMGERVTRKVLEMERGNGGDYVLMYNIL---A 386 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~ 386 (415)
...+...++|++|.+-|+...+...+...-..+. .++-+.++ +-+.+-+-..... .+.-.+|..+.-++ .
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~--~eikkayrk~AL~~Hpd~ 405 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASD--DEIKKAYRKLALVHHPDK 405 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhccc--chhhhHHHHHHHHhCCCc
Confidence 3446677899999999987665522322333333 33332222 2222221111111 11234555554444 2
Q ss_pred hcCchhhHHHHHHHHhh
Q 039757 387 GVGRYVDAERLRRVMDE 403 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m~~ 403 (415)
..|.-.+|...|++.-.
T Consensus 406 ~agsq~eaE~kFkevge 422 (486)
T KOG0550|consen 406 NAGSQKEAEAKFKEVGE 422 (486)
T ss_pred CcchhHHHHHHHHHHHH
Confidence 35666778887777654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0042 Score=41.90 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcc---cC----CCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEME---RG----NGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
.+++.+...|...|++++|+..+++..+.. .+ -..++..++.++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 477888889999999999999999988653 11 145778899999999999999999988764
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0084 Score=53.90 Aligned_cols=62 Identities=15% Similarity=-0.127 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc---cHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG---DYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
..+..+..+|...|++++|+..|++.++.+|.+.. +|..+..+|...|+.++|.+.+++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444455555555555555555554444332 244455555555555555555444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0033 Score=36.89 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
.++..+...|...|++++|+++++++++..|.++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457778888999999999999999999999988887776653
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.24 Score=37.73 Aligned_cols=128 Identities=11% Similarity=0.139 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhH
Q 039757 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVN 106 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 106 (415)
.-..++..+...+.+......++.+. ..+.. +....+.++..+++.+. +...+.+.. ..+....
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~---~~~~~------~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~ 72 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESAL---KLNSE------NPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDI 72 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHH---ccCcc------chhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCH
Confidence 34577888888889999999999988 55544 77889999999987643 333344432 1234445
Q ss_pred HHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhh-CCHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 039757 107 TALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKW-GELEYARSLFEEMPCRNVVSWTGILDGYTR 177 (415)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 177 (415)
..++..|.+.+.++++..++..+.. |...+..+... ++.+.|.+++.+- .+...|..++..+..
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l~ 137 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 5578888888889999999888754 33344444444 8899999988874 355677777766654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.63 Score=41.94 Aligned_cols=91 Identities=13% Similarity=0.027 Sum_probs=71.3
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCCCC---CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIPSE---ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
.|-.++....+..-++.|..+|-+..+. .+++.++++++..++ .|+...|-++|+.-+...++++.--...+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3445677777777789999999887766 568888999998765 578899999999988888776655556777788
Q ss_pred hcCchhhHHHHHHHH
Q 039757 387 GVGRYVDAERLRRVM 401 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m 401 (415)
+-++-..|..+|+..
T Consensus 478 ~inde~naraLFets 492 (660)
T COG5107 478 RINDEENARALFETS 492 (660)
T ss_pred HhCcHHHHHHHHHHh
Confidence 888888888888743
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.034 Score=41.26 Aligned_cols=90 Identities=9% Similarity=-0.106 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcC-------CCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHH-
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHS-------HSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVIS- 95 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 95 (415)
|..++..+|.++++.|+.+....+++..-.+...+ ....|..|+..+..+++.+++..+++..|.++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45688999999999999999999998765221111 1111233366677777777777777777777777663
Q ss_pred HcCCCCchhhHHHHHHHH
Q 039757 96 KVGFQSHVYVNTALVNMY 113 (415)
Q Consensus 96 ~~g~~~~~~~~~~li~~~ 113 (415)
..+++.+..+|..|+.-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 345655666677666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.18 Score=38.81 Aligned_cols=112 Identities=12% Similarity=-0.027 Sum_probs=70.7
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHH
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 279 (415)
-.+.++.+.++.++.-+.-. .|..+..-..-...+...|+|.+|.++|+++....|....-..|+..|....+-..=.
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 35677889999998888876 4544444444555678899999999999998887665555555655555443322222
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH
Q 039757 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 280 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (415)
..-+++...+-.|+... |+..+....+...|...
T Consensus 98 ~~A~evle~~~d~~a~~-----------------Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 98 RYADEVLESGADPDARA-----------------LVRALLARADLEPAHEA 131 (160)
T ss_pred HHHHHHHhcCCChHHHH-----------------HHHHHHHhccccchhhh
Confidence 33344566554555554 55556666665555553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0024 Score=34.95 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=29.3
Q ss_pred HHHHHHcccCCCccHHHHHHHHHhcCchhhHH
Q 039757 364 TRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
+++.++.+|.++.+|..|+..|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888999999999999999999999999986
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.11 Score=40.03 Aligned_cols=89 Identities=8% Similarity=-0.031 Sum_probs=76.3
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCch
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMG 275 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~ 275 (415)
...+...|++++|+.+|..+... .|.+..-+..|..++-..+++++|...|...-... -|+..+.....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33457899999999999999986 56678888889999999999999999998765553 4667788889999999999
Q ss_pred HHHHHHHHHHHh
Q 039757 276 KAAVENFERMQK 287 (415)
Q Consensus 276 ~~A~~~~~~m~~ 287 (415)
+.|...|.....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999999887
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.15 Score=43.81 Aligned_cols=149 Identities=10% Similarity=-0.000 Sum_probs=73.5
Q ss_pred hcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHH----HHHHHHHccCchH
Q 039757 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWT----SIISGFAMHGMGK 276 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~----~li~~~~~~~~~~ 276 (415)
-.|+..+|-..++++.+. .|.|...+.--=++|...|+.+.-...++++... .+|...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 355555555556666655 4555555555555666666666666666666554 33332222 2223344556666
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-C----cCHHHHHHHHHHH
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-I----TDVVVRRILLGAC 351 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~----p~~~~~~~l~~~~ 351 (415)
+|++.-++..+. .|.... . ..++.+.+...|+..++.++..+-... . .-..-|-...-.+
T Consensus 193 dAEk~A~ralqi--N~~D~W-a------------~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCW-A------------SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH 257 (491)
T ss_pred hHHHHHHhhccC--CCcchH-H------------HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence 666666555442 222211 1 112444455566666666665544433 0 0011122222234
Q ss_pred hhcCChHHHHHHHHHH
Q 039757 352 SFHGNVEMGERVTRKV 367 (415)
Q Consensus 352 ~~~~~~~~a~~~~~~~ 367 (415)
...+.++.|+++|+.-
T Consensus 258 iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDRE 273 (491)
T ss_pred hcccchhHHHHHHHHH
Confidence 4556666666666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.26 Score=46.11 Aligned_cols=167 Identities=17% Similarity=0.086 Sum_probs=107.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHh----hcCChhHHHHH
Q 039757 138 NVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW----QNGAVRNCQLI 212 (415)
Q Consensus 138 ~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~----~~~~~~~a~~~ 212 (415)
..++...+-.||-+.+++.+.+..+ .++..--+ ..--..|..++..++ ...+.+.+.++
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la----------------~L~LL~y~~~~~~~~~~~~~~~~~~~a~~l 255 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLA----------------ALVLLWYHLVVPSFLGIDGEDVPLEEAEEL 255 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHH----------------HHHHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence 3444455567888888888876543 22211000 011122333333332 35678889999
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CCChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKNLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
+..+.++ .|......-.-.+.+...|++++|.+.|++.... ......+--+.-++....++++|...|.++.+
T Consensus 256 L~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 256 LEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 9999998 5634433344467788899999999999986643 12334455666778889999999999999988
Q ss_pred cCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCH-------HHHHHHHhcCCC
Q 039757 288 VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRL-------EQAEKIALGIPS 336 (415)
Q Consensus 288 ~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~~~~ 336 (415)
.. ..+..+|..+..+| +...|+. ++|.++|.++..
T Consensus 334 ~s-~WSka~Y~Y~~a~c-------------~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 334 ES-KWSKAFYAYLAAAC-------------LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred cc-ccHHHHHHHHHHHH-------------HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 52 34566666655555 6666766 888888876543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.49 Score=38.81 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCChh----hHHHHHHHHHccCchHHHH
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKNLV----SWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~ 279 (415)
+...|.+.|.+..|..-++.+.+.-|++. ..-.++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 56778888888888888888887755443 3566777788888766443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.028 Score=50.66 Aligned_cols=101 Identities=11% Similarity=-0.038 Sum_probs=64.3
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhH
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI---RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 262 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 262 (415)
.+.+...++.+..++...|++++|...|+..++. .|.+. .+|..+..+|...|+.++|.+.+++..+.. ...|
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~~f 146 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NLKF 146 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--chhH
Confidence 4555667778888888888888888888887776 45444 347778888888888888888888877731 1122
Q ss_pred HHHHH--HHHccCchHHHHHHHHHHHhcCC
Q 039757 263 TSIIS--GFAMHGMGKAAVENFERMQKVGL 290 (415)
Q Consensus 263 ~~li~--~~~~~~~~~~A~~~~~~m~~~g~ 290 (415)
..+.. .+..-.+.++..++++.+.+.|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 01112233456667777776664
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.87 Score=40.30 Aligned_cols=246 Identities=15% Similarity=0.128 Sum_probs=154.9
Q ss_pred cCCChhHHHHHhcccC---CCchhhHHHHHHHH--HhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCc
Q 039757 115 SLGFLKDSSKLFDELP---ERNLVTWNVMITGL--VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189 (415)
Q Consensus 115 ~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 189 (415)
-.|+-..|.++-.+-. ..|....-.++.+- .-.|+.+.|.+-|+.|.. |+++ .
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt---------------------R 153 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET---------------------R 153 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH---------------------H
Confidence 3567777766655443 24444444444333 346889999999998863 1111 0
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCChh--hHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKNLV--SWTS 264 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~~~ 264 (415)
..-+..+.-.--+.|+.+.|..+-+..... -|.-.......+...|..|+|+.|+++.+.-... .+++. .-..
T Consensus 154 llGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAv 231 (531)
T COG3898 154 LLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAV 231 (531)
T ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Confidence 111222333335678888888877777665 4667888999999999999999999999876654 34432 2233
Q ss_pred HHHHHHc---cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH
Q 039757 265 IISGFAM---HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDV 341 (415)
Q Consensus 265 li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (415)
|+.+-.. .-+...|...-.+..+ +.||..--..+ -..++.+.|++.++-.+++.+-+..|.+
T Consensus 232 LLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~-------------AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 232 LLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVV-------------AARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHH-------------HHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 3332221 1245555555544443 56666543322 3456899999999999999988876777
Q ss_pred HHHHHHHHHHhhcCChHHH-HHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHH
Q 039757 342 VVRRILLGACSFHGNVEMG-ERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 401 (415)
.++...+ +.+.|+.... .+-.+++.+..+.+......+..+-...|++..|..--+..
T Consensus 297 ~ia~lY~--~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 297 DIALLYV--RARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHHHH--HhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 6665443 3466664322 23334445556678888888999988999988776554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.15 Score=38.40 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCC----ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 231 CLIDTYAKCGCIFSALKLFEDISVERK----NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
.-.....+.|++++|.+.|+.+...-| ....--.|+.+|.+.+++++|...+++.++....-...-|...+.+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 344556678999999999999988722 3345667889999999999999999999886444334555554444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.89 Score=40.66 Aligned_cols=174 Identities=10% Similarity=-0.041 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC----C-ChhhHHHHHHHHHc---cCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVER----K-NLVSWTSIISGFAM---HGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
+.+...++-+|-...+++..+++.+.+...+ + +...-....-++.+ .|+.++|+.++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3334455556777777777777777776641 0 11112233445555 67777888877775555556666666
Q ss_pred HHHHHHHccCCcchHHHHHH-hHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCC-hH---HHHHHH----HHHH
Q 039757 298 LSVLNACSHGGLHYGCLVDM-LGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGN-VE---MGERVT----RKVL 368 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~~~ 368 (415)
..+=..+-. ..+.. +.....+++|...|.+.-...|+..+--.++..+...|. .+ +..++- ..+.
T Consensus 221 gL~GRIyKD------~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 221 GLLGRIYKD------LFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHH------HHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 654333211 01110 122234667777766443332333321112222222222 11 222222 1111
Q ss_pred HcccC-CCc---cHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 369 EMERG-NGG---DYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 369 ~~~~~-~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.+.. +.. .+..+..++.-.|++++|.+..++|.+..
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 22211 222 23356666777788888888888877653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.16 Score=44.97 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=74.6
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
+..|.-.|.+.+++.+|++.-...... .+|+...-.=.++|...|+++.|+..|+++.+..|.|-.+-..|+..-.+..
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 334666789999999999988776655 4577777777889999999999999999999999999888888887777666
Q ss_pred chhhH-HHHHHHHhh
Q 039757 390 RYVDA-ERLRRVMDE 403 (415)
Q Consensus 390 ~~~~A-~~~~~~m~~ 403 (415)
++.+. .++|..|-.
T Consensus 340 ~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHhh
Confidence 65554 777777754
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.023 Score=49.98 Aligned_cols=90 Identities=17% Similarity=0.031 Sum_probs=74.2
Q ss_pred HhHhcCCHHHHHHHHhcCCCC----------------CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHH
Q 039757 317 MLGRAGRLEQAEKIALGIPSE----------------ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVL 380 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~----------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (415)
.|.+.|++..|..-|++.... ..-..++..+.-++.+.+++..|++..++.++.+++|....+.
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR 296 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYR 296 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH
Confidence 477788888887776653221 1233466778888999999999999999999999999999999
Q ss_pred HHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 381 MYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 381 l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
-+.+|...|.++.|+..|+++.+...
T Consensus 297 rG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.11 Score=39.13 Aligned_cols=88 Identities=16% Similarity=0.034 Sum_probs=66.5
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCC-ccHHHHHHHHHh--cCc
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT----DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNG-GDYVLMYNILAG--VGR 390 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~--~g~ 390 (415)
..+.|++++|.+.|+.+..+.| ....--.++.+|.+.+++++|...+++.+++.|.++ ..|.....++.. ...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 4678999999999999988844 334666789999999999999999999999999844 445555555443 332
Q ss_pred ---------------hhhHHHHHHHHhhhc
Q 039757 391 ---------------YVDAERLRRVMDERN 405 (415)
Q Consensus 391 ---------------~~~A~~~~~~m~~~~ 405 (415)
..+|..-|+++++.-
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 556777777666543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.69 Score=42.83 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=98.1
Q ss_pred HHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHH
Q 039757 33 HFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNM 112 (415)
Q Consensus 33 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 112 (415)
....-+|+++.+.+..+.-. - - |. ......+.+++.+-+.|.++.|+++-.. .. .-.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~~---l---l--~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeL 327 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN---L---L--PN-IPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFEL 327 (443)
T ss_dssp HHHHHTT-HHH-----HHHH---T---G--GG---HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhh---h---c--cc-CChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHH
Confidence 34455788888777665211 0 0 11 1245578888888888988888877432 22 23455
Q ss_pred HHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHH
Q 039757 113 YVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEIT 192 (415)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 192 (415)
..+.|+++.|.++.++.. +...|..|.....+.|+++-|.+.|++...
T Consensus 328 Al~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------------------------ 375 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD------------------------------ 375 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------------------------
T ss_pred HHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------------------------
Confidence 668899999999888875 566899999999999999999999998864
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (415)
+..++-.|.-.|+.++..++.+.....|. ++....++.-.|+.++..+++.+.
T Consensus 376 ~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 FSGLLLLYSSTGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccccHHHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33444455566666666666665555531 344455556667777777766554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.86 Score=37.63 Aligned_cols=204 Identities=17% Similarity=0.056 Sum_probs=141.2
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh-hhHHHHHH-
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTSIIS- 267 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~- 267 (415)
..........+...++...+...+.........+.....+......+...+++..+.+.+.......++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 3455556666677777887777777776521234467777778888888888999999999888754332 23333333
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC--HHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD--VVVRR 345 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~ 345 (415)
.+...|+++.|...+.+... ..|....+... +......+...++.+.|...+.......++ ...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEA----------LLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHH----------HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 78899999999999999854 33420011110 111333366788999999998877766344 56777
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+...+...++++.+...+.......+.....+..+...+...|.++++...+.+.....
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888899999999999988887755556666666667777888888887766543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.51 Score=40.10 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=92.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHH
Q 039757 235 TYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGC 313 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 313 (415)
.....|+..+|..+|.......| +...--.++.+|...|+.+.|..++..+-..- ...-+.. +.+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~-l~a---------- 208 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHG-LQA---------- 208 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHH-HHH----------
Confidence 45566777777777777766533 44556667777788888888888877765431 1111111 111
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCc
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGR 390 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 390 (415)
-+..+.+.....+...+-++.... | |...-..+...+...|+.+.|.+.+-.+++.+.. +...-..++..+.-.|.
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aad-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAAD-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 233445555555555555555544 5 5666667777788888888888887777776544 66677777777777775
Q ss_pred hhhHHHHH
Q 039757 391 YVDAERLR 398 (415)
Q Consensus 391 ~~~A~~~~ 398 (415)
-+.+...+
T Consensus 288 ~Dp~~~~~ 295 (304)
T COG3118 288 ADPLVLAY 295 (304)
T ss_pred CCHHHHHH
Confidence 55544333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.43 Score=38.05 Aligned_cols=112 Identities=14% Similarity=-0.028 Sum_probs=76.2
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--C--ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC
Q 039757 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER--K--NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292 (415)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 292 (415)
....+...-...+..+.+.|++.|+.+.|.+.|.++.+.- + -...+-.+|+.....+++..+...+.+....--.+
T Consensus 27 ~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 27 KSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 3343333245667789999999999999999999988762 2 23457788899999999999999988876643233
Q ss_pred ChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 293 NRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 293 ~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
.......=+.++ -...+...+++.+|-+.|-+....
T Consensus 107 ~d~~~~nrlk~~---------~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 107 GDWERRNRLKVY---------EGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred chHHHHHHHHHH---------HHHHHHHhchHHHHHHHHHccCcC
Confidence 322222222221 222345678999999988766554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.62 Score=43.11 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcC
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 289 (415)
+...|..|.+...+.|+++-|++.|.+... |..|+-.|.-.|+.++..++.+.....|
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 566778888888888888888888877765 6677777777888777777766666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.23 Score=36.94 Aligned_cols=47 Identities=11% Similarity=0.084 Sum_probs=38.8
Q ss_pred CChhhHHHHHHHHHccCchHHHHHHHHHHHh-cCCCCChhhHHHHHHH
Q 039757 257 KNLVSWTSIISGFAMHGMGKAAVENFERMQK-VGLKPNRVTFLSVLNA 303 (415)
Q Consensus 257 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~ 303 (415)
|+..+..+++.+|+..|++..|+++++...+ .++.-+..+|..|++=
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7888899999999999999999999988765 5777777787777654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.064 Score=39.23 Aligned_cols=90 Identities=16% Similarity=0.030 Sum_probs=74.1
Q ss_pred HhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC----CccHHHHHHHHHhcCch
Q 039757 317 MLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN----GGDYVLMYNILAGVGRY 391 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 391 (415)
++...|+++.|++.|......-| ....|+.=.+++.-.|+.++|+.=+++..+..-+. ...|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 46789999999999987665533 67789999999999999999999999999877553 24566677788889999
Q ss_pred hhHHHHHHHHhhhcc
Q 039757 392 VDAERLRRVMDERNA 406 (415)
Q Consensus 392 ~~A~~~~~~m~~~~~ 406 (415)
+.|..=|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999988877664
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.39 Score=37.29 Aligned_cols=119 Identities=17% Similarity=0.122 Sum_probs=52.6
Q ss_pred HhcCCHHHHHHHHHHhhhhCCChhhHHHH-----HHHHHccCchHHHHHHHHHHHhcCCCCChh-hHHHHHHHHccCCcc
Q 039757 237 AKCGCIFSALKLFEDISVERKNLVSWTSI-----ISGFAMHGMGKAAVENFERMQKVGLKPNRV-TFLSVLNACSHGGLH 310 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~ 310 (415)
...++.++|..-|.++.+. +.-.|-.| .....+.|+...|...|++.-...-.|-.. -...|-.+
T Consensus 69 A~~~k~d~Alaaf~~lekt--g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa------- 139 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT--GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA------- 139 (221)
T ss_pred HHcCCchHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH-------
Confidence 3445555566666555553 22222222 123344555555666665555443333222 11111111
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC-Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE-IT-DVVVRRILLGACSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 369 (415)
..+...|.++....-.+.+... .| ....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 140 -----~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 140 -----YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred -----HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1234455555555555444333 22 222334444444555566666655555554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.3 Score=37.77 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=93.2
Q ss_pred HHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccC
Q 039757 110 VNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAST 186 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~ 186 (415)
.......|+..+|..+|+.... .+...--.++.+|...|+.+.|..++..+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--------------------- 199 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--------------------- 199 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch---------------------
Confidence 3456688999999999888764 3455677888999999999999999999874321
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CChhhHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KNLVSWT 263 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~ 263 (415)
.........-+..+.+.........+-+..-. .|.|...-..+...+...|+.+.|.+.+-.+.... .|...-.
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 00111111122233333333333333333333 46677888888888888999998888877776652 3445566
Q ss_pred HHHHHHHccCchHHHH
Q 039757 264 SIISGFAMHGMGKAAV 279 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~ 279 (415)
.|+..+.--|.-+.+.
T Consensus 277 ~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 277 TLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHHHHhcCCCCHHH
Confidence 6777666666444333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1 Score=36.48 Aligned_cols=179 Identities=13% Similarity=0.026 Sum_probs=93.2
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHH
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
|-...|+--|.+.... .|.-+.+||-|.--+...|+++.|.+.|+...+..|+ ..+.-.-.-++--.|+++-|.+-+
T Consensus 79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 3334444444444443 5767888888888888899999999999988885442 122222222334467888887766
Q ss_pred HHHHhcC-CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH-HHhcCCCCCcCHHHHHHHHHHHhhcCChHHH
Q 039757 283 ERMQKVG-LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK-IALGIPSEITDVVVRRILLGACSFHGNVEMG 360 (415)
Q Consensus 283 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 360 (415)
-..-+.. -.|=...|..+ -.+.-+..+|.. +.++.... +..-|...|-.+.- |+.. .
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl-----------------~E~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yL-gkiS-~ 215 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYL-----------------NEQKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYL-GKIS-E 215 (297)
T ss_pred HHHHhcCCCChHHHHHHHH-----------------HHhhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHH-hhcc-H
Confidence 6655432 11211111111 112223444433 33344333 44444433333221 1211 1
Q ss_pred HHHHHHHHHcccC-------CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 361 ERVTRKVLEMERG-------NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 361 ~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
..+++++...... -.++|..|+.-+...|..++|..+|+-.+..+
T Consensus 216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2233333332222 13577777777777888888877777665544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.8 Score=41.04 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcCCChHH--HHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchh
Q 039757 27 LFNTLLHFYSLADSPKK--AFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~--A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 104 (415)
-++..-++|.+-.+..- -+.-++++. +.|-. | +.. .+...|+-.|++.+|-++|.+ .|..
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k---~rge~--P---~~i---LlA~~~Ay~gKF~EAAklFk~---~G~e---- 661 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERK---KRGET--P---NDL---LLADVFAYQGKFHEAAKLFKR---SGHE---- 661 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHH---hcCCC--c---hHH---HHHHHHHhhhhHHHHHHHHHH---cCch----
Confidence 34555566666555332 222233444 55555 6 544 345567778888888888864 3432
Q ss_pred hHHHHHHHHHcCCChhHHHHHhc
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFD 127 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~ 127 (415)
|..+..|.....+|.|.+++.
T Consensus 662 --nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 662 --NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred --hhHHHHHHHHHHHHHHHHHhh
Confidence 123445555555555555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.27 Score=41.25 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcC-CCC-c
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQS-H 102 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~-~ 102 (415)
...|+.-+..+. .|++..|...|...++.+..+.. ....+--|..++...|+++.|..+|..+.+.- -.| -
T Consensus 142 ~~~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 142 TKLYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTY------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred hHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcc------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 346888887765 67799999999999943333322 55677778999999999999999999987642 112 2
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE 131 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 131 (415)
+..+--|..+..+.|+.++|..+|+++.+
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35566677888899999999999999876
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.91 Score=34.54 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=41.6
Q ss_pred hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCc
Q 039757 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 274 (415)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 274 (415)
.++..+...+.......+++.+...+ +.+...++.++..|++.+ .++..+.++. . .+.......+..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~--~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN--K--SNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c--cccCCHHHHHHHHHHcCc
Confidence 34444445555666666666666554 235556666666665542 2233333331 1 223333345555555555
Q ss_pred hHHHHHHHHHH
Q 039757 275 GKAAVENFERM 285 (415)
Q Consensus 275 ~~~A~~~~~~m 285 (415)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.58 Score=34.44 Aligned_cols=90 Identities=14% Similarity=0.044 Sum_probs=73.8
Q ss_pred HHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCCh----hhHHHHHHHHHcc
Q 039757 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNL----VSWTSIISGFAMH 272 (415)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~li~~~~~~ 272 (415)
-+++..|+.+.|.+.|.+.... .|..+..||.-..++--.|+.++|.+=+++..+. ++.. ..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3567899999999999999887 6779999999999999999999999999998876 2322 2344455567788
Q ss_pred CchHHHHHHHHHHHhcC
Q 039757 273 GMGKAAVENFERMQKVG 289 (415)
Q Consensus 273 ~~~~~A~~~~~~m~~~g 289 (415)
|+-+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999998888877765
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.058 Score=41.39 Aligned_cols=125 Identities=11% Similarity=0.068 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHH
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 152 (415)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35778888899999999999999877667788899999999999999999999885443 333456666667777777
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc----CCCchHHHHhHHHHHhhcCC
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS----TEPSEITILAVLPAIWQNGA 205 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~----~~~~~~~~~~ll~~~~~~~~ 205 (415)
|.-++.++...+. .+..+...++++.|. ...+...|..++..|...+.
T Consensus 89 a~~Ly~~~~~~~~-----al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDE-----ALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTT-----CSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHH-----HHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 7777776653111 000122233344443 44455666666666655443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=3.5 Score=40.37 Aligned_cols=283 Identities=9% Similarity=-0.038 Sum_probs=150.9
Q ss_pred HHHHHHHHcC-CCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC---CCC
Q 039757 89 QLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRN 164 (415)
Q Consensus 89 ~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~ 164 (415)
++-..+.+.. .+.....-...+..+.+.+++....+++..- ..+...-.....+....|+.++|....+.+= ...
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~ 162 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL 162 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Confidence 4444444433 2333344445556677888898888844333 2345555566777888898777766655542 344
Q ss_pred hhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039757 165 VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244 (415)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (415)
...++.+++.+.+.|.. .+...+.- +......|+...|..+...+- +........++..+. +...
T Consensus 163 p~~cd~l~~~~~~~g~l------t~~d~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~---~p~~ 227 (644)
T PRK11619 163 PNACDKLFSVWQQSGKQ------DPLAYLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQN---DPNT 227 (644)
T ss_pred ChHHHHHHHHHHHcCCC------CHHHHHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHH---CHHH
Confidence 66788888888876642 22233333 333445666666666665541 101222333333332 2333
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHH--ccCchHHHHHHHHHHHhc-CCCCChhhHHHHHHHHccCCcchHHHHHHhHhc
Q 039757 245 ALKLFEDISVERKNLVSWTSIISGFA--MHGMGKAAVENFERMQKV-GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRA 321 (415)
Q Consensus 245 A~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~ 321 (415)
+..++.... ++...-..++.++. ...+.+.|..++...... ++.++... .+-. .+.......
T Consensus 228 ~~~~~~~~~---~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~--~~~~----------~lA~~~a~~ 292 (644)
T PRK11619 228 VETFARTTG---PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQ--ELRD----------IVAWRLMGN 292 (644)
T ss_pred HHHHhhccC---CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHH--HHHH----------HHHHHHHhc
Confidence 333332221 22211111222222 244668888888876443 22222221 1111 122223333
Q ss_pred CCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHH
Q 039757 322 GRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 401 (415)
+..++|...+........+......-++.-...++++.+...+..|-........-..=+++++...|+.++|..+|++.
T Consensus 293 ~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 293 DVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred cCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22566777776654432344444555555557788888888887775544444555666777777788888888888776
Q ss_pred h
Q 039757 402 D 402 (415)
Q Consensus 402 ~ 402 (415)
.
T Consensus 373 a 373 (644)
T PRK11619 373 M 373 (644)
T ss_pred h
Confidence 4
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.9 Score=39.27 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=58.7
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHH---HHHhcCCCCCcCHHHHHHH-
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAE---KIALGIPSEITDVVVRRIL- 347 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~p~~~~~~~l- 347 (415)
.|+...|..+++.....- |+...... .-+....+.|..+.+. .++....+..-+..+...+
T Consensus 379 ~~n~~~A~~~lq~i~~e~--pg~v~~~l-------------~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~ 443 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY--PGLVEVVL-------------RKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLY 443 (577)
T ss_pred hccHHHHHHHHHHHHhhC--CchhhhHH-------------HHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHH
Confidence 457777777777776652 54433211 1233455667777766 4444433321122222222
Q ss_pred ---HH-HHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 348 ---LG-ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 348 ---~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
.+ .+.-.++.+.|..++.++.+..+++...|..+++.....+
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 11 1234567888888888888888887777777777765554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.9 Score=37.42 Aligned_cols=100 Identities=10% Similarity=-0.107 Sum_probs=65.4
Q ss_pred HHHHHHhHhcCCHH---HHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh
Q 039757 312 GCLVDMLGRAGRLE---QAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387 (415)
Q Consensus 312 ~~li~~~~~~g~~~---~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (415)
..++.+|...+..+ +|.++++.+....|+ +.++..-+..+.+.++.+.+.+.+.+|...-.-....+...+..+..
T Consensus 88 ~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~ 167 (278)
T PF08631_consen 88 RLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQ 167 (278)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 34777888877655 455566666555555 44555667777778999999999999998766444555555555422
Q ss_pred --cCchhhHHHHHHHHhhhccccCCC
Q 039757 388 --VGRYVDAERLRRVMDERNALKFPG 411 (415)
Q Consensus 388 --~g~~~~A~~~~~~m~~~~~~~~~~ 411 (415)
......|...+.++....+.+.+.
T Consensus 168 l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 168 LAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 233456777777777666665544
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.079 Score=30.89 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHH
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLI 75 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~ 75 (415)
.+|..+...|.+.|++++|.++|+++. ...+. |...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l---~~~P~------~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRAL---ALDPD------DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCcC------CHHHHHHhh
Confidence 467889999999999999999999999 66655 666665553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.12 Score=43.88 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
+..++..+...|+.+.+.+.++++....|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555555555555555555554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.5 Score=39.63 Aligned_cols=227 Identities=11% Similarity=0.044 Sum_probs=130.9
Q ss_pred HHhhCCHHHHHHHHhhCCC---CC------hhHHHHHHHHHHhccCCCCcc-------CCCchHHHHhHHHHH--hhcCC
Q 039757 144 LVKWGELEYARSLFEEMPC---RN------VVSWTGILDGYTRMNRSNGAS-------TEPSEITILAVLPAI--WQNGA 205 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~---~~------~~~~~~li~~~~~~~~~~~a~-------~~~~~~~~~~ll~~~--~~~~~ 205 (415)
+-+.+++.+|.++|.++-+ .+ .+.-+.++++|...+--.-+. ..| ...|..+..++ .+.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhh
Confidence 3477889999999988763 11 122445666665432111000 222 34455555543 56788
Q ss_pred hhHHHHHHhhhhhc--CCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh------CCChhhHHHHH
Q 039757 206 VRNCQLIHGYGEKR--GFNAF-----------DIRVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLVSWTSII 266 (415)
Q Consensus 206 ~~~a~~~~~~~~~~--~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~li 266 (415)
+++|.+.+...... +-.++ +...-+..++++...|++.+++.+++++.+. .-+..+||.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99998888877765 33332 2222356678889999999999999998776 25788888866
Q ss_pred HHHHccC---------------chHHHHHHHHHHHhc------CCCCChhhHHHHHHHHccCCc----------------
Q 039757 267 SGFAMHG---------------MGKAAVENFERMQKV------GLKPNRVTFLSVLNACSHGGL---------------- 309 (415)
Q Consensus 267 ~~~~~~~---------------~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~---------------- 309 (415)
-.+.++= -++.+.-..++|... .+.|....+..++....-...
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 5555431 234445555555432 345666666665554433222
Q ss_pred ----chHHH----HHHhHhcCCHHHHHHHHhcCCCC------CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 310 ----HYGCL----VDMLGRAGRLEQAEKIALGIPSE------ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 310 ----~~~~l----i~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.|+.+ +..+.. +.+++..+-+.+... ..-..++..++....+.++...|.+.+..+...+|.
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 22222 222222 334443333322211 113446777777777888888888888877776665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.39 Score=41.90 Aligned_cols=229 Identities=12% Similarity=-0.008 Sum_probs=130.4
Q ss_pred cCCChhHHHHHhcccCC------CchhhHHHHHHHHHhhCCHHHHHHHH-hhCCCCChhHHHHHHHHHHhccCCCCccCC
Q 039757 115 SLGFLKDSSKLFDELPE------RNLVTWNVMITGLVKWGELEYARSLF-EEMPCRNVVSWTGILDGYTRMNRSNGASTE 187 (415)
Q Consensus 115 ~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~~~~~li~~~~~~~~~~~a~~~ 187 (415)
...+.++|+..+..... .-..++..+..+.++.|.+++++..- ..|.- .....+ ..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~------------a~~~~d-----s~ 80 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT------------ARELED-----SD 80 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH------------HHHHHH-----HH
Confidence 55667777766655443 12345666777777777777665432 11110 000000 01
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CC--
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF---DIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RK-- 257 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-- 257 (415)
..-..|..+.+++.+.-++.+++.+-+.-......-+ .....-++..++...+.++++.+.|+....- .|
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L 160 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML 160 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee
Confidence 1122344555555555566666665555444321111 1234445777888888999999999987654 12
Q ss_pred ChhhHHHHHHHHHccCchHHHHHHHHHHHh----cCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhc
Q 039757 258 NLVSWTSIISGFAMHGMGKAAVENFERMQK----VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALG 333 (415)
Q Consensus 258 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (415)
....|-.|-..|.+..++++|.-+..+..+ .|+.--...|..+.-. .+.-++...|++..|.+.-++
T Consensus 161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly---------hmaValR~~G~LgdA~e~C~E 231 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY---------HMAVALRLLGRLGDAMECCEE 231 (518)
T ss_pred eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH---------HHHHHHHHhcccccHHHHHHH
Confidence 235688999999999999998876655433 3333333334433322 145566777777766666554
Q ss_pred CCCC---CcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 039757 334 IPSE---ITD----VVVRRILLGACSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 334 ~~~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 369 (415)
..+. .-| ......+...|...|+.+.|..-++.+..
T Consensus 232 a~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 232 AMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 3322 122 33445667778888888888777776543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.34 Score=44.23 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=32.3
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc---CHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT---DVVVRRILLGACSFHGNVEMGERVTRKVL 368 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 368 (415)
|.....+.|+.++|.+.++++.+..| .......|+.++...+.+.++..++.+.-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34445566666666666666654323 22255566666666666666666666653
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.53 Score=42.84 Aligned_cols=141 Identities=10% Similarity=0.025 Sum_probs=92.0
Q ss_pred hhH--HHHHHHHHcc-----CchHHHHHHHHHHH-hcCCCCChhhHHHHHHHHccCCcchHHHHHHhH-hcCCHHHHHHH
Q 039757 260 VSW--TSIISGFAMH-----GMGKAAVENFERMQ-KVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLG-RAGRLEQAEKI 330 (415)
Q Consensus 260 ~~~--~~li~~~~~~-----~~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~-~~g~~~~A~~~ 330 (415)
..| ..++.+.... ...+.|+.+|.+.. ...+.|+...-...+.-|. +.....++. ......+|.++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h-----~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECH-----MSLALHGKSELELAAQKALEL 326 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHH-----HHHHHhcCCCchHHHHHHHHH
Confidence 445 5555554431 24567888888887 2235666554443333321 111122222 23445566666
Q ss_pred HhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 331 ALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 331 ~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
-+...+. .-|......+..+....++++.|...|++....+|....+|......+.-.|+.++|.+.+++..+..
T Consensus 327 A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 327 LDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 6655554 34677777777777777889999999999999999988889888888888999999999988855443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.22 Score=41.79 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=79.7
Q ss_pred CcchHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC-------------
Q 039757 21 LLHHTLLFNTLLHFYSLA-----DSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS------------- 82 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~------------- 82 (415)
-+.|-.+|-..+..+... +.++=....++.|. ..|+. . |..+|+.|+..+-+..
T Consensus 63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~---eyGVe--r---Dl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK---EYGVE--R---DLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH---Hhcch--h---hHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 356778888888887654 45555666677787 99999 8 9999999998865543
Q ss_pred ---CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC-hhHHHHHhcccCC
Q 039757 83 ---YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDELPE 131 (415)
Q Consensus 83 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~ 131 (415)
+-+=+++++++|...|+.||..+-..|++++.+.+- ..+..+++--|++
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 224578999999999999999999999999999886 4555566555653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.4 Score=35.15 Aligned_cols=93 Identities=17% Similarity=-0.002 Sum_probs=53.1
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----
Q 039757 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE----- 337 (415)
Q Consensus 263 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 337 (415)
...-..+.+..++++|-..+.+-... .-...+|+..-. .|-..|..|.-..++..|.+.++.-...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~--~~~~~~y~~~~k-------~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~ 224 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVA--ADKCDAYNSQCK-------AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK 224 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhH--HHHHhhcccHHH-------HHHHHHHHHhhHHHHHHHHHHhcchhcCccccC
Confidence 33445566666666665555432211 111112222111 2334666677788999999999874332
Q ss_pred CcCHHHHHHHHHHHhhcCChHHHHHHHH
Q 039757 338 ITDVVVRRILLGACSFHGNVEMGERVTR 365 (415)
Q Consensus 338 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 365 (415)
.-+..+...|+.+| ..||.+.+..++.
T Consensus 225 sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 225 SEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 23566888888887 4578777766554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.7 Score=33.51 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=9.5
Q ss_pred hHhcCCHHHHHHHHhcCCCC
Q 039757 318 LGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~ 337 (415)
+...|++++|.++|+++...
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 34444555555555544444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.52 Score=40.24 Aligned_cols=75 Identities=15% Similarity=0.298 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh-----cCCCCChhhHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK-----VGLKPNRVTFL 298 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~ 298 (415)
-..++..++..+...|+.+.+.+.++++....| +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 445667788888888889999998888887754 777899999999999999999888888765 58888888766
Q ss_pred H
Q 039757 299 S 299 (415)
Q Consensus 299 ~ 299 (415)
.
T Consensus 232 ~ 232 (280)
T COG3629 232 L 232 (280)
T ss_pred H
Confidence 5
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.2 Score=37.25 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcC----CHHHHHHHHhcCCCC-----CcCHHHHH
Q 039757 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG----RLEQAEKIALGIPSE-----ITDVVVRR 345 (415)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~-----~p~~~~~~ 345 (415)
+++...+++.|.+.|++-+..+|-... ++....... ...+|..+|+.|++. .++..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~------------~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a 145 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAAL------------IILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFA 145 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHH------------HHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHH
Confidence 345678899999999999887765532 122222222 355788899999988 44555666
Q ss_pred HHHHHHhhcCC----hHHHHHHHHHHHHcccCCCccHHHHHHHHH---h--cCchhhHHHHHHHHhhhccccCC
Q 039757 346 ILLGACSFHGN----VEMGERVTRKVLEMERGNGGDYVLMYNILA---G--VGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 346 ~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~--~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
.|+.. ..++ .+.++.+++.+.+.+.........|...+. . ......+.++++.+.+.|++..+
T Consensus 146 ~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 146 ALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred HHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 66544 3333 356778888888877664433333333332 1 12255788999999999887543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.21 E-value=7.6 Score=39.86 Aligned_cols=153 Identities=17% Similarity=0.121 Sum_probs=102.9
Q ss_pred hCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc--CCCchHHHHhHHHHH----hhcCChhHHHHHHhhhhhcC
Q 039757 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS--TEPSEITILAVLPAI----WQNGAVRNCQLIHGYGEKRG 220 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~--~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~ 220 (415)
.++++.|+.-+.++. ...|.-.++.-.+.|.+.+|+ ..|+...+..+..+| ...+.+++|--.|+..-+.
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl- 968 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL- 968 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-
Confidence 467777777777775 334445556666677777777 677777766655544 5567777777777655443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh--hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL--VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
.-.+.+|..+|+|.+|..+-.++... .+. .+-..|+..+...+++-+|-+++.+-... |..
T Consensus 969 ---------ekAl~a~~~~~dWr~~l~~a~ql~~~-~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~~---- 1031 (1265)
T KOG1920|consen 969 ---------EKALKAYKECGDWREALSLAAQLSEG-KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PEE---- 1031 (1265)
T ss_pred ---------HHHHHHHHHhccHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HHH----
Confidence 23567788888888888888877652 121 22356777788888888888887776542 322
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCC
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIP 335 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (415)
.+..|++...+++|.++.....
T Consensus 1032 ---------------av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1032 ---------------AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ---------------HHHHHhhHhHHHHHHHHHHhcc
Confidence 4445788888999988876555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.12 E-value=4.2 Score=36.55 Aligned_cols=181 Identities=10% Similarity=0.028 Sum_probs=105.7
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh------CCChhhHHHHHHHHH
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLVSWTSIISGFA 270 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~li~~~~ 270 (415)
..+..+.|+++............. + +...+.++... +.|+++++....+++... ......|........
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~--~-~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDS--P-EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCC--h-hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 456778888888666666555431 2 45555555433 788999888888877665 111122222222222
Q ss_pred cc---CchHHHHHHHHHH--------------Hh--cCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 271 MH---GMGKAAVENFERM--------------QK--VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 271 ~~---~~~~~A~~~~~~m--------------~~--~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
+. .+.+++..+.... .. .+..++..++..++.-- ..++
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R-----------------------~~~l 136 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLR-----------------------RLVL 136 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-----------------------HHHH
Confidence 22 1222333222111 10 12233333333322210 0011
Q ss_pred hcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC----CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG----NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 332 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.+........+|..+...+.+.|+++.|...+.++...++. .+......+..+...|+..+|...+++.....
T Consensus 137 ~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 137 SLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred hcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 111111235568899999999999999999999999886633 45677778889999999999999998888733
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.00 E-value=7.1 Score=38.76 Aligned_cols=248 Identities=16% Similarity=0.065 Sum_probs=135.1
Q ss_pred HHHHHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCccCCCchHHHH----hHHHH--HhhcCChhHHHHH
Q 039757 141 ITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGASTEPSEITIL----AVLPA--IWQNGAVRNCQLI 212 (415)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~ll~~--~~~~~~~~~a~~~ 212 (415)
|...++.|+++.|-+++++... .+. .--.+|.++.+ ..|++...+ .++.+ .....++.+|..+
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~-~~lsll~~~~~--------~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~l 437 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNG-SELSLLLAWLK--------ALPAELLASTPRLVLLQAWLLASQHRLAEAETL 437 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcc-cchHHHHHHHH--------hCCHHHHhhCchHHHHHHHHHHHccChHHHHHH
Confidence 3445567777777777776621 000 01112222222 234433322 22222 3557788888888
Q ss_pred HhhhhhcCCCCC---C---HHHHHHHH-HHHHhcCCHHHHHHHHHHhhhh------CCChhhHHHHHHHHHccCchHHHH
Q 039757 213 HGYGEKRGFNAF---D---IRVSNCLI-DTYAKCGCIFSALKLFEDISVE------RKNLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 213 ~~~~~~~~~~~~---~---~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~ 279 (415)
..++...-..|. . ...++.|- ......|++++|.++-+..... .+.+..+..+..+..-.|++++|.
T Consensus 438 i~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al 517 (894)
T COG2909 438 IARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQAL 517 (894)
T ss_pred HHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHH
Confidence 888776522221 1 11233332 2344568999999998887776 234566777888888899999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHH--HHHHhcCCCC----C----cCHHHHHHHHH
Q 039757 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA--EKIALGIPSE----I----TDVVVRRILLG 349 (415)
Q Consensus 280 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~~~~~----~----p~~~~~~~l~~ 349 (415)
.+.++..+.--+-+...+...... .-...+...|+...| +..|...... . +-..++..+..
T Consensus 518 ~~~~~a~~~a~~~~~~~l~~~~~~---------~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~ 588 (894)
T COG2909 518 ALMQQAEQMARQHDVYHLALWSLL---------QQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLR 588 (894)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Confidence 988887664333444444332211 012234556633333 2222222111 1 23345555666
Q ss_pred HHhhcCChHHHHHHHHHHHHcc----cCCC---ccHHHHHHHHHhcCchhhHHHHHHHHhhhccccC
Q 039757 350 ACSFHGNVEMGERVTRKVLEME----RGNG---GDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409 (415)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 409 (415)
++.+ .+.+..-.....+.+ +.+. ..+..|+..+...|+.++|...++++......+.
T Consensus 589 ~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 589 AWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 6655 333333333333322 2211 2334678888899999999999999987665553
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.2 Score=35.43 Aligned_cols=94 Identities=12% Similarity=0.008 Sum_probs=56.0
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHH
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRR 345 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 345 (415)
...+...|++++|+..++..... |....+..++.- .|.......|.+|+|+..++......-......
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l---------RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~e 163 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL---------RLARVQLQQKKADAALKTLDTIKEESWAAIVAE 163 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH---------HHHHHHHHhhhHHHHHHHHhccccccHHHHHHH
Confidence 34556677777777777766542 555555555443 255666677777777777776665411122223
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
.-...+...|+-++|..-|++..+.+
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33445667777777777777776665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.87 E-value=4 Score=35.40 Aligned_cols=103 Identities=8% Similarity=-0.104 Sum_probs=66.7
Q ss_pred HHHHhHHHHHhhcCCh---hHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHH
Q 039757 191 ITILAVLPAIWQNGAV---RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSII 266 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 266 (415)
.++..+..++...+.. ++|..+++.+.... |..+.++..-+..+.+.++.+.+.+.+.+|...-+ ....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 3455566666655544 45666777776663 33456666667777778999999999999988632 344566666
Q ss_pred HHHHc--cCchHHHHHHHHHHHhcCCCCChh
Q 039757 267 SGFAM--HGMGKAAVENFERMQKVGLKPNRV 295 (415)
Q Consensus 267 ~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~ 295 (415)
..+.. ......|...+..+....+.|...
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 55522 233456777777777665666664
|
It is also involved in sporulation []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.9 Score=36.70 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
+++...+.|...|.+.+|.++.++....+|-+...+..|+..|...|+--.|..-++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4555667889999999999999999999999999999999999999998777777776643
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.83 E-value=1.5 Score=36.82 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=76.0
Q ss_pred CChhHHHHHhcccCC--C-----chhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCccCC
Q 039757 117 GFLKDSSKLFDELPE--R-----NLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGASTE 187 (415)
Q Consensus 117 g~~~~a~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~ 187 (415)
.++++|+.-|+...+ + .....-.+|+.+.+.|++++....+.++.. .+.+| ..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT------------------rN 102 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT------------------RN 102 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh------------------cc
Confidence 356666666665543 1 223444566777777777777777776641 11111 12
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----C--
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----R-- 256 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-- 256 (415)
.++...++++.-.+...+.+.-..+|+.-.+. .-...-..+-+-|...|...+.+.+..++++++... +
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 23334444444444444433333333222211 000001122344566666667777777777666544 1
Q ss_pred ---C---ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 257 ---K---NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 257 ---~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
. -...|..=|+.|....+-.+-..+|++...
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 1 123466667777777666666666666543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=3.2 Score=34.08 Aligned_cols=187 Identities=16% Similarity=0.025 Sum_probs=135.9
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--h-CCChhhHHHHHHHHHccCchHHHHH
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV--E-RKNLVSWTSIISGFAMHGMGKAAVE 280 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~~li~~~~~~~~~~~A~~ 280 (415)
+....+...+...............+......+...+++..+...+..... . ......+......+...++++.+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 444555555555555422111357778888899999999999999988774 2 3455667788888888889999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHH-HhHhcCCHHHHHHHHhcCCCCCc----CHHHHHHHHHHHhhcC
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVD-MLGRAGRLEQAEKIALGIPSEIT----DVVVRRILLGACSFHG 355 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~ 355 (415)
.+.........+...... ... .+...|+++.|...++......| ....+......+...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 117 LLEKALALDPDPDLAEAL---------------LALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred HHHHHHcCCCCcchHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 999988754443111111 222 58899999999999987744323 2233444444467789
Q ss_pred ChHHHHHHHHHHHHcccC-CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 356 NVEMGERVTRKVLEMERG-NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.+.+...+.......+. ....+..+...+...++++.|...+.......
T Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999999999888 68889999999999999999999998876644
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.80 E-value=5.5 Score=36.81 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=64.7
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCH
Q 039757 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDV 341 (415)
Q Consensus 263 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~ 341 (415)
..+..++.+.|+.++|.+.+++|.+. .|.....+. ...|+..+...+++.++..++.+..+. .|..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke--~p~~~~l~I-----------renLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKE--FPNLDNLNI-----------RENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhh--CCccchhhH-----------HHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 44667777889999999999999874 244333332 334788899999999999999887643 3433
Q ss_pred H--HHHHHHHHHhhcCC---------------hHHHHHHHHHHHHcccC
Q 039757 342 V--VRRILLGACSFHGN---------------VEMGERVTRKVLEMERG 373 (415)
Q Consensus 342 ~--~~~~l~~~~~~~~~---------------~~~a~~~~~~~~~~~~~ 373 (415)
. .|+..+-.....++ -..|.+.+.++.+.+|.
T Consensus 330 Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 330 ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 3 55554433222222 12356778888877765
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=5.6 Score=36.56 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=84.9
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVEN 281 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~ 281 (415)
..+..+|.+.-+..++. .|.|+.....+..+....++.+.|..+|++.....|| ..+|....-.+.-+|+.++|...
T Consensus 317 ~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34556677777777776 5779999999999889999999999999999888775 45566666677788999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcC
Q 039757 282 FERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 282 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (415)
+++..+. .|....-.. ++- .++.|+..+ +++|.+++-+-
T Consensus 395 i~~alrL--sP~~~~~~~-~~~----------~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 395 IDKSLQL--EPRRRKAVV-IKE----------CVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHhcc--CchhhHHHH-HHH----------HHHHHcCCc-hhhhHHHHhhc
Confidence 9996653 555544332 221 455666654 78888887543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.32 Score=38.79 Aligned_cols=92 Identities=14% Similarity=-0.007 Sum_probs=67.3
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC--Cc--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHH----H
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE--IT--DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYV----L 380 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~----~ 380 (415)
+..+.+.|++.|+.+.|.+.|.++.+. .| -...+-.+|+.....+++..+...+.++...... +...-+ .
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 445888999999999999999998876 22 3346778899999999999999999888765433 222111 2
Q ss_pred HHHHHHhcCchhhHHHHHHHHh
Q 039757 381 MYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 381 l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
-+-.+...|+|.+|-+.|-+..
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHhchHHHHHHHHHccC
Confidence 2223456889999998885543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.55 E-value=7.7 Score=37.69 Aligned_cols=360 Identities=11% Similarity=0.046 Sum_probs=190.4
Q ss_pred HhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHH--------HHHHhhcCCCCCCCCCCchhHHHHHHH------HHh
Q 039757 15 LLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQ--------LQQIYTHSHSPLRPLFDSFTYSFLIRT------CVT 80 (415)
Q Consensus 15 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~~~p~~~~~~~~~~l~~~------~~~ 80 (415)
+.+.|.-.|-...|.+.=..=-+++..++.+..+.+ .++.....+. +..-..|+++ +.+
T Consensus 329 IF~igS~ePgA~L~eA~q~~e~~S~kade~L~~~~e~L~~aV~~CI~aA~~ef~-------pe~QK~LL~AAsfGk~~l~ 401 (829)
T KOG2280|consen 329 IFKIGSTEPGALLYEAFQKMEQKSGKADEYLSEIREDLYKAVDDCIEAACDEFQ-------PEEQKSLLRAASFGKASLR 401 (829)
T ss_pred HhhcCCCCchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhccC-------HHHHHHHHHHHhhcccccc
Confidence 445566667777777776666666666666555542 1110011222 2344444443 233
Q ss_pred cCCCchHHHHHHHH--------HHcCCCCchhhHHH-----HHHHHHcCCChhHHHHHhcccCCCc---hhhHHHHHHHH
Q 039757 81 LSYPNLGTQLHAVI--------SKVGFQSHVYVNTA-----LVNMYVSLGFLKDSSKLFDELPERN---LVTWNVMITGL 144 (415)
Q Consensus 81 ~~~~~~a~~~~~~~--------~~~g~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~ 144 (415)
..++++-..+-..+ ...|++.+..-|.. +|+-+...+.+..|.++-+.+..|- ...|.....-+
T Consensus 402 ~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~k 481 (829)
T KOG2280|consen 402 TPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRK 481 (829)
T ss_pred cCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHH
Confidence 34555444433332 23466666655544 4566777788899998888877654 44555555556
Q ss_pred HhhC---CHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCcc----CCCc----------hHHHHhHHHHHhhcCC
Q 039757 145 VKWG---ELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGAS----TEPS----------EITILAVLPAIWQNGA 205 (415)
Q Consensus 145 ~~~g---~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~----~~~~----------~~~~~~ll~~~~~~~~ 205 (415)
.+.. +-+-+..+=+++.. ....+|..+.+--...|+.+-|. ..|+ -..+...+.-+...|+
T Consensus 482 I~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d 561 (829)
T KOG2280|consen 482 IKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGD 561 (829)
T ss_pred HhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCC
Confidence 5552 22233333344443 34456766666666677766665 2222 2234445555666777
Q ss_pred hhHHHHHHhhhhhcC----------CCCCCHHHHHHHHH--------HHHhcCCHHHHHHHHH--Hhhhh---CCChhhH
Q 039757 206 VRNCQLIHGYGEKRG----------FNAFDIRVSNCLID--------TYAKCGCIFSALKLFE--DISVE---RKNLVSW 262 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~----------~~~~~~~~~~~li~--------~~~~~g~~~~A~~~~~--~~~~~---~~~~~~~ 262 (415)
.+....++-.+...- ..|.....|.-+++ .+-..++-..+..-|. ..... .+-....
T Consensus 562 ~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l 641 (829)
T KOG2280|consen 562 TDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL 641 (829)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH
Confidence 777766665555431 01112222221111 0000111111111110 00000 0000111
Q ss_pred HHHHHHHHccCchH---HH-------HHHHHHHHh-cCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 263 TSIISGFAMHGMGK---AA-------VENFERMQK-VGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 263 ~~li~~~~~~~~~~---~A-------~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
......+.+..... +| +.+.+.+.. .|......+. +.-+.-+...|+..+|.++-
T Consensus 642 k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl--------------~dTv~~li~~g~~k~a~ql~ 707 (829)
T KOG2280|consen 642 KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSL--------------HDTVTTLILIGQNKRAEQLK 707 (829)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcH--------------HHHHHHHHHccchHHHHHHH
Confidence 12223333332211 11 112222221 1222233333 33455577889999999999
Q ss_pred hcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 332 LGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 332 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
++.+- ||-..|-.-+.++...+++++-+++-+.. .++.-|.-.+.+|.+.|+.+||..++.+..
T Consensus 708 ~~Fki--pdKr~~wLk~~aLa~~~kweeLekfAksk-----ksPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 708 SDFKI--PDKRLWWLKLTALADIKKWEELEKFAKSK-----KSPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HhcCC--cchhhHHHHHHHHHhhhhHHHHHHHHhcc-----CCCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 88875 69999999999999999999877665543 236788899999999999999999986654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.26 Score=26.50 Aligned_cols=29 Identities=28% Similarity=0.137 Sum_probs=14.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
|..+...+...|++++|++.|++..+..|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 44445555555555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.16 Score=28.06 Aligned_cols=26 Identities=15% Similarity=-0.001 Sum_probs=19.7
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 377 DYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 377 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+|..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888744
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.12 Score=28.11 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHH
Q 039757 222 NAFDIRVSNCLIDTYAKCGCIFSAL 246 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~ 246 (415)
.|.+...|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 5667777888888888888777775
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.31 E-value=2.8 Score=31.88 Aligned_cols=52 Identities=6% Similarity=-0.151 Sum_probs=26.5
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 256 (415)
..+.+.++.++..+.-. .|.....-..-...+...|+|++|.++|+++.+..
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 55566666666555554 23222222222333555666666666666665543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.24 E-value=2 Score=40.37 Aligned_cols=152 Identities=14% Similarity=0.037 Sum_probs=103.4
Q ss_pred HhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc-CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC
Q 039757 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (415)
.-.|+++.|..++-.+.+ ..-+.+...+.+.|-.++|+ ..+|..... ....+.|+++.|.++..+..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s~D~d~rF---elal~lgrl~iA~~la~e~~------ 664 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELSTDPDQRF---ELALKLGRLDIAFDLAVEAN------ 664 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcCCChhhhh---hhhhhcCcHHHHHHHHHhhc------
Confidence 446777777776666653 23455666677777777776 233332211 22245788888877765432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
+..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+....+-....+.|. -|. .|.
T Consensus 665 -s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~-AF~----- 729 (794)
T KOG0276|consen 665 -SEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL-AFL----- 729 (794)
T ss_pred -chHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cch-HHH-----
Confidence 667799999999999999999999987765 77788888888887766666566555543 222 222
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (415)
+|...|+++++.+++.+-..
T Consensus 730 -------------~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 730 -------------AYFLSGDYEECLELLISTQR 749 (794)
T ss_pred -------------HHHHcCCHHHHHHHHHhcCc
Confidence 27788999999999876543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.28 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
+|..+...|...|++++|+..|+++++.+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 455566666666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.15 E-value=4.2 Score=37.61 Aligned_cols=185 Identities=12% Similarity=0.034 Sum_probs=81.7
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHH
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 265 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 265 (415)
...|.+....++..+.......-++.+-.+|..-|- +...|..++.+|..+ ..+.-..+|+++.+..-|-.....-
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e---~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE---SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHH
Confidence 444555555555555555555555555555555431 444455555555555 3344445555444432222222222
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---CcCHH
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---ITDVV 342 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~~~ 342 (415)
+..+...++.+++...|.+.... +.|.... +.+.- .|..|+..- ..+.|...++...+... ..-..
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yr-fI~~~q~--~~i~e------vWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~V 206 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYR-FIPRRQN--AAIKE------VWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSV 206 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHH-hcchhhh--hhHHH------HHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHH
Confidence 22222334455555555554432 1111100 00000 011122111 23444444444444333 11223
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
.+.-+-.-|....++.+|++++..+++.+-.+.-+-..++.-+
T Consensus 207 l~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 207 LMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 3334444555666666677766666666665555555555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.04 E-value=2.1 Score=35.44 Aligned_cols=88 Identities=10% Similarity=0.070 Sum_probs=58.2
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCC------CcCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHcccC----CCccHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSE------ITDV-VVRRILLGACSFHGNVEMGERVTRKVLEMERG----NGGDYV 379 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~------~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 379 (415)
|+.....|.+..++++|-..+.+-... .|+. ..|...|-.+.-..|+..|.+.++.-.+.+-- +..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 344566688888888876665433222 3333 24555666677778999999999887665522 456777
Q ss_pred HHHHHHHhcCchhhHHHHHH
Q 039757 380 LMYNILAGVGRYVDAERLRR 399 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~ 399 (415)
.|+.+|- .|+.+++..++.
T Consensus 233 nLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHhc-cCCHHHHHHHHc
Confidence 8887774 677777776663
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.24 Score=27.31 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 039757 229 SNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
+..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555666666666666666655
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.90 E-value=6 Score=34.57 Aligned_cols=117 Identities=11% Similarity=-0.007 Sum_probs=79.7
Q ss_pred hcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHc---CCCCchhhHHHHHHH
Q 039757 36 SLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV---GFQSHVYVNTALVNM 112 (415)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~ 112 (415)
.-+|+..+|-..++++. ..-+. |..+++..-.+|...|+.+.-...++++.-. ++|..+.+...+.-+
T Consensus 114 ~~~g~~h~a~~~wdklL---~d~Pt------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLL---DDYPT------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hccccccHHHHHHHHHH---HhCch------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34567777777777777 44444 7777777778888888888888888777543 333334444455556
Q ss_pred HHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 113 YVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
+..+|-+++|++.-++..+ -|.-.-.+....+-..|++.++.++..+-.
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 6778888888888877665 244455566666777788888888776654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.90 E-value=13 Score=38.36 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCchhhHHHHHHHHHcCC--ChhHHHHHhcccC
Q 039757 100 QSHVYVNTALVNMYVSLG--FLKDSSKLFDELP 130 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~ 130 (415)
.|+ .....+|..|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 455 55566888898888 6777877776665
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.82 Score=38.59 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=81.4
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHHcc-----CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc----chHHHH
Q 039757 245 ALKLFEDISVERKNLVSWTSIISGFAMH-----GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL----HYGCLV 315 (415)
Q Consensus 245 A~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----~~~~li 315 (415)
.++.|..+...+.|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|..||..+.+... .+....
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 3455555554446777788888777653 5677788889999999999999999999998776654 333344
Q ss_pred HHhHhcCCHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCC
Q 039757 316 DMLGRAGRLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGN 356 (415)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~ 356 (415)
-.|-++ -+-+++++++|... .||..+-..|+.++.+.+-
T Consensus 133 ~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 444333 34578889988876 8999999999999887664
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.23 Score=38.07 Aligned_cols=129 Identities=10% Similarity=0.139 Sum_probs=84.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHH
Q 039757 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109 (415)
Q Consensus 30 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 109 (415)
.++..+.+.+.+.....+++.+. ..+.. - +....+.++..|++.++.+...++++.. +..-...+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~---~~~~~--~---~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~ 76 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALV---KENKE--N---NPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKA 76 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHH---HTSTC------SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH---hcccc--c---CHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHH
Confidence 56788888999999999999998 55544 3 7888999999999998888888887721 11233446
Q ss_pred HHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC
Q 039757 110 VNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 180 (415)
+..|.+.|.+++|.-++..+...+. .+..+...++++.|.+.+.+. .+...|..+++.+...+.
T Consensus 77 ~~~c~~~~l~~~a~~Ly~~~~~~~~-----al~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 77 LRLCEKHGLYEEAVYLYSKLGNHDE-----ALEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHTTTSHHHHHHHHHCCTTHTT-----CSSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHhcchHHHHHHHHHHcccHHH-----HHHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 6777777777777777776653111 111133345555555444444 346677777777766554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.71 E-value=8.4 Score=35.78 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=30.4
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
+.+.+..++++|... ..+.-..+++.+++-.+ .+...-..|...|.+ ++.+.+..+|.++..
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 344555555555555 44444555555555422 133333444444444 555555555555544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=11 Score=37.09 Aligned_cols=48 Identities=0% Similarity=-0.143 Sum_probs=26.1
Q ss_pred HHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHH
Q 039757 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRR 399 (415)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 399 (415)
.+...|+...|...+..+... .+......+...-.+.|.++.++....
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 344556666777666666653 223344445555555666655555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.45 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
+|..+..+|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4445555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.49 E-value=11 Score=36.82 Aligned_cols=45 Identities=7% Similarity=0.039 Sum_probs=27.5
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhh
Q 039757 102 HVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKW 147 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 147 (415)
+..+|. +|-.|.|+|++++|.++..+..+ .....+-..+..|+..
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 344554 67778889999999888833332 3334556666666554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=92.38 E-value=2.8 Score=31.85 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=72.5
Q ss_pred hhccCCcchHH--HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC-CchHHHHHH
Q 039757 16 LTTNSLLHHTL--LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY-PNLGTQLHA 92 (415)
Q Consensus 16 ~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 92 (415)
+......+++. ..|.++.-....+++...+.+++.+.-.....+.+-. +...|..++.+..+..- --.+..+|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~---~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWL---DNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhc---ccchHHHHHHHHccChHHHHHHHHHHH
Confidence 34344666665 4789999888889999888888887532222111112 77899999999976664 345788999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHcC
Q 039757 93 VISKVGFQSHVYVNTALVNMYVSL 116 (415)
Q Consensus 93 ~~~~~g~~~~~~~~~~li~~~~~~ 116 (415)
.+++.+.+++..-|..+|.++.+-
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcC
Confidence 999888899999999999988654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.38 Score=27.30 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCC
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHS 60 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 60 (415)
..+++.+...|...|++++|..++++...+.+.-..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999865444333
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.4 Score=40.09 Aligned_cols=93 Identities=12% Similarity=-0.055 Sum_probs=47.6
Q ss_pred HhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHH
Q 039757 319 GRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
...|+++.+.+.+...... .....+...+++.....|+++.|...-..|+.....+++........-...|-++++...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 3455555555555443332 223445555555555556666666666665555555444444333333444555566655
Q ss_pred HHHHhhhccccCCC
Q 039757 398 RRVMDERNALKFPG 411 (415)
Q Consensus 398 ~~~m~~~~~~~~~~ 411 (415)
+++....+.+...|
T Consensus 414 wk~~~~~~~~~~~g 427 (831)
T PRK15180 414 WKRVLLLNPETQSG 427 (831)
T ss_pred HHHHhccCChhccc
Confidence 55555544444444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.94 E-value=9 Score=34.39 Aligned_cols=194 Identities=11% Similarity=0.015 Sum_probs=102.4
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--------CchhhHHHHHHHHH
Q 039757 74 LIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--------RNLVTWNVMITGLV 145 (415)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~ 145 (415)
...+.-+.|+++...+........ .++...+.++... +.++.+++...++.... -....|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 355677888888855555554322 2455556555443 78888888888877653 12223333333333
Q ss_pred hhCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhc-CCC
Q 039757 146 KWGELEYARSLFEEMPCR--NVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR-GFN 222 (415)
Q Consensus 146 ~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 222 (415)
+...+.+..++.+-.... +......++..+...=. . ..++..++..++. +-..+... ...
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~--~--~~~~~~~~~~il~-------------~R~~~l~~~~~~ 142 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLP--N--MQDDFSVWEPILS-------------LRRLVLSLILLP 142 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH--H--hccchHHHHHHHH-------------HHHHHHhcccch
Confidence 333333333333322111 01122222222211100 0 1222223322222 11111110 112
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-----CChhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-----KNLVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
.....++..++..+-+.|+++.|...+..+.... ..+...-.-+..+...|+..+|+..+++....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2256778888889999999999999998887642 13344555567777888989999988888773
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.86 E-value=9.3 Score=34.40 Aligned_cols=79 Identities=5% Similarity=-0.084 Sum_probs=53.2
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcC---CCCchhhHHHHHHHHHc---CCChhHHHHHhcccC-C---Cchhh
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG---FQSHVYVNTALVNMYVS---LGFLKDSSKLFDELP-E---RNLVT 136 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~-~---~~~~~ 136 (415)
+..+...++-+|....+++...++.+.+.... +.-...+--...-++.+ .|+.++|++++..+. + +++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 55556667777888889999999999887642 11122223344555667 788999999887733 2 56777
Q ss_pred HHHHHHHHH
Q 039757 137 WNVMITGLV 145 (415)
Q Consensus 137 ~~~li~~~~ 145 (415)
|..+...|-
T Consensus 220 ~gL~GRIyK 228 (374)
T PF13281_consen 220 LGLLGRIYK 228 (374)
T ss_pred HHHHHHHHH
Confidence 877777663
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.46 Score=37.85 Aligned_cols=90 Identities=12% Similarity=-0.005 Sum_probs=67.8
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT------DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
+...|++++|..-|.+....-| ....|..-..++.+.+.++.|+.-..+.++.+|....+...-..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 5677888888888776655422 1223444455678888999999999999999888777777778889889999
Q ss_pred hhHHHHHHHHhhhccc
Q 039757 392 VDAERLRRVMDERNAL 407 (415)
Q Consensus 392 ~~A~~~~~~m~~~~~~ 407 (415)
++|++=++++.+....
T Consensus 185 eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 185 EEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999888888766543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.83 E-value=4.3 Score=32.45 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=87.7
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD 340 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (415)
.|..++.... .+.+ +.....+.+... +...+|..+-.- .+...+..+|++++|..-++..... |.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~---n~~t~Ya~laaL---------~lAk~~ve~~~~d~A~aqL~~~l~~-t~ 120 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQA---NGKTIYAVLAAL---------ELAKAEVEANNLDKAEAQLKQALAQ-TK 120 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhh---ccccHHHHHHHH---------HHHHHHHhhccHHHHHHHHHHHHcc-ch
Confidence 3555555443 3444 555566666653 334444433221 2677899999999999999876655 33
Q ss_pred HHHH-----HHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 341 VVVR-----RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 341 ~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
...+ -.|.+.....|.+++|+..++...+.+.. ......-++++...|+-++|+.-+++....+
T Consensus 121 De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 121 DENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3333 34566788899999999999876654322 2334567889999999999999999998887
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.61 E-value=3.5 Score=33.96 Aligned_cols=19 Identities=5% Similarity=-0.041 Sum_probs=8.5
Q ss_pred CChHHHHHHHHHHHHcccC
Q 039757 355 GNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~ 373 (415)
+++.+|+++|+++......
T Consensus 168 eqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3444444444444443333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.67 Score=24.79 Aligned_cols=28 Identities=21% Similarity=0.142 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
.+..+..+|...|++++|.+.|++....
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555555666666666666555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.9 Score=34.43 Aligned_cols=70 Identities=14% Similarity=0.037 Sum_probs=40.0
Q ss_pred HhcCCHHHHHHHHhcCCCCCcC---HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCc
Q 039757 319 GRAGRLEQAEKIALGIPSEITD---VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (415)
...++.+++..++..+.--.|+ ..++. ...+...|++++|.++|+.+.+..+..+..-..+..++...|+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 4467777777777666544343 33333 2335677788888888887777665443333333334444444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.46 E-value=28 Score=39.03 Aligned_cols=137 Identities=10% Similarity=0.002 Sum_probs=82.9
Q ss_pred HHHHHHHhcCCCchHHHHHHHH----HHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcc-cCCCchhhHHHHHHHHHhh
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVI----SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE-LPERNLVTWNVMITGLVKW 147 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~ 147 (415)
++..+-.+.+.+.+|...++.- ++.. -....+-.+...|+.-+++|...-+... ..+|+ ...-|-.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhh
Confidence 5556667778888888888873 2211 1233344455589999999888877763 33343 22334456678
Q ss_pred CCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhccCCCCcc---------CCCchHH-HHhHHHHHhhcCChhHHHHHHh
Q 039757 148 GELEYARSLFEEMPC--RN-VVSWTGILDGYTRMNRSNGAS---------TEPSEIT-ILAVLPAIWQNGAVRNCQLIHG 214 (415)
Q Consensus 148 g~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~---------~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~ 214 (415)
|+|..|...|+.+.+ |+ ..+++-++......|.++... ..+.... ++.-..+-.+.++++..+..+.
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999985 33 445666666655555555444 1111111 2223334466777777666665
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.44 E-value=7.7 Score=32.59 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCCh----hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 295 (415)
+.+.|.+.|.+..|..-++.|.+.-|+. ...-.+..+|...|..++|...-+-+... .|+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N--~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN--YPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCc
Confidence 4566777777777777777777763322 23555666777777777777766666554 45554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=12 Score=34.53 Aligned_cols=90 Identities=7% Similarity=-0.069 Sum_probs=56.5
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
|.--...||...|-+-+..... ..... | +....-+. .....|+++.+.+.+....+. +.....+...++.
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr--~~~~~--p---~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r 365 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALR--NQQQD--P---VLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLR 365 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHH--hCCCC--c---hhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHH
Confidence 4444557887776654444441 22222 3 44433333 345678888888888776432 3445667777888
Q ss_pred HHHcCCChhHHHHHhcccCC
Q 039757 112 MYVSLGFLKDSSKLFDELPE 131 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~ 131 (415)
...+.|++++|..+-+-|..
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLS 385 (831)
T ss_pred hhhchhhHHHHHHHHHHHhc
Confidence 88888899888888777653
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.22 E-value=7.2 Score=37.68 Aligned_cols=179 Identities=12% Similarity=0.016 Sum_probs=109.9
Q ss_pred hhHHHHHHhhhhhcCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHhhhh------CCChhhHHHHHHHHHccC-
Q 039757 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDT-----YAKCGCIFSALKLFEDISVE------RKNLVSWTSIISGFAMHG- 273 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~li~~~~~~~- 273 (415)
...+...++...+.| +......+..+ +....+.+.|..+|+.+.+. .-+.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 567888888888886 33333333333 34556999999999988661 124456667777777743
Q ss_pred ----chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh---cCCHHHHHHHHhcCCCCCcCHHHHHH
Q 039757 274 ----MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR---AGRLEQAEKIALGIPSEITDVVVRRI 346 (415)
Q Consensus 274 ----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~ 346 (415)
+.+.|..++.+.-..|. |+...+.. ..|.. ..+...|.++|...... -....+-.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg----------------~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~A~~~ 365 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLG----------------VLYETGTKERDYRRAFEYYSLAAKA-GHILAIYR 365 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHH----------------HHHHcCCccccHHHHHHHHHHHHHc-CChHHHHH
Confidence 67789999998888764 34433222 11221 24578999999887766 23333333
Q ss_pred HHHHHh----hcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 347 LLGACS----FHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 347 l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
+..+|. ...+.+.|..++++..+.+.+...--......+.. ++++.+.-.+..+...|..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 333222 34578999999999999884322222222233333 7777777776666655543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.49 Score=40.99 Aligned_cols=88 Identities=10% Similarity=-0.004 Sum_probs=67.5
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 393 (415)
..-|.++|++++|++.|.......| +.+++..=..+|.+.+.+..|+.-.+.++..+..-..+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 3448899999999999987776657 888888888899999999999888888887766555566666666666677777
Q ss_pred HHHHHHHHh
Q 039757 394 AERLRRVMD 402 (415)
Q Consensus 394 A~~~~~~m~ 402 (415)
|.+-.+...
T Consensus 184 AKkD~E~vL 192 (536)
T KOG4648|consen 184 AKKDCETVL 192 (536)
T ss_pred HHHhHHHHH
Confidence 766555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.92 E-value=18 Score=35.88 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=60.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHH
Q 039757 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109 (415)
Q Consensus 30 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 109 (415)
...+.+-+.|++++|...+-+-+ |.. ++ ..+|.-+........-..+++.+.+.|+. +...-..|
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI-----~~l------e~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlL 437 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETI-----GFL------EP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLL 437 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHc-----ccC------Ch---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHH
Confidence 33445566899999998887765 222 11 23566666777777778888888888864 55556678
Q ss_pred HHHHHcCCChhHHHHHhcccC
Q 039757 110 VNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~ 130 (415)
+.+|.+.++.++-.++.+...
T Consensus 438 LncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 438 LNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHhcchHHHHHHHhcCC
Confidence 899999988887777776655
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=10 Score=32.94 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=12.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
..+.++...|+. +|...+..+....
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~ 264 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKF 264 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhC
Confidence 344455555553 4555555554433
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.86 E-value=3.1 Score=35.31 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=84.8
Q ss_pred HHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----Cc
Q 039757 265 IISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-----IT 339 (415)
Q Consensus 265 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p 339 (415)
+..-..+.+++++|+..+.++...|+..|..+.+.-=.+ ...+...|...|+...-.+......+. .|
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~t-------vlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~ 81 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEAT-------VLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP 81 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHH-------HHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch
Confidence 344566788899999999999999988888877653333 233677788888776655544322211 22
Q ss_pred -CHHHHHHHHHHHhh-cCChHHHHHHHHHHHHcccCCC------ccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 340 -DVVVRRILLGACSF-HGNVEMGERVTRKVLEMERGNG------GDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 340 -~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
......+|+.-+-. ...++..++++....+.....- ..-..++..+.+.|++.+|..++..+.
T Consensus 82 k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 82 KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33455666665543 3456777777777666543322 223357888999999999998776554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.25 E-value=1.6 Score=37.50 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-----CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-----KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
|....+...++..-....++++++..+-++...+ ++... .+.++.+ -.-++++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3355555666666666678999999988887762 22211 1222222 234678999999999999999999998
Q ss_pred HHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (415)
.. +++.+.+.++..+|.++.-.|..
T Consensus 139 c~--------------l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CL--------------LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HH--------------HHHHHHhcccHHHHHHHHHHHHH
Confidence 88 66668888888888877655543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.97 Score=24.18 Aligned_cols=30 Identities=20% Similarity=0.056 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
+|..+...|...|++++|.+.|++..+..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555556666666666666666655544
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.97 E-value=6.5 Score=29.29 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCC
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 290 (415)
.......++.....|+-+.-.+++.++... .+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333444455555556555555555555422 34555555555666666666666666665555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.91 E-value=21 Score=35.09 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=67.4
Q ss_pred HHcCCChhHHHHHhcccCC--C---chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCcc--
Q 039757 113 YVSLGFLKDSSKLFDELPE--R---NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGAS-- 185 (415)
Q Consensus 113 ~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~-- 185 (415)
+.+.+.+++|+.+-+.... + -...+...|..+.-.|++++|-...-.|...+..-|.-.+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc
Confidence 3444455555555444432 1 12234455555555555555555555555555555555555554444433332
Q ss_pred -----CCCchHHHHhHHHHHhhcCChhHHHHH------------------HhhhhhcCCCCCCHHHHHHHHHHHHhcCCH
Q 039757 186 -----TEPSEITILAVLPAIWQNGAVRNCQLI------------------HGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242 (415)
Q Consensus 186 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~------------------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (415)
...+...|..++..+.. .+...-.++ ..+..+. .. +...-..|+..|...+++
T Consensus 446 lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se-~~~L~e~La~LYl~d~~Y 521 (846)
T KOG2066|consen 446 LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SE-STALLEVLAHLYLYDNKY 521 (846)
T ss_pred CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--cc-chhHHHHHHHHHHHccCh
Confidence 12233444444444433 111111111 1111111 11 333445588899999999
Q ss_pred HHHHHHHHHhhh
Q 039757 243 FSALKLFEDISV 254 (415)
Q Consensus 243 ~~A~~~~~~~~~ 254 (415)
++|..++-+...
T Consensus 522 ~~Al~~ylklk~ 533 (846)
T KOG2066|consen 522 EKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHhccC
Confidence 999999887765
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.65 Score=24.58 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 379 VLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 379 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..++.++.+.|++++|.+.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.65 E-value=8.5 Score=30.19 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=19.3
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
.+.+.+.++.+ +...+..+++.+.+.|++.....++.
T Consensus 17 irSl~~~~i~~-~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 17 IRSLNQHNIPV-QHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 33334444433 55566666666666666555444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.24 E-value=24 Score=34.76 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=45.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCC---chhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQS---HVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGEL 150 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 150 (415)
++.+.+.+.+++|+...+... |..| -......+|+.+...|++++|-...-.|...+..-|---+..+...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 455666677777777666542 3344 3456777888888888888888777776654444444444444444443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.82 Score=24.17 Aligned_cols=29 Identities=7% Similarity=-0.014 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
-.+..++.+.|++++|.+.|+++++..|.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34566777788888888888888887764
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.91 E-value=2.2 Score=34.71 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=51.5
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC----CChhhHHHHHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER----KNLVSWTSIIS 267 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~li~ 267 (415)
|.+..++.+.+.+...++....+.-++. .|.+......+++.+|-.|+|++|..-++-.-... +....|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3444556666777788888877777776 57677777888888888888888887776654442 23445666665
Q ss_pred H
Q 039757 268 G 268 (415)
Q Consensus 268 ~ 268 (415)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.91 E-value=0.57 Score=23.53 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=15.7
Q ss_pred cHHHHHHHHHhcCchhhHHHHHH
Q 039757 377 DYVLMYNILAGVGRYVDAERLRR 399 (415)
Q Consensus 377 ~~~~l~~~~~~~g~~~~A~~~~~ 399 (415)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566777777777777777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.63 E-value=18 Score=32.49 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=70.7
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHH------------HHHHHhhcCChHHHHHHHHHHHHcccCCC-----
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI------------LLGACSFHGNVEMGERVTRKVLEMERGNG----- 375 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 375 (415)
.|..-+..+|++++|..++.+..-. ||.+ -++.|...+|+-.|--+-+++.......+
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE-----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE-----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh-----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 4677888999999999998876544 3333 36678888999999888888877776533
Q ss_pred --ccHHHHHHHHHhcCchhhHHHHHHHHhhhccccC
Q 039757 376 --GDYVLMYNILAGVGRYVDAERLRRVMDERNALKF 409 (415)
Q Consensus 376 --~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 409 (415)
.-|..+++.....+.+=++.+.++.....|....
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 3577788888888999999999988877665544
|
|
| >PF14669 Asp_Glu_race_2: Putative aspartate racemase | Back alignment and domain information |
|---|
Probab=88.60 E-value=11 Score=30.09 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-----------C-----CChhhHHHHHHHHHccCchHHHHHHHHH
Q 039757 231 CLIDTYAKCGCIFSALKLFEDISVE-----------R-----KNLVSWTSIISGFAMHGMGKAAVENFER 284 (415)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~~~-----------~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~ 284 (415)
+++..|.+.-+|.+..++++.|.+. + +--..-|.-...|.++|..|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3455566666666666666665443 1 2234466666777777777777777763
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.58 E-value=4.6 Score=28.41 Aligned_cols=61 Identities=7% Similarity=-0.003 Sum_probs=39.7
Q ss_pred hhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHH
Q 039757 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIIS 267 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~ 267 (415)
.-+..+-+..+......| ++.+..+.+++|-+.+++..|.++|+.++..- +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP-~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVP-EPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCC-ChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 335566666777776666 88888888888888888888888888877662 22225666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.33 E-value=13 Score=30.50 Aligned_cols=165 Identities=9% Similarity=-0.150 Sum_probs=94.3
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 269 (415)
...||-+.--+...|+++.|.+.|+...+. +|....+...-.-++--.|+++.|.+-|.+--...|+- .|.+|---.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D-PfR~LWLYl 175 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND-PFRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC-hHHHHHHHH
Confidence 445666666677889999999999988887 45444433322223444688888887776655543321 233332222
Q ss_pred H-ccCchHHHHHHHH-HHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----CcCHH
Q 039757 270 A-MHGMGKAAVENFE-RMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-----ITDVV 342 (415)
Q Consensus 270 ~-~~~~~~~A~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p~~~ 342 (415)
. ..-++.+|..-+. +..+ .|...|...|-. .|.-.=..+.+.+-....... ..-..
T Consensus 176 ~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~-------------~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTE 238 (297)
T COG4785 176 NEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVE-------------FYLGKISEETLMERLKADATDNTSLAEHLTE 238 (297)
T ss_pred HHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHH-------------HHHhhccHHHHHHHHHhhccchHHHHHHHHH
Confidence 2 2336667765443 3332 354555543332 232222223332222222211 11235
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcccCC
Q 039757 343 VRRILLGACSFHGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (415)
||--|..-+...|+.++|..+|+..+..++-+
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 77778888899999999999999998877654
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.18 E-value=18 Score=32.68 Aligned_cols=71 Identities=10% Similarity=-0.018 Sum_probs=49.7
Q ss_pred CcchH-HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHc
Q 039757 21 LLHHT-LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV 97 (415)
Q Consensus 21 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 97 (415)
++-++ ..+..+...|...|+++.|++.+.+........-. ....|-.+|....-.|+|.....+..+..+.
T Consensus 145 iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 145 IKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH------VINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 44433 46888889999999999999999986632222211 4556777777777888888777777776553
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.12 E-value=1.3 Score=24.94 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455566666666666666666665543
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.09 E-value=17 Score=31.71 Aligned_cols=137 Identities=12% Similarity=0.039 Sum_probs=78.4
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh------CCChh
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLV 260 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~ 260 (415)
..|...++.+.. .+....++-.+..+...+.-+...-....-.....||+.|+.+.|.+.+++..+. +.|+.
T Consensus 67 ~~D~~~l~~m~~--~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 67 KLDQDLLNSMKK--ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred eccHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 344444444443 1223344444444555544223324556666778899999999999999887664 24544
Q ss_pred hHHHHHH-HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 261 SWTSIIS-GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 261 ~~~~li~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
.+.+-+. -|..+.-..+-++..+.|.+.|...+...--.+-.+ + .+....++.+|-.+|-+....
T Consensus 145 f~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~G----------l--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 145 FYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQG----------L--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHH----------H--HHHHHHhHHHHHHHHHHHccc
Confidence 4433332 344444556666677777777877766543332222 1 133456788888888666544
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=88.06 E-value=9.4 Score=34.48 Aligned_cols=127 Identities=10% Similarity=0.008 Sum_probs=82.0
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcC-------------------
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI------------------- 334 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------------- 334 (415)
.++++...|......+ |......+++.+...-+++-.+...+...|+...|.+++++.
T Consensus 9 ~Y~~~q~~F~~~v~~~---Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~ 85 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSH---DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNL 85 (360)
T ss_pred HHHHHHHHHHHHHHcc---CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 3445555555554432 333333333333322223444667788888888776654432
Q ss_pred CC---C----Cc-CHHHHHH---HHHHHhhcCChHHHHHHHHHHHHcccC-CCccHHHHHHHH-HhcCchhhHHHHHHHH
Q 039757 335 PS---E----IT-DVVVRRI---LLGACSFHGNVEMGERVTRKVLEMERG-NGGDYVLMYNIL-AGVGRYVDAERLRRVM 401 (415)
Q Consensus 335 ~~---~----~p-~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~m 401 (415)
.. + .+ |...|.+ .|..+.+.|-+..|.++.+.+...+|. |+-.-...|+.| .++++++--+++.+..
T Consensus 86 ~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 86 TSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred ccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 10 0 22 3333433 456788999999999999999999999 888888888877 4789999888888876
Q ss_pred hh
Q 039757 402 DE 403 (415)
Q Consensus 402 ~~ 403 (415)
..
T Consensus 166 ~~ 167 (360)
T PF04910_consen 166 LA 167 (360)
T ss_pred hh
Confidence 65
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.06 E-value=4.9 Score=27.96 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=44.9
Q ss_pred ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHH
Q 039757 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIIS 267 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~ 267 (415)
|.-++.+-++.+......| ++.+..+.+++|-+.+++..|.++|+.++.. +.+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP-~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVP-EPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 4556667777777777777 8888888888888888999999988877754 223445555553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.73 E-value=7.9 Score=31.28 Aligned_cols=75 Identities=11% Similarity=-0.164 Sum_probs=59.1
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CCChhhHHHHHHHHHccCchHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKNLVSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~ 277 (415)
...-+.|.+.|-.+...+... ++.....|...|. ..+.+++..++....+. .+|+..+..|+..|.+.|+++.
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELE-TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 334466777777777777554 7888888887777 66899999999888765 3678889999999999999998
Q ss_pred HH
Q 039757 278 AV 279 (415)
Q Consensus 278 A~ 279 (415)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 85
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.60 E-value=6.8 Score=33.56 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=65.4
Q ss_pred hhHHHHHHhHhhccCCcchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC
Q 039757 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSL-AD-SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 83 (415)
..|.++|+.+-..+.+..|..+-..+++.... .+ ....-.++.+-+.+ ..+-. + +..+...++..++..++
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~--t~~~~--l---~~~vi~~Il~~L~~~~d 217 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVS--TFSKS--L---TRNVIISILEILAESRD 217 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHh--ccccC--C---ChhHHHHHHHHHHhccc
Confidence 35566666444434456666666666666655 22 22223334444432 22222 4 55666666777777777
Q ss_pred CchHHHHHH-HHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcc
Q 039757 84 PNLGTQLHA-VISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE 128 (415)
Q Consensus 84 ~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 128 (415)
+....++++ .....+..-|...|...|......|+..-..++.++
T Consensus 218 W~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 218 WNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 776666664 355545556666677777777777776666666654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.38 E-value=12 Score=29.30 Aligned_cols=43 Identities=7% Similarity=0.113 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 88 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
.+++..+.+.+++|+...+..+++.+.+.|+......++.-=.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence 3455555667777887888888888888887777666665433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.09 E-value=1.8 Score=23.12 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555666666666666666666554
|
... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.99 E-value=12 Score=32.21 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=97.8
Q ss_pred HHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHh-cC-CC
Q 039757 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYT-HSHSPLRPLFDSFTYSFLIRTCVT-LS-YP 84 (415)
Q Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~l~~~~~~-~~-~~ 84 (415)
...+++-+..+-...+... |..++. ++..+.+|+.+|+... . ..+- . |..+-..+++.... .+ ..
T Consensus 115 li~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~---~~~~Ii--~---d~evislLL~sMv~~~~~~l 182 (292)
T PF13929_consen 115 LISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLN---PDESII--F---DEEVISLLLKSMVIDENTKL 182 (292)
T ss_pred HHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccC---ccccee--e---ChHHHHHHHHHHHhccccch
Confidence 3444444443333233222 666553 3556788999999543 2 1222 3 88888888888877 33 33
Q ss_pred chHHHHHHHHHH-cCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC-----CchhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 85 NLGTQLHAVISK-VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-----RNLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 85 ~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
..--++.+.+.. .|-.++..+...++..+++.+++.+-.++++.... .|...|..+|+...+.|+..-..++.+
T Consensus 183 ~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 183 NALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred hhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 334445555543 34568888888999999999999999999988764 478899999999999999998888887
Q ss_pred hC
Q 039757 159 EM 160 (415)
Q Consensus 159 ~m 160 (415)
+=
T Consensus 263 ~G 264 (292)
T PF13929_consen 263 DG 264 (292)
T ss_pred CC
Confidence 64
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.52 E-value=12 Score=30.13 Aligned_cols=107 Identities=12% Similarity=-0.016 Sum_probs=71.6
Q ss_pred HHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHH
Q 039757 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRR 345 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 345 (415)
.-+...|++++|..-|.+.+.. +.+...-..+++ |..-..++.+.+.++.|+.--....+..|+ .....
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIl---------y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSIL---------YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHH---------HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 3467789999999999888775 233322222222 333556678889999998877666665342 22333
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
.=..+|.+...++.|++=++++.+.+|....+-...++
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 33456888889999999999999999885555444444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.86 E-value=1.6 Score=21.83 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 039757 230 NCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~ 250 (415)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=85.77 E-value=25 Score=31.28 Aligned_cols=234 Identities=13% Similarity=0.098 Sum_probs=121.8
Q ss_pred CCchhhHHHHHHhHhhcc-CCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 2 PSSNNVTTRIHSHLLTTN-SLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
+.+.+.+.+.|.....+- ...--..+|..+..+..+.|.+++++..--.-++. ..... ...+--..|..+.+++-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~-a~~~~--ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT-ARELE--DSDFLLEAYLNLARSNEK 95 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHH
Confidence 445566666666554322 22223346777778888888887765432211110 00000 000022455666666666
Q ss_pred cCCCchHHHHHHHHHHc-CCCC---chhhHHHHHHHHHcCCChhHHHHHhcccCC-------C--chhhHHHHHHHHHhh
Q 039757 81 LSYPNLGTQLHAVISKV-GFQS---HVYVNTALVNMYVSLGFLKDSSKLFDELPE-------R--NLVTWNVMITGLVKW 147 (415)
Q Consensus 81 ~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~ 147 (415)
.-++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+ | ...+|-.|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55666666655544321 2112 112233455666666778888887776542 2 234678888888888
Q ss_pred CCHHHHHHHHhhCCC----CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhh----hc
Q 039757 148 GELEYARSLFEEMPC----RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE----KR 219 (415)
Q Consensus 148 g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~ 219 (415)
.|+++|.-+..+..+ -.+..|+. .........+.-++...|..-.|.+.-++.. ..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~----------------kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSL----------------KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhH----------------HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 888887665554421 11111110 1112223334445555555555554444443 34
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 220 GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
|-.+........+.+.|-..|+.+.|+.-|++...
T Consensus 240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 43333344445667778888888888887776544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.65 E-value=7.6 Score=31.38 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=38.3
Q ss_pred hhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCc
Q 039757 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN 85 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 85 (415)
+.|++.|-.+-..+. .-|+...-.|...|. ..|.+++..++.+..+....+-. + |+..+.+|+..+.+.|+++
T Consensus 123 ~~A~~~fL~~E~~~~-l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~--~---n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 123 QEALRRFLQLEGTPE-LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN--F---NPEILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHcCCCC-CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC--C---CHHHHHHHHHHHHHhcchh
Confidence 344555555554442 244444444444444 45556666666666543333322 3 5666666666666666555
Q ss_pred hH
Q 039757 86 LG 87 (415)
Q Consensus 86 ~a 87 (415)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 44
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.46 E-value=32 Score=32.12 Aligned_cols=92 Identities=10% Similarity=0.089 Sum_probs=68.5
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHH
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK--CGCIFSALKLFEDISVE-RKNLVSWTSIISGFA 270 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~ 270 (415)
+.++.-+.+.+...+|..++..+... +|+....|.-+|..-.. +-++..+.++|+.|... +.|+..|--.+.-=.
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 34566677888899999999999887 67788888888764322 22477888888888776 677777777777666
Q ss_pred ccCchHHHHHHHHHHHh
Q 039757 271 MHGMGKAAVENFERMQK 287 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~ 287 (415)
..|..+-+-.++.+..+
T Consensus 542 ~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMK 558 (568)
T ss_pred cCCCcccccHHHHHHHH
Confidence 78888887777766554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.20 E-value=2.3 Score=34.57 Aligned_cols=74 Identities=14% Similarity=0.024 Sum_probs=57.1
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC---CCccHHHHHHHH
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG---NGGDYVLMYNIL 385 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~ 385 (415)
+.-+..+.+.+++++|+...+.-.+.+| +......+++.++-.|++++|..-++..-+..+. ..++|..++++-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 4456778888999999998865554446 5567788999999999999999999988888776 345677776553
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=85.15 E-value=2.5 Score=34.28 Aligned_cols=51 Identities=8% Similarity=0.020 Sum_probs=45.6
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQ 52 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 52 (415)
+.|++......++..+--+..|++.+|..++.++...|+.++|.+..+++.
T Consensus 121 ~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 121 PPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567777788888888777788999999999999999999999999999987
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=25 Score=30.56 Aligned_cols=233 Identities=9% Similarity=-0.067 Sum_probs=129.7
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCc----hHHHHHHHHHHcC
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPN----LGTQLHAVISKVG 98 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~g 98 (415)
+|.......+.++...|. +.+...+..+. .+ + |...-...+.++...|+.+ .+...+..+...
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll---~~-----~---d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELC---SS-----K---NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHH---hC-----C---CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 556666666777776665 33333333333 11 3 5555566666677777643 355555554332
Q ss_pred CCCchhhHHHHHHHHHcCCCh-----hHHHHHhcc-cCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC-CCChhHHHHH
Q 039757 99 FQSHVYVNTALVNMYVSLGFL-----KDSSKLFDE-LPERNLVTWNVMITGLVKWGELEYARSLFEEMP-CRNVVSWTGI 171 (415)
Q Consensus 99 ~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~l 171 (415)
.++..+....+.+++..+.- ..+...+.. +..++..+-...+.++++.|+- +++..+-.+. .++.
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~------ 173 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKDPNG------ 173 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCH------
Confidence 35566665666666554321 223333322 3345556666666777766664 3444443333 3332
Q ss_pred HHHHHhccCCCCccCCCchHHHHhHHHHHhhcC-ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 172 LDGYTRMNRSNGASTEPSEITILAVLPAIWQNG-AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 172 i~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
..-...+.++.+.+ +...+...+..+... + +..+....+.++++.|+. .|...+-
T Consensus 174 -------------------~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~-~~~VR~~A~~aLg~~~~~-~av~~Li 229 (280)
T PRK09687 174 -------------------DVRNWAAFALNSNKYDNPDIREAFVAMLQD---K-NEEIRIEAIIGLALRKDK-RVLSVLI 229 (280)
T ss_pred -------------------HHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---C-ChHHHHHHHHHHHccCCh-hHHHHHH
Confidence 23333333333332 123444445555533 3 777888888888888884 4555555
Q ss_pred HhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 251 DISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 251 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
+..+. ++ .....+.++...|.. +|...+.++.+. .||...-...+.+|.+
T Consensus 230 ~~L~~-~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 230 KELKK-GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHcC-Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 55442 33 345678888888885 688888888764 4677776666666643
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.96 E-value=3.7 Score=35.42 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
.+..+-..++..-....+++.++..+-+++........ | +. +-.++++.|.+ -++++++.++..=++.|+-||
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~--~---~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYL--R---NW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhh--c---cc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccc
Confidence 44445555555555566777777776666410000111 1 21 22233443333 356677777777777888888
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
..+++.+|+.+.+.+++.+|.++.-.|.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8888888888888888777777665554
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.80 E-value=32 Score=31.59 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=56.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC-
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG- 389 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 389 (415)
..|+.-|...|++.+|.+..+++.-- .-....+.+++.+..+.|+-...+.+++.....+ ..|-+.+-.+|.|-.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg---lIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG---LITTNQMTKGFERVYD 589 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC---ceeHHHhhhhhhhhhc
Confidence 45778888889999998888876543 2244578888888888888775555555544433 345555555555432
Q ss_pred -------chhhHHHHHHHHhhhc
Q 039757 390 -------RYVDAERLRRVMDERN 405 (415)
Q Consensus 390 -------~~~~A~~~~~~m~~~~ 405 (415)
+...|.+.|+...+.+
T Consensus 590 sl~DlsLDvPna~ekf~~~Ve~~ 612 (645)
T KOG0403|consen 590 SLPDLSLDVPNAYEKFERYVEEC 612 (645)
T ss_pred cCcccccCCCcHHHHHHHHHHHH
Confidence 2334555555554443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.21 E-value=1.7 Score=25.25 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=17.9
Q ss_pred HHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 380 LMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677777777777777777776543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.98 E-value=19 Score=28.38 Aligned_cols=54 Identities=19% Similarity=0.091 Sum_probs=32.3
Q ss_pred hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
...|.++.+....+-+...+ .|.....-..|.-+-.+.|++.+|...|..+...
T Consensus 143 vD~gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 34444555544444444443 3445556666777777777777777777776654
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=83.82 E-value=9.1 Score=28.48 Aligned_cols=73 Identities=11% Similarity=0.009 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHH
Q 039757 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRV 400 (415)
Q Consensus 325 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 400 (415)
+++.+.|.....-..|......-+. |+.. .+.+.++|+.|...+.. .+..|...+..+...|++++|.++++.
T Consensus 50 er~~~~f~~~~~Y~nD~RylkiWi~-ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 50 ERCIRKFKDDERYKNDERYLKIWIK-YADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHTTSGGGTT-HHHHHHHHH-HHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhhhHhhcCCHHHHHHHHH-HHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4445555433222334443333332 3332 33999999999998877 456788999999999999999999975
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.33 E-value=25 Score=29.27 Aligned_cols=68 Identities=10% Similarity=0.175 Sum_probs=45.6
Q ss_pred hHhcCCHHHHHHHHhcCCCC--------------CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 318 LGRAGRLEQAEKIALGIPSE--------------ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~--------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
+...|++..|+..++.-... .|.+.....++..|.. +++++|.+++.++.+.+..+......+.+
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~FR 280 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLFR 280 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45566666666655432211 5777777777776654 58999999999999988776655555555
Q ss_pred HHH
Q 039757 384 ILA 386 (415)
Q Consensus 384 ~~~ 386 (415)
+.-
T Consensus 281 v~K 283 (333)
T KOG0991|consen 281 VVK 283 (333)
T ss_pred HHH
Confidence 443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.06 E-value=5.2 Score=28.12 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=35.6
Q ss_pred CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHH
Q 039757 338 ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384 (415)
Q Consensus 338 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 384 (415)
.|++.+..+.+++|.+.+++..|+++|+-++.+-......|..+++-
T Consensus 42 VP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 42 VPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQE 88 (108)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 59999999999999999999999999999988766655477766643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.94 E-value=14 Score=26.00 Aligned_cols=53 Identities=13% Similarity=-0.042 Sum_probs=38.9
Q ss_pred HhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 317 MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.+...|++++|..+.+... .||...|-+|.. .+.|-.+++..-+.++...+.|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~p 100 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC--YPDLEPWLALCE--WRLGLGSALESRLNRLAASGDP 100 (115)
T ss_pred HHHccchHHHHHHhcCCCC--CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCCH
Confidence 4677899999998888775 388888877754 3667777777777777666554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.57 E-value=2.5 Score=28.08 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=31.1
Q ss_pred hcCChHHHHHHHHHHHHcccCCC---ccHHHHHHHHHhcCchhhHHHH
Q 039757 353 FHGNVEMGERVTRKVLEMERGNG---GDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
...+.++|+..|+.+++..+.++ .++..|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888777666533 4455677777778887777665
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.53 E-value=11 Score=26.36 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=31.9
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 56 THSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 56 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
....- | ++....+.+++|.+.+++..|.++|+..+.+. ..+...|..+++
T Consensus 35 ~~DlV--P---~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 35 GYDLV--P---EPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred ccccC--C---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 45555 6 77777777788888888878888777765332 223445555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.23 E-value=51 Score=31.99 Aligned_cols=152 Identities=9% Similarity=-0.068 Sum_probs=95.7
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHH-hhcCCChHHHHHHHHHHHH----HhhcCCCCCCCCCCchhHHHHHHHH
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHF-YSLADSPKKAFLLYKQLQQ----IYTHSHSPLRPLFDSFTYSFLIRTC 78 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~l~~~~ 78 (415)
+...+.++++...+.|.+.+-...=.....+ +....|++.|+..|+.+.. .-..+ ++....-+..+|
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--------~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--------LPPAQYGLGRLY 298 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--------CCccccHHHHHH
Confidence 3677889999999998765555554445555 7788999999999999872 00133 233566677777
Q ss_pred HhcC-----CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHc-CCChhHHHHHhcccCC-CchhhHHHHHHHHH----hh
Q 039757 79 VTLS-----YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDSSKLFDELPE-RNLVTWNVMITGLV----KW 147 (415)
Q Consensus 79 ~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~----~~ 147 (415)
.+.. +.+.|..++....+.|. |+.......+..... ..+...|.++|....+ -....+-.+..+|. -.
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVE 377 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcC
Confidence 7754 44569999999888884 565555434333333 2456788888887664 23333333332222 23
Q ss_pred CCHHHHHHHHhhCCCCC
Q 039757 148 GELEYARSLFEEMPCRN 164 (415)
Q Consensus 148 g~~~~a~~~~~~m~~~~ 164 (415)
.+...|..++++.-+.+
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 46677777777765444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=81.85 E-value=35 Score=29.90 Aligned_cols=47 Identities=11% Similarity=0.271 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHcCCCCchhhHHHHHHHHHc--CC----ChhHHHHHhcccCC
Q 039757 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVS--LG----FLKDSSKLFDELPE 131 (415)
Q Consensus 85 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~ 131 (415)
+....+++.|++.|+.-+..+|-+....... .. ...+|..+|+.|++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 4567888999999999888777664444333 12 35677788888875
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.09 E-value=35 Score=29.38 Aligned_cols=138 Identities=8% Similarity=0.020 Sum_probs=82.5
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----CCChhh
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----RKNLVS 261 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~ 261 (415)
...|...++.++.- +..+.++-.+-+++....+.......++..+...|++.++.+.+.++.++.... +.-...
T Consensus 77 ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 45566666666551 122233332334444444334446788889999999999999999998876654 222333
Q ss_pred HHHHHH---HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 262 WTSIIS---GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 262 ~~~li~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
+-..|+ .|....-.++-++..+.|.+.|...+...-...-.+ + .+....++.+|-.++.+....
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~G----------i--~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKG----------I--FKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHH----------H--HHHHHHhhHHHHHHHHHHhcc
Confidence 333333 344455577888899999999887766442222111 1 123345678887777665544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.1e+02 Score=34.87 Aligned_cols=107 Identities=12% Similarity=-0.001 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-
Q 039757 259 LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE- 337 (415)
Q Consensus 259 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 337 (415)
..+|-...+.....|+++.|...+-...+.+ .|.. .. .....+...|+.+.|+.++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i-~~---------------E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEI-VL---------------ERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchH-HH---------------HHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 3468888888888999999987776655543 3322 21 2456688899999999998876643
Q ss_pred CcC--------HHHHHHHHHH---------HhhcCC--hHHHHHHHHHHHHcccCCCccHHHHH
Q 039757 338 ITD--------VVVRRILLGA---------CSFHGN--VEMGERVTRKVLEMERGNGGDYVLMY 382 (415)
Q Consensus 338 ~p~--------~~~~~~l~~~---------~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~ 382 (415)
.|+ +..-+..+.. ....++ .+..++.+..+.+..+.....+..++
T Consensus 1733 ~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1733 FPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred cccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 222 2222222222 122333 35667888888887775444444444
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.71 E-value=37 Score=29.36 Aligned_cols=142 Identities=11% Similarity=-0.006 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHc------------------------
Q 039757 42 KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV------------------------ 97 (415)
Q Consensus 42 ~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------ 97 (415)
.+|+++|.-+.+ ..| + +.+-..++..+-...+...|...+....-.
T Consensus 150 ~KA~ELFayLv~--hkg-k-------~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld 219 (361)
T COG3947 150 RKALELFAYLVE--HKG-K-------EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLD 219 (361)
T ss_pred hHHHHHHHHHHH--hcC-C-------cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEe
Confidence 679999999984 232 2 234456777777777777776665543211
Q ss_pred --CCCCchhhHHHHHHHHHcC-CChhHHHHHhcccCC-----------Cc-----hh----hHHHHHHHHHhhCCHHHHH
Q 039757 98 --GFQSHVYVNTALVNMYVSL-GFLKDSSKLFDELPE-----------RN-----LV----TWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 98 --g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~-----------~~-----~~----~~~~li~~~~~~g~~~~a~ 154 (415)
++..|..-|-+.+...-+- ..++++.++....+. .| .. +.+.....|..+|.+.+|.
T Consensus 220 ~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi 299 (361)
T COG3947 220 AGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAI 299 (361)
T ss_pred cCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 2334555565555444332 235666666555531 01 11 2334445667778888888
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhh
Q 039757 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215 (415)
Q Consensus 155 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 215 (415)
++-++...-| +.++..+..++..+...||--.+...++.
T Consensus 300 ~l~qr~ltld----------------------pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 300 QLHQRALTLD----------------------PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHhhcC----------------------hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 7777776544 34445555555555555554444443333
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.59 E-value=3.4 Score=20.82 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 378 YVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 378 ~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+..++..+...|++++|...+++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444555555555444433
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.51 E-value=36 Score=29.19 Aligned_cols=87 Identities=11% Similarity=-0.003 Sum_probs=48.9
Q ss_pred hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--CChhhHHHHHHHHHc-
Q 039757 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER--KNLVSWTSIISGFAM- 271 (415)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~- 271 (415)
.=|++++..+++.++..-.-+.-+.. ....+.+...-|-.|.+.+.+..+.++-..-...+ .+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~p-EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVP-EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 34566777777777643222221111 11134555556666777777777777666655542 223346666655544
Q ss_pred ----cCchHHHHHHH
Q 039757 272 ----HGMGKAAVENF 282 (415)
Q Consensus 272 ----~~~~~~A~~~~ 282 (415)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 57777777766
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.20 E-value=18 Score=25.48 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=57.5
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCC
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (415)
..++|..+-+.+...+-. ...+-.+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..++...-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 567888888888665422 33333344567889999999999999999999999987754 467777777777766664
Q ss_pred C
Q 039757 163 R 163 (415)
Q Consensus 163 ~ 163 (415)
.
T Consensus 97 s 97 (115)
T TIGR02508 97 S 97 (115)
T ss_pred C
Confidence 3
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.20 E-value=81 Score=33.01 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-----------------------C-----CC--hhhHHHHHHHHHccCchHHHH
Q 039757 230 NCLIDTYAKCGCIFSALKLFEDISVE-----------------------R-----KN--LVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~~~~~-----------------------~-----~~--~~~~~~li~~~~~~~~~~~A~ 279 (415)
-.+..+|...|...+|...|.+.... + +. ..-|-..++.+-+.+..+.+.
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vc 1003 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVC 1003 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34445677888888888888776432 1 11 223667778888888888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChH-
Q 039757 280 ENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVE- 358 (415)
Q Consensus 280 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~- 358 (415)
++-...++. +.++..+... .++.+.......|.+-+|...+-..............++-.++..|+++
T Consensus 1004 QlA~~AIe~-l~dd~ps~a~----------~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1004 QLAVKAIEN-LPDDNPSVAL----------ISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHHHh-CCCcchhHHH----------HHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHH
Confidence 776666553 3333332222 2334566667777777776665443332112234455555566655543
Q ss_pred -----------HHHH-HHHHHHHcccC-CCccHHHHHHHHHhcCchhhHHHH
Q 039757 359 -----------MGER-VTRKVLEMERG-NGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 359 -----------~a~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
+... +++..-+..+- ....|..|-..+.+.++|.+|-.+
T Consensus 1073 L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1073 LATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 3333 33333333333 334455555556677777776544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.6 bits (132), Expect = 2e-08
Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 20/155 (12%)
Query: 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242
A P E + +L ++ Q G + + R+ +
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRL-LAFFKCCLLTDQL 143
Query: 243 ---FSALKLFEDISVERK--NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297
L + +RK L + +++ G+A G K V ++ GL P+ ++
Sbjct: 144 PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS- 202
Query: 298 LSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIAL 332
Y + +GR + + L
Sbjct: 203 -------------YAAALQCMGRQDQDAGTIERCL 224
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 4e-05
Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Query: 108 ALVNMYVSLGFLKDSSKLFDELPER-------NLVTWNVMITGLVKWGELEYARSLFEEM 160
A + L + L + L +N ++ G + G + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 161 PCR----NVVSWTGILDGYTRMNRSNGA 184
+++S+ L R ++ G
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGT 219
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 8e-07
Identities = 51/357 (14%), Positives = 111/357 (31%), Gaps = 99/357 (27%)
Query: 17 TTNSLLHH--TLLFNTLLHFYSLADSPK---------KAFLLYKQLQQIYTHSHSPLRPL 65
+ ++L LL+ ++ S +D +A L + Y + L +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 66 FDSFTY-SFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSK 124
++ + +F + C L L T+ V + + ++ +L + S+ D K
Sbjct: 254 QNAKAWNAFNLS-CKIL----LTTRFKQVTDFLSAATTTHI--SLDHH--SMTLTPDEVK 304
Query: 125 -LF--------DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILD-G 174
L +LP ++T N ++ E + W
Sbjct: 305 SLLLKYLDCRPQDLPRE-VLTTNPRRLSII--AES------IRDGLAT----WDNWKHVN 351
Query: 175 YTRMNRSNGASTE---PSEI----TILAVLPA-----------IWQNGAVRNCQLIHGYG 216
++ +S P+E L+V P IW + + ++
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV---- 407
Query: 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276
N L++ K S ++ ++ V+ +N +A+H +
Sbjct: 408 ----VNKL---HKYSLVEKQPKES-TISIPSIYLELKVKLENE---------YALH---R 447
Query: 277 AAVENFERMQKVGLKPNRVTFLSVLN-ACSHGGLHYGCLVDMLGRAGRLEQAEKIAL 332
+ V+++ + + + + SH G H L E E++ L
Sbjct: 448 SIVDHYNIPKT--FDSDDLIPPYLDQYFYSHIGHH-------LKNI---EHPERMTL 492
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 415 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.5 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.49 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.46 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.26 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.21 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.18 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.11 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.08 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.07 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.06 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.06 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.97 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.92 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.87 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.86 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.83 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.81 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.81 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.79 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.72 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.69 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.64 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.6 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.58 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.55 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.54 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.53 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.5 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.45 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.45 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.42 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.4 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.4 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.4 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.33 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.31 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.29 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.26 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.22 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.21 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.19 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.16 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.13 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.08 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.04 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.02 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.0 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.99 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.99 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.98 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.92 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.92 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.92 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.87 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.85 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.76 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.73 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.69 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.65 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.61 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.61 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.6 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.5 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.47 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.37 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.24 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.15 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.15 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.14 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.13 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.1 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.06 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.01 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.0 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.92 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.91 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.81 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.81 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.71 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.45 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.22 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.01 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.88 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.79 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.49 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.35 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.21 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.04 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.07 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.03 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.99 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.87 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.84 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.72 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.28 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.19 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.03 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.98 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.76 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.21 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.99 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.86 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 90.61 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.52 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.94 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.6 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.88 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.61 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 87.99 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.92 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.8 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.36 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 86.65 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.57 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.41 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.15 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.03 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.86 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 84.99 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.92 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 84.78 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 84.17 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.36 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.96 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.61 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 81.73 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=285.69 Aligned_cols=260 Identities=11% Similarity=-0.063 Sum_probs=198.9
Q ss_pred HHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHH
Q 039757 144 LVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLI 212 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~ 212 (415)
|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|. .+.+..++..++.++.+.|++++|..+
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344555555555555543 45566666666666666666665 233445566666666666666666666
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 291 (415)
++.+.+. .|.+..+++.++.+|.+.|++++|.++|+++.+..| +..+|+.++.+|.+.|++++|.++|++|.+.+ .
T Consensus 362 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 438 (597)
T 2xpi_A 362 SNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-Q 438 (597)
T ss_dssp HHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-T
T ss_pred HHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 6666654 455778888888888888888888888888877644 56788888888888888888888888887753 3
Q ss_pred CChhhHHHHHHHHccCCc--------------------chHHHHHHhHhcCCHHHHHHHHhcCCCC------CcC--HHH
Q 039757 292 PNRVTFLSVLNACSHGGL--------------------HYGCLVDMLGRAGRLEQAEKIALGIPSE------ITD--VVV 343 (415)
Q Consensus 292 p~~~~~~~ll~~~~~~~~--------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~------~p~--~~~ 343 (415)
.+..++..+..+|.+.|+ .|..++..|.+.|++++|.++|+++... .|+ ..+
T Consensus 439 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 366777777777777766 6788999999999999999999887543 365 679
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
|..++.+|.+.|++++|.+.++++.+.+|.+..+|..++.+|.+.|++++|.++++++.+.+.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999988899999999999999999999999999887654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=267.50 Aligned_cols=352 Identities=9% Similarity=-0.012 Sum_probs=288.5
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
|++..|+.++..|.+.|++++|+.+|++|. .. . | +..++..++.+|.+.|++++|..+|+.+... +++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~--~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 149 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVL---DI--T--G---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRS 149 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HH--H--C---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTC
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHH---hh--C--C---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccc
Confidence 688899999999999999999999999998 32 2 5 7789999999999999999999999988653 678
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC-C------------------chhhHHHHHHHHHhhCCHHHHHHHHhhCCC-
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE-R------------------NLVTWNVMITGLVKWGELEYARSLFEEMPC- 162 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 162 (415)
..+++.++.+|.+.|++++|.++|+++.. . +..+|+.++.+|.+.|++++|.++|++|.+
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999996543 2 478999999999999999999999999974
Q ss_pred -CC-hhHHHHH--------------------------------------HHHHHhccCCCCcc--------CCCchHHHH
Q 039757 163 -RN-VVSWTGI--------------------------------------LDGYTRMNRSNGAS--------TEPSEITIL 194 (415)
Q Consensus 163 -~~-~~~~~~l--------------------------------------i~~~~~~~~~~~a~--------~~~~~~~~~ 194 (415)
|+ ...+..+ +..|.+.|++++|. .+++..++.
T Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 309 (597)
T 2xpi_A 230 DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309 (597)
T ss_dssp CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHH
T ss_pred CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHH
Confidence 32 2333333 33344455555554 236677777
Q ss_pred hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccC
Q 039757 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHG 273 (415)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 273 (415)
.++..+.+.|++++|..+|+++.+.+ |.+..+++.++.+|.+.|++++|.++|+++....| +..+|+.++..|.+.|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc
Confidence 78888888888888888888877663 55677777888888888888888888887776543 5667777888888888
Q ss_pred chHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHH
Q 039757 274 MGKAAVENFERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGAC 351 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 351 (415)
++++|..+|+++.+. .|+ ..+ |+.++..|.+.|++++|.++|+++....| +..+|..++.+|
T Consensus 388 ~~~~A~~~~~~~~~~--~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 388 KISEARRYFSKSSTM--DPQFGPA--------------WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH 451 (597)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHH--------------HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCCCHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 888888888887764 333 334 44478889999999999999998876534 778999999999
Q ss_pred hhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 352 SFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.+.|++++|.++|+++.+..+.++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999876
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=238.91 Aligned_cols=213 Identities=10% Similarity=0.018 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCC-chhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh
Q 039757 42 KKAFLLYKQLQQIYTHSHSPLRPLFD-SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 120 (415)
Q Consensus 42 ~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 120 (415)
..+..+.+.+. ..+.. + . ...++.+|.+|++.|++++|.++|++|.+.|++||..+||+||.+|++.+...
T Consensus 7 s~~e~L~~~~~---~k~~~--~---spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~ 78 (501)
T 4g26_A 7 SPSENLSRKAK---KKAIQ--Q---SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAAT 78 (501)
T ss_dssp -------------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCS
T ss_pred chHHHHHHHHH---Hhccc--C---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchh
Confidence 34455556666 55555 3 3 34588889999999999999999999999999999999999999998877643
Q ss_pred HHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHH
Q 039757 121 DSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI 200 (415)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~ 200 (415)
++ .+.+.+++|.++|++|...+ ..||..||+.++.+|
T Consensus 79 ~~----------------------~~~~~l~~A~~lf~~M~~~G---------------------~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 79 ES----------------------SPNPGLSRGFDIFKQMIVDK---------------------VVPNEATFTNGARLA 115 (501)
T ss_dssp SS----------------------SCCHHHHHHHHHHHHHHHTT---------------------CCCCHHHHHHHHHHH
T ss_pred hh----------------------hhcchHHHHHHHHHHHHHhC---------------------CCCCHHHHHHHHHHH
Confidence 32 12344566777777776555 566777777777777
Q ss_pred hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--CCChhhHHHHHHHHHccCchHHH
Q 039757 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKAA 278 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A 278 (415)
++.|++++|.++|++|.+.|+.| +..+|+++|.+|++.|++++|.++|++|.+. .||..||++||.+|++.|+.++|
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 77777777777777777777766 8889999999999999999999999988877 48888999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 279 VENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
.++|++|++.|+.|+..||+.++..|..
T Consensus 195 ~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 195 YKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9999999998999999998887776543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-27 Score=216.46 Aligned_cols=351 Identities=12% Similarity=0.021 Sum_probs=255.6
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
++.+.|.+.+..+.+..+ .+...+..+...+...|++++|...++... ...+. +..+|..+...+.+.|
T Consensus 13 g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~---~~~p~------~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAI---KQNPL------LAEAYSNLGNVYKERG 81 (388)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCC------chHHHHHHHHHHHHCC
Confidence 567788888887776542 334556677777888888888888888887 55444 7778888888888888
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
++++|.+.|+.+.+.. +.+...|..+..++.+.|++++|.+.|+++.+ |+ ...+..+...+...|++++|.+.|++
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888988888887764 34556788888888888888888888888764 43 45677788888888889888888888
Q ss_pred CCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc
Q 039757 160 MPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239 (415)
Q Consensus 160 m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (415)
+.+.+ +.+..++..+...+...|++++|...|+++.+. .|.+...+..+...+...
T Consensus 161 al~~~----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 161 AIETQ----------------------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHC----------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT
T ss_pred HHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHc
Confidence 76321 223455666666677777777777777777776 455677777777777777
Q ss_pred CCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHh
Q 039757 240 GCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDML 318 (415)
Q Consensus 240 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~ 318 (415)
|++++|...|++.....| +..++..+..+|...|++++|...|+++.+. .|+.... +..+...|
T Consensus 217 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-------------~~~l~~~~ 281 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDA-------------YCNLANAL 281 (388)
T ss_dssp TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHH-------------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHH-------------HHHHHHHH
Confidence 777777777777766644 4566777777777777777777777777764 3443221 22355667
Q ss_pred HhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHH
Q 039757 319 GRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
.+.|++++|.+.|+++... .++..++..+...+...|++++|.+.++++.+..|.+..++..++.+|.+.|++++|.+.
T Consensus 282 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777766544 235667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhh
Q 039757 398 RRVMDER 404 (415)
Q Consensus 398 ~~~m~~~ 404 (415)
++++.+.
T Consensus 362 ~~~a~~~ 368 (388)
T 1w3b_A 362 YKEAIRI 368 (388)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 7777654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-28 Score=220.50 Aligned_cols=326 Identities=15% Similarity=0.033 Sum_probs=281.5
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHH
Q 039757 31 LLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV 110 (415)
Q Consensus 31 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 110 (415)
+...+.+.|++++|++.++.+. ...+. +...+..+...+...|+++.|...++...+.. +.+..+|..+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~---~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg 74 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLW---RQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLG 74 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 3456778999999999999998 55555 67788888889999999999999999998765 56788999999
Q ss_pred HHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCC
Q 039757 111 NMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTE 187 (415)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~ 187 (415)
..|.+.|++++|+..|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+.+ +
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------p 132 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----------------------P 132 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----------------------T
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------C
Confidence 999999999999999999874 4 45679999999999999999999999886422 2
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHH
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSII 266 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 266 (415)
.+...+..+...+...|++++|...|+++.+. .|.+..++..+..++...|++++|...|+++....| +...|..+.
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 210 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 23445666777788899999999999999987 577899999999999999999999999999988866 467899999
Q ss_pred HHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHH
Q 039757 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRR 345 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 345 (415)
..+...|++++|...|++.... .|+.... +..+...|.+.|++++|.+.|+++....| +..+|.
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~-------------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 275 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSL--SPNHAVV-------------HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 9999999999999999998875 5654321 23377779999999999999998876645 567899
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+...+.+.|++++|.+.++++.+..|.+..++..++.++.+.|++++|...++++.+..
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=234.53 Aligned_cols=204 Identities=10% Similarity=0.069 Sum_probs=174.7
Q ss_pred hhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC--
Q 039757 6 NVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY-- 83 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~-- 83 (415)
+.++.+...+.+.+........++.+|++|++.|++++|+++|++|. ..|+. | |..+|++||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~---~~Gv~--p---d~~tyn~Li~~c~~~~~~~ 78 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR---RNGVQ--L---SQYHYNVLLYVCSLAEAAT 78 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH---HHTCC--C---CHHHHHHHHHHHTTCCCCS
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HcCCC--C---CHhHHHHHHHHHHhCCchh
Confidence 34566666666666333334568999999999999999999999999 99999 9 99999999999998775
Q ss_pred -------CchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHH
Q 039757 84 -------PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLVTWNVMITGLVKWGELEY 152 (415)
Q Consensus 84 -------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~ 152 (415)
++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++
T Consensus 79 ~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 79 ESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp SSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHH
Confidence 467899999999999999999999999999999999999999999974 899999999999999999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHH
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 232 (415)
|.++|++|.+.+ ..||..||+.++.+|++.|++++|.+++++|.+.|..| +..||+.+
T Consensus 159 A~~l~~~M~~~G---------------------~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l 216 (501)
T 4g26_A 159 AYEVDAHMVESE---------------------VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMI 216 (501)
T ss_dssp HHHHHHHHHHTT---------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHH
T ss_pred HHHHHHHHHhcC---------------------CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHH
Confidence 999999998777 78999999999999999999999999999999999888 99999999
Q ss_pred HHHHHhc
Q 039757 233 IDTYAKC 239 (415)
Q Consensus 233 i~~~~~~ 239 (415)
+..|+..
T Consensus 217 ~~~F~s~ 223 (501)
T 4g26_A 217 EEWFKSE 223 (501)
T ss_dssp HHHHHSH
T ss_pred HHHHhcC
Confidence 9998864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-25 Score=204.14 Aligned_cols=350 Identities=8% Similarity=-0.015 Sum_probs=275.1
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 83 (415)
+.......+..+.... ..++.+|..+...+.+.|++++|+.+|+++. ...+. +..+|..+..++...|+
T Consensus 7 ~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l---~~~p~------~~~~~~~l~~~~~~~g~ 75 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAV---DGDPD------NYIAYYRRATVFLAMGK 75 (450)
T ss_dssp ------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCc------cHHHHHHHHHHHHHCCC
Confidence 3344444555555443 2677889999999999999999999999998 55544 78899999999999999
Q ss_pred CchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-h---hhHHHHH------------HHHH
Q 039757 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-L---VTWNVMI------------TGLV 145 (415)
Q Consensus 84 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~li------------~~~~ 145 (415)
++.|...|+.+.+.+ +.+...+..+..+|.+.|++++|...|+.+.+ |+ . ..+..++ ..+.
T Consensus 76 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 76 SKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 45678899999999999999999999999875 33 3 5565554 4488
Q ss_pred hhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC
Q 039757 146 KWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225 (415)
Q Consensus 146 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (415)
+.|++++|...|+++.+.+ +.+...+..+..++...|++++|...++.+.+. .|.+
T Consensus 155 ~~~~~~~A~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 210 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVC----------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDN 210 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSC
T ss_pred HcCCHHHHHHHHHHHHHhC----------------------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 9999999999999986422 335566777888888999999999999999887 4668
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHH------------HHHHHccCchHHHHHHHHHHHhcCCCC
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSI------------ISGFAMHGMGKAAVENFERMQKVGLKP 292 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~g~~p 292 (415)
..++..++.+|...|++++|...|+++....|+ ...+..+ ...+...|++++|...|+++.+. .|
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EP 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 999999999999999999999999999887664 4445554 78899999999999999999884 56
Q ss_pred ChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 293 NRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 293 ~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
+...+... .+..+...+.+.|++++|...++++....| +..+|..+..+|...|++++|...++++.+..
T Consensus 289 ~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 289 SIAEYTVR---------SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp SSHHHHHH---------HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cchHHHHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 64332211 133478889999999999999998765434 67899999999999999999999999999999
Q ss_pred cCCCccHHHHHHH------------HHhcC-----chhhHHHHHHH
Q 039757 372 RGNGGDYVLMYNI------------LAGVG-----RYVDAERLRRV 400 (415)
Q Consensus 372 ~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 400 (415)
|.+...+..+..+ |...| +.+++.+.+++
T Consensus 360 p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9888888888744 33344 45566766665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-24 Score=201.17 Aligned_cols=375 Identities=9% Similarity=-0.081 Sum_probs=262.7
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
.++...|...|...++.. ||+.+|..+...|.+.|++++|+..|+++. ...+. +..+|..+..++...
T Consensus 19 ~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKAL---ELKPD------YSKVLLRRASANEGL 86 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCSC------CHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh---ccChH------HHHHHHHHHHHHHHH
Confidence 467889999999998876 789999999999999999999999999998 66555 778999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHh-----------------------------------
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF----------------------------------- 126 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~----------------------------------- 126 (415)
|++++|...|+.+.+.+ +++......++..+........+.+.+
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999998776 233333333333222211111111111
Q ss_pred ---cccC---------CC-chhhHHHHHHHHHh---hCCHHHHHHHHhhCCC----------------C-ChhHHHHHHH
Q 039757 127 ---DELP---------ER-NLVTWNVMITGLVK---WGELEYARSLFEEMPC----------------R-NVVSWTGILD 173 (415)
Q Consensus 127 ---~~~~---------~~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~----------------~-~~~~~~~li~ 173 (415)
.... +| +...+......+.. .|++++|...|+++.+ | +...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 0000 01 12233333333332 5666666666655433 1 1234555555
Q ss_pred HHHhccCCCCcc--------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 174 GYTRMNRSNGAS--------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 174 ~~~~~~~~~~a~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
.+...|++++|. ..|+...+..+...+...|+++.|...++.+.+. .|.+..++..+..+|...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHHH
Confidence 566666665555 2233666777777788888888888888888876 455777888888888888888888
Q ss_pred HHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCH
Q 039757 246 LKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRL 324 (415)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~ 324 (415)
...|+++....| +...+..+...+...|++++|...++++.+. .|+.... +..+...|...|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-------------~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEV-------------PNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHH-------------HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHH-------------HHHHHHHHHHCCCH
Confidence 888888877644 5667888888888888888888888888764 3332211 22366668888888
Q ss_pred HHHHHHHhcCCCCCc---C----HHHHHHHHHHHhh---cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhH
Q 039757 325 EQAEKIALGIPSEIT---D----VVVRRILLGACSF---HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394 (415)
Q Consensus 325 ~~A~~~~~~~~~~~p---~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 394 (415)
++|...++.+....| + ...+..+...+.. .|++++|...++++.+..|.+..++..++.+|.+.|++++|
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence 888888877654422 2 3377788888888 88888888888888888887888888888888888888888
Q ss_pred HHHHHHHhhhcc
Q 039757 395 ERLRRVMDERNA 406 (415)
Q Consensus 395 ~~~~~~m~~~~~ 406 (415)
...+++..+.+.
T Consensus 469 ~~~~~~a~~~~~ 480 (514)
T 2gw1_A 469 ITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhcc
Confidence 888888776553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=195.33 Aligned_cols=320 Identities=12% Similarity=0.014 Sum_probs=266.1
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITG 143 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 143 (415)
+...+..+...+.+.|+++.|..+|+.+.+.. +.+..++..+..+|...|++++|...|+.+.+ .+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 77889999999999999999999999998874 45788899999999999999999999999875 357789999999
Q ss_pred HHhhCCHHHHHHHHhhCCCCC---h---hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhh
Q 039757 144 LVKWGELEYARSLFEEMPCRN---V---VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~---~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (415)
|.+.|++++|.+.|+++.+.+ . ..+..++..+.. ..+..+...+...|+++.|...++.+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------QRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999987533 2 445555444322 223445566888999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
+. .|.+..++..++.+|.+.|++++|.+.|+++.... .+..++..+..+|...|++++|...|+++... .|+...
T Consensus 171 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 246 (450)
T 2y4t_A 171 EV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR 246 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred Hh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHH
Confidence 87 57689999999999999999999999999998774 46889999999999999999999999999874 566655
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-----VVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
....+...... ..+..+...+.+.|++++|...|+++....|+ ...+..+...+.+.|++++|+..++++.+..
T Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 247 CFAHYKQVKKL-NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44332110000 00122477899999999999999988665454 4478888999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 372 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
|.+..++..++.+|...|++++|...++++.+..
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9899999999999999999999999999998754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-22 Score=189.32 Aligned_cols=356 Identities=9% Similarity=-0.047 Sum_probs=283.1
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
....|..+...+.+.|++++|+..|+++. ...+. +..+|..+..++.+.|++++|.+.++.+.+.. +.+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAI---ELDPN------EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH---hhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchH
Confidence 45678888899999999999999999998 66655 78899999999999999999999999998875 4567
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC-Cchh-----------------------------------------------
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE-RNLV----------------------------------------------- 135 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~----------------------------------------------- 135 (415)
..+..+..++...|++++|...|+.+.. |+..
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence 7888899999999999999998864421 1100
Q ss_pred ----------------------hHHHHHHHHH--------hhCCHHHHHHHHhhCCC--CC--------hhHHHHHHHHH
Q 039757 136 ----------------------TWNVMITGLV--------KWGELEYARSLFEEMPC--RN--------VVSWTGILDGY 175 (415)
Q Consensus 136 ----------------------~~~~li~~~~--------~~g~~~~a~~~~~~m~~--~~--------~~~~~~li~~~ 175 (415)
....+...+. ..|++++|..+|+++.+ |+ ..++..+...+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp SCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH
Confidence 1111111111 12478899999988864 32 22466667778
Q ss_pred HhccCCCCcc--------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039757 176 TRMNRSNGAS--------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALK 247 (415)
Q Consensus 176 ~~~~~~~~a~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 247 (415)
...|++++|. ..|+...+..+...+...|+++.|...++.+.+. .|.+..++..+..++...|++++|.+
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 8888888887 5556778888999999999999999999999987 46688999999999999999999999
Q ss_pred HHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHH
Q 039757 248 LFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQ 326 (415)
Q Consensus 248 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~ 326 (415)
.|+++....| +...+..+...|...|++++|...++++.+. .|+.... +..+...+...|++++
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-------------~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEV-------------PTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHH-------------HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH-------------HHHHHHHHHHhCCHHH
Confidence 9999988755 5678999999999999999999999999886 3544321 2236677899999999
Q ss_pred HHHHHhcCCCCCc-------CHHHHHHHHHHHhhc----------CChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 327 AEKIALGIPSEIT-------DVVVRRILLGACSFH----------GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 327 A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
|...|+++....| ....+......+... |++++|...++++.+..|.+..++..++.+|.+.|
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 9999987654411 222344455667777 99999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhhhcc
Q 039757 390 RYVDAERLRRVMDERNA 406 (415)
Q Consensus 390 ~~~~A~~~~~~m~~~~~ 406 (415)
++++|.+.+++..+...
T Consensus 477 ~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 477 KIDEAIELFEDSAILAR 493 (537)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHhCC
Confidence 99999999999887653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-21 Score=173.99 Aligned_cols=321 Identities=7% Similarity=-0.038 Sum_probs=249.7
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
|+..+..+...+...|++++|+..|+++. ...+. +..++..+...+...|+++.|...++.+.+.. +.+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l---~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAV---DGDPD------NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcc
Confidence 56778889999999999999999999998 65555 78899999999999999999999999998875 3467
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C----chhhHHHH------------HHHHHhhCCHHHHHHHHhhCCCCCh
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R----NLVTWNVM------------ITGLVKWGELEYARSLFEEMPCRNV 165 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~ 165 (415)
..+..+...+...|++++|...|+...+ | +...+..+ ...+...|++++|.+.|+++.+.+
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 150 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC- 150 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 7888899999999999999999998865 4 23344444 577888899999999998875322
Q ss_pred hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 166 VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 166 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
+.+...+..+...+...|++++|...++.+.+. .|.+..++..+...|...|++++|
T Consensus 151 ---------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 151 ---------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred ---------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 234556777777888888999999999988887 566888888899999999999999
Q ss_pred HHHHHHhhhhCCC-hhhHH------------HHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchH
Q 039757 246 LKLFEDISVERKN-LVSWT------------SIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG 312 (415)
Q Consensus 246 ~~~~~~~~~~~~~-~~~~~------------~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 312 (415)
.+.|++.....|+ ...+. .+...+...|++++|...++++.+. .|+...+..-+ +.
T Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~---------~~ 276 (359)
T 3ieg_A 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRS---------KE 276 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH---------HH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHH---------HH
Confidence 9999888876553 33333 2256688888999999999888875 35543321110 22
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
.+...+...|++++|.+.++......| +..++..+...+...|++++|.+.++++.+..|.+...+..+..+....+
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 366678888899999888887765434 66788888888888899999999999988888887777777776665443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=183.85 Aligned_cols=353 Identities=11% Similarity=-0.007 Sum_probs=277.0
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
....|-.....+.+.|++++|+..|+++. ... | +..+|..+..++...|+++.|.+.++.+.+.+ +.+.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~----p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 73 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWAL---ELK----E---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYS 73 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHC----C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHH---hcC----c---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHH
Confidence 45567788899999999999999999998 433 5 88899999999999999999999999999876 4567
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHH-----------------------
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLF----------------------- 157 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~----------------------- 157 (415)
..+..+..+|.+.|++++|...|+.+.+ ++......++..+.+......+.+.+
T Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
T 2gw1_A 74 KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD 153 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh
Confidence 8899999999999999999999998764 23333444444443332222222222
Q ss_pred ---------------hhCC---------CC-ChhHHHHHHHHHHh---ccCCCCcc-------C----------------
Q 039757 158 ---------------EEMP---------CR-NVVSWTGILDGYTR---MNRSNGAS-------T---------------- 186 (415)
Q Consensus 158 ---------------~~m~---------~~-~~~~~~~li~~~~~---~~~~~~a~-------~---------------- 186 (415)
.... .| +...+......+.. .|++++|. .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (514)
T 2gw1_A 154 KQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233 (514)
T ss_dssp ---CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH
T ss_pred hccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC
Confidence 1111 01 12333333443443 66666665 1
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
+.+...+..+...+...|+++.|...++.+.+. .|. ...+..+..+|...|++++|.+.|+++....| +...+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 310 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHH
Confidence 223456778888899999999999999999987 454 88899999999999999999999999988754 67789999
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHH
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVR 344 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 344 (415)
...|...|++++|...++++.+. .|+.... +..+...|...|++++|...++.+....| +..++
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 375 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKEL--DPENIFP-------------YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVP 375 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHT--CSSCSHH-------------HHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--ChhhHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHH
Confidence 99999999999999999999885 3443221 22367779999999999999988765534 56788
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccCCCc------cHHHHHHHHHh---cCchhhHHHHHHHHhhhc
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGG------DYVLMYNILAG---VGRYVDAERLRRVMDERN 405 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~ 405 (415)
..+...+...|++++|...++++.+..+.+.. .+..++.++.. .|++++|...++++.+..
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998888655 89999999999 999999999999988754
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=169.28 Aligned_cols=321 Identities=12% Similarity=0.002 Sum_probs=257.2
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITG 143 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~ 143 (415)
+...+..+...+...|++++|...|+.+.+.. +.+..++..+..++...|++++|...|+.+.+ | +...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 55678889999999999999999999998875 45678888999999999999999999999874 4 56789999999
Q ss_pred HHhhCCHHHHHHHHhhCCCCCh------hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhh
Q 039757 144 LVKWGELEYARSLFEEMPCRNV------VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (415)
+...|++++|...|++..+.++ ..+..+...+. ...+......+...|++++|...++.+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------MQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999999999875332 12222211110 1123344677889999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 218 KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
+. .|.+..++..+..++...|++++|.+.++++....| +..++..+...+...|++++|...|++..+. .|+...
T Consensus 148 ~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~ 223 (359)
T 3ieg_A 148 EV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR 223 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred Hh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchH
Confidence 87 566899999999999999999999999999988754 6788999999999999999999999999875 455443
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCH-----HHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDV-----VVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
....+..... -.....+...+.+.|++++|...++++....|+. ..+..+...+...|++++|...++++.+..
T Consensus 224 ~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 224 CFAHYKQVKK-LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2221111000 0001124667899999999999998876553442 235567788999999999999999999999
Q ss_pred cCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 372 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
|.++.++..++.+|...|++++|.+.+++..+.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 98999999999999999999999999999887653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=178.14 Aligned_cols=353 Identities=10% Similarity=-0.024 Sum_probs=274.4
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL 81 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 81 (415)
.++...|...|...++..+ .++.+|..+...|.+.|++++|++.|+++. ...+. +..++..+...+...
T Consensus 38 ~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKAL---EIKPD------HSKALLRRASANESL 106 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCc------hHHHHHHHHHHHHHc
Confidence 4677888999999887663 467889999999999999999999999999 66655 788999999999999
Q ss_pred CCCchHHHHHHHHHHcCCC-------------------------------------Cchh--------------------
Q 039757 82 SYPNLGTQLHAVISKVGFQ-------------------------------------SHVY-------------------- 104 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~-------------------------------------~~~~-------------------- 104 (415)
|++++|...|+.+ ..... |+..
T Consensus 107 g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 107 GNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp TCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred CCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 9999999999643 21111 0000
Q ss_pred ----------hHHHHHHHHHc--------CCChhHHHHHhcccCC--Cc--------hhhHHHHHHHHHhhCCHHHHHHH
Q 039757 105 ----------VNTALVNMYVS--------LGFLKDSSKLFDELPE--RN--------LVTWNVMITGLVKWGELEYARSL 156 (415)
Q Consensus 105 ----------~~~~li~~~~~--------~g~~~~a~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~a~~~ 156 (415)
....+...+.. .|++++|..+|+.+.+ |+ ..++..+...+...|++++|.+.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 11112222211 1478899999988875 33 23577777888999999999999
Q ss_pred HhhCC--CCChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC
Q 039757 157 FEEMP--CRNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD 225 (415)
Q Consensus 157 ~~~m~--~~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (415)
|++.. .|+...+..+...+...|++++|. .+.+..++..+...+...|++++|...++.+.+. .|.+
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 343 (537)
T 3fp2_A 266 LQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPEN 343 (537)
T ss_dssp HHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCC
Confidence 99987 466778888999999999999988 4456778899999999999999999999999987 4667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
...+..+..+|...|++++|.+.|+++....| +...+..+...+...|++++|...|+++.+.........+.. ..
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~- 420 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI--GP- 420 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT--HH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH--HH-
Confidence 88999999999999999999999999988755 567899999999999999999999999876531111111000 00
Q ss_pred ccCCcchHHHHHHhHhc----------CCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 305 SHGGLHYGCLVDMLGRA----------GRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
+..+...|... |++++|...|+......| +...+..+...|...|++++|.+.|+++.+..|.
T Consensus 421 ------~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 421 ------LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp ------HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred ------HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 11134456667 999999999998766534 5678999999999999999999999999999887
Q ss_pred CCcc
Q 039757 374 NGGD 377 (415)
Q Consensus 374 ~~~~ 377 (415)
+...
T Consensus 495 ~~~~ 498 (537)
T 3fp2_A 495 MDEK 498 (537)
T ss_dssp CHHH
T ss_pred cHHH
Confidence 5544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-19 Score=155.83 Aligned_cols=286 Identities=12% Similarity=-0.020 Sum_probs=195.3
Q ss_pred cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCC
Q 039757 22 LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQS 101 (415)
Q Consensus 22 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 101 (415)
..++..+..+...+...|++++|+++|+++. ...+. +...+..++..+...|++++|..+++.+.+.. +.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l---~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 88 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVM---EKDPF------HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PS 88 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCC------ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cC
Confidence 4566677788888888899999999888888 55544 66677777888888888888988888888764 34
Q ss_pred chhhHHHHHHHHHcCC-ChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 039757 102 HVYVNTALVNMYVSLG-FLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTR 177 (415)
Q Consensus 102 ~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 177 (415)
+...+..+...+...| ++++|...|+...+ .+...|..+...+...|++++|.+.|++..+.+
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 155 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM------------- 155 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------------
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------------
Confidence 6677777888888888 88888888887664 345678888888888888888888888775321
Q ss_pred ccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--
Q 039757 178 MNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-- 255 (415)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 255 (415)
+.+...+..+...+...|++++|...++...+. .|.+..++..+...+...|++++|...|+++...
T Consensus 156 ---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 156 ---------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp ---------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ---------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 112334444566666677777777777777765 4556677777777777777777777777776554
Q ss_pred --------CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHH
Q 039757 256 --------RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327 (415)
Q Consensus 256 --------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A 327 (415)
+.+..++..+..+|...|++++|...+++..+. .|+.... +..+...|.+.|++++|
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~-------------~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNAST-------------YSAIGYIHSLMGNFENA 289 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHH-------------HHHHHHHHHHHTCHHHH
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHH-------------HHHHHHHHHHhccHHHH
Confidence 122456667777777777777777777776654 2332211 22255556667777777
Q ss_pred HHHHhcCCCCCc-CHHHHHHHHHHH-hhcCC
Q 039757 328 EKIALGIPSEIT-DVVVRRILLGAC-SFHGN 356 (415)
Q Consensus 328 ~~~~~~~~~~~p-~~~~~~~l~~~~-~~~~~ 356 (415)
.+.+++.....| +...+..+..++ ...|+
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 777766665534 444555555555 34444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=160.91 Aligned_cols=287 Identities=11% Similarity=-0.039 Sum_probs=240.0
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITG 143 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 143 (415)
+...+..+...+...|+++.|.++++.+.+.. +.+...+..++.++...|++++|..+++++.+ .+...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 77788889999999999999999999998875 45666777788999999999999999998875 357789999999
Q ss_pred HHhhC-CHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 144 LVKWG-ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 144 ~~~~g-~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
+...| ++++|.+.|++..+.+ +.+...+..+...+...|++++|...++.+.+. .
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~ 155 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE----------------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--M 155 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC----------------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--T
T ss_pred HHHhhhhHHHHHHHHHHHHHhC----------------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--c
Confidence 99999 9999999999986533 224556778888889999999999999999987 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC-------CC-
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK-------PN- 293 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-------p~- 293 (415)
|.+...+..+...|...|++++|.+.|+++....| +...+..+...+...|++++|...+++..+..-. |+
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 235 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTC
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHH
Confidence 55778888899999999999999999999988754 6788999999999999999999999998764210 22
Q ss_pred hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 294 RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 294 ~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
... +..+...|...|++++|...+++.....| +...+..+...+...|++++|.+.++++.+..|
T Consensus 236 ~~~--------------~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 236 EPL--------------LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp CHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHH--------------HHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 223 23377779999999999999988765533 567889999999999999999999999999999
Q ss_pred CCCccHHHHHHHHH-hcCchh
Q 039757 373 GNGGDYVLMYNILA-GVGRYV 392 (415)
Q Consensus 373 ~~~~~~~~l~~~~~-~~g~~~ 392 (415)
.+...+..+..++. ..|+.+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC--
T ss_pred CchHHHHHHHHHHHHHhCchh
Confidence 89999999998884 555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=162.73 Aligned_cols=303 Identities=11% Similarity=-0.057 Sum_probs=199.6
Q ss_pred hhcCCChHHHHH-HHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039757 35 YSLADSPKKAFL-LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY 113 (415)
Q Consensus 35 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 113 (415)
+.-.|++++|++ .|++.. ..... .+..+...+..+...+.+.|++++|...|+.+.+.. +.+..++..+..++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~---~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 108 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGY---QFEEE--NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQ 108 (368)
T ss_dssp -----------CHHHHCCC---CCCSS--CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHH---hcCCC--CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334577888887 777655 22222 111145678888888899999999999999988765 45677788888888
Q ss_pred HcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCch
Q 039757 114 VSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190 (415)
Q Consensus 114 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 190 (415)
.+.|++++|...|+.+.+ .+..++..+...+...|++++|.+.|+++...++.. .
T Consensus 109 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------------~ 166 (368)
T 1fch_A 109 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY----------------------A 166 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT----------------------G
T ss_pred HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----------------------H
Confidence 899999999998887764 356788888888889999999998888875322100 0
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC---hhhHHHHHH
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN---LVSWTSIIS 267 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~li~ 267 (415)
..+... +.... . .. ....+..+...+ ..|++++|...|+++....|+ ..++..+..
T Consensus 167 ~~~~~~-------~~~~~----------~--~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 167 HLVTPA-------EEGAG----------G--AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp GGCC-----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred HHHHHH-------HHHhh----------h--hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 000000 00000 0 00 001111222233 667777777777777766444 566777777
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
.|...|++++|...|+++... .|+... .+..+...|...|++++|...|+++....| +..++..
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~--~~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 290 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSV--RPNDYL-------------LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CcCCHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 777778888888777777664 343321 122356667778888888888776654433 5668888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCC-----------CccHHHHHHHHHhcCchhhHHHHHHHH
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGN-----------GGDYVLMYNILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m 401 (415)
+...|...|++++|...++++.+..|.+ ..+|..++.+|...|++++|..++++.
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 8999999999999999999999888776 678999999999999999999887643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-18 Score=146.43 Aligned_cols=196 Identities=11% Similarity=0.071 Sum_probs=94.2
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHH
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~ 270 (415)
.++..+...+...++.++|...++.+...+..|.+...+..+...+...|++++|.+.+++ +.+...+..++..|.
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILL 141 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 3334444444444444444444444444433344444455555555555555555555554 234445555555555
Q ss_pred ccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHH
Q 039757 271 MHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLG 349 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~ 349 (415)
+.|++++|.+.|+++.+. .|+.... .+..+ ++..+...|++++|..+|+++....| +...++.+..
T Consensus 142 ~~g~~~~A~~~l~~~~~~--~p~~~~~-~l~~a----------~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 142 KLDRLDLARKELKKMQDQ--DEDATLT-QLATA----------WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHH----------HHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhh--CcCcHHH-HHHHH----------HHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 555555555555555543 2333211 11111 22223334555555555555443322 3445555555
Q ss_pred HHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh-HHHHHHHHhh
Q 039757 350 ACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD-AERLRRVMDE 403 (415)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 403 (415)
++...|++++|...++++++..|.++.++..++..+...|+.++ +.++++++.+
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555543 3445554443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=154.55 Aligned_cols=285 Identities=14% Similarity=0.082 Sum_probs=136.6
Q ss_pred chhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC
Q 039757 4 SNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 83 (415)
+.+.|.++++.+ +++.+|..+..++.+.|++++|++.|.+.. |..+|..++..+...|+
T Consensus 18 ~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika~--------------D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 18 NLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------------DPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcCC--------------CHHHHHHHHHHHHhCCC
Confidence 455666666665 445699999999999999999999997653 77799999999999999
Q ss_pred CchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCC
Q 039757 84 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR 163 (415)
Q Consensus 84 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 163 (415)
+++|..+++..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 99999988887764 45678899999999999999999988864 77789999999999999999999999988
Q ss_pred ChhHHHHHHHHHHhccCCCCcc----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc
Q 039757 164 NVVSWTGILDGYTRMNRSNGAS----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC 239 (415)
Q Consensus 164 ~~~~~~~li~~~~~~~~~~~a~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 239 (415)
..|..++.++.+.|++++|. ...+..+|..++.+|...|+++.|......+.. .+.-...++..|.+.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~------~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDR 220 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT------CHHHHHHHHHHHHHT
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHh------CHhhHHHHHHHHHHC
Confidence 47999999999999999988 334788999999999999999999776655331 444455799999999
Q ss_pred CCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHh
Q 039757 240 GCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDML 318 (415)
Q Consensus 240 g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~ 318 (415)
|++++|..+++...... .....|+-|.-.|++-+ +++..+.++... +..-...++++|.+. ..|..++..|
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p~k~~ehl~~~~------~~ini~k~~~~~~~~-~~w~e~~~ly 292 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFW------SRVNIPKVLRAAEQA-HLWAELVFLY 292 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS------TTSCHHHHHHHHHTT-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH------HHhcCcHHHHHHHHH-HHHHHHHHHH
Confidence 99999999999987763 35567888877777653 444444444332 234445566666543 3577899999
Q ss_pred HhcCCHHHHHHHHhc
Q 039757 319 GRAGRLEQAEKIALG 333 (415)
Q Consensus 319 ~~~g~~~~A~~~~~~ 333 (415)
...++++.|....-+
T Consensus 293 ~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 293 DKYEEYDNAIITMMN 307 (449)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HhhchHHHHHHHHHh
Confidence 999999999876543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-17 Score=153.11 Aligned_cols=370 Identities=8% Similarity=-0.066 Sum_probs=227.4
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhc--CCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcC
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTH--SHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG 98 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 98 (415)
.......||.+...+...|++++|++.|++..++... +....|. ...+|+.+...+...|++++|...+++..+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~--~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR--SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT--THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 3344668999999999999999999999988753221 1110021 45689999999999999999999999886531
Q ss_pred ------CC-CchhhHHHHHHHHHc--CCChhHHHHHhcccCC--C-chhhHHHHHHH---HHhhCCHHHHHHHHhhCCC-
Q 039757 99 ------FQ-SHVYVNTALVNMYVS--LGFLKDSSKLFDELPE--R-NLVTWNVMITG---LVKWGELEYARSLFEEMPC- 162 (415)
Q Consensus 99 ------~~-~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~- 162 (415)
.. ....++..+..++.. .+++++|+..|++..+ | ++..+..+..+ +...++.++|++.|++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 11 123456555555554 4579999999998764 4 34455555544 3456777888888877652
Q ss_pred --CChhHHHHHHHHHHhcc----CCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 163 --RNVVSWTGILDGYTRMN----RSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 163 --~~~~~~~~li~~~~~~~----~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
.+...+..+...+...+ +.++|. .+.+...+..+...+...|+++.|...+.+..+. .|.+..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 34455555555554443 334443 3445566777777888888888888888888776 466777
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 228 VSNCLIDTYAKC-------------------GCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 228 ~~~~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
++..+..+|... +..+.|...|++.....| +..++..+...|...|++++|...|++..+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 777776665432 234566777777666544 456677888888888888888888888776
Q ss_pred cCCCCChhhHHHHHHHHccCCcchHHHHH-HhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 039757 288 VGLKPNRVTFLSVLNACSHGGLHYGCLVD-MLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRK 366 (415)
Q Consensus 288 ~g~~p~~~~~~~ll~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (415)
.. |+......+... +.. .+...|+.++|+..|++.....|+..... +....+.+++++
T Consensus 363 ~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~ 421 (472)
T 4g1t_A 363 KE--LTPVAKQLLHLR----------YGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKM 421 (472)
T ss_dssp SC--CCHHHHHHHHHH----------HHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHH
T ss_pred cC--CCChHHHHHHHH----------HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHH
Confidence 53 333221111111 111 23456788888888776554434433222 223445566777
Q ss_pred HHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCCCCCCC
Q 039757 367 VLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNALKFPGRSLV 415 (415)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 415 (415)
..+.+|.++.+|..++.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 422 ~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 7778888999999999999999999999999999999887776777764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=144.93 Aligned_cols=274 Identities=9% Similarity=-0.037 Sum_probs=214.7
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCch--hhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHV--YVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEY 152 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 152 (415)
++.....|+++.|+..++..... .|+. .....+..+|...|+++.|+..++....|+..++..+...+...|+.++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHH
Confidence 45566789999999988876443 4443 4556678999999999999999988655677889999999999999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHH
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC 231 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 231 (415)
|++.++++...+ ..| +...+..+...+...|++++|...++. |.+...+..
T Consensus 84 A~~~l~~ll~~~---------------------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~ 135 (291)
T 3mkr_A 84 IVAELDREMSRS---------------------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAM 135 (291)
T ss_dssp HHHHHHHHHHSC---------------------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHH
T ss_pred HHHHHHHHHhcc---------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHH
Confidence 999999875321 112 344556666788899999999999987 458899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhhCCChhhH---HHHHHHHHccCchHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHccC
Q 039757 232 LIDTYAKCGCIFSALKLFEDISVERKNLVSW---TSIISGFAMHGMGKAAVENFERMQKVGLKPN-RVTFLSVLNACSHG 307 (415)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 307 (415)
++..|.+.|++++|.+.|+++....|+.... ..++..+...|++++|..+|+++.+. .|+ ...++
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~--------- 204 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLN--------- 204 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHH---------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHH---------
Confidence 9999999999999999999999876664322 22334455669999999999999986 444 33333
Q ss_pred CcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHH-HHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 308 GLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEM-GERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
.+...+.+.|++++|...|++.....| +..++..++..+...|+.++ +.++++++.+..|.++. +.+..
T Consensus 205 -----~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~ 275 (291)
T 3mkr_A 205 -----GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYR 275 (291)
T ss_dssp -----HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHH
T ss_pred -----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHH
Confidence 367779999999999999998776645 67789999999999999876 67999999999998774 34556
Q ss_pred HhcCchhhHHHHH
Q 039757 386 AGVGRYVDAERLR 398 (415)
Q Consensus 386 ~~~g~~~~A~~~~ 398 (415)
.+.+.++++..-|
T Consensus 276 ~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 276 AKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6777777776544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-16 Score=145.99 Aligned_cols=344 Identities=13% Similarity=-0.000 Sum_probs=271.1
Q ss_pred hHHHHHHHHHHhhc----CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh----cCCCchHHHHHHHHH
Q 039757 24 HTLLFNTLLHFYSL----ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT----LSYPNLGTQLHAVIS 95 (415)
Q Consensus 24 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 95 (415)
++.++..+...|.. .+++++|+..|++.. ..| +...+..|...+.. .+++++|.+.|++..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~---~~~--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 106 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAA---EQG--------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA 106 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---HTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH---HCC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 56777777777877 889999999999887 432 56678888888888 888999999999988
Q ss_pred HcCCCCchhhHHHHHHHHHc----CCChhHHHHHhcccCC-CchhhHHHHHHHHHh----hCCHHHHHHHHhhCCC-CCh
Q 039757 96 KVGFQSHVYVNTALVNMYVS----LGFLKDSSKLFDELPE-RNLVTWNVMITGLVK----WGELEYARSLFEEMPC-RNV 165 (415)
Q Consensus 96 ~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~-~~~ 165 (415)
+.| +...+..|...|.. .+++++|...|+...+ .+...+..|...|.. .+++++|++.|++..+ .+.
T Consensus 107 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~ 183 (490)
T 2xm6_A 107 LKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNV 183 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 765 44556667777777 7889999999988765 456678888888877 7889999999987653 466
Q ss_pred hHHHHHHHHHHh----ccCCCCcc-------CCCchHHHHhHHHHHhh----cCChhHHHHHHhhhhhcCCCCCCHHHHH
Q 039757 166 VSWTGILDGYTR----MNRSNGAS-------TEPSEITILAVLPAIWQ----NGAVRNCQLIHGYGEKRGFNAFDIRVSN 230 (415)
Q Consensus 166 ~~~~~li~~~~~----~~~~~~a~-------~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (415)
..+..+...|.. .++.++|. ...+...+..+...+.. .++.++|...|+...+.| +...+.
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~ 259 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHH
Confidence 677777777776 56665555 33455666677777765 789999999999998875 667778
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHcc-----CchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 231 CLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAMH-----GMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 231 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
.+..+|.. .+++++|.+.|++..+. .+...+..+...|... +++++|...|++..+.|. ...+.
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~--- 332 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---ATAQA--- 332 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HHHHH---
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HHHHH---
Confidence 88888888 89999999999998764 4566777888888877 899999999999988642 22222
Q ss_pred HHHccCCcchHHHHHHhHhcC---CHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh----cCChHHHHHHHHHHHHcccCC
Q 039757 302 NACSHGGLHYGCLVDMLGRAG---RLEQAEKIALGIPSEITDVVVRRILLGACSF----HGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 374 (415)
.+...|...| +.++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +
T Consensus 333 -----------~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~ 398 (490)
T 2xm6_A 333 -----------NLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L 398 (490)
T ss_dssp -----------HHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred -----------HHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C
Confidence 2555566555 789999999877665 577888888888888 899999999999998865 5
Q ss_pred CccHHHHHHHHHh----cCchhhHHHHHHHHhhhcc
Q 039757 375 GGDYVLMYNILAG----VGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 375 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 406 (415)
+..+..|...|.. .+++++|...+++..+.+.
T Consensus 399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7788899999998 8999999999999988873
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-18 Score=153.51 Aligned_cols=263 Identities=11% Similarity=-0.037 Sum_probs=217.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
+...+..+...+.+.|++++|+..|+++. ...+. +..++..+...+...|+++.|...++.+.+.. +.+.
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 132 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAV---QQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQ 132 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHH---HSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCH
Confidence 45678899999999999999999999999 66555 78899999999999999999999999998876 4578
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hhhHHH---------------HHHHHHhhCCHHHHHHHHhhCCCCCh
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LVTWNV---------------MITGLVKWGELEYARSLFEEMPCRNV 165 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~~~ 165 (415)
.++..+..+|...|++++|...|+.+.+ |+ ...+.. .+..+...|++++|...|+++.+.++
T Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 212 (368)
T 1fch_A 133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCc
Confidence 8899999999999999999999998764 22 222221 23344489999999999999864221
Q ss_pred hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 166 VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 166 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
..++..++..+...+...|++++|...++.+.+. .|.+..++..+..+|...|++++|
T Consensus 213 --------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 213 --------------------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp --------------------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 1124677888888899999999999999999987 566889999999999999999999
Q ss_pred HHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh------------hhHHHHHHHHccCCcchH
Q 039757 246 LKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR------------VTFLSVLNACSHGGLHYG 312 (415)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~------------~~~~~ll~~~~~~~~~~~ 312 (415)
.+.|+++....| +...+..+..+|...|++++|...|+++... .|+. .. |.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~--------------~~ 334 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENI--------------WS 334 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHH--------------HH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHH--------------HH
Confidence 999999988755 5778999999999999999999999998774 2322 23 33
Q ss_pred HHHHHhHhcCCHHHHHHHHhcC
Q 039757 313 CLVDMLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~ 334 (415)
.+...|...|+.++|..++++.
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHhCChHhHHHhHHHH
Confidence 4777899999999999988743
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-18 Score=153.49 Aligned_cols=277 Identities=13% Similarity=-0.034 Sum_probs=212.2
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
+...|..+...+.+.|++++|+.+|+++. ...+. +..+|..+...+...|++++|...|+.+.+.. +.+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 133 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAI---LQDPG------DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNL 133 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 44568888999999999999999999998 55555 78899999999999999999999999998875 4567
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-----------hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHH
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--RN-----------LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTG 170 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 170 (415)
.++..+..+|...|++++|...|+++.+ |+ ...+..+...+.+.|++++|.+.|+++.+.++
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----- 208 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG----- 208 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC-----
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-----
Confidence 8888999999999999999999998865 22 12234457888899999999999998864221
Q ss_pred HHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 171 li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
...+...+..+...+...|++++|...++.+.+. .|.+..++..+..+|...|++++|.+.|+
T Consensus 209 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 209 ---------------DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp ---------------SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1225667888888899999999999999999987 57689999999999999999999999999
Q ss_pred HhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH
Q 039757 251 DISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK 329 (415)
Q Consensus 251 ~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (415)
++....| +..++..+..+|...|++++|...|+++.+. .|+...-... .........|..+...+...|+.+.+.+
T Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 272 RALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQV-PHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC-------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCccc-chhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 9988755 5788999999999999999999999998874 2221110000 0000001124457778999999999999
Q ss_pred HHhcCC
Q 039757 330 IALGIP 335 (415)
Q Consensus 330 ~~~~~~ 335 (415)
+.++-.
T Consensus 349 ~~~~~l 354 (365)
T 4eqf_A 349 ANLGDL 354 (365)
T ss_dssp HHTTCC
T ss_pred HHHhhH
Confidence 887643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=154.60 Aligned_cols=270 Identities=10% Similarity=-0.044 Sum_probs=181.2
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITG 143 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 143 (415)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|+..|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34456667777777777777777777776654 34566666677777777777777777776653 245566677777
Q ss_pred HHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC
Q 039757 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (415)
|...|++++|.+.|+++.+.++. +...+..+ .
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~----------------------~~~~~~~~--------------------------~ 174 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK----------------------YKYLVKNK--------------------------K 174 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH----------------------HHCC-------------------------------
T ss_pred HHccccHHHHHHHHHHHHHhCcc----------------------chHHHhhh--------------------------c
Confidence 77777777777777666431100 00000000 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK---NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
.....+..+...+...|++++|.+.|+++....| +..++..+...|...|++++|...|+++.+. .|+...
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~---- 248 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYS---- 248 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH----
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH----
Confidence 0233445567788888888888888888877754 4677888888888888888888888888775 344322
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC------
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG------ 373 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 373 (415)
.+..+...|...|++++|...|++.....| +..++..+..+|...|++++|...++++.+..|.
T Consensus 249 ---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 319 (365)
T 4eqf_A 249 ---------LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319 (365)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcc
Confidence 133366678888888888888887665534 4678888999999999999999999999988865
Q ss_pred ------CCccHHHHHHHHHhcCchhhHHHHHHH
Q 039757 374 ------NGGDYVLMYNILAGVGRYVDAERLRRV 400 (415)
Q Consensus 374 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 400 (415)
+..+|..+..++...|+.+.+..+.++
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 320 VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 357788999999999999999887765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=146.63 Aligned_cols=264 Identities=10% Similarity=-0.100 Sum_probs=216.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
+...|-.+...+...|++++|..+|+++. ...+. +..++..+...+...|+++.|.+.++.+.+.. +.+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 89 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVC---QAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDI 89 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCH
Confidence 55567788899999999999999999998 65555 78889999999999999999999999998875 4577
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHH--------------HH-HHHhhCCHHHHHHHHhhCCCCCh
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVM--------------IT-GLVKWGELEYARSLFEEMPCRNV 165 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~ 165 (415)
.++..+...+...|++++|.+.++.+.+ | +...+..+ .. .+...|++++|.+.++++.+.+
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 168 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN- 168 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-
Confidence 8888899999999999999999998764 2 22333333 22 3778899999999999886422
Q ss_pred hHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 166 VSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 166 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
+.+...+..+...+...|++++|...++.+.+. .|.+..++..+..++...|++++|
T Consensus 169 ---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 169 ---------------------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 234567778888889999999999999999987 566889999999999999999999
Q ss_pred HHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC-------------hhhHHHHHHHHccCCcch
Q 039757 246 LKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN-------------RVTFLSVLNACSHGGLHY 311 (415)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-------------~~~~~~ll~~~~~~~~~~ 311 (415)
.+.|+++....| +...+..+..+|...|++++|...++++... .|+ ... +
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~--------------~ 289 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSM--------------W 289 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHH--------------H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHH--------------H
Confidence 999999888755 5778999999999999999999999998875 343 222 3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
..+...+.+.|+.++|..+++.....
T Consensus 290 ~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 290 DFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34777899999999999999876543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-16 Score=145.41 Aligned_cols=359 Identities=9% Similarity=-0.025 Sum_probs=280.6
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhc----CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSL----ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT 77 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~ 77 (415)
+++...|...|....+.| ++..+..+...|.. .+++++|++.|++.. ..| +...+..|...
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~---~~~--------~~~a~~~Lg~~ 120 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA---LKG--------LPQAQQNLGVM 120 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---HTT--------CHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---HCC--------CHHHHHHHHHH
Confidence 578888999999888765 46678888888988 899999999999998 433 56677888888
Q ss_pred HHh----cCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHc----CCChhHHHHHhcccCC-CchhhHHHHHHHHHh--
Q 039757 78 CVT----LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS----LGFLKDSSKLFDELPE-RNLVTWNVMITGLVK-- 146 (415)
Q Consensus 78 ~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~-- 146 (415)
+.. .+++++|...|+...+.| +...+..|...|.. .++.++|.+.|+...+ .+...+..+...|..
T Consensus 121 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 121 YHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 888 789999999999998876 45566677777876 7899999999998765 567788889888888
Q ss_pred --hCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----ccCCCCcc-------CCCchHHHHhHHHHHhh----cCChhH
Q 039757 147 --WGELEYARSLFEEMPC-RNVVSWTGILDGYTR----MNRSNGAS-------TEPSEITILAVLPAIWQ----NGAVRN 208 (415)
Q Consensus 147 --~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~-------~~~~~~~~~~ll~~~~~----~~~~~~ 208 (415)
.++.++|.+.|++..+ .+...+..+...|.. .++.++|. ...+...+..+...+.. .++.++
T Consensus 198 g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 8999999999998764 456677777777775 55555555 34455566667777776 899999
Q ss_pred HHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccC---chHHHHH
Q 039757 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC-----GCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKAAVE 280 (415)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~ 280 (415)
|...|+...+.| ++..+..|...|... +++++|...|++..+. .+...+..+...|...| ++++|..
T Consensus 278 A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 278 ALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-GDATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 999999998775 677888899999887 8999999999998875 45667888888888766 8899999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh----cCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh---
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR----AGRLEQAEKIALGIPSEITDVVVRRILLGACSF--- 353 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~--- 353 (415)
+|++..+.| +...+.. |...|.. .++.++|.+.|+...+. .+...+..|...|..
T Consensus 353 ~~~~a~~~~---~~~a~~~--------------Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 353 WFRKAAAKG---EKAAQFN--------------LGNALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHHHHTT---CHHHHHH--------------HHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHCC---CHHHHHH--------------HHHHHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCC
Confidence 999998863 3333322 5666777 89999999999887665 467788888888887
Q ss_pred -cCChHHHHHHHHHHHHcccC---CCccHHHHHHHHHhcCchh--hHHHHHHHH
Q 039757 354 -HGNVEMGERVTRKVLEMERG---NGGDYVLMYNILAGVGRYV--DAERLRRVM 401 (415)
Q Consensus 354 -~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~--~A~~~~~~m 401 (415)
.++.++|...|++..+.++. ++.....+...+....... .|.+++++.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 89999999999999999953 5556666655554432222 255555554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-16 Score=147.12 Aligned_cols=182 Identities=8% Similarity=-0.091 Sum_probs=113.9
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-h-hhHHHHHHHHHccCchHHHHHHHHHH
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-L-VSWTSIISGFAMHGMGKAAVENFERM 285 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~li~~~~~~~~~~~A~~~~~~m 285 (415)
+|..+++...+. ..|.+...|..++..+.+.|++++|..+|+++...+|+ . ..|..++..+.+.|++++|..+|++.
T Consensus 304 ~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 304 EAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 666677666652 13546666777777777777777777777776665443 2 35666666666667777777777776
Q ss_pred HhcCCCCCh-hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHH
Q 039757 286 QKVGLKPNR-VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERV 363 (415)
Q Consensus 286 ~~~g~~p~~-~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 363 (415)
.+. .|+. ..|.. .+ ++ .+...|+.++|..+|+......| +...|..++..+.+.|+.++|..+
T Consensus 383 l~~--~~~~~~~~~~--~a----------~~-~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 383 RED--ARTRHHVYVT--AA----------LM-EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HTC--TTCCTHHHHH--HH----------HH-HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred Hhc--cCCchHHHHH--HH----------HH-HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 653 2221 11110 00 11 12356777788777776655434 456777777777777888888888
Q ss_pred HHHHHHcccCCCc----cHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 364 TRKVLEMERGNGG----DYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 364 ~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
|+++....+.++. .|...+......|+.+.+..+.+++.+.-
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8887776554433 56666766777777777777777765543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-18 Score=149.35 Aligned_cols=276 Identities=11% Similarity=-0.035 Sum_probs=189.4
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITG 143 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 143 (415)
+...+..+...+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45566777888888888888888888887764 34667777788888888888888888887764 356677788888
Q ss_pred HHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC
Q 039757 144 LVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA 223 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (415)
+...|++++|.+.|+++.+.++ .+...+..+... .+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~----------------------~~~~~~~~~~~~----------------------~~ 134 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP----------------------QYEQLGSVNLQA----------------------DV 134 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST----------------------TTTTC-------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC----------------------ccHHHHHHHhHH----------------------HH
Confidence 8888888888888887753221 001111111000 00
Q ss_pred CCHHHHHHH-HH-HHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 224 FDIRVSNCL-ID-TYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 224 ~~~~~~~~l-i~-~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
+......+ .. .+...|++++|.+.++++....| +...+..+...|...|++++|...++++.+. .|+....
T Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~--- 208 (327)
T 3cv0_A 135 -DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQL--- 208 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH---
T ss_pred -HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH---
Confidence 01111112 22 35666777777777777766644 5666777777777788888888888777664 3432211
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC------
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG------ 373 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 373 (415)
+..+...|...|++++|...++++....| +..++..+...+...|++++|.+.++++.+..|.
T Consensus 209 ----------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 209 ----------WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp ----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred ----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 22355667778888888888776654433 5667888888899999999999999999988887
Q ss_pred ------CCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 374 ------NGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 374 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
+...+..++.++.+.|++++|..++++..+
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 567888999999999999999998876544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=152.55 Aligned_cols=278 Identities=10% Similarity=0.025 Sum_probs=129.7
Q ss_pred hcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
+.|++++|.++++++ ++..+|..|+.++.+.|++++|++.|... +|..+|..++..+...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 557788898888887 22348888999999999999999998664 5667889999999999999999997776
Q ss_pred CCC--CChhHHHHHHHHHHhccCCCCcc---CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH
Q 039757 160 MPC--RNVVSWTGILDGYTRMNRSNGAS---TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234 (415)
Q Consensus 160 m~~--~~~~~~~~li~~~~~~~~~~~a~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 234 (415)
..+ +++.+.+.++.+|.+.|+++++. ..|+..++..+...|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~ 156 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLAS 156 (449)
T ss_dssp ----------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT----------TCHHHHHH
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHH
Confidence 653 45577888888999988888776 5677779999999999999999999999976 46889999
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHH
Q 039757 235 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCL 314 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~l 314 (415)
++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. +.|+. .. .+
T Consensus 157 ~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~--------------~l 213 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LE--------------EL 213 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HH--------------HH
T ss_pred HHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HH--------------HH
Confidence 999999999999999988 478999999999999999999965554322 33443 22 26
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhc--CChHHHHHHHHHHHHccc-----CCCccHHHHHHHHH
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFH--GNVEMGERVTRKVLEMER-----GNGGDYVLMYNILA 386 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~ 386 (415)
+..|.+.|++++|..+++..... .-....|+-|.-+|++- ++..+.++.|..-....+ .+...|..++-.|.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 77799999999999999877655 33556777777766654 344455555443333333 36789999999999
Q ss_pred hcCchhhHHHHH
Q 039757 387 GVGRYVDAERLR 398 (415)
Q Consensus 387 ~~g~~~~A~~~~ 398 (415)
..++++.|....
T Consensus 294 ~~~e~d~A~~tm 305 (449)
T 1b89_A 294 KYEEYDNAIITM 305 (449)
T ss_dssp HTTCHHHHHHHH
T ss_pred hhchHHHHHHHH
Confidence 999999988754
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-18 Score=164.90 Aligned_cols=152 Identities=8% Similarity=-0.019 Sum_probs=126.3
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
--..+||++|++|++.|++++|.++|+.|.++...|+. | |..|||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~--P---dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL--L---TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT--C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC--C---CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 34568999999999999999999999998754456888 8 999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCCh-hHHHHHhcccCC----CchhhHHHHHHHHHhhCCHHHHHHHHhhCCC-----CChhHHHHHH
Q 039757 103 VYVNTALVNMYVSLGFL-KDSSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFEEMPC-----RNVVSWTGIL 172 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~-~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li 172 (415)
..|||++|+++++.|+. ++|.++|++|.+ ||..+|+.++.+..+.+-++.+.++...+.. +.+.+...|.
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 99999999999999985 789999999974 9999999999888877666555555544442 1133444455
Q ss_pred HHHHhcc
Q 039757 173 DGYTRMN 179 (415)
Q Consensus 173 ~~~~~~~ 179 (415)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-14 Score=140.79 Aligned_cols=338 Identities=13% Similarity=0.085 Sum_probs=232.5
Q ss_pred hhHHHHHHhHhhccC-CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCC
Q 039757 6 NVTTRIHSHLLTTNS-LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP 84 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 84 (415)
+.-+++.+|...... -.-|+.--...+++|+..|++.+|++++++.. ..+ + +.+-+...-+.++....+. +.
T Consensus 965 ~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKiv---l~~-s--~fs~n~~LqnlLi~tAIka-D~ 1037 (1630)
T 1xi4_A 965 PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIV---LDN-S--VFSEHRNLQNLLILTAIKA-DR 1037 (1630)
T ss_pred HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH---cCC-C--cccccHHHHHHHHHHHHHh-Ch
Confidence 344566666544331 12333444678899999999999999999998 332 1 1111556667778777777 56
Q ss_pred chHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 85 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
.+..++.+.+... + ..-+...+...|.+++|..+|++.... ....+.++. ..|++++|.++.++.. +
T Consensus 1038 ~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~~-~~A~~VLie---~i~nldrAiE~Aervn--~ 1104 (1630)
T 1xi4_A 1038 TRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDVN-TSAVQVLIE---HIGNLDRAYEFAERCN--E 1104 (1630)
T ss_pred hhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHHH---HHhhHHHHHHHHHhcC--C
Confidence 7777777766422 1 223667788899999999999998532 222233332 7788999999998774 4
Q ss_pred hhHHHHHHHHHHhccCCCCcc----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC
Q 039757 165 VVSWTGILDGYTRMNRSNGAS----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG 240 (415)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~a~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 240 (415)
..+|..+..++...|++++|. ..-+...|..++.++.+.|+++++.+.+....+.. + ++.+.+.++.+|++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~-e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--R-ESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--c-cccccHHHHHHHHhhc
Confidence 667889999999999999987 45667788889999999999999999998877763 2 4444556889999999
Q ss_pred CHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh
Q 039757 241 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR 320 (415)
Q Consensus 241 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~ 320 (415)
++++...+. .+++...|..+...|...|++++|..+|... ..|. .+...|.+
T Consensus 1182 rleele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~--------------rLA~tLvk 1233 (1630)
T 1xi4_A 1182 RLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG--------------RLASTLVH 1233 (1630)
T ss_pred CHHHHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH--------------HHHHHHHH
Confidence 888654443 1266677778889999999999999999884 1333 36666778
Q ss_pred cCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHH
Q 039757 321 AGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRV 400 (415)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 400 (415)
.|++++|.+.+++.. +..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.
T Consensus 1234 Lge~q~AIEaarKA~----n~~aWkev~~acve~~Ef~LA~~cgl~I----iv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKAN----STRTWKEVCFACVDGKEFRLAQMCGLHI----VVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred hCCHHHHHHHHHHhC----CHHHHHHHHHHHhhhhHHHHHHHHHHhh----hcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887663 4466666666666666666665544321 12344555666666666666666666655
Q ss_pred Hh
Q 039757 401 MD 402 (415)
Q Consensus 401 m~ 402 (415)
..
T Consensus 1306 aL 1307 (1630)
T 1xi4_A 1306 AL 1307 (1630)
T ss_pred Hh
Confidence 43
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=159.14 Aligned_cols=117 Identities=11% Similarity=0.127 Sum_probs=105.5
Q ss_pred CCCchHHHHhHHHHHhhcCChhHHHHHHhhhh---hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--CCChh
Q 039757 186 TEPSEITILAVLPAIWQNGAVRNCQLIHGYGE---KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLV 260 (415)
Q Consensus 186 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 260 (415)
......||++++.+|++.|++++|..+|..|. ..|+.| |..+||+||++||+.|++++|.++|++|.+. .||+.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 44556789999999999999999999998876 456666 9999999999999999999999999999988 59999
Q ss_pred hHHHHHHHHHccCch-HHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 261 SWTSIISGFAMHGMG-KAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 261 ~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
|||+||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 999999999999984 7899999999999999999999975544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.3e-16 Score=127.35 Aligned_cols=200 Identities=16% Similarity=0.069 Sum_probs=160.3
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
+++...+..+...+.+.|++++|...|+...+. .|.+...+..+..++...|++++|...|++.....| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 455667888888999999999999999999987 687999999999999999999999999999988866 56789999
Q ss_pred HHHHHcc-----------CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcC
Q 039757 266 ISGFAMH-----------GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 266 i~~~~~~-----------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (415)
..++... |++++|...|++..+. .|+.... +..+...|...|++++|+..|++.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~-------------~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPL-------------HLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHH-------------HHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999 9999999999999885 5665432 223667799999999999999876
Q ss_pred CCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 335 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
.....+...+..+..++...|++++|+..++++.+..|.++..+..++.++.+.|++++|...+++...
T Consensus 145 l~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 145 LALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 443246778899999999999999999999999999999999999999999999999999999987654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-14 Score=140.03 Aligned_cols=347 Identities=11% Similarity=0.074 Sum_probs=238.2
Q ss_pred CCchhhHHHHHHhHhhccC-CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 2 PSSNNVTTRIHSHLLTTNS-LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
.++|..|..+++.+.-.+. +.-+....+.++....+. +..+..+..++.. ......+...+..
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd---------------~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD---------------NYDAPDIANIAIS 1061 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh---------------hccHHHHHHHHHh
Confidence 5778889999998874443 345567777788777777 5566666666653 1113446777888
Q ss_pred cCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhC
Q 039757 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160 (415)
Q Consensus 81 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (415)
.|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 888888888888751 11222233322 6678888888888763 4567888888888888888888888665
Q ss_pred CCCChhHHHHHHHHHHhccCCCCcc--------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHH
Q 039757 161 PCRNVVSWTGILDGYTRMNRSNGAS--------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232 (415)
Q Consensus 161 ~~~~~~~~~~li~~~~~~~~~~~a~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 232 (415)
.|...|..++.++.+.|++++|. ..++....+.+..+|++.++++....+. + .++...+..+
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQV 1201 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHH
Confidence 56667777888888888888877 2222233445777788888777544442 1 2255566678
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc---
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--- 309 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--- 309 (415)
...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. -+..+|.-+-.+|...+.
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 88888888888888888775 35888888888888888888888776 234555555555433332
Q ss_pred -------------chHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhc--CChHHHHHHHHHHHHccc-
Q 039757 310 -------------HYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFH--GNVEMGERVTRKVLEMER- 372 (415)
Q Consensus 310 -------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~- 372 (415)
.+..++..|.+.|.+++|+++++......| ....|+-|...+.+. ++..++.++|..-....+
T Consensus 1269 A~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~ 1348 (1630)
T 1xi4_A 1269 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348 (1630)
T ss_pred HHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH
Confidence 456788889999999999999987765523 344666666666553 445555555554433322
Q ss_pred ----CCCccHHHHHHHHHhcCchhhHHHH
Q 039757 373 ----GNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 373 ----~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
.+...|..++-.|.+.|+++.|...
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 2567899999999999999999843
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-15 Score=129.81 Aligned_cols=239 Identities=8% Similarity=-0.186 Sum_probs=166.3
Q ss_pred CChhHHHHHhcccCCC-------chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCc
Q 039757 117 GFLKDSSKLFDELPER-------NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPS 189 (415)
Q Consensus 117 g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 189 (415)
|++++|+..|+++.+. +..+|..+...+...|++++|.+.|++..+.+ +.+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------------~~~ 76 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----------------------PDM 76 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------CCC
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----------------------CCc
Confidence 4455555555544431 23455556666666666666666666554211 123
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 269 (415)
...+..+...+...|++++|...++.+.+. .|.+..++..+..+|...|++++|.+.|+++....|+.......+..+
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 344555555666666666666666666665 455788999999999999999999999999988767665555566666
Q ss_pred HccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-----HHHH
Q 039757 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-----VVVR 344 (415)
Q Consensus 270 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~ 344 (415)
...|++++|...+++..... .++...+. ++..+...++.++|.+.++......|. ..++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKS-DKEQWGWN---------------IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 218 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHS-CCCSTHHH---------------HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CcchHHHH---------------HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHH
Confidence 77799999999998877652 23333222 444577788889999999888776332 5688
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHH
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLR 398 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 398 (415)
..+...+...|++++|...++++.+..|.+.. ....++...|++++|.+.+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 89999999999999999999999998876543 4466788899999998876
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-14 Score=134.60 Aligned_cols=182 Identities=8% Similarity=-0.060 Sum_probs=146.6
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHhhh-hCC-ChhhHHHHHHHHHc
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK-------CGCIF-------SALKLFEDISV-ERK-NLVSWTSIISGFAM 271 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~-~~~-~~~~~~~li~~~~~ 271 (415)
.+..+|++.+.. .|.++.+|..++..+.. .|+++ +|..+|++... ..| +...|..++..+.+
T Consensus 256 ~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 667788888886 57789999999988876 68987 99999999986 344 67889999999999
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHH
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGA 350 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 350 (415)
.|++++|..+|+++.+. .|+..+. .|..++..+.+.|++++|.++|++.....|. ...|......
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~------------~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTL------------VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchH------------HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 99999999999999984 5654321 1233666678899999999999988766332 3333322222
Q ss_pred -HhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 351 -CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 351 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+...|+.++|..+|++.++..|.++..+..++..+.+.|+.++|..+|++....+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 3368999999999999999999899999999999999999999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-15 Score=125.34 Aligned_cols=224 Identities=12% Similarity=-0.059 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCC--C
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ--S 101 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~--~ 101 (415)
....|..+...+...|++++|+..|+++. ... . +...+..+...+...|++++|.+.++.+.+.... +
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~-~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAW---ELH-K------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHS-C------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH---Hhh-c------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence 35678889999999999999999999999 554 5 7789999999999999999999999998775311 1
Q ss_pred c----hhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 039757 102 H----VYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175 (415)
Q Consensus 102 ~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 175 (415)
+ ..++..+...+...|++++|...|+...+ |+ ...+.+.|++++|...++++...+
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~----------- 135 (258)
T 3uq3_A 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN----------- 135 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-----------
Confidence 1 57888899999999999999999998875 44 245667788999999999876433
Q ss_pred HhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 176 TRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
+.+...+..+...+...|++++|...++...+. .|.+..++..+..+|...|++++|...|+++...
T Consensus 136 -----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 136 -----------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 224456777888889999999999999999987 4668999999999999999999999999999887
Q ss_pred CC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 256 RK-NLVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 256 ~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
.| +...|..+..++...|++++|...|++..+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55 5778999999999999999999999998774
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-15 Score=125.57 Aligned_cols=225 Identities=10% Similarity=-0.027 Sum_probs=186.5
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHH
Q 039757 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIH 213 (415)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 213 (415)
...|..+...+...|++++|...|++..+. . .+...+..+..++...|++++|...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----------------------~-~~~~~~~~~~~~~~~~~~~~~A~~~~ 61 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL----------------------H-KDITYLNNRAAAEYEKGEYETAISTL 61 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------S-CCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------------h-ccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 356788888999999999999999887532 1 34556777788888899999999999
Q ss_pred hhhhhcCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 214 GYGEKRGFNAFD-------IRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 214 ~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
....+.. |.+ ..++..+..+|...|++++|.+.|+++....|+. ..+...|++++|...++++.
T Consensus 62 ~~a~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 62 NDAVEQG--REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp HHHHHHH--HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHH
Confidence 9988752 322 6888999999999999999999999998876663 44666788999999999988
Q ss_pred hcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHH
Q 039757 287 KVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTR 365 (415)
Q Consensus 287 ~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 365 (415)
.. .|+.... +..+...+...|++++|...+++.....| +..++..+...+...|++++|...++
T Consensus 133 ~~--~~~~~~~-------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 133 YV--NPEKAEE-------------ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HC--CHHHHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hc--CcchHHH-------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 74 3443321 33477779999999999999988765534 67789999999999999999999999
Q ss_pred HHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 366 KVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
++.+..|.+...+..++.++...|++++|...+++..+.+
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999988765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-14 Score=121.97 Aligned_cols=202 Identities=8% Similarity=-0.100 Sum_probs=174.7
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+..+...+...|++++|...++.+.+. .|.+..++..+..+|...|++++|.+.|+++....| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 456777888889999999999999999987 466889999999999999999999999999988755 67789999999
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHH
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRIL 347 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 347 (415)
|...|++++|...++++...+..|+.... +..+...|...|++++|.+.+++.....| +...+..+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRV-------------FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM 181 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 99999999999999999884445544332 22366778999999999999988765534 57788999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 348 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
...+...|++++|...++++.+..+.+...+..++..+...|++++|.++++++.+.+.
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999988888999999999999999999999999987654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-14 Score=120.54 Aligned_cols=238 Identities=8% Similarity=-0.058 Sum_probs=191.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc--
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-- 102 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-- 102 (415)
+..+-.....+...|++++|+..|+++. ...+. +...+..+...+...|+++.|.+.++.+.+.+..|+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l---~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLE---AKKYN------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHH---HTTCC------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence 3455667788999999999999999998 55555 677899999999999999999999999988432222
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcc
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 179 (415)
...|..+...+...|++++|+..|+...+ .+..+|..+...|...|++++|.+.|++..+.+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------- 138 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--------------- 138 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---------------
Confidence 22378889999999999999999998874 356789999999999999999999999998643
Q ss_pred CCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhh-
Q 039757 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC---IFSALKLFEDISVE- 255 (415)
Q Consensus 180 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~- 255 (415)
+.+...+..+...+...+++++|...++.+.+. .|.+...+..+..++...|+ +++|...|+++...
T Consensus 139 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 139 -------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp -------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred -------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 223444555552444455999999999999987 57678888889999999998 88899999887765
Q ss_pred --CCCh------hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 256 --RKNL------VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 256 --~~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
.|+. ..|..+...|...|++++|...|++..+. .|+....
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a 257 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKA 257 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHH
Confidence 1432 56888999999999999999999999885 5766553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-14 Score=116.63 Aligned_cols=202 Identities=9% Similarity=-0.077 Sum_probs=173.7
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
+...+..+...+...|++++|...++.+.+. .|.+...+..+..+|...|++++|.+.|+++....| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 4566778888899999999999999999987 466889999999999999999999999999988754 6778999999
Q ss_pred HHHcc-CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHH
Q 039757 268 GFAMH-GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRR 345 (415)
Q Consensus 268 ~~~~~-~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 345 (415)
.+... |++++|...++++.+.+..|+.... +..+...+...|++++|...++++....| +...+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIA-------------NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 99999 9999999999999884334443221 22367779999999999999988765544 577889
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHccc-CCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMER-GNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.+...+...|++++|...++++.+..| .+...+..+...+...|+.++|..+++.+.+..
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999 888888899999999999999999999987654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=132.83 Aligned_cols=349 Identities=10% Similarity=-0.063 Sum_probs=215.4
Q ss_pred CchhhHHHHHHhHhhc----c--CCcc-hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCC-CchhHHHH
Q 039757 3 SSNNVTTRIHSHLLTT----N--SLLH-HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLF-DSFTYSFL 74 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~----~--~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~l 74 (415)
|+.+.|...|..-.+. + ...| ...+|+.+...|...|++++|...+++..++...-.. +..+ ...++..+
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~--~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS--PYRIESPELDCEE 142 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--SSCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc--ccchhhHHHHHHH
Confidence 4556666666544321 1 1123 3568999999999999999999999998765443322 2111 34566666
Q ss_pred HHHHHhc--CCCchHHHHHHHHHHcCCCCchhhHHHHHHH---HHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHh
Q 039757 75 IRTCVTL--SYPNLGTQLHAVISKVGFQSHVYVNTALVNM---YVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVK 146 (415)
Q Consensus 75 ~~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~ 146 (415)
..++... +++++|.+.|++..+.. +-+...+..+..+ +...++.++|++.+++..+ | +..++..+...+..
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 5555554 46889999999998865 2345555555444 4456778888888877653 3 45566666555544
Q ss_pred ----hCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhh--------
Q 039757 147 ----WGELEYARSLFEEMP---CRNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQ-------- 202 (415)
Q Consensus 147 ----~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~-------- 202 (415)
.|++++|.+.+++.. ..+...+..+...|...|++++|. .+-+..++..+...+..
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH
Confidence 467788999988765 345677888889999999988887 33334445554444322
Q ss_pred -----------cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhh----HHHHHH
Q 039757 203 -----------NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS----WTSIIS 267 (415)
Q Consensus 203 -----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~li~ 267 (415)
.+..+.|...++...+. .|.+..++..+...|...|++++|.+.|++.....++... +..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN 379 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 23456778888888776 4667888999999999999999999999998876454322 333332
Q ss_pred -HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHH
Q 039757 268 -GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRR 345 (415)
Q Consensus 268 -~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~ 345 (415)
.+...|+.++|+..|++..+. .|+....... .+.+.++++..... ..+..+|.
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~-----------------------~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM-----------------------KDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH-----------------------HHHHHHHHHHHHHHCC-CTTHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH-----------------------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 345679999999999998874 5665443322 12223333322222 23677999
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHH
Q 039757 346 ILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381 (415)
Q Consensus 346 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 381 (415)
.+...|...|++++|++.|+++++.++.++.+..-+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999988766555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=123.91 Aligned_cols=180 Identities=8% Similarity=-0.036 Sum_probs=114.0
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHc
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM 271 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 271 (415)
+..+...+...|++++|...++...+. .|.+..++..+..+|...|++++|.+.|++.....| +...|..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 444444445555555555555555554 354677788888888888888888888888777644 45566666623334
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCC---HHHHHHHHhcCCCC---CcC-----
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGR---LEQAEKIALGIPSE---ITD----- 340 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~p~----- 340 (415)
.+++++|...|++..+. .|+.... +..+...+...|+ +++|...+++.... .|+
T Consensus 155 ~~~~~~A~~~~~~a~~~--~p~~~~~-------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL--KPNIYIG-------------YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHH-------------HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHh--CccchHH-------------HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 45888888888887774 4543221 1113444555565 66666666554432 233
Q ss_pred -HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 341 -VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 341 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
..+|..+...|...|++++|.+.++++.+..|.++.+...+.......+
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 2577788888999999999999999999999988877777766655443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-15 Score=133.02 Aligned_cols=301 Identities=15% Similarity=0.035 Sum_probs=207.4
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC----chhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD----SFTYSFLIRTCVTLSYPNLGTQLHAVISK 96 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 96 (415)
..+....+......+...|++++|+..|+++. ...+. + ...+..+...+...|+++.|...++.+.+
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al---~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 75 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAV---QVGTE------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH---hcCcc------cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44566677788888999999999999999998 44333 3 35678888889999999999999988754
Q ss_pred c----CCCC-chhhHHHHHHHHHcCCChhHHHHHhcccCC-----Cc----hhhHHHHHHHHHhhCC-------------
Q 039757 97 V----GFQS-HVYVNTALVNMYVSLGFLKDSSKLFDELPE-----RN----LVTWNVMITGLVKWGE------------- 149 (415)
Q Consensus 97 ~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~------------- 149 (415)
. +-.| ...++..+...|...|++++|...+++..+ ++ ..++..+...|...|+
T Consensus 76 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 155 (406)
T 3sf4_A 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEF 155 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCC
T ss_pred HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhh
Confidence 3 2122 245677777888888999998888877654 12 3367777777777777
Q ss_pred -------HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC
Q 039757 150 -------LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 150 -------~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (415)
+++|.+.+++... +.... +..
T Consensus 156 ~~~a~~~~~~A~~~~~~al~-------------------------------------------------~~~~~---~~~ 183 (406)
T 3sf4_A 156 PEEVRDALQAAVDFYEENLS-------------------------------------------------LVTAL---GDR 183 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------------------------------------------------HHHHT---TCH
T ss_pred hhhHHHHHHHHHHHHHHHHH-------------------------------------------------HHHhc---cCc
Confidence 5555555544321 11111 111
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCC-CCCh
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNR 294 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~ 294 (415)
+....++..+...|...|++++|.+.+++.... .++ ..++..+...|...|++++|...+++...... .++.
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 223456777788888888888888888877654 122 23677788888888888888888888764311 1111
Q ss_pred hhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---CcC----HHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 295 VTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---ITD----VVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 295 ~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
..... .+..+...|...|++++|...+++.... .++ ..++..+...|...|++++|.+.+++.
T Consensus 264 ~~~~~----------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 264 AVEAQ----------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHH----------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 1334777788889999998888765433 112 457788888999999999999999998
Q ss_pred HHcccC------CCccHHHHHHHHHhcCchh
Q 039757 368 LEMERG------NGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 368 ~~~~~~------~~~~~~~l~~~~~~~g~~~ 392 (415)
.+.... ...++..+...+...|+..
T Consensus 334 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 334 LEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 876533 3457778888888888763
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=124.90 Aligned_cols=245 Identities=9% Similarity=-0.056 Sum_probs=149.7
Q ss_pred CchhhHHHHHHhHhhccCCcc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh
Q 039757 3 SSNNVTTRIHSHLLTTNSLLH--HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT 80 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 80 (415)
++.+.|...+..+++.....| +..+|..+...+...|++++|...|+++. ...+. +..+|..+...+..
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~------~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL---AIRPD------MPEVFNYLGIYLTQ 89 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCC------CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH---HcCCC------cHHHHHHHHHHHHH
Confidence 455667777777766543222 45667777777777777777777777777 44444 66777777777777
Q ss_pred cCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHHh
Q 039757 81 LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFE 158 (415)
Q Consensus 81 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (415)
.|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|+.+.+ |+.......+..+...|++++|...++
T Consensus 90 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777777777777777654 33566677777777777777777777777653 444444444445566677777777776
Q ss_pred hCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC--CCCHHHHHHHHHHH
Q 039757 159 EMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN--AFDIRVSNCLIDTY 236 (415)
Q Consensus 159 ~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~ 236 (415)
+....+ +++...+ .+...+...++.++|...+......... |.+..++..+..+|
T Consensus 169 ~~~~~~----------------------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 169 QHFEKS----------------------DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp HHHHHS----------------------CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcC----------------------CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 554211 1111122 2444455556666677766666554210 01246667777777
Q ss_pred HhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHH
Q 039757 237 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
...|++++|...|+++....|+. +.....++...|++++|++.+
T Consensus 226 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77777777777777777654422 223344556666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=119.06 Aligned_cols=196 Identities=15% Similarity=0.054 Sum_probs=124.4
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHH
Q 039757 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212 (415)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 212 (415)
+...+..+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~~a~~~lg~~~~~~g~~~~A~~~ 61 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN----------------------PQDPEALYWLARTQLKLGLVNPALEN 61 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----------------------SSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455666666666666666666666654332 22344555555566666666666666
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHH
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKC-----------GCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVE 280 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~ 280 (415)
++...+. .|.+...+..+..++... |++++|...|++.....| +...+..+..++...|++++|+.
T Consensus 62 ~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 62 GKTLVAR--TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 6666665 465777777788888887 888888888888877655 46677788888888888888888
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHH
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEM 359 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 359 (415)
.|++..+.. .+...+.. +...|...|++++|...|++.....| +...+..+...+...|++++
T Consensus 140 ~~~~al~~~--~~~~~~~~--------------la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 140 SLKQALALE--DTPEIRSA--------------LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHHC--CCHHHHHH--------------HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHhcc--cchHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 888887765 44444333 56667888888888888877665534 55677778888888888888
Q ss_pred HHHHHHHHH
Q 039757 360 GERVTRKVL 368 (415)
Q Consensus 360 a~~~~~~~~ 368 (415)
|.+.+++..
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 888877654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-13 Score=115.82 Aligned_cols=207 Identities=12% Similarity=-0.054 Sum_probs=176.7
Q ss_pred chhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHH
Q 039757 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGL 144 (415)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 144 (415)
...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5677888889999999999999999998875 45678888899999999999999999998764 3677899999999
Q ss_pred HhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC
Q 039757 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (415)
...|++++|.+.|+++.+... .+.+...+..+...+...|++++|...++.+.+. .|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~ 173 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTL--------------------YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRN 173 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTT--------------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC
T ss_pred HHHhHHHHHHHHHHHHHhCcc--------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--Ccc
Confidence 999999999999999876110 1335567778888889999999999999999987 466
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
+...+..+...|...|++++|...|+++....| +...+..+...+...|++++|...++++.+. .|+...+..
T Consensus 174 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 174 QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 889999999999999999999999999987744 5677888999999999999999999999885 566655443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=114.20 Aligned_cols=211 Identities=10% Similarity=-0.053 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
++.+|..+...+...|++++|...|+++. ...+. +...+..+...+...|+++.|.+.++.+.+.. +.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 76 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDAL---KSDPK------NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSA 76 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhCcc------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCh
Confidence 44556666666777777777777777666 43333 55566666666666666666666666665543 2344
Q ss_pred hhHHHHHHHHHcC-CChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCC
Q 039757 104 YVNTALVNMYVSL-GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182 (415)
Q Consensus 104 ~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 182 (415)
.++..+...+... |++++|...++.+.+ .++
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------------------------------~~~------------------ 108 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALA------------------------------DPT------------------ 108 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHT------------------------------STT------------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHc------------------------------CcC------------------
Confidence 4455555555555 555555555554432 000
Q ss_pred CccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC--Chh
Q 039757 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK--NLV 260 (415)
Q Consensus 183 ~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 260 (415)
.+.+...+..+...+...|++++|...++.+.+. .|.+...+..+..++...|++++|.+.++++....| +..
T Consensus 109 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 109 ---YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp ---CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred ---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 0112233334444444444445555444444443 344677888888888888999999999888877644 566
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHH
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
.+..+...+...|+.++|..+++.+.+. .|+...+..
T Consensus 184 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 184 DLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 6777777888888888888888888764 466655544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=121.29 Aligned_cols=203 Identities=11% Similarity=-0.017 Sum_probs=154.5
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
......+..+...+...|+++.|...++.+.+. .|.+...+..+..+|...|++++|.+.|+++....| +...+..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 344556777778888899999999999999886 566889999999999999999999999999888754 67788999
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHH
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVR 344 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 344 (415)
...+...|++++|...++++.+.. |+.... +..+...+...|++++|...++++....| +...+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~-------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 162 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG--MENGDL-------------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEAR 162 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT--CCSHHH-------------HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCCHHH-------------HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHH
Confidence 999999999999999999998753 433221 22366678999999999999988765533 67788
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
..+...+...|++++|...++++.+..+.+..++..++.+|...|++++|...++++.+...
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 88999999999999999999999999988888999999999999999999999999887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-13 Score=115.73 Aligned_cols=225 Identities=12% Similarity=-0.045 Sum_probs=155.3
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhh----cCChhH
Q 039757 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ----NGAVRN 208 (415)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~----~~~~~~ 208 (415)
+..++..+...+...|++++|++.|++..+++ +...+..+...+.. .+++++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------------------------~~~a~~~lg~~~~~g~~~~~~~~~ 60 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------------------------ENSGCFNLGVLYYQGQGVEKNLKK 60 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------------------------CHHHHHHHHHHHHcCCCcCCCHHH
Confidence 34456666666666777777777776665433 12334444455555 667777
Q ss_pred HHHHHhhhhhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc----cCchHHHHH
Q 039757 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAM----HGMGKAAVE 280 (415)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~ 280 (415)
|...|++..+.+ ++..+..+...|.. .+++++|.+.|++..+. .+...+..+...|.. .+++++|..
T Consensus 61 A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~ 135 (273)
T 1ouv_A 61 AASFYAKACDLN----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVE 135 (273)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHH
Confidence 777777776654 66777777778877 88888888888877764 366677777777777 788888888
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh----cCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh---
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR----AGRLEQAEKIALGIPSEITDVVVRRILLGACSF--- 353 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~--- 353 (415)
.|++..+.+ +...+.. +...|.. .+++++|...|++..+. .+...+..+...|..
T Consensus 136 ~~~~a~~~~---~~~a~~~--------------lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 136 YFTKACDLN---DGDGCTI--------------LGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HHHHHHHTT---CHHHHHH--------------HHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhcC---cHHHHHH--------------HHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCC
Confidence 888877754 2222222 4444555 77888888888766554 355667777777777
Q ss_pred -cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh----cCchhhHHHHHHHHhhhcc
Q 039757 354 -HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG----VGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 354 -~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 406 (415)
.+++++|...+++..+.++ ...+..+..+|.. .|++++|.+.+++..+.|.
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7888888888888877654 5677778888887 8888888888888777653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-14 Score=125.24 Aligned_cols=238 Identities=9% Similarity=-0.004 Sum_probs=194.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC-CchHHHHHHHHHHcCCCCch
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY-PNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~ 103 (415)
..+|+.+...+.+.|++++|+..|++++ ...+. +..+|+.+...+...|+ +++|+..|+++++.. +-+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al---~l~P~------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~ 166 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAI---ELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNY 166 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHH---HhCcc------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCH
Confidence 4578889999999999999999999999 66666 88899999999999996 999999999999876 4477
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 180 (415)
..|..+..++...|++++|+..|+++.+ .+...|..+..++.+.|++++|+..|+++.+.+
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---------------- 230 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---------------- 230 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----------------
Confidence 8899999999999999999999999875 467789999999999999999999999987533
Q ss_pred CCCccCCCchHHHHhHHHHHhh-cCChhHH-----HHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHh
Q 039757 181 SNGASTEPSEITILAVLPAIWQ-NGAVRNC-----QLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG--CIFSALKLFEDI 252 (415)
Q Consensus 181 ~~~a~~~~~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~ 252 (415)
+-+...|+.+..++.. .|..++| ...++..++. .|.+...|+.+..++...| ++++|.+.+.++
T Consensus 231 ------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 231 ------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 2234445555555555 3443555 5778888876 6778999999999999988 689999999998
Q ss_pred hhhC-CChhhHHHHHHHHHccC---------chHHHHHHHHHH-HhcCCCCChhhHHH
Q 039757 253 SVER-KNLVSWTSIISGFAMHG---------MGKAAVENFERM-QKVGLKPNRVTFLS 299 (415)
Q Consensus 253 ~~~~-~~~~~~~~li~~~~~~~---------~~~~A~~~~~~m-~~~g~~p~~~~~~~ 299 (415)
+.. .+...+..+..+|.+.| ..++|..+|+++ .+ +.|....|..
T Consensus 303 -~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~ 357 (382)
T 2h6f_A 303 -QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWR 357 (382)
T ss_dssp -TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHH
T ss_pred -ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHH
Confidence 443 45678889999998874 358999999998 55 4676665543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-14 Score=126.02 Aligned_cols=246 Identities=11% Similarity=-0.017 Sum_probs=190.4
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCC-HHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGE-LEYARSLFEEMPCRNVVSWTGILDGYTRM 178 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 178 (415)
...|..+...+...|++++|+..|+...+ | +...|+.+..++.+.|+ +++|+..|++..+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 45566677778888888888888887764 3 46678888888888886 888888888876432
Q ss_pred cCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-
Q 039757 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK- 257 (415)
Q Consensus 179 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 257 (415)
+-+...|..+..++...|++++|...|+++++. .|.+...|..+..++...|++++|+..|+++....|
T Consensus 163 --------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 163 --------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp --------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred --------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 224456666667777778888888888888887 677999999999999999999999999999998865
Q ss_pred ChhhHHHHHHHHHc-cCchHHH-----HHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcC--CHHHHHH
Q 039757 258 NLVSWTSIISGFAM-HGMGKAA-----VENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG--RLEQAEK 329 (415)
Q Consensus 258 ~~~~~~~li~~~~~-~~~~~~A-----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g--~~~~A~~ 329 (415)
+...|+.+..++.. .|..++| +..|++.... .|+.... |..+...+...| ++++|.+
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a-------------~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESA-------------WNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHH-------------HHHHHHHHTTTCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHH-------------HHHHHHHHHccCccchHHHHH
Confidence 67889999999999 6665777 5888888774 5665442 223455566777 6899999
Q ss_pred HHhcCCCCCc-CHHHHHHHHHHHhhcC--------C-hHHHHHHHHHH-HHcccCCCccHHHHHHHHHhc
Q 039757 330 IALGIPSEIT-DVVVRRILLGACSFHG--------N-VEMGERVTRKV-LEMERGNGGDYVLMYNILAGV 388 (415)
Q Consensus 330 ~~~~~~~~~p-~~~~~~~l~~~~~~~~--------~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 388 (415)
.++++ +..| +...+..+...|.+.| + .++|+++++++ .+.+|.....|..+...+...
T Consensus 298 ~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 298 QLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 98887 3334 5668888998888864 3 58999999999 888888888888888777543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=130.65 Aligned_cols=272 Identities=11% Similarity=0.031 Sum_probs=174.0
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch----hhHHHHHHHHHcCCChhHHHHHhcccCC---------Cchhh
Q 039757 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV----YVNTALVNMYVSLGFLKDSSKLFDELPE---------RNLVT 136 (415)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~ 136 (415)
.+..+...+...|+++.|...|+.+.+.+. .+. ..+..+...|...|++++|...|++..+ ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344455566677777777777777766532 122 3455666666667777777766665532 12334
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhh
Q 039757 137 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216 (415)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 216 (415)
+..+...|...|++++|...|++..+..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------------------------------------- 156 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA---------------------------------------------------- 156 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 5556666666666666666665543100
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHhhhh----C---CChhhHHHHHHHHHcc
Q 039757 217 EKRGFNAFDIRVSNCLIDTYAKCGC-----------------IFSALKLFEDISVE----R---KNLVSWTSIISGFAMH 272 (415)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~~----~---~~~~~~~~li~~~~~~ 272 (415)
.+.+..+....++..+...|...|+ +++|.+.+++.... + ....++..+...|...
T Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 236 (411)
T 4a1s_A 157 RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 0001012244566667777777777 77777777765443 1 1234677777888888
Q ss_pred CchHHHHHHHHHHHhcCCC-CChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-------CHHHH
Q 039757 273 GMGKAAVENFERMQKVGLK-PNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-------DVVVR 344 (415)
Q Consensus 273 ~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~ 344 (415)
|++++|...+++..+.... ++.... .. .+..+...|...|++++|...+++.....| ...++
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~---~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 306 (411)
T 4a1s_A 237 GDFQAAIEHHQERLRIAREFGDRAAE---RR-------ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 306 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHH---HH-------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCcHHH---HH-------HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888877653110 111111 11 133477778888888888888876554311 24577
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcccC------CCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 345 RILLGACSFHGNVEMGERVTRKVLEMERG------NGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|.+.+++..+.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88888999999999999999999876544 2347888999999999999999999887653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=120.45 Aligned_cols=198 Identities=14% Similarity=0.086 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
.+..+|..+...+...|++++|...|+++. ...+. +...+..+...+...|++++|...++.+.+.. +.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l---~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~ 90 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAI---EENKE------DAIPYINFANLLSSVNELERALAFYDKALELD-SSA 90 (243)
T ss_dssp ---------------------CCTTHHHHH---TTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHH---HhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Ccc
Confidence 334455555556666666666666666665 33333 45555555666666666666666666655543 234
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcc
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 179 (415)
...+..+...+...|++++|.+.|+++.+ .+...+..+...+.+.|++++|.+.++++
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------------- 151 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA------------------- 151 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH-------------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH-------------------
Confidence 44555555555555555555555555432 23444555555555555555555555544
Q ss_pred CCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-C
Q 039757 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-N 258 (415)
Q Consensus 180 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~ 258 (415)
.+. .|.+...+..+..++...|++++|.+.|+++....| +
T Consensus 152 -------------------------------------~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 152 -------------------------------------VEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp -------------------------------------HHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred -------------------------------------HHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 433 233555556666666666666666666666555433 3
Q ss_pred hhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 259 LVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 259 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
..++..+..+|...|++++|...++++.+.
T Consensus 193 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 193 ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 455666666666666666666666666553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.9e-14 Score=123.54 Aligned_cols=274 Identities=13% Similarity=0.016 Sum_probs=180.8
Q ss_pred hhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc----hhhHHHHHHHHHcCCChhHHHHHhcccCC---------Cchh
Q 039757 69 FTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH----VYVNTALVNMYVSLGFLKDSSKLFDELPE---------RNLV 135 (415)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~ 135 (415)
..+......+...|+++.|...++.+.+... .+ ...+..+...+...|++++|...+++..+ ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455566677888888888888888877642 22 35666777778888888888888776542 1234
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhh
Q 039757 136 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGY 215 (415)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 215 (415)
++..+...+...|++++|...+++..+...
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------------------------- 114 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISR-------------------------------------------------- 114 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------------------------------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 566777777777777777777776532000
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHhhhh----C---CChhhHHHHHHH
Q 039757 216 GEKRGFNAFDIRVSNCLIDTYAKCGC--------------------IFSALKLFEDISVE----R---KNLVSWTSIISG 268 (415)
Q Consensus 216 ~~~~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~~----~---~~~~~~~~li~~ 268 (415)
+.+..+....++..+...|...|+ +++|.+.+++.... + ....++..+...
T Consensus 115 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 192 (338)
T 3ro2_A 115 --ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT 192 (338)
T ss_dssp --HTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 000000013345555556666666 66666666665432 1 123457777778
Q ss_pred HHccCchHHHHHHHHHHHhcCC-CCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---Cc----C
Q 039757 269 FAMHGMGKAAVENFERMQKVGL-KPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---IT----D 340 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p----~ 340 (415)
+...|++++|...+++..+... .++...... .+..+...|...|++++|...+++.... .+ .
T Consensus 193 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 193 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR----------AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH----------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 8888888888888877764310 111111111 1334677788888888888888765433 11 1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC------CccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGN------GGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
..++..+...+...|++++|...++++.+..+.. ..++..++..|.+.|++++|...+++..+..
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4577888889999999999999999998876442 3478889999999999999999999887643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.8e-13 Score=112.95 Aligned_cols=223 Identities=10% Similarity=-0.094 Sum_probs=189.1
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh----cCCCchHHHHHHHHHHcCC
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT----LSYPNLGTQLHAVISKVGF 99 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~ 99 (415)
++.++..+...|...|++++|+..|++.. . .. +..++..+...+.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~---~--~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC---D--LK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH---H--TT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH---H--CC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 46678888899999999999999999998 4 23 66788889999999 999999999999998876
Q ss_pred CCchhhHHHHHHHHHc----CCChhHHHHHhcccCC-CchhhHHHHHHHHHh----hCCHHHHHHHHhhCCCCChhHHHH
Q 039757 100 QSHVYVNTALVNMYVS----LGFLKDSSKLFDELPE-RNLVTWNVMITGLVK----WGELEYARSLFEEMPCRNVVSWTG 170 (415)
Q Consensus 100 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~ 170 (415)
+...+..+...|.. .+++++|+..|+...+ .+...+..+...|.. .+++++|++.|++..+.+
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------ 144 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN------ 144 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC------
Confidence 56778888899999 9999999999998765 467789999999999 999999999999876432
Q ss_pred HHHHHHhccCCCCccCCCchHHHHhHHHHHhh----cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh----cCCH
Q 039757 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQ----NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK----CGCI 242 (415)
Q Consensus 171 li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 242 (415)
+...+..+...+.. .+++++|...++...+.+ +...+..+..+|.. .+++
T Consensus 145 ------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 145 ------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp ------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCH
T ss_pred ------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccH
Confidence 23344555555665 889999999999998874 67788889999999 9999
Q ss_pred HHHHHHHHHhhhhCCChhhHHHHHHHHHc----cCchHHHHHHHHHHHhcC
Q 039757 243 FSALKLFEDISVERKNLVSWTSIISGFAM----HGMGKAAVENFERMQKVG 289 (415)
Q Consensus 243 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g 289 (415)
++|.+.|++..+.++ ...+..+...|.. .+++++|...|++..+.|
T Consensus 203 ~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999888644 6778888899998 999999999999988864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-13 Score=122.85 Aligned_cols=335 Identities=10% Similarity=-0.013 Sum_probs=229.2
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCC---chHHHHHHHHHHcCCCCchhhHH
Q 039757 31 LLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP---NLGTQLHAVISKVGFQSHVYVNT 107 (415)
Q Consensus 31 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~ 107 (415)
+...+.+.|++++|+++|++.. ..| +...+..|...+...|++ ++|...|+...+. +...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa---~~g--------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~ 73 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLA---ELG--------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHT--------CCTGGGTCC--------------------------------CHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHH---HCC--------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHH
Confidence 5667788999999999999998 444 334555566666777877 8999999988754 445556
Q ss_pred HHHHHHHcCC-----ChhHHHHHhcccCCC-chhhHHHHHHHHHhhCCHHHH---HHHHhhCC-CCChhHHHHHHHHHHh
Q 039757 108 ALVNMYVSLG-----FLKDSSKLFDELPER-NLVTWNVMITGLVKWGELEYA---RSLFEEMP-CRNVVSWTGILDGYTR 177 (415)
Q Consensus 108 ~li~~~~~~g-----~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a---~~~~~~m~-~~~~~~~~~li~~~~~ 177 (415)
.|...+...+ ++++|+..|+...++ +...+..|...|...+..+++ .+.+.... ..+...+..+...|..
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRT 153 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 5666555555 778999999887653 455788888888776654443 33333332 2356677777778877
Q ss_pred ccCCCCcc----------CCCchHHHHhHHHHHhhcC---ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc----C
Q 039757 178 MNRSNGAS----------TEPSEITILAVLPAIWQNG---AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC----G 240 (415)
Q Consensus 178 ~~~~~~a~----------~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 240 (415)
.+.++++. ...+...+..+...+...| +.++|...|+...+.| +.+...+..|..+|... +
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCC
Confidence 77666554 2344457788888888899 9999999999999986 44666667788888665 7
Q ss_pred CHHHHHHHHHHhhhhCCChhhHHHHHHH-H--HccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHH
Q 039757 241 CIFSALKLFEDISVERKNLVSWTSIISG-F--AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDM 317 (415)
Q Consensus 241 ~~~~A~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~ 317 (415)
++++|.+.|++.. +.+...+..|... | ...+++++|...|++..+.| +...+.. |...
T Consensus 232 d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~--------------Lg~~ 292 (452)
T 3e4b_A 232 DEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELL--------------LGKL 292 (452)
T ss_dssp CHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHH--------------HHHH
T ss_pred CHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHH--------------HHHH
Confidence 9999999999988 3567777777777 4 56889999999999998876 3333222 4444
Q ss_pred hHhcC-----CHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh----cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh-
Q 039757 318 LGRAG-----RLEQAEKIALGIPSEITDVVVRRILLGACSF----HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG- 387 (415)
Q Consensus 318 ~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 387 (415)
|. .| +.++|.+.|+... . .+...+..|...|.. ..++++|..+|++..+.+ ++.....|..+|..
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa-~-g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV-G-REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQG 367 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT-T-TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSC
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh-C-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhC
Confidence 54 45 9999999999888 3 577778778777766 449999999999998854 56778888888874
Q ss_pred ---cCchhhHHHHHHHHhhhcc
Q 039757 388 ---VGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 388 ---~g~~~~A~~~~~~m~~~~~ 406 (415)
..+..+|..+++...+.|.
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 4588999999998887764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-14 Score=127.63 Aligned_cols=278 Identities=13% Similarity=0.014 Sum_probs=194.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCc----hhHHHHHHHHHhcCCCchHHHHHHHHHHc--
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDS----FTYSFLIRTCVTLSYPNLGTQLHAVISKV-- 97 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 97 (415)
....+..+...+...|++++|+..|+++. ...+. +. ..+..+...+...|+++.|...++++.+.
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al---~~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAI---QAGTE------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCS------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHH---Hhccc------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34456667788899999999999999999 44433 33 47888999999999999999999988653
Q ss_pred --CC-CCchhhHHHHHHHHHcCCChhHHHHHhcccCC---------CchhhHHHHHHHHHhhCC----------------
Q 039757 98 --GF-QSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---------RNLVTWNVMITGLVKWGE---------------- 149 (415)
Q Consensus 98 --g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~---------------- 149 (415)
+- +.....+..+...|...|++++|...|++..+ ....++..+...|...|+
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 11 23456788888999999999999999988753 123467788888888888
Q ss_pred -HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHH
Q 039757 150 -LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRV 228 (415)
Q Consensus 150 -~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (415)
+++|.+.+++..+ +.... +..+....+
T Consensus 198 ~~~~A~~~~~~al~-------------------------------------------------~~~~~---~~~~~~~~~ 225 (411)
T 4a1s_A 198 ALTRAVEFYQENLK-------------------------------------------------LMRDL---GDRGAQGRA 225 (411)
T ss_dssp HHHHHHHHHHHHHH-------------------------------------------------HHHHH---TCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------------------------------------HHHHc---CCHHHHHHH
Confidence 6666666655421 11111 001224456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC-CChhhHHHH
Q 039757 229 SNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGLK-PNRVTFLSV 300 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l 300 (415)
+..+...|...|++++|.+.|++..... ++ ..++..+...|...|++++|...+++....... .+......
T Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~- 304 (411)
T 4a1s_A 226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ- 304 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH-
Confidence 6777778888888888888888776541 12 236777888888888888888888877653111 11111111
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---Cc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---IT----DVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
.+..+...|...|++++|...+++.... .+ ...++..+...|...|++++|...+++..+...
T Consensus 305 ---------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 305 ---------SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1334677788888888888888766543 11 234777888889999999999999999887653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-13 Score=109.42 Aligned_cols=167 Identities=11% Similarity=0.012 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
+..+|..+...|...|++++|.+.|++..+..| +..++..+..+|...|++++|...+.+.... .|+......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~---- 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYY---- 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHH----
Confidence 678888999999999999999999999888755 5678888999999999999999999888775 344433222
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHH
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 382 (415)
.+...+...++++.|...++......| +...+..+...+...|++++|++.|+++.+..|.++.++..++
T Consensus 78 ---------~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 78 ---------ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp ---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ---------HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 245557888999999988877655434 5668888899999999999999999999999999999999999
Q ss_pred HHHHhcCchhhHHHHHHHHhhhcc
Q 039757 383 NILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+|.+.|++++|.+.+++..+.+.
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCc
Confidence 999999999999999998877553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-14 Score=127.31 Aligned_cols=201 Identities=13% Similarity=-0.002 Sum_probs=142.3
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcC----CCCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRG----FNAFDIRVSNCLIDTYAKCGC--------------------IFSALKLF 249 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~ 249 (415)
..+...+...|++++|...+.+..+.. ..+....++..+...|...|+ +++|.+.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 333444444444444444444443321 011124577888888888998 99999988
Q ss_pred HHhhhh---CC----ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCC-CCChhhHHHHHHHHccCCcchHHHHHHhHhc
Q 039757 250 EDISVE---RK----NLVSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTFLSVLNACSHGGLHYGCLVDMLGRA 321 (415)
Q Consensus 250 ~~~~~~---~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~ 321 (415)
++.... .+ ...++..+...|...|++++|...+++..+... .++...... .+..+...|...
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----------~~~~la~~~~~~ 240 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR----------AYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH----------HHHHHHHHHHHT
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH----------HHHHHHHHHHHc
Confidence 876554 11 234688899999999999999999999875311 122221111 144478889999
Q ss_pred CCHHHHHHHHhcCCCC---CcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC------CccHHHHHHHHHhc
Q 039757 322 GRLEQAEKIALGIPSE---ITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGN------GGDYVLMYNILAGV 388 (415)
Q Consensus 322 g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 388 (415)
|++++|...+++.... .++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999998876543 111 4578888999999999999999999998876442 45788999999999
Q ss_pred CchhhHHHHHHHHhhh
Q 039757 389 GRYVDAERLRRVMDER 404 (415)
Q Consensus 389 g~~~~A~~~~~~m~~~ 404 (415)
|++++|.+.+++..+.
T Consensus 321 g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLEI 336 (406)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.6e-14 Score=129.24 Aligned_cols=198 Identities=10% Similarity=-0.076 Sum_probs=172.3
Q ss_pred CchHHHHhHHHHHhhcCCh-hHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHH
Q 039757 188 PSEITILAVLPAIWQNGAV-RNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 266 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li 266 (415)
.+...+..+...+...|++ ++|...|++..+. .|.+...+..+..+|...|++++|.+.|++.....|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 4566778888888999999 9999999999988 577899999999999999999999999999999888888899999
Q ss_pred HHHHcc---------CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhc--------CCHHHHHH
Q 039757 267 SGFAMH---------GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRA--------GRLEQAEK 329 (415)
Q Consensus 267 ~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~--------g~~~~A~~ 329 (415)
..|... |++++|...|++..+. .|+.... |..+...|... |++++|.+
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-------------~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRS-------------WYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHH-------------HHHHHHHHHHHHHhhccccchHHHHHH
Confidence 999999 9999999999999885 4554332 22355667777 88999999
Q ss_pred HHhcCCCCCc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 330 IALGIPSEIT----DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 330 ~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
.|++.....| +...|..+..+|...|++++|.+.|+++.+..|.+..++..+..++...|++++|.+.+.++.
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9998776545 677999999999999999999999999999999999999999999999999999997665543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-13 Score=119.31 Aligned_cols=277 Identities=16% Similarity=0.048 Sum_probs=192.6
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC----chhHHHHHHHHHhcCCCchHHHHHHHHHHc---
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD----SFTYSFLIRTCVTLSYPNLGTQLHAVISKV--- 97 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 97 (415)
...+......+...|++++|+..|+++. ...+. + ...+..+...+...|+++.|.+.++...+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al---~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAV---QVGTE------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 75 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH---hhCcc------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 3455666778899999999999999998 44333 3 367888999999999999999999987543
Q ss_pred -CCCC-chhhHHHHHHHHHcCCChhHHHHHhcccCC-----Cc----hhhHHHHHHHHHhhCC-----------------
Q 039757 98 -GFQS-HVYVNTALVNMYVSLGFLKDSSKLFDELPE-----RN----LVTWNVMITGLVKWGE----------------- 149 (415)
Q Consensus 98 -g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~----------------- 149 (415)
+-.| ...++..+...+...|++++|...+++..+ ++ ..++..+...+...|+
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 76 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 2222 356778888999999999999999988653 22 3367777777877777
Q ss_pred ---HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH
Q 039757 150 ---LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226 (415)
Q Consensus 150 ---~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 226 (415)
+++|.+.+++... +.... +..+...
T Consensus 156 ~~~~~~A~~~~~~a~~-------------------------------------------------~~~~~---~~~~~~~ 183 (338)
T 3ro2_A 156 RNALQAAVDLYEENLS-------------------------------------------------LVTAL---GDRAAQG 183 (338)
T ss_dssp HHHHHHHHHHHHHHHH-------------------------------------------------HHHHH---TCHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------------------------------------------HHHhc---CCHHHHH
Confidence 5666655554421 11110 1012234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCC-CCChhhHH
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTFL 298 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~ 298 (415)
.++..+...+...|++++|.+.+++..... ++ ..++..+...+...|++++|...+++...... .++.....
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 567777888888888888888888776541 22 23677788888888888888888888764311 11111111
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---Cc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---IT----DVVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
. .+..+...|...|++++|...+++.... .+ ...++..+...+...|++++|...++++.+..
T Consensus 264 ~----------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 264 Q----------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp H----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred H----------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 1334777788889999998888766443 11 24477788889999999999999999998765
Q ss_pred c
Q 039757 372 R 372 (415)
Q Consensus 372 ~ 372 (415)
+
T Consensus 334 ~ 334 (338)
T 3ro2_A 334 R 334 (338)
T ss_dssp -
T ss_pred H
Confidence 4
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-12 Score=111.73 Aligned_cols=236 Identities=8% Similarity=-0.014 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHhhcC----CCh----HHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHH-------hcCCC----
Q 039757 24 HTLLFNTLLHFYSLA----DSP----KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV-------TLSYP---- 84 (415)
Q Consensus 24 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~-------~~~~~---- 84 (415)
+...|...+..-.+. ++. ++|..+|+++. ...+. +...|..++..+. +.|++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al---~~~p~------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~ 77 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL---LVLGH------HPDIWYEAAQYLEQSSKLLAEKGDMNNAK 77 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHH---HHHTT------CHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHH---HHcCC------CHHHHHHHHHHHHHhchhhhhccchhhcc
Confidence 344566666665443 343 78999999998 55555 7788988888776 35887
Q ss_pred ---chHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--Cc-hh-hHHHHHHHHHhhCCHHHHHHHH
Q 039757 85 ---NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--RN-LV-TWNVMITGLVKWGELEYARSLF 157 (415)
Q Consensus 85 ---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~-~~~~li~~~~~~g~~~~a~~~~ 157 (415)
++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|
T Consensus 78 ~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999998731234566899999999999999999999999875 43 44 8999999999999999999999
Q ss_pred hhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHH-hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHH
Q 039757 158 EEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAI-WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTY 236 (415)
Q Consensus 158 ~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 236 (415)
++..+.+. .+...+....... ...|+.+.|..+|+...+. .|.+...+..++..+
T Consensus 158 ~~a~~~~p----------------------~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~ 213 (308)
T 2ond_A 158 KKAREDAR----------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYL 213 (308)
T ss_dssp HHHHTSTT----------------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHHhcCC----------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 99875331 1222333222222 2369999999999999987 577899999999999
Q ss_pred HhcCCHHHHHHHHHHhhhh---CC--ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh
Q 039757 237 AKCGCIFSALKLFEDISVE---RK--NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR 294 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 294 (415)
.+.|++++|..+|++.... +| ....|..++..+...|+.+.|..+++++.+. .|+.
T Consensus 214 ~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~--~p~~ 274 (308)
T 2ond_A 214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA--FREE 274 (308)
T ss_dssp HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--TTTT
T ss_pred HHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccc
Confidence 9999999999999999884 33 3567899999999999999999999999875 4543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-12 Score=115.37 Aligned_cols=308 Identities=10% Similarity=-0.085 Sum_probs=207.3
Q ss_pred hhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH--HHhcCCCchHH-----------HHHHHHHHcCCCC
Q 039757 35 YSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT--CVTLSYPNLGT-----------QLHAVISKVGFQS 101 (415)
Q Consensus 35 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~g~~~ 101 (415)
+.+.+++++|..+++++.+.. ....+.+ +...|-.++.. ..-.++.+.+. +.++.+.....+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~-~~~~~~~---~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~ 97 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQEL-DQMEEDQ---DLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARL 97 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HTSCCCH---HHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHH-Hhhccch---HHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCc
Confidence 456999999999999997532 2222002 33344444332 22223344444 7777775532111
Q ss_pred ch----hhHHHHHHHHHcCCChhHHHHHhcccCC-----C----chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHH
Q 039757 102 HV----YVNTALVNMYVSLGFLKDSSKLFDELPE-----R----NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW 168 (415)
Q Consensus 102 ~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 168 (415)
+. ..+......+...|++++|...|++..+ + ...+|..+...|...|++++|...+++..+-
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~----- 172 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI----- 172 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----
Confidence 11 1122255667889999999999988754 2 2457899999999999999999999887521
Q ss_pred HHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCC----CCCCHHHHHHHHHHHHhcCCHHH
Q 039757 169 TGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGF----NAFDIRVSNCLIDTYAKCGCIFS 244 (415)
Q Consensus 169 ~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~ 244 (415)
+.+.++. ......++..+...+...|++++|...+.+..+... .+....++..+..+|...|++++
T Consensus 173 ------~~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 173 ------YKEHEAY----NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp ------HHTCSTT----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------HHhCccc----hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 0000000 011234677788888999999999999988876421 12123578899999999999999
Q ss_pred HHHHHHHhhhh-----C-C-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC-CChhhHHHHHHHHccCCcchHHHHH
Q 039757 245 ALKLFEDISVE-----R-K-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK-PNRVTFLSVLNACSHGGLHYGCLVD 316 (415)
Q Consensus 245 A~~~~~~~~~~-----~-~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~li~ 316 (415)
|.+.|++.... . | ...++..+...|...|++++|...+++....... .+...... +..+..
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----------~~~l~~ 311 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-----------FEFLKS 311 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHH
Confidence 99999998773 2 3 3456889999999999999999999998753111 12211111 222666
Q ss_pred HhHhcCC---HHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 317 MLGRAGR---LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 317 ~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
.|...|+ +++|+.++++..........+..+...|...|++++|...+++..+...
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6888888 8888888888754422344677788888888999999988888877553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.2e-13 Score=116.70 Aligned_cols=249 Identities=10% Similarity=-0.033 Sum_probs=148.8
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHc-------CCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--------
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKV-------GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-------- 131 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------- 131 (415)
+..++..+...+...|+++.|..+++.+.+. ..+.....+..+...|...|++++|...+++..+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4467788888899999999999999988763 2233456677777888888888888877776542
Q ss_pred ---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhH
Q 039757 132 ---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRN 208 (415)
Q Consensus 132 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~ 208 (415)
....++..+...|...|++++|.+.|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------------------------------------------- 140 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI--------------------------------------------- 140 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH---------------------------------------------
Confidence 11334555566666666666666666554210
Q ss_pred HHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------CC-ChhhHHHHHHHHHccCchHHHH
Q 039757 209 CQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--------RK-NLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~~~~~~~~A~ 279 (415)
...... +..|....++..+...|...|++++|.+.|+++... .| ...++..+...|...|++++|.
T Consensus 141 ----~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 141 ----REKVLG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp ----HHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ----HHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 000000 112335667888889999999999999999988765 22 2346888889999999999999
Q ss_pred HHHHHHHhc-------CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHH
Q 039757 280 ENFERMQKV-------GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGAC 351 (415)
Q Consensus 280 ~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 351 (415)
..++++.+. ...+........... +..+...+...+.+.+|...++......| ...++..+...|
T Consensus 216 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~ 288 (311)
T 3nf1_A 216 TLYKEILTRAHEREFGSVDDENKPIWMHAEE-------REECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALY 288 (311)
T ss_dssp HHHHHHHHHHHHHHHC------CCHHHHHHH-------HHHC-------CCSCCCC---------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-------HHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Confidence 999998763 122333222222222 11133334445555555555555554423 344666677777
Q ss_pred hhcCChHHHHHHHHHHHHccc
Q 039757 352 SFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~ 372 (415)
...|++++|.++++++.+..+
T Consensus 289 ~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 289 RRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHTCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHhh
Confidence 777777777777777666543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-11 Score=110.76 Aligned_cols=321 Identities=9% Similarity=-0.055 Sum_probs=217.1
Q ss_pred CcchHHHHHHHHHHh--hcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHH--HHhcCCCchHH--------
Q 039757 21 LLHHTLLFNTLLHFY--SLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRT--CVTLSYPNLGT-------- 88 (415)
Q Consensus 21 ~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~~~~~~a~-------- 88 (415)
+.|+..+=+.|-..| .+.+++++|..+++++.+. ......-+ +...|-.++.. ..-.+..+.+.
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~-~~~~~~~~---~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~ 81 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQD-IQQMEEDQ---DLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTV 81 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-GGGBCCCH---HHHHHHHHHHHHHHHHHHTCCC--------CH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHhcccH---HHHHHHHHHHHHHHHHHhhcCcccccccccch
Confidence 567888888888888 8899999999999998742 12222002 33344444432 22223444444
Q ss_pred -HHHHHHHHcCCCCch----hhHHHHHHHHHcCCChhHHHHHhcccCC-----Cc----hhhHHHHHHHHHhhCCHHHHH
Q 039757 89 -QLHAVISKVGFQSHV----YVNTALVNMYVSLGFLKDSSKLFDELPE-----RN----LVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 89 -~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~ 154 (415)
+.++.+.....+.+. ..+......+...|++++|+..|++..+ ++ ..++..+...|...|++++|.
T Consensus 82 ~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 82 TELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 777776543211111 1222344556789999999999988753 22 457888999999999999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhc----CCCCCCHHHHH
Q 039757 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR----GFNAFDIRVSN 230 (415)
Q Consensus 155 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 230 (415)
..+++..+-. .+.+.. ......++..+...+...|++++|...+.+..+. +..+....++.
T Consensus 162 ~~~~~al~~~-----------~~~~~~----~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 226 (378)
T 3q15_A 162 YHILQALDIY-----------QNHPLY----SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226 (378)
T ss_dssp HHHHHHHHHH-----------HTSTTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HhCCCc----hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9998875210 000000 0012346677888889999999999999888763 11122346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-----hCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 231 CLIDTYAKCGCIFSALKLFEDISV-----ERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~~-----~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
.+..+|...|++++|.+.|++... ..| ...++..+...|.+.|++++|...+++..+..-..+...+...+
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--- 303 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF--- 303 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 899999999999999999999877 333 35678889999999999999999999988753332222332222
Q ss_pred ccCCcchHHHHHHhHhcCC---HHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 039757 305 SHGGLHYGCLVDMLGRAGR---LEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM 370 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 370 (415)
..+...|...++ +++|+..++...........+..+...|...|++++|...++++.+.
T Consensus 304 -------~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 304 -------LFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp -------HHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 225556777788 88888888875443122346667888888889999998888887664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-14 Score=122.97 Aligned_cols=249 Identities=12% Similarity=0.011 Sum_probs=170.3
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHH
Q 039757 133 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212 (415)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 212 (415)
+..++..+...+...|++++|..+|+++.+.- .+.+.. ........+..+...+...|++++|...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~ 91 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDL-----------EKTSGH---DHPDVATMLNILALVYRDQNKYKDAANL 91 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------HHHHCS---SSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------HHHcCC---CCHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34578888889999999999999998875310 000000 0122345677788888899999999999
Q ss_pred Hhhhhhc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--------C-ChhhHHHHHHHHHccCchHH
Q 039757 213 HGYGEKR------GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER--------K-NLVSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 213 ~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~-~~~~~~~li~~~~~~~~~~~ 277 (415)
++...+. +..+....++..+...|...|++++|.+.|+++.... | ....+..+...+...|++++
T Consensus 92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 9988875 3335467888999999999999999999999987651 2 34568889999999999999
Q ss_pred HHHHHHHHHhc---CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---------Cc------
Q 039757 278 AVENFERMQKV---GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---------IT------ 339 (415)
Q Consensus 278 A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~p------ 339 (415)
|...++++... ...++...... .+..+...|...|++++|.+.++++... .+
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAK----------TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHH----------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 99999998764 11111111111 1344778899999999999999876542 01
Q ss_pred -CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 340 -DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 340 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
....+..+...+...+.+.++...++......+....++..++.+|.+.|++++|.+++++..+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 112233333445556677778888888887777778899999999999999999999999887643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-13 Score=120.26 Aligned_cols=294 Identities=9% Similarity=-0.041 Sum_probs=203.8
Q ss_pred HHhcCCCchHHHHHHHHHHc--CC--CCchhhHHHHHHH--HHcCCChhHHH-----------HHhcccCC-C-chh---
Q 039757 78 CVTLSYPNLGTQLHAVISKV--GF--QSHVYVNTALVNM--YVSLGFLKDSS-----------KLFDELPE-R-NLV--- 135 (415)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~--~~~~g~~~~a~-----------~~~~~~~~-~-~~~--- 135 (415)
+.+.++++.|..+++.+.+. .+ .++...|-.++.. ..-.++++.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 56789999999999998653 22 2333333444332 11223344444 55555432 1 111
Q ss_pred ---hHHHHHHHHHhhCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChh
Q 039757 136 ---TWNVMITGLVKWGELEYARSLFEEMPC-----RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207 (415)
Q Consensus 136 ---~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~ 207 (415)
.+......+...|++++|...|++..+ ++. .....++..+...+...|+++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------~~~a~~~~~lg~~~~~~~~~~ 160 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDR---------------------IEKAEFFFKMSESYYYMKQTY 160 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH---------------------HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCH---------------------HHHHHHHHHHHHHHHHcCCHH
Confidence 222356667889999999999998754 120 113356777888888999999
Q ss_pred HHHHHHhhhhhcCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHHHHHHHccCch
Q 039757 208 NCQLIHGYGEKRGF-----NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSIISGFAMHGMG 275 (415)
Q Consensus 208 ~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~~~~ 275 (415)
.|...+.+..+... .+....+++.+..+|...|++++|.+.|++..... ++ ..++..+..+|...|++
T Consensus 161 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 161 FSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 99998888876421 12235678899999999999999999999987651 22 24688899999999999
Q ss_pred HHHHHHHHHHHhc----CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----CcC-HHHHH
Q 039757 276 KAAVENFERMQKV----GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-----ITD-VVVRR 345 (415)
Q Consensus 276 ~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p~-~~~~~ 345 (415)
++|...+++..+. +..|+... .+..+...|.+.|++++|...+++.... .|. ...+.
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 307 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQ-------------AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFE 307 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHH-------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998763 22133211 1344788899999999999999876543 122 22356
Q ss_pred HHHHHHhhcCC---hHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 346 ILLGACSFHGN---VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 346 ~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+...+...|+ .++|+.++++. ...+.....+..++..|...|++++|...+++..+..-
T Consensus 308 ~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 308 FLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 67778888888 77777777766 22222456788999999999999999999999876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-11 Score=106.31 Aligned_cols=171 Identities=15% Similarity=-0.002 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC------ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh-hhH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK------NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR-VTF 297 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~ 297 (415)
....+..+...+...|++++|...+++.....+ ...++..+...+...|++++|...+++.....-.++. ..+
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence 345667788888999999999999998766522 1245778888899999999999999998764222222 111
Q ss_pred HHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-----HHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-----VVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
..... ...+..+...|++++|...+++.....|. ...+..+...+...|++++|...++++.....
T Consensus 214 ~~~~~---------~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 214 ISNAN---------KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp HHHHH---------HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH---------HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11100 01344577899999999999887765221 22566778889999999999999999877653
Q ss_pred CC------CccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 373 GN------GGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 373 ~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.. ...+..+..++...|++++|...+++....
T Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 31 236677888999999999999999887654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.6e-12 Score=114.72 Aligned_cols=358 Identities=10% Similarity=-0.019 Sum_probs=216.4
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCCh---HHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHH
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSP---KKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCV 79 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 79 (415)
++...|.++|....+.| ++.++..+...|...|+. ++|+..|++.. .. ++..+..|...+.
T Consensus 17 g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~---~~---------~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAA---DT---------SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------------------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH---hC---------CHHHHHHHHHHHH
Confidence 45677778888777665 234445555666666776 77888887776 22 2234455555444
Q ss_pred hcC-----CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHH---HHHhcccCC-CchhhHHHHHHHHHhhC--
Q 039757 80 TLS-----YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDS---SKLFDELPE-RNLVTWNVMITGLVKWG-- 148 (415)
Q Consensus 80 ~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~~~~-~~~~~~~~li~~~~~~g-- 148 (415)
..+ ++++|...|+...+.|. ++ .+..|...|...+..+++ .+.+....+ .+...+..+...|...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 444 55678888887777653 22 455566666655543333 333332222 34556666666666666
Q ss_pred --CHHHHHHHHhhCCCCChhHHHHHHHHHHhcc---CCCCcc---------CCCchHHHHhHHHHHhhc----CChhHHH
Q 039757 149 --ELEYARSLFEEMPCRNVVSWTGILDGYTRMN---RSNGAS---------TEPSEITILAVLPAIWQN----GAVRNCQ 210 (415)
Q Consensus 149 --~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~---~~~~a~---------~~~~~~~~~~ll~~~~~~----~~~~~a~ 210 (415)
+.+++..+++.....++..+..|...|.+.| +.++|. ..++...+..+...|... +++++|.
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 3444555555555555566777777777666 555554 334444445566666544 7999999
Q ss_pred HHHhhhhhcCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccC-----chHHHHHHH
Q 039757 211 LIHGYGEKRGFNAFDIRVSNCLIDT-Y--AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG-----MGKAAVENF 282 (415)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~A~~~~ 282 (415)
..|+... . .++..+..|... | ...+++++|.+.|++..+. .+...+..|...|. .| ++++|...|
T Consensus 238 ~~~~~aa-~----g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 238 ALLEKIA-P----GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-DQPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHG-G----GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHc-C----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 9999988 3 377788888887 4 5688999999999998874 36777888888887 55 999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh----cCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh----c
Q 039757 283 ERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR----AGRLEQAEKIALGIPSEITDVVVRRILLGACSF----H 354 (415)
Q Consensus 283 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 354 (415)
++.. .| +...... |...|.. ..+.++|...|+...+. .+......|...|.. .
T Consensus 311 ~~Aa-~g---~~~A~~~--------------Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 311 EKAV-GR---EVAADYY--------------LGQIYRRGYLGKVYPQKALDHLLTAARN-GQNSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp HTTT-TT---CHHHHHH--------------HHHHHHTTTTSSCCHHHHHHHHHHHHTT-TCTTHHHHHHHHHHSCTTBC
T ss_pred HHHh-CC---CHHHHHH--------------HHHHHHCCCCCCcCHHHHHHHHHHHHhh-ChHHHHHHHHHHHHhCCCCC
Confidence 9877 32 2222222 4444544 45999999999887665 345566666666653 5
Q ss_pred CChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 355 GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
++.++|..+++...+.+.+........+......++..+|..+.++..+..
T Consensus 372 ~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 689999999999999886644433334444445567888888888776643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=126.61 Aligned_cols=168 Identities=13% Similarity=0.077 Sum_probs=141.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
.|.+...++.|..+|.+.|++++|++.|++..+..| +..+|+.+..+|.+.|++++|+..|++..+. .|+...
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~---- 78 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFAD---- 78 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH----
Confidence 566788899999999999999999999999888765 5678889999999999999999999998874 566433
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHH
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYV 379 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 379 (415)
.|..+...|.+.|++++|++.|++..+..| +...|..+..+|...|++++|++.|+++++..|.+...+.
T Consensus 79 ---------a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~ 149 (723)
T 4gyw_A 79 ---------AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149 (723)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHh
Confidence 133477778899999999999987765545 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 380 LMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.++.+|...|++++|.+.+++..+.
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999999999988887653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-11 Score=107.25 Aligned_cols=222 Identities=8% Similarity=-0.052 Sum_probs=167.9
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCCh-------hHHHHHHhhhhhcC
Q 039757 151 EYARSLFEEMPC---RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAV-------RNCQLIHGYGEKRG 220 (415)
Q Consensus 151 ~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~ 220 (415)
++|..+|++... .+...|..++..+...++ .+.+.|++ ++|..+|++.++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~------------------~l~~~g~~~~~~~~~~~A~~~~~rAl~~- 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK------------------LLAEKGDMNNAKLFSDEAANIYERAIST- 93 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHHHTSCCHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch------------------hhhhccchhhcccchHHHHHHHHHHHHH-
Confidence 677788877763 233444444443332211 02245665 8999999999983
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-hh-hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh-hH
Q 039757 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LV-SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV-TF 297 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~ 297 (415)
+.|.+...|..++..+...|++++|.++|+++....|+ .. .|..++..+.+.|++++|..+|++..+.. |+.. .|
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~ 171 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVY 171 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHH
Confidence 14667889999999999999999999999999987664 44 79999999999999999999999998853 4332 22
Q ss_pred HHHHHHHccCCcchHHHHHH-hHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc---c
Q 039757 298 LSVLNACSHGGLHYGCLVDM-LGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEME---R 372 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~ 372 (415)
.. .... +...|+.++|.++|+......| +...|..++..+.+.|++++|..+|+++.+.. |
T Consensus 172 ~~--------------~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 172 VT--------------AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HH--------------HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HH--------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 11 1111 2236999999999988766534 56789999999999999999999999999963 3
Q ss_pred C-CCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 373 G-NGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 373 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
. ....|..++..+.+.|+.++|..+++++.+....
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 2 4568888999999999999999999998876654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=122.06 Aligned_cols=211 Identities=9% Similarity=-0.087 Sum_probs=173.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCC-chHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCCh
Q 039757 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYP-NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 119 (415)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 119 (415)
+++++..++... ..... +...+..+...+...|++ ++|.+.|+++.+.. +.+...|..+..+|...|++
T Consensus 84 ~~~al~~l~~~~---~~~~~------~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 84 MEKTLQQMEEVL---GSAQV------EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHH---TTCCC------CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHh---ccCch------hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH
Confidence 455566666554 43333 778899999999999999 99999999998875 44678899999999999999
Q ss_pred hHHHHHhcccCC--CchhhHHHHHHHHHhh---------CCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC
Q 039757 120 KDSSKLFDELPE--RNLVTWNVMITGLVKW---------GELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188 (415)
Q Consensus 120 ~~a~~~~~~~~~--~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~ 188 (415)
++|...|+...+ |+...+..+...+... |++++|++.|++..+.+ +.
T Consensus 154 ~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------p~ 211 (474)
T 4abn_A 154 TSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD----------------------VL 211 (474)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC----------------------TT
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC----------------------CC
Confidence 999999998865 7778899999999999 99999999999986422 22
Q ss_pred chHHHHhHHHHHhhc--------CChhHHHHHHhhhhhcCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 039757 189 SEITILAVLPAIWQN--------GAVRNCQLIHGYGEKRGFNA---FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 257 (415)
+...+..+..++... |++++|...|+...+. .| .+...+..+..+|...|++++|.+.|++.....|
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555666666666 8899999999999987 46 6899999999999999999999999999988755
Q ss_pred -ChhhHHHHHHHHHccCchHHHHHHHHHH
Q 039757 258 -NLVSWTSIISGFAMHGMGKAAVENFERM 285 (415)
Q Consensus 258 -~~~~~~~li~~~~~~~~~~~A~~~~~~m 285 (415)
+...+..+..++...|++++|...+.++
T Consensus 290 ~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 290 AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5667889999999999999998766554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-11 Score=100.87 Aligned_cols=240 Identities=8% Similarity=-0.086 Sum_probs=167.6
Q ss_pred hCCHHHHHHHHhhCCCCChh-HHHHHHHHHHhccCCCCcc-CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC
Q 039757 147 WGELEYARSLFEEMPCRNVV-SWTGILDGYTRMNRSNGAS-TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~~~-~~~~li~~~~~~~~~~~a~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (415)
.|.+..++.-...+...+.. .--.+.++|.-.|++.... ..|....+..+.. +...+ +...+++....+ ++
T Consensus 26 ~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~--~~ 98 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK--QN 98 (310)
T ss_dssp TTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS--CC
T ss_pred hhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC--CC
Confidence 45555555544444322222 2222345666666655443 2233223333333 33322 677888877764 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC-----Chhh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK---NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP-----NRVT 296 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~~ 296 (415)
+..++..+..++...|++++|++++.+....+| +...+..++..+.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 566667889999999999999999999866543 4566888899999999999999999999885 66 3566
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHc------
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEM------ 370 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 370 (415)
...+..+ .+......++..+|..+|+++....|+..+-..++.++...|++++|.+.++.+.+.
T Consensus 177 l~~Laea----------~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~ 246 (310)
T 3mv2_B 177 ILNLAES----------YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQ 246 (310)
T ss_dssp HHHHHHH----------HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTT
T ss_pred HHHHHHH----------HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 5555555 333344445999999999999888776444445555899999999999999988776
Q ss_pred ----ccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 371 ----ERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 371 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
++.++.++..++......|+ +|.++++++.+....
T Consensus 247 k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 247 KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 36688888788877777887 899999999876643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=9.6e-12 Score=99.82 Aligned_cols=169 Identities=14% Similarity=0.023 Sum_probs=145.6
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
+...|..+...+...|++++|...|++..+. .|.+..++..+..+|.+.|++++|...+.......| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4567888999999999999999999999988 687999999999999999999999999999988755 5677888889
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
.+...++++.|...+.+.... .|+.... +..+...|.+.|++++|++.|++.....| +..+|..
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~-------------~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADA-------------YYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHH-------------HHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 999999999999999998875 4554332 22366779999999999999988766544 6678999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCC
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (415)
+..+|.+.|++++|++.|+++++.+|.+
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 9999999999999999999999987753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-12 Score=101.85 Aligned_cols=167 Identities=15% Similarity=0.031 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
...+..+...+...|++++|.+.|+++....| +...+..+...+...|++++|...++++.+. .|+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~------- 78 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKV------- 78 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHH-------
Confidence 44566667777777778888777777766533 5566777777777778888888877777664 3332211
Q ss_pred ccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCC-cCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 305 SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEI-TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
+..+...+...|++++|.+.++++.... .+...+..+...+...|++++|.+.++++.+..+.+...+..++.
T Consensus 79 ------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 152 (186)
T 3as5_A 79 ------ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152 (186)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 2225556777788888888777655442 355677777888888888888888888888888777788888888
Q ss_pred HHHhcCchhhHHHHHHHHhhhccc
Q 039757 384 ILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
.+...|++++|...+++..+....
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 153 SYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC
Confidence 888888888888888887766543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.7e-10 Score=106.26 Aligned_cols=144 Identities=11% Similarity=0.125 Sum_probs=98.7
Q ss_pred hHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC---
Q 039757 7 VTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY--- 83 (415)
Q Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~--- 83 (415)
...++...+.++. -|..+|..++..+.+.++++.+..+|+++. ..-+. +...|..-+..-.+.++
T Consensus 51 ~i~~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL---~~fP~------~~~lW~~Yi~~E~~~~~~~~ 118 (679)
T 4e6h_A 51 VIGKLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLH---DRFPL------MANIWCMRLSLEFDKMEELD 118 (679)
T ss_dssp HHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHTC--CCC
T ss_pred HHHHHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHH---HHCCC------CHHHHHHHHHHHHhhCCcch
Confidence 3444555555544 588899999999999999999999999998 44333 66778888888888888
Q ss_pred CchHHHHHHHHHHcC-CCCchhhHHHHHHHHHcCCCh--------hHHHHHhcccC------CC-chhhHHHHHHHHH--
Q 039757 84 PNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFL--------KDSSKLFDELP------ER-NLVTWNVMITGLV-- 145 (415)
Q Consensus 84 ~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~li~~~~-- 145 (415)
++.+.++|+..+... .+|++..|...+....+.++. +.+.++|+... ++ +...|...+....
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 889999999987754 137888888887766665543 23346666532 22 3457777776543
Q ss_pred -------hhCCHHHHHHHHhhCCC
Q 039757 146 -------KWGELEYARSLFEEMPC 162 (415)
Q Consensus 146 -------~~g~~~~a~~~~~~m~~ 162 (415)
..++++.+..+|++...
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCcHHHHhHHHHHHHHHHHHHh
Confidence 24456778888887763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.9e-11 Score=97.71 Aligned_cols=199 Identities=11% Similarity=-0.097 Sum_probs=146.1
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
.+...+......+...|++++|...|+...+.. | ++...+..+..++...|++++|.+.|++.....| +...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 355778888888999999999999999999974 3 5788888899999999999999999999988766 45679999
Q ss_pred HHHHHccCchHHHHHHHHHHHhcCCCCChhhHH-HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC---H
Q 039757 266 ISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL-SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD---V 341 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~ 341 (415)
..+|...|++++|...+++..+. .|+...+. .+..+ |..+...+...|++++|++.|++.....|+ .
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 153 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIY-------YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT 153 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH-------HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH
Confidence 99999999999999999999885 56654332 22222 445778889999999999999998877565 4
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..|..+..++...|+. .++++......+...|... .....|.+++|...+++..+.
T Consensus 154 ~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 154 DALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 5777777777665544 3344444333332222222 223345556666666555544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-11 Score=108.31 Aligned_cols=308 Identities=12% Similarity=-0.021 Sum_probs=202.2
Q ss_pred CchhHHHHHHHH--HhcCCCchHHHHHHHHHHc--CC--CCchhhHHHHHHH--HHcCCChhHHH---------HHhccc
Q 039757 67 DSFTYSFLIRTC--VTLSYPNLGTQLHAVISKV--GF--QSHVYVNTALVNM--YVSLGFLKDSS---------KLFDEL 129 (415)
Q Consensus 67 ~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~--~~~~g~~~~a~---------~~~~~~ 129 (415)
+..+-+.|-..+ .+.++++.|.++++.+.+. .+ .++...|-.++.. ..-.+.+..+. ..++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 444445555555 7889999999999988653 22 2334444444432 11112222222 444444
Q ss_pred CC---C-c-hh---hHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHh
Q 039757 130 PE---R-N-LV---TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIW 201 (415)
Q Consensus 130 ~~---~-~-~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~ 201 (415)
.. + + .. .|......+...|++++|+..|++..+.-... ++ ......++..+...+.
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~-----~~~~a~~~~~lg~~y~ 152 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-----------SD-----DIEKAEFHFKVAEAYY 152 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-----------CC-----HHHHHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-----------CC-----hHHHHHHHHHHHHHHH
Confidence 32 2 1 11 23344556678999999999999875311000 00 1112346677888888
Q ss_pred hcCChhHHHHHHhhhhhcCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCC----hhhHHHHHHHH
Q 039757 202 QNGAVRNCQLIHGYGEKRGF-----NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKN----LVSWTSIISGF 269 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~ 269 (415)
..|+++.|...+.+..+... .+....+++.+..+|...|++++|.+.|++.... .++ ..+++.+..+|
T Consensus 153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999998888775321 1123567889999999999999999999988764 122 34688899999
Q ss_pred HccCchHHHHHHHHHHHhcC---CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-----CcC-
Q 039757 270 AMHGMGKAAVENFERMQKVG---LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-----ITD- 340 (415)
Q Consensus 270 ~~~~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p~- 340 (415)
...|++++|...+++..... ..|.. .. .+..+...|.+.|++++|...+++.... .|.
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDLL--PK-----------VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGGH--HH-----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChhH--HH-----------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999987621 12222 11 1334788899999999999998764332 122
Q ss_pred HHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 341 VVVRRILLGACSFHGN---VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
...+..+...+...++ +.+|+.++++.. ..+.....+..++..|...|++++|...+++..+.
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2355666666777788 777777777621 11223457778999999999999999999988653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=8.8e-11 Score=93.86 Aligned_cols=170 Identities=16% Similarity=0.071 Sum_probs=142.6
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+..+...+...|++++|...++.+.+. .|.+..++..+...+...|++++|.+.++++....| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345667777888999999999999999887 566889999999999999999999999999988754 67789999999
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHH
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRIL 347 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 347 (415)
+...|++++|...++++... .|+.... +..+...+...|++++|.+.+++.....| +...+..+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~-------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 150 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNV-------------RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHH-------------HHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99999999999999999875 3433221 22366778999999999999988765533 56789999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcccCCCc
Q 039757 348 LGACSFHGNVEMGERVTRKVLEMERGNGG 376 (415)
Q Consensus 348 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 376 (415)
...+...|++++|...++++.+..|.+..
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999999999998877543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.1e-11 Score=98.30 Aligned_cols=154 Identities=9% Similarity=-0.084 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER--KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
+.++..+......+...|++++|.+.|++..... ++...+..+..++...|++++|...|++..+. .|+....
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~--- 78 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANA--- 78 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHH---
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHH---
Confidence 4477889999999999999999999999998874 57777777999999999999999999999874 5664332
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-H-------HHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-V-------VVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
+..+...|...|++++|.+.+++.....|+ . ..|..+...+...|++++|++.++++++..|
T Consensus 79 ----------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 79 ----------YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS 148 (228)
T ss_dssp ----------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred ----------HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence 333777799999999999999887665443 3 4577888889999999999999999999999
Q ss_pred C--CCccHHHHHHHHHhcCch
Q 039757 373 G--NGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 373 ~--~~~~~~~l~~~~~~~g~~ 391 (415)
. +...+..++.+|...|+.
T Consensus 149 ~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHH
Confidence 8 889999999999888776
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-10 Score=99.57 Aligned_cols=235 Identities=11% Similarity=-0.023 Sum_probs=140.1
Q ss_pred HhcCCCchHHHHHHHHHHc-------CCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----------C-chhhHHHH
Q 039757 79 VTLSYPNLGTQLHAVISKV-------GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----------R-NLVTWNVM 140 (415)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~l 140 (415)
...|+++.|...+++..+. ..+....++..+...|...|++++|+..|++..+ | ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4668888888888887652 1123455677777888888888888877776542 1 23356666
Q ss_pred HHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcC
Q 039757 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220 (415)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 220 (415)
...|...|++++|.+.|++... +++.... .
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~-------------------------------------------------~~~~~~~-~ 121 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALE-------------------------------------------------IREKVLG-K 121 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH-------------------------------------------------HHHHHHC-T
T ss_pred HHHHHHhccHHHHHHHHHHHHH-------------------------------------------------HHHHHcC-C
Confidence 6666666666666666665521 0000000 1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------CC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc---
Q 039757 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--------RK-NLVSWTSIISGFAMHGMGKAAVENFERMQKV--- 288 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--- 288 (415)
..|....++..+..+|...|++++|.+.|+++... .| ...++..+...|...|++++|...+++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12335677888899999999999999999988765 22 2456888889999999999999999988763
Q ss_pred ----CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHH
Q 039757 289 ----GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERV 363 (415)
Q Consensus 289 ----g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 363 (415)
...+....+...+..+.. ....+.....+..+...++......| ...++..+...|...|++++|..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 274 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREE-------SKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHH-------TTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHh-------cCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 223333333322221100 00011122334455555555554423 334677777778888888888888
Q ss_pred HHHHHHc
Q 039757 364 TRKVLEM 370 (415)
Q Consensus 364 ~~~~~~~ 370 (415)
++++.+.
T Consensus 275 ~~~al~~ 281 (283)
T 3edt_B 275 EDCASRN 281 (283)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 8777653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.8e-11 Score=113.95 Aligned_cols=167 Identities=8% Similarity=-0.026 Sum_probs=147.0
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
+...++.+...+.+.|++++|...|++.++. .|.+..++..+..+|.+.|++++|++.|++..+..| +...|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4678899999999999999999999999998 687899999999999999999999999999988866 5788999999
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 346 (415)
+|...|++++|++.|++..+. .|+... .|..+...|.+.|++++|++.|++..+..| +...+..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~-------------a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFAD-------------AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhh
Confidence 999999999999999999885 566543 244478889999999999999998776555 5678999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
+..++...|++++|.+.++++.+..+
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 99999999999999999999887653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=105.56 Aligned_cols=206 Identities=9% Similarity=-0.035 Sum_probs=142.8
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----C-
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKR------GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----R- 256 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~- 256 (415)
...++..+...+...|++++|...++...+. +..|....++..+..+|...|++++|.+.|+++... +
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4556778888889999999999999998865 334556788999999999999999999999998765 1
Q ss_pred --C-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc---CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH
Q 039757 257 --K-NLVSWTSIISGFAMHGMGKAAVENFERMQKV---GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 257 --~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (415)
| ...++..+...|...|++++|...+++..+. ...++...... .+..+...|...|++++|...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------~~~~la~~~~~~g~~~~A~~~ 191 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK----------TKNNLASCYLKQGKYQDAETL 191 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH----------HHHHHHHHHHHHTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH----------HHHHHHHHHHHcCCHHHHHHH
Confidence 2 3456888999999999999999999998764 11122221111 134478889999999999999
Q ss_pred HhcCCCC---------Cc-CHHHHHHHHHHHhhcCCh------HHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhH
Q 039757 331 ALGIPSE---------IT-DVVVRRILLGACSFHGNV------EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA 394 (415)
Q Consensus 331 ~~~~~~~---------~p-~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 394 (415)
+++.... .+ ....|..+...+...+.. ..+...++......+....++..++.+|...|++++|
T Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 271 (283)
T 3edt_B 192 YKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAA 271 (283)
T ss_dssp HHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8766532 12 222344443333333322 2333333222222222456788999999999999999
Q ss_pred HHHHHHHhhh
Q 039757 395 ERLRRVMDER 404 (415)
Q Consensus 395 ~~~~~~m~~~ 404 (415)
..++++..+.
T Consensus 272 ~~~~~~al~~ 281 (283)
T 3edt_B 272 HTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999987653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-10 Score=96.48 Aligned_cols=205 Identities=9% Similarity=-0.071 Sum_probs=151.2
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC----h
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD---IRVSNCLIDTYAKCGCIFSALKLFEDISVERKN----L 259 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~ 259 (415)
+.+...+......+.+.|++++|...|+.+.+. .|.+ ...+..+..+|.+.|++++|...|++.....|+ .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 345567777888889999999999999999987 4545 778889999999999999999999999887542 3
Q ss_pred hhHHHHHHHHHc--------cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH----ccCCcchHHHHHHhHhcCCHHHH
Q 039757 260 VSWTSIISGFAM--------HGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC----SHGGLHYGCLVDMLGRAGRLEQA 327 (415)
Q Consensus 260 ~~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~~li~~~~~~g~~~~A 327 (415)
..+..+..++.. .|++++|...|++..+. .|+........... ......+..+...|.+.|++++|
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 457778888888 99999999999999885 45543322211000 00000112367778999999999
Q ss_pred HHHHhcCCCCCcC----HHHHHHHHHHHhhc----------CChHHHHHHHHHHHHcccCCC---ccHHHHHHHHHhcCc
Q 039757 328 EKIALGIPSEITD----VVVRRILLGACSFH----------GNVEMGERVTRKVLEMERGNG---GDYVLMYNILAGVGR 390 (415)
Q Consensus 328 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~ 390 (415)
+..|+.+....|+ ...+..+..+|... |++++|...++++.+..|.++ .+...+...+.+.|+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999887655443 34677777777765 888999999999999888765 345555666666666
Q ss_pred hhhHH
Q 039757 391 YVDAE 395 (415)
Q Consensus 391 ~~~A~ 395 (415)
++++.
T Consensus 248 ~~~~~ 252 (261)
T 3qky_A 248 LEGDA 252 (261)
T ss_dssp HHTCT
T ss_pred hhhhh
Confidence 65543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-09 Score=96.39 Aligned_cols=274 Identities=12% Similarity=-0.005 Sum_probs=185.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCch----hHHHHHHHHHhcCCCchHHHHHHHHHHcCCC-Cc
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSF----TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ-SH 102 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~ 102 (415)
.......+...|++++|...+++.. ..... . +.. +++.+...+...|+++.|.+.+++..+.... ++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al---~~~~~--~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLAL---EELPP--G---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---HTCCT--T---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH---HcCCC--C---chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 3344556678999999999999988 43322 1 322 5667777888999999999999988653211 11
Q ss_pred ----hhhHHHHHHHHHcCCChhHHHHHhcccCC----------C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhH
Q 039757 103 ----VYVNTALVNMYVSLGFLKDSSKLFDELPE----------R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS 167 (415)
Q Consensus 103 ----~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 167 (415)
..++..+...+...|++++|...+++..+ | ....+..+...+...|++++|...+++.......
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~- 167 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS- 167 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc-
Confidence 23356677888999999999999987653 1 1235677888899999999999999886521100
Q ss_pred HHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHH-----HHHHHHHhcCCH
Q 039757 168 WTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSN-----CLIDTYAKCGCI 242 (415)
Q Consensus 168 ~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~ 242 (415)
.+ .......+..+...+...|++++|...++........+.....+. ..+..+...|++
T Consensus 168 ----------~~------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 168 ----------YQ------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp ----------SC------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------cC------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 00 011234566777788899999999999998876422221211221 234557899999
Q ss_pred HHHHHHHHHhhhhCCC-----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHccCCcchHHHHH
Q 039757 243 FSALKLFEDISVERKN-----LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPN-RVTFLSVLNACSHGGLHYGCLVD 316 (415)
Q Consensus 243 ~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~li~ 316 (415)
++|...+++.....+. ...+..+...+...|++++|...+++.....-... .... ... +..+..
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~---~~~-------~~~la~ 301 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL---NRN-------LLLLNQ 301 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH---HHH-------HHHHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH---HHH-------HHHHHH
Confidence 9999999998764322 12466778889999999999999998865311111 1110 001 122566
Q ss_pred HhHhcCCHHHHHHHHhcCCC
Q 039757 317 MLGRAGRLEQAEKIALGIPS 336 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~ 336 (415)
.+...|+.++|...+++...
T Consensus 302 ~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 302 LYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 68888999999988876554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-10 Score=95.81 Aligned_cols=173 Identities=9% Similarity=-0.076 Sum_probs=138.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
.|.+...+..+...+.+.|++++|...|+++....|+ ...+..+..+|...|++++|...|++..+. .|+....
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~ 88 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRV 88 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchh
Confidence 4557888888999999999999999999999987554 567888999999999999999999999885 4543322
Q ss_pred HHHHHHHccCCcchHHHHHHhHh--------cCCHHHHHHHHhcCCCCCcCH-HHH-----------------HHHHHHH
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGR--------AGRLEQAEKIALGIPSEITDV-VVR-----------------RILLGAC 351 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~p~~-~~~-----------------~~l~~~~ 351 (415)
... +..+...+.. .|++++|...|+++....|+. ... ..+...|
T Consensus 89 ~~a----------~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 89 PQA----------EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp HHH----------HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 2225666777 999999999999877654532 233 4567789
Q ss_pred hhcCChHHHHHHHHHHHHcccCCC---ccHHHHHHHHHhc----------CchhhHHHHHHHHhhhcc
Q 039757 352 SFHGNVEMGERVTRKVLEMERGNG---GDYVLMYNILAGV----------GRYVDAERLRRVMDERNA 406 (415)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~ 406 (415)
...|++++|+..|+++++..|.+. ..+..++.+|... |++++|...++++.+...
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 999999999999999999988743 5788899999876 999999999999887653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-09 Score=90.93 Aligned_cols=182 Identities=8% Similarity=-0.035 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh----hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH--HHH
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF--LSV 300 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~--~~l 300 (415)
..+..+...+...|++++|...|+++....|+. ..+..+..+|.+.|++++|...|+++.+. .|+.... ...
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 344445556666666666666666666553321 34555666666666666666666666653 3333211 111
Q ss_pred HHH--HccCCc----chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHH-HH-----------------HHHHHHHhhcCC
Q 039757 301 LNA--CSHGGL----HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV-VR-----------------RILLGACSFHGN 356 (415)
Q Consensus 301 l~~--~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~~~ 356 (415)
..+ +...+. .|..+...+...|+.++|...|+++....|+.. .+ ..+...|.+.|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 111 000000 001122234457899999999998887756432 22 234567889999
Q ss_pred hHHHHHHHHHHHHcccCCC---ccHHHHHHHHHhcCchhhHHHHHHHHhhhccccCC
Q 039757 357 VEMGERVTRKVLEMERGNG---GDYVLMYNILAGVGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
+++|+..|+++++..|.++ .++..++.+|.+.|++++|.+.++.+...+.....
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 9999999999999998854 67889999999999999999999998887665443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.3e-10 Score=95.26 Aligned_cols=248 Identities=10% Similarity=-0.063 Sum_probs=159.8
Q ss_pred chHHHHHHHHHHcCCCCchhhHHHHHHHHHcC--C-ChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSL--G-FLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 85 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
.+|.+++.+..+. .++....+ .+ .+. + ++++|...|+.. ...|...|++++|.+.|++..
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Confidence 4577777777665 23322223 22 232 2 477777766554 456777888888888887764
Q ss_pred CCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC----CCHHHHHHHHHHHH
Q 039757 162 CRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA----FDIRVSNCLIDTYA 237 (415)
Q Consensus 162 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~li~~~~ 237 (415)
+- +.+.|+ ......++..+...+...|++++|...+++..+..... ....+++.+..+|.
T Consensus 65 ~~-----------~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 65 DY-----------QKKAGN-----EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp HH-----------HHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HH-----------HHHhCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 111110 01113466777777888888888888887777542111 12457888999999
Q ss_pred hc-CCHHHHHHHHHHhhhhCC---C----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc
Q 039757 238 KC-GCIFSALKLFEDISVERK---N----LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL 309 (415)
Q Consensus 238 ~~-g~~~~A~~~~~~~~~~~~---~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 309 (415)
.. |++++|...|++.....| + ..+++.+...+...|++++|+..|++............+.. ..
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~------- 200 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL-KD------- 200 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH-HH-------
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH-HH-------
Confidence 96 999999999999877522 1 35688899999999999999999999988643322211110 00
Q ss_pred chHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHH------HHHHHHHHHh--hcCChHHHHHHHHHHHHcccC
Q 039757 310 HYGCLVDMLGRAGRLEQAEKIALGIPSEITDVV------VRRILLGACS--FHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.|..+...+...|++++|...|++.....|+.. .+..++.++. ..+++++|+..|+.+...+|.
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 022366678899999999999998877534322 3444555554 456788888888776665543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-08 Score=86.74 Aligned_cols=248 Identities=10% Similarity=0.023 Sum_probs=164.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHH
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYAR 154 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 154 (415)
++-..-.|++..++.-...+. ...++ ....-+.++|...|+++... -..|.......+...+ ..+ |+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~--~~~~~-~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS--KVTDN-TLLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS--CCCCH-HHHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHHhhHHHHHHHHHHhcC--ccchH-HHHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHHHHHh-ccc----HH
Confidence 444556788877776332221 11222 22333457788888876421 1123333333333333 322 66
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH
Q 039757 155 SLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID 234 (415)
Q Consensus 155 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 234 (415)
..|++..+.+ .++..++..+..++...|++++|.+++...+..+-.+.+...+..++.
T Consensus 87 ~~l~~l~~~~----------------------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq 144 (310)
T 3mv2_B 87 EELENLLKDK----------------------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE 144 (310)
T ss_dssp HHHHHTTTTS----------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHhcC----------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence 6777665322 233444557777888899999999999998776532358888999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCC-----ChhhHHHHHHH--HHc--cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHc
Q 039757 235 TYAKCGCIFSALKLFEDISVERK-----NLVSWTSIISG--FAM--HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305 (415)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~--~~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 305 (415)
.+.+.|+.+.|.+.+++|....| +..+...|+.+ ... .+++++|..+|+++.+. .|+..+...
T Consensus 145 i~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~l------ 216 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLG------ 216 (310)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHH------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHH------
Confidence 99999999999999999988777 24555555555 333 34899999999999775 455333333
Q ss_pred cCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC----------Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC
Q 039757 306 HGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE----------IT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (415)
+..++.+.|++++|.+.++.+... .| ++.+...+|......|+ .|.++++++.+..|.+
T Consensus 217 --------Lln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 217 --------LLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp --------HHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred --------HHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 233588999999999999865442 13 55667556655556676 8899999999999887
Q ss_pred C
Q 039757 375 G 375 (415)
Q Consensus 375 ~ 375 (415)
+
T Consensus 287 p 287 (310)
T 3mv2_B 287 A 287 (310)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.2e-08 Score=93.27 Aligned_cols=344 Identities=10% Similarity=-0.005 Sum_probs=226.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC--
Q 039757 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-- 118 (415)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-- 118 (415)
..+-+..|+..+ ..++. |..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.|+
T Consensus 48 ~~d~i~~lE~~l---~~np~------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~ 117 (679)
T 4e6h_A 48 ESDVIGKLNDMI---EEQPT------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEEL 117 (679)
T ss_dssp CSCHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CC
T ss_pred CHHHHHHHHHHH---HHCcC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcc
Confidence 344556667766 66656 9999999999999999999999999999887 46678889999999888898
Q ss_pred -hhHHHHHhcccCC-----CchhhHHHHHHHHHhhCCH--------HHHHHHHhhCC------CC-ChhHHHHHHHHHHh
Q 039757 119 -LKDSSKLFDELPE-----RNLVTWNVMITGLVKWGEL--------EYARSLFEEMP------CR-NVVSWTGILDGYTR 177 (415)
Q Consensus 119 -~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~------~~-~~~~~~~li~~~~~ 177 (415)
++.+..+|++... |++..|...+....+.++. +.+.++|+... .+ +...|...+.....
T Consensus 118 ~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 118 DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp CHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 9999999998764 6777888888776666554 33446666532 12 22345544433221
Q ss_pred ---------ccCCCCc-------cCCCc---hHHH---------------------------------------------
Q 039757 178 ---------MNRSNGA-------STEPS---EITI--------------------------------------------- 193 (415)
Q Consensus 178 ---------~~~~~~a-------~~~~~---~~~~--------------------------------------------- 193 (415)
.++.+.+ +..|. ..+|
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 1111111 11110 0000
Q ss_pred ----------------------------HhHHHHHhhcC-------ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh
Q 039757 194 ----------------------------LAVLPAIWQNG-------AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK 238 (415)
Q Consensus 194 ----------------------------~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 238 (415)
...+.--...+ ..+.+..+|++.+.. .|....+|-..+..+..
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGE 355 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHh
Confidence 00000000000 012234556666665 46577778778888888
Q ss_pred cCCHHHHH-HHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCC---------CCCh--------hhHHH
Q 039757 239 CGCIFSAL-KLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGL---------KPNR--------VTFLS 299 (415)
Q Consensus 239 ~g~~~~A~-~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---------~p~~--------~~~~~ 299 (415)
.|+.++|. ++|++....-| +...|-..+...-..|++++|..+|+++..... .|+. .++..
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 89999996 99999877644 555677888888899999999999999886410 1321 01111
Q ss_pred HHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-C-cCHHHHHHHHHHHhhc-CChHHHHHHHHHHHHcccCCCc
Q 039757 300 VLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-I-TDVVVRRILLGACSFH-GNVEMGERVTRKVLEMERGNGG 376 (415)
Q Consensus 300 ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~ 376 (415)
.|...+....+.|..+.|.++|...... . +....|...+..-.+. ++.+.|.++|+..++..+.++.
T Consensus 436 ----------vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 436 ----------VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp ----------HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred ----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence 1333566667788899999999877543 1 1233443333333333 4589999999999998887777
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 377 DYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 377 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+...+......|+.+.|..+|++......
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 777888888888999999999988776554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=5.6e-10 Score=96.68 Aligned_cols=198 Identities=6% Similarity=-0.151 Sum_probs=140.1
Q ss_pred HHHHhhcCChhHHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHH
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSI 265 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~l 265 (415)
...+...|++++|...|.+..+. |-.+....+|+.+..+|...|++++|...|++..... .+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566788888888888877654 2112125789999999999999999999999987652 12 3578899
Q ss_pred HHHHHcc-CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC---H
Q 039757 266 ISGFAMH-GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD---V 341 (415)
Q Consensus 266 i~~~~~~-~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~ 341 (415)
...|... |++++|+..|++..+. .|+......... .+..+...|.+.|++++|+..|++.....|+ .
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~-------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNK-------CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 9999996 9999999999998764 221110000011 1344788899999999999999876654222 1
Q ss_pred -----HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc-----cHHHHHHHHH--hcCchhhHHHHHHHHhh
Q 039757 342 -----VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG-----DYVLMYNILA--GVGRYVDAERLRRVMDE 403 (415)
Q Consensus 342 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 403 (415)
..|..+..++...|++++|...+++..+..|.... .+..++.++. ..+++++|...++++..
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 15677788899999999999999999998876333 2344566664 45778888888876644
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.11 E-value=9.5e-10 Score=82.63 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=50.3
Q ss_pred hHhcCCHHHHHHHHhcCCCCC-cCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHH
Q 039757 318 LGRAGRLEQAEKIALGIPSEI-TDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 396 (415)
+...|++++|...++++.... .+...+..+...+...|++++|.+.++++.+..+.+...+..++.++...|++++|..
T Consensus 45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence 344444444444444332221 1334455555666666666666666666666666566666666666667777777777
Q ss_pred HHHHHhhhc
Q 039757 397 LRRVMDERN 405 (415)
Q Consensus 397 ~~~~m~~~~ 405 (415)
.++++.+.+
T Consensus 125 ~~~~~~~~~ 133 (136)
T 2fo7_A 125 YYQKALELD 133 (136)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHccC
Confidence 666665543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-08 Score=82.31 Aligned_cols=176 Identities=11% Similarity=-0.049 Sum_probs=143.8
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccC----chHHHHHHHH
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG----MGKAAVENFE 283 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~A~~~~~ 283 (415)
+|...|++..+.| ++..+..|...|...+++++|.+.|++..+. .+...+..|...|.. + ++++|..+|+
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4667777777765 8889999999999999999999999998874 467788888888888 6 8999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHh----cCCHHHHHHHHhcCCCCCcC---HHHHHHHHHHHhh---
Q 039757 284 RMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGR----AGRLEQAEKIALGIPSEITD---VVVRRILLGACSF--- 353 (415)
Q Consensus 284 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~--- 353 (415)
+..+.| +...+.. |...|.. .+++++|++.|+......|. ...+..|...|..
T Consensus 78 ~A~~~g---~~~a~~~--------------Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 78 KAVEAG---SKSGEIV--------------LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp HHHHTT---CHHHHHH--------------HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHCC---CHHHHHH--------------HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCC
Confidence 998754 2333222 5555665 88999999999988887443 6788889888888
Q ss_pred -cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhc-C-----chhhHHHHHHHHhhhccc
Q 039757 354 -HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV-G-----RYVDAERLRRVMDERNAL 407 (415)
Q Consensus 354 -~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 407 (415)
.+++++|..+|++..+. +.++..+..|..+|... | ++++|..++++..+.|..
T Consensus 141 ~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 141 GPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp SSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88999999999999988 45677888999998764 3 899999999999887754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-09 Score=92.87 Aligned_cols=166 Identities=11% Similarity=-0.090 Sum_probs=138.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
|.+...+..+...+...|++++|...|+++....| +...+..+...+...|++++|...+++.... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~-~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL-V 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH-H
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH-H
Confidence 55777888899999999999999999999988866 6778999999999999999999999998764 565443222 1
Q ss_pred HHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC--CccH
Q 039757 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN--GGDY 378 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 378 (415)
....+.+.++.++|...+++.....| +...+..+...+...|++++|+..++++.+..|.+ ...+
T Consensus 191 ------------~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 191 ------------AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp ------------HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred ------------HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 22336677788888888877765545 57789999999999999999999999999999886 7889
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 379 VLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 379 ~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
..++..+...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999887654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=86.77 Aligned_cols=161 Identities=12% Similarity=0.003 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
.+..+...+...|++++|...|++.....| +...+..+...+...|++++|...|++.... .|+. .+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~-~~~~~~~~--- 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDN-SYKSLIAK--- 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCH-HHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCCh-HHHHHHHH---
Confidence 445566778888888888888888776644 5677888888888888888888888887654 3432 22221111
Q ss_pred CCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC--CccHHHHHH
Q 039757 307 GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN--GGDYVLMYN 383 (415)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~ 383 (415)
+. +...+...+|...+++.....| +...+..+...+...|++++|...++++.+..|.. ...+..++.
T Consensus 82 --------~~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 82 --------LE-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp --------HH-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred --------HH-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 11 1122223346666666554445 56788888999999999999999999999988764 558889999
Q ss_pred HHHhcCchhhHHHHHHHHhh
Q 039757 384 ILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~ 403 (415)
++...|+.++|...+++...
T Consensus 153 ~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999887654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-09 Score=86.29 Aligned_cols=185 Identities=12% Similarity=-0.010 Sum_probs=135.5
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChh----hHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV----SWTS 264 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~ 264 (415)
...+......+...|++++|...|+.+.+..-. +.....+..+..+|.+.|++++|...|+++....|+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556677788999999999999999986321 21246788899999999999999999999988755432 3445
Q ss_pred HHHHHHc------------------cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH----ccCCcchHHHHHHhHhcC
Q 039757 265 IISGFAM------------------HGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC----SHGGLHYGCLVDMLGRAG 322 (415)
Q Consensus 265 li~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~~li~~~~~~g 322 (415)
+..++.. .|++++|...|+++.+. .|+........... .........+...|.+.|
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5555543 67999999999999885 56654322111000 000001123567789999
Q ss_pred CHHHHHHHHhcCCCCCcCH----HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc
Q 039757 323 RLEQAEKIALGIPSEITDV----VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376 (415)
Q Consensus 323 ~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 376 (415)
++++|...|+.+....|+. ..+..+..++.+.|+.++|.+.++.+...+|.+..
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 9999999999887665543 46888999999999999999999999998887543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=88.46 Aligned_cols=143 Identities=6% Similarity=-0.105 Sum_probs=93.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcch
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHY 311 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 311 (415)
...+...|++++|+..+.+.....| +...+..+...|.+.|++++|...|++..+. .|+.... |
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a-------------~ 68 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKA-------------H 68 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-------------H
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-------------H
Confidence 3444555666777777666655433 3445566667777777777777777776663 4544332 2
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHH-HHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERV-TRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
..+...|.+.|++++|+..|+......| +..+|..+...|.+.|++++|.+. ++++.+..|.++.+|......+...|
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 2355556777777777777766554434 456778888888888888765554 58888888888888888888877776
Q ss_pred c
Q 039757 390 R 390 (415)
Q Consensus 390 ~ 390 (415)
+
T Consensus 149 ~ 149 (150)
T 4ga2_A 149 E 149 (150)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-09 Score=85.71 Aligned_cols=163 Identities=13% Similarity=0.007 Sum_probs=124.1
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhhhhCC
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNC----------------LIDTYAKCGCIFSALKLFEDISVERK 257 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~~~~~~~ 257 (415)
......+...|++++|...|+...+. .|.+...+.. +..+|.+.|++++|...|++..+..|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 34445667899999999999999987 5667777777 99999999999999999999988866
Q ss_pred -ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcC--CHHHHHHHHhcC
Q 039757 258 -NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG--RLEQAEKIALGI 334 (415)
Q Consensus 258 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~ 334 (415)
+...+..+..+|...|++++|...|++..+. .|+..... ..+...|...| +.+.+...++..
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~-------------~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAAN-------------IFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHH-------------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH-------------HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999885 56654322 22444454443 345667777776
Q ss_pred CCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 335 PSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 335 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
....|....+.....++...|++++|+..|+++++..|.
T Consensus 151 ~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654333334455566677889999999999999998875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-08 Score=80.70 Aligned_cols=158 Identities=14% Similarity=0.052 Sum_probs=120.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCC
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~ 181 (415)
.+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..|++....+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----------------- 70 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY----------------- 70 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----------------
Confidence 345566778889999999999999885 356788889999999999999999999987532
Q ss_pred CCccCCCchHHHHhHHHH-HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC--
Q 039757 182 NGASTEPSEITILAVLPA-IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-- 258 (415)
Q Consensus 182 ~~a~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-- 258 (415)
|+.......... +...+....+...++...+. .|.+...+..+..++...|++++|...|+++....|+
T Consensus 71 ------p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 142 (176)
T 2r5s_A 71 ------QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ 142 (176)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred ------CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence 111111111101 11222334467788888876 5778999999999999999999999999999887654
Q ss_pred -hhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 259 -LVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 259 -~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
...+..+...+...|+.++|...|++...
T Consensus 143 ~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 143 DGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45789999999999999999999987654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5e-09 Score=78.58 Aligned_cols=129 Identities=15% Similarity=0.144 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR-VTFLSVLNACS 305 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 305 (415)
.+..+...+...|++++|..+|+++....| +...+..+...+...|++++|...++++...+ |+. ..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~------- 73 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWY------- 73 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH-------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHH-------
Confidence 345566666677777777777776665533 45556666666777777777777777766542 322 2221
Q ss_pred cCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 306 HGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
.+...+...|++++|.+.++++....| +...+..+...+...|++++|...++++.+..|
T Consensus 74 -------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 74 -------NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp -------HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred -------HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 245556677777777777766544322 455667777777777888888888877776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-10 Score=107.67 Aligned_cols=183 Identities=13% Similarity=-0.033 Sum_probs=149.2
Q ss_pred hhcCChhHHHHHHhhhh--------hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHc
Q 039757 201 WQNGAVRNCQLIHGYGE--------KRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM 271 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 271 (415)
...|++++|...+++.. +. .|.+...+..+..+|...|++++|.+.|+++.+..| +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 77899999999999998 43 576888999999999999999999999999988755 67889999999999
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHH
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGA 350 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 350 (415)
.|++++|...|++..+. .|+.... +..+...|.+.|++++ ++.|++.....| +...|..+..+
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~-------------~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAP-------------KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHH-------------HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHH-------------HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 99999999999999885 5655332 2236667899999999 999887765534 56789999999
Q ss_pred HhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCc--------hhhHHHHHHHH
Q 039757 351 CSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR--------YVDAERLRRVM 401 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~m 401 (415)
+...|++++|++.|+++.+.+|.+..++..++.++...|+ +++|.+.++.+
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999999888899999998866554 55555555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-08 Score=87.51 Aligned_cols=173 Identities=13% Similarity=0.049 Sum_probs=138.0
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCCCCh
Q 039757 89 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNV 165 (415)
Q Consensus 89 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 165 (415)
.+.+.+... .+.+...+..+...+.+.|++++|+..|++..+ | +...+..+...+.+.|++++|...|++....+
T Consensus 104 ~l~~~l~~~-lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~- 181 (287)
T 3qou_A 104 AIRALLDXV-LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD- 181 (287)
T ss_dssp HHHHHHHHH-SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-
T ss_pred HHHHHHHHH-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-
Confidence 343444333 355667777788889999999999999999864 4 56789999999999999999999999997533
Q ss_pred hHHHHHHHHHHhccCCCCccCCCch-HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039757 166 VSWTGILDGYTRMNRSNGASTEPSE-ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFS 244 (415)
Q Consensus 166 ~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (415)
|+. .........+...++.+.|...++..... .|.+...+..+...+...|++++
T Consensus 182 ----------------------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~ 237 (287)
T 3qou_A 182 ----------------------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEE 237 (287)
T ss_dssp ----------------------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHH
Confidence 221 12222233356677788888999998887 68799999999999999999999
Q ss_pred HHHHHHHhhhhCCC---hhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 245 ALKLFEDISVERKN---LVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 245 A~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
|.+.|+++....|+ ...+..++..|...|+.++|...|++...
T Consensus 238 A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 238 ALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999988664 56799999999999999999999887643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.9e-09 Score=99.25 Aligned_cols=163 Identities=10% Similarity=-0.041 Sum_probs=122.8
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVEN 281 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~ 281 (415)
.|++++|...+++..+. .|.+...+..+...|...|++++|.+.|++..+..| +...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46888999999998876 576899999999999999999999999999988755 577899999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhc---CCh
Q 039757 282 FERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFH---GNV 357 (415)
Q Consensus 282 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~ 357 (415)
+++..+. .|+.... +..+...|.+.|++++|.+.+++.....| +...+..+...+... |+.
T Consensus 80 ~~~al~~--~p~~~~~-------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~ 144 (568)
T 2vsy_A 80 LQQASDA--APEHPGI-------------ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL 144 (568)
T ss_dssp HHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHhc--CCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccH
Confidence 9999885 4554321 23367779999999999999988765534 567888899999999 999
Q ss_pred HHHHHHHHHHHHcccCCCccHHHHH
Q 039757 358 EMGERVTRKVLEMERGNGGDYVLMY 382 (415)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~l~ 382 (415)
++|.+.++++.+.++.+...|..+.
T Consensus 145 ~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 145 DVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999998877776665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-08 Score=97.69 Aligned_cols=180 Identities=11% Similarity=-0.012 Sum_probs=140.7
Q ss_pred HhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC
Q 039757 145 VKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF 224 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (415)
...|++++|++.|++...... +......+.+...+..+..++...|++++|...++.+.+. .|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~--------------~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~ 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGAL--------------DADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGW 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCC
T ss_pred ccccCHHHHHHHHHHhhhhcc--------------cccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--Ccc
Confidence 788999999999998751000 0000001334567778888889999999999999999987 577
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
+...+..+..+|...|++++|.+.|++.....| +...|..+..+|.+.|++++ ...|++..+. .|+....
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a------ 536 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISA------ 536 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHH------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHH------
Confidence 899999999999999999999999999988866 56789999999999999999 9999999875 5654331
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCC
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGN 356 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 356 (415)
|..+...|.+.|++++|.+.|++.....|+ ...+..+..++...++
T Consensus 537 -------~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 537 -------AFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred -------HHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 333777799999999999999999887665 4577778888777555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=83.00 Aligned_cols=189 Identities=13% Similarity=0.041 Sum_probs=126.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhh
Q 039757 137 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216 (415)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 216 (415)
+......+...|++++|+..|++..+.++........ .... .. ..........+..++...|++++|...|+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--~~~~---~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYW--TNVD---KN-SEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHH--HHSC---TT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH--hhhc---ch-hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344455667788888888887776433221111100 0000 00 1112223344778889999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCc--hHHHHHHHHHHHhcCCCCC
Q 039757 217 EKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGM--GKAAVENFERMQKVGLKPN 293 (415)
Q Consensus 217 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~ 293 (415)
.+. .|.+...+..+..+|...|++++|...|+++....| +..+|..+..+|...|+ .+.+...++... .|+
T Consensus 81 l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~ 154 (208)
T 3urz_A 81 LQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPT 154 (208)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCC
T ss_pred HHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCC
Confidence 998 677999999999999999999999999999988866 57789999888876654 344555565543 355
Q ss_pred hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHH
Q 039757 294 RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLG 349 (415)
Q Consensus 294 ~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 349 (415)
...+.... +...+...|++++|...|++.....|+......+.+
T Consensus 155 ~~~~a~~~------------~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 155 KMQYARYR------------DGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHH------------HHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred chhHHHHH------------HHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44433211 333466689999999999998888788665544443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.8e-09 Score=98.39 Aligned_cols=154 Identities=11% Similarity=-0.034 Sum_probs=117.1
Q ss_pred cCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHH
Q 039757 239 CGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDM 317 (415)
Q Consensus 239 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~ 317 (415)
.|++++|.+.|++..+..| +...+..+...|...|++++|...|++..+. .|+.... +..+...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-------------~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEA-------------VARLGRV 66 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHH-------------HHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-------------HHHHHHH
Confidence 4788999999999887755 5788999999999999999999999999885 5654332 2336777
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhc---Cchhh
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV---GRYVD 393 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~ 393 (415)
|...|++++|.+.+++.....| +...+..+..++...|++++|.+.++++.+..|.+...+..++.++... |++++
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHH
Confidence 9999999999999988766544 5678999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhhccc
Q 039757 394 AERLRRVMDERNAL 407 (415)
Q Consensus 394 A~~~~~~m~~~~~~ 407 (415)
|.+.+++..+.+..
T Consensus 147 A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 147 LSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.92 E-value=8.7e-09 Score=88.50 Aligned_cols=194 Identities=12% Similarity=-0.016 Sum_probs=139.5
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
+...+..+...+...|++++|...|+...+. .|.+...+..+..+|.+.|++++|...+++.....| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456777888889999999999999999987 577899999999999999999999999999988755 5678999999
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChh-hHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRV-TFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRI 346 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 346 (415)
+|...|++++|...|++..+. .|+.. .+...+.. .....+...+.. .-..... ++......
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~~--~~~~i~~~ 142 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPS-----------ALRIAKKKRWNS---IEERRIH--QESELHSY 142 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHH-----------HHHHHHHHHHHH---HHHTCCC--CCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHH-----------HHHHHHHHHHHH---HHHHHHh--hhHHHHHH
Confidence 999999999999999998764 23221 11111100 001222222222 2222111 23333333
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhc-CchhhHHHHHHHHhhh
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGV-GRYVDAERLRRVMDER 404 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 404 (415)
+.. + ..|+.++|++.+++..+..|.+......+...+.+. +++++|.++|+++.+.
T Consensus 143 l~~-l-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 143 LTR-L-IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHH-H-HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHH-H-HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 322 2 368999999999999988887666666666666665 7899999999988764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-07 Score=77.11 Aligned_cols=190 Identities=8% Similarity=-0.067 Sum_probs=120.2
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHH-------HHHHHhcCCCchHHHHHHHHHHcCCCCc-------
Q 039757 37 LADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFL-------IRTCVTLSYPNLGTQLHAVISKVGFQSH------- 102 (415)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~g~~~~------- 102 (415)
..++...|.+.|.++. ...+. ....|..+ ...+.+.++...+...+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~---~~dP~------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~ 86 (282)
T 4f3v_A 18 LPMSEARSLDLFTEIT---NYDES------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIA 86 (282)
T ss_dssp TTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEE
T ss_pred cCCCHHHHHHHHHHHH---HhChh------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhc
Confidence 5899999999999999 66666 77888877 4556666666666665555433 2222
Q ss_pred ---------------hhhHHHHHHHHHcCCChhHHHHHhcccCC--CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCC-C
Q 039757 103 ---------------VYVNTALVNMYVSLGFLKDSSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCR-N 164 (415)
Q Consensus 103 ---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~ 164 (415)
......+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... +
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d 166 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPD 166 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence 12234456777788888888888888864 44336666667788888888888888755321 1
Q ss_pred hhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC-CHHHHHHHHHHHHhcCCHH
Q 039757 165 VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF-DIRVSNCLIDTYAKCGCIF 243 (415)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 243 (415)
. ......+..+..++...|++++|...|++.......|. ..........++.+.|+.+
T Consensus 167 ~---------------------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~d 225 (282)
T 4f3v_A 167 K---------------------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES 225 (282)
T ss_dssp H---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHH
T ss_pred c---------------------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHH
Confidence 0 00122444555566666666666666666654322132 2334455556666666666
Q ss_pred HHHHHHHHhhhhCCC
Q 039757 244 SALKLFEDISVERKN 258 (415)
Q Consensus 244 ~A~~~~~~~~~~~~~ 258 (415)
+|..+|+++....|+
T Consensus 226 eA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 226 AAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCc
Confidence 666666666665454
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.8e-08 Score=85.72 Aligned_cols=199 Identities=8% Similarity=-0.092 Sum_probs=135.0
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCC
Q 039757 38 ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG 117 (415)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 117 (415)
.|++++|.+++++..+ .... .. +...++++.|...|+.+ ...|...|
T Consensus 4 ~~~~~eA~~~~~~a~k---~~~~------~~---------~~~~~~~~~A~~~~~~a---------------~~~~~~~g 50 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEK---YLKT------SF---------MKWKPDYDSAASEYAKA---------------AVAFKNAK 50 (307)
T ss_dssp HHHHHHHHHHHHHHHH---HHCC------CS---------SSCSCCHHHHHHHHHHH---------------HHHHHHTT
T ss_pred cchHHHHHHHHHHHHH---Hccc------cc---------cCCCCCHHHHHHHHHHH---------------HHHHHHcC
Confidence 5677888888887763 1111 10 01135666666666554 34566778
Q ss_pred ChhHHHHHhcccCC-----Cc----hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC
Q 039757 118 FLKDSSKLFDELPE-----RN----LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP 188 (415)
Q Consensus 118 ~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~ 188 (415)
++++|...|.+..+ .+ ..+|+.+...|.+.|++++|+..|++..+- +.+.|+ ...
T Consensus 51 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-----------~~~~g~-----~~~ 114 (307)
T 2ifu_A 51 QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM-----------YVENGT-----PDT 114 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-----------HHTTTC-----HHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------HHHcCC-----HHH
Confidence 88877777776543 11 346788888888889988888888876421 111111 001
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC---
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFN----AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER---KN--- 258 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~--- 258 (415)
...++..+...+.. |++++|...|++..+.... .....++..+...|...|++++|.+.|++..... ++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 13456677777877 9999999999888764211 1125678889999999999999999999987752 12
Q ss_pred -hhhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 259 -LVSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 259 -~~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
...+..+..++...|++++|...|++..
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2356777788888999999999999988
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.7e-08 Score=78.79 Aligned_cols=178 Identities=11% Similarity=-0.018 Sum_probs=136.4
Q ss_pred chHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC-CchhhHHHHHHHHHhhC----CHHHHHHHHhh
Q 039757 85 NLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE-RNLVTWNVMITGLVKWG----ELEYARSLFEE 159 (415)
Q Consensus 85 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~a~~~~~~ 159 (415)
.+|.+.|+...+.| +...+..|...|...+++++|...|+...+ .+...+..|...|.. + ++++|++.|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35778888887765 456677778888888999999999988765 466778888888877 6 89999999988
Q ss_pred CCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhh----cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHH
Q 039757 160 MPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQ----NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDT 235 (415)
Q Consensus 160 m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 235 (415)
..+++ +...+..+...+.. .+++++|...|+...+.|.....+..+..|..+
T Consensus 79 A~~~g------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~ 134 (212)
T 3rjv_A 79 AVEAG------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLI 134 (212)
T ss_dssp HHHTT------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHH
T ss_pred HHHCC------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 75433 33344455555554 778999999999999885211127888899999
Q ss_pred HHh----cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHcc-C-----chHHHHHHHHHHHhcCC
Q 039757 236 YAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAMH-G-----MGKAAVENFERMQKVGL 290 (415)
Q Consensus 236 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~A~~~~~~m~~~g~ 290 (415)
|.. .+++++|...|++..+.+.+...+..|...|... | ++++|...|++..+.|.
T Consensus 135 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 135 YASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988 8899999999999987655667788888888653 3 89999999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.87 E-value=6e-07 Score=77.25 Aligned_cols=230 Identities=5% Similarity=-0.054 Sum_probs=171.1
Q ss_pred HhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC--CCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 34 FYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS--YPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 34 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
...+....++|+.+++.++ ...+. +..+|+.--..+...+ +++++++.++.+.... +-+..+|+..-.
T Consensus 42 ~~~~~e~s~~aL~~t~~~L---~~nP~------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~ 111 (306)
T 3dra_A 42 LMKAEEYSERALHITELGI---NELAS------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQL 111 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHH---HHCcH------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHH
Confidence 3333444579999999999 67666 7778898888888888 9999999999998875 345666776665
Q ss_pred HH----HcC---CChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHH--HHHHHHhhCCCCChhHHHHHHHHHHhcc
Q 039757 112 MY----VSL---GFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELE--YARSLFEEMPCRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 112 ~~----~~~---g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~li~~~~~~~ 179 (415)
.+ ... +++++++.+++.+.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.|+.
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~------------- 178 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK------------- 178 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-------------
Confidence 55 555 789999999999875 46778888877888888888 999999998754422
Q ss_pred CCCCccCCCchHHHHhHHHHHhhcCC------hhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHh
Q 039757 180 RSNGASTEPSEITILAVLPAIWQNGA------VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI-FSALKLFEDI 252 (415)
Q Consensus 180 ~~~~a~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 252 (415)
+...|+.-...+...+. ++++...+..+... .|.+...|+-+...+.+.|+. +.+..+.+++
T Consensus 179 ---------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 179 ---------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp ---------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred ---------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 22223222222233333 77888888888887 677999999999999888874 4456677766
Q ss_pred hhh----CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 253 SVE----RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 253 ~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
... ..+...+..+...|.+.|+.++|.++++.+.+. +.|-..-|-
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW 296 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFW 296 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHH
Confidence 543 246778899999999999999999999998753 355555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=89.11 Aligned_cols=165 Identities=7% Similarity=-0.072 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
.|......|...|++++|.+.|.+..... .+ ..+|+.+...|...|++++|...|++....-..... ....
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--~~~~ 115 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT--PDTA 115 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC--HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC--HHHH
Confidence 45556667777788888888877765541 11 345777777788888888888888776543111111 1111
Q ss_pred HHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC
Q 039757 301 LNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-------DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 301 l~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.. .+..+...|.. |++++|+..|++.....| ...++..+...|...|++++|+..++++.+..+.
T Consensus 116 a~-------~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 116 AM-------ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HH-------HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 13346666767 888888777765543311 1346677777788888888888888888776554
Q ss_pred CC------ccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 374 NG------GDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 374 ~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+. ..+..++.++...|++++|...+++..
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 22 245556666777788888888887766
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.6e-09 Score=80.05 Aligned_cols=77 Identities=6% Similarity=-0.134 Sum_probs=35.4
Q ss_pred HHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHH
Q 039757 199 AIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 277 (415)
.|.+.|++++|...|++.++. .|.+..+|..+..+|...|++++|...|++..+..| +...|..+...|.+.|++++
T Consensus 40 ~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 333344444444444444433 233445555555555555555555555555444433 33444445555555554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-07 Score=72.82 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=103.4
Q ss_pred HHHHHHHHHhccCCCCcc-CCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039757 168 WTGILDGYTRMNRSNGAS-TEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSA 245 (415)
Q Consensus 168 ~~~li~~~~~~~~~~~a~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (415)
...+.+.+...+.+.++. ..| +...+..+...+.+.|++++|...|+...+. .|.++..|..+..+|...|++++|
T Consensus 12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A 89 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQA 89 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHH
Confidence 344555555555556655 223 4456778888899999999999999999998 688999999999999999999999
Q ss_pred HHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh
Q 039757 246 LKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295 (415)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 295 (415)
.+.|++.....| +...|..+..+|...|++++|...|++..+. .|+..
T Consensus 90 i~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 90 ADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999988866 5788999999999999999999999999885 46654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-06 Score=81.28 Aligned_cols=337 Identities=9% Similarity=-0.084 Sum_probs=190.3
Q ss_pred hhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC-C
Q 039757 5 NNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS-Y 83 (415)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~-~ 83 (415)
...|+++|...+..- |. |+++.+..+|++.. .. . | +...|..-+....+.+ .
T Consensus 11 i~~aR~vyer~l~~~---P~--------------~~~e~~~~iferal---~~--~--p---s~~LW~~Y~~f~~~~~~~ 63 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY---MS--------------KDYRSLESLFGRCL---KK--S--Y---NLDLWMLYIEYVRKVSQK 63 (493)
T ss_dssp -CCHHHHHHHHHHHH---HT--------------TCHHHHHHHHHHHS---TT--C--C---CHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHC---CC--------------CCHHHHHHHHHHHh---cc--C--C---CHHHHHHHHHHHHHhCch
Confidence 555666666655433 33 88999999999987 31 2 5 8889999988887777 3
Q ss_pred CchHHHHHHHHHHc-CCC-CchhhHHHHHHHHHc----CCChhHHHHHhcccCC-Cc---hhhHHHHHHHHHhhCCHHHH
Q 039757 84 PNLGTQLHAVISKV-GFQ-SHVYVNTALVNMYVS----LGFLKDSSKLFDELPE-RN---LVTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 84 ~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~---~~~~~~li~~~~~~g~~~~a 153 (415)
.+....+|+.++.. |.. .+...|...+..+.. .++++.+.++|+.... |. ...|...... .+......+
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~ 142 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITG 142 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccH
Confidence 56788889888754 433 366778877776542 3568889999988765 31 1122222211 111112222
Q ss_pred HHHHhhCCCCC----hhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhc--C-----ChhHHHHHHhhhhhcCCC
Q 039757 154 RSLFEEMPCRN----VVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQN--G-----AVRNCQLIHGYGEKRGFN 222 (415)
Q Consensus 154 ~~~~~~m~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~--~-----~~~~a~~~~~~~~~~~~~ 222 (415)
.+++.+.. |. ...|..+....- ..+...|...+.--... + ..+.+..+|+.++.. .
T Consensus 143 ~~~~~~~~-~~y~~ar~~y~~~~~~~~----------~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~ 209 (493)
T 2uy1_A 143 KKIVGDTL-PIFQSSFQRYQQIQPLIR----------GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--F 209 (493)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHH----------TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHh-HHHHHHHHHHHHHHHHHh----------hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--C
Confidence 22222210 00 000111111000 00111222222221111 0 134567788888886 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcC---------CCCC
Q 039757 223 AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG---------LKPN 293 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---------~~p~ 293 (415)
|..+.+|...+..+...|+.++|..+|++.... |....... .|....+.++. ++.+.+.- ..+.
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcc
Confidence 668899999999999999999999999999888 75443221 22222111222 33332210 0111
Q ss_pred hhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhh-cCChHHHHHHHHHHHHcc
Q 039757 294 RVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSF-HGNVEMGERVTRKVLEME 371 (415)
Q Consensus 294 ~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~ 371 (415)
.. ... .|...+..+.+.+..+.|..+|+.. .. .++...|......-.. .++.+.|..+|+...+..
T Consensus 283 ~~-~~~----------lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 283 KE-LDL----------LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp HH-HHH----------HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred cc-cHH----------HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 11 111 2334566666778899999999887 33 1233444332222222 236999999999999887
Q ss_pred cCCCccHHHHHHHHHhcCchhhHHHHHHHH
Q 039757 372 RGNGGDYVLMYNILAGVGRYVDAERLRRVM 401 (415)
Q Consensus 372 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 401 (415)
+.++..+...++.....|+.+.|..+++.+
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666777777778888888777765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-07 Score=76.92 Aligned_cols=52 Identities=8% Similarity=-0.088 Sum_probs=28.5
Q ss_pred HHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhC
Q 039757 109 LVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 160 (415)
Q Consensus 109 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (415)
+...+...|++++|...|++..+++...|..+...+.+.|++++|++.|++.
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 63 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS 63 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.1e-07 Score=73.26 Aligned_cols=131 Identities=10% Similarity=-0.098 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHh
Q 039757 135 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHG 214 (415)
Q Consensus 135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (415)
..+..+...+...|++++|...|++...+ +...+..+...+...|++++|...++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~ 61 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP-------------------------HSRICFNIGCMYTILKNMTEAEKAFT 61 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC-------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC-------------------------ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34667788889999999999999998543 44567777778888999999999999
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-Ch----------------hhHHHHHHHHHccCchHH
Q 039757 215 YGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NL----------------VSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 215 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~----------------~~~~~li~~~~~~~~~~~ 277 (415)
...+. .|.+...+..+..+|...|++++|.+.|++.....| +. ..+..+..+|...|++++
T Consensus 62 ~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 139 (213)
T 1hh8_A 62 RSINR--DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK 139 (213)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH
Confidence 99987 466889999999999999999999999999987533 22 678899999999999999
Q ss_pred HHHHHHHHHhcCCCCCh
Q 039757 278 AVENFERMQKVGLKPNR 294 (415)
Q Consensus 278 A~~~~~~m~~~g~~p~~ 294 (415)
|...|++..+. .|+.
T Consensus 140 A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 140 AEEQLALATSM--KSEP 154 (213)
T ss_dssp HHHHHHHHHTT--CCSG
T ss_pred HHHHHHHHHHc--Cccc
Confidence 99999999885 4544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-07 Score=79.75 Aligned_cols=164 Identities=12% Similarity=-0.040 Sum_probs=119.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhCCC-h------hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 231 CLIDTYAKCGCIFSALKLFEDISVERKN-L------VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
..+..+...|++++|..++++.....+. . ..+..+...+...|++++|...|++........+... ..+.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~--~~~~- 156 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--QNLY- 156 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--HHHH-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--HHHH-
Confidence 3467788889999999999988775321 1 1234566677778899999999999887433222221 1111
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC-------CCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC-
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS-------EIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN- 374 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 374 (415)
.++.+...|...|++++|...|+++.. ..+ ...++..+...|.+.|++++|+..+++.++..+..
T Consensus 157 ------~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 157 ------IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 144578889999999999988877652 212 23478889999999999999999999998866442
Q ss_pred -----CccHHHHHHHHHhcCc-hhhHHHHHHHHhh
Q 039757 375 -----GGDYVLMYNILAGVGR-YVDAERLRRVMDE 403 (415)
Q Consensus 375 -----~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 403 (415)
..+|..++.+|.+.|+ +++|.+.+++...
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4678899999999995 6999999888764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-08 Score=76.37 Aligned_cols=94 Identities=9% Similarity=-0.050 Sum_probs=85.8
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
.+...+.+.|++++|...|+......| +...|..+..+|...|++++|+..|+++.+..|.++..|..++.+|...|++
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 366778999999999999998876645 6779999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcc
Q 039757 392 VDAERLRRVMDERNA 406 (415)
Q Consensus 392 ~~A~~~~~~m~~~~~ 406 (415)
++|...|++..+...
T Consensus 121 ~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 121 LKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999887653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.7e-06 Score=72.31 Aligned_cols=225 Identities=6% Similarity=-0.038 Sum_probs=163.2
Q ss_pred hHHHHHHhHhhccCCcch-HHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHH----H
Q 039757 7 VTTRIHSHLLTTNSLLHH-TLLFNTLLHFYSLAD--SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC----V 79 (415)
Q Consensus 7 ~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~----~ 79 (415)
.|..+...++... |+ ..+|+.--..+...| +++++++.++.+. ...++ +..+|+.--..+ .
T Consensus 51 ~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L---~~nPk------~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 51 RALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA---LDNEK------NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH---HHCTT------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH---HHCcc------cHHHHHHHHHHHHHHHH
Confidence 4566666665544 44 345888888888888 9999999999999 77766 777887766666 5
Q ss_pred hc---CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh--HHHHHhcccCC---CchhhHHHHHHHHHhhCC--
Q 039757 80 TL---SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK--DSSKLFDELPE---RNLVTWNVMITGLVKWGE-- 149 (415)
Q Consensus 80 ~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-- 149 (415)
.. +++++++++++.+.+.. +-+..+|+....++.+.|.++ ++++.++.+.+ .|...|+.....+.+.|.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 55 78999999999999876 557888988888888899988 99999999886 466788877777777666
Q ss_pred ----HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCC-hhHHHHHHhhhhhcC-CCC
Q 039757 150 ----LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGA-VRNCQLIHGYGEKRG-FNA 223 (415)
Q Consensus 150 ----~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~-~~~ 223 (415)
++++++.++++...+ +-+...++.....+.+.|+ .+.+..+...+...+ ..+
T Consensus 198 ~~~~~~eEl~~~~~aI~~~----------------------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC----------------------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV 255 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC----------------------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE
T ss_pred hhhhHHHHHHHHHHHHHhC----------------------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC
Confidence 888888888776322 2244444444444444444 333445555555432 235
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CC-ChhhHHHHH
Q 039757 224 FDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RK-NLVSWTSII 266 (415)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~li 266 (415)
.+...+..++.+|.+.|+.++|.++++.+.+. .| ....|+..+
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 58889999999999999999999999999863 33 344555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-07 Score=79.00 Aligned_cols=169 Identities=11% Similarity=-0.044 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-h------hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC-Chhh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN-L------VSWTSIISGFAMHGMGKAAVENFERMQKVGLKP-NRVT 296 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~ 296 (415)
....+...+..+...|++++|.+.+++..+..+. . ..+..+...+...|++++|...+++........ +...
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 3445556778889999999999999887765332 1 224456667788899999999999987642221 1111
Q ss_pred HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC---CCcC-----HHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 039757 297 FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS---EITD-----VVVRRILLGACSFHGNVEMGERVTRKVL 368 (415)
Q Consensus 297 ~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 368 (415)
... .|+.+...|...|++++|...|++... ..|+ ..++..+...|...|++++|+..+++..
T Consensus 154 ---~~~-------~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 154 ---NLY-------IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp ---HHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 144588889999999999999877652 1222 2588889999999999999999999998
Q ss_pred HcccC------CCccHHHHHHHHHhcCchhhH-HHHHHHHhh
Q 039757 369 EMERG------NGGDYVLMYNILAGVGRYVDA-ERLRRVMDE 403 (415)
Q Consensus 369 ~~~~~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 403 (415)
+.... -..+|..++.+|.+.|++++| ...+++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 76532 145788899999999999999 777776543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.4e-08 Score=85.38 Aligned_cols=165 Identities=12% Similarity=-0.045 Sum_probs=100.5
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
.+++++|...++..... .|.+...+..+...|.+.|++++|...|++.....|+...+ ..+.+..+
T Consensus 126 L~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~- 191 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQKA- 191 (336)
T ss_dssp EEEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHHHH-
T ss_pred EeecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHHHH-
Confidence 44555666555555443 34466777888888888888888888888877764433100 00000000
Q ss_pred HHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHH
Q 039757 283 ERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGE 361 (415)
Q Consensus 283 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 361 (415)
..+. ... |..+...|.+.|++++|+..+++.....| +...|..+..+|...|++++|+
T Consensus 192 ~~~~-------~~~--------------~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 250 (336)
T 1p5q_A 192 QALR-------LAS--------------HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR 250 (336)
T ss_dssp HHHH-------HHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHH-------HHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 0000 011 22244455566666666666655443323 4556777777778888888888
Q ss_pred HHHHHHHHcccCCCccHHHHHHHHHhcCchhhH-HHHHHHHh
Q 039757 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDA-ERLRRVMD 402 (415)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 402 (415)
..|+++++..|.+..++..+..++.+.|++++| ..+++.|.
T Consensus 251 ~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 251 ADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777788888888888888777 44555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.2e-08 Score=72.43 Aligned_cols=96 Identities=6% Similarity=-0.067 Sum_probs=86.2
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
+..+...|.+.|++++|++.|++.....| +...|..+..++...|++++|+..++++++.+|.+...|..++.+|...|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 34477789999999999999998765534 67799999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhhhcc
Q 039757 390 RYVDAERLRRVMDERNA 406 (415)
Q Consensus 390 ~~~~A~~~~~~m~~~~~ 406 (415)
++++|.+.|++..+.+.
T Consensus 96 ~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 96 EWSKAQRAYEDALQVDP 112 (126)
T ss_dssp CHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHCc
Confidence 99999999999887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.9e-07 Score=66.62 Aligned_cols=106 Identities=9% Similarity=-0.053 Sum_probs=93.6
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+......+.+.|++++|...|++.++. .|.+..+|..+..+|.+.|++++|++.|++..+..| +...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 356777888999999999999999999987 677999999999999999999999999999988755 57789999999
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhhHHH
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
|...|++++|...|++..+. .|+......
T Consensus 91 ~~~~~~~~~A~~~~~~al~l--~P~~~~a~~ 119 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV--DPSNEEARE 119 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CcCCHHHHH
Confidence 99999999999999999884 677665433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.3e-07 Score=76.30 Aligned_cols=167 Identities=9% Similarity=-0.111 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C-c------hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R-N------LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDG 174 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~ 174 (415)
..+...+..+...|++++|.+.++...+ + . ...+..+...+...|++++|+..|++..+.....
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------- 148 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG------- 148 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-------
Confidence 3444455566666666666666654321 1 0 1123344555566677777777766553210000
Q ss_pred HHhccCCCCccCCC-chHHHHhHHHHHhhcCChhHHHHHHhhhhhcC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 039757 175 YTRMNRSNGASTEP-SEITILAVLPAIWQNGAVRNCQLIHGYGEKRG-FNAF----DIRVSNCLIDTYAKCGCIFSALKL 248 (415)
Q Consensus 175 ~~~~~~~~~a~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 248 (415)
.... ...+++.+...+...|++++|...+++..+.. ..+. ...++..+..+|...|++++|...
T Consensus 149 ----------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~ 218 (293)
T 2qfc_A 149 ----------IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp ----------SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence 0001 12355666666777777777777777666210 0121 125788899999999999999999
Q ss_pred HHHhhhhCCC-------hhhHHHHHHHHHccCchHHH-HHHHHHHHh
Q 039757 249 FEDISVERKN-------LVSWTSIISGFAMHGMGKAA-VENFERMQK 287 (415)
Q Consensus 249 ~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A-~~~~~~m~~ 287 (415)
+++.....++ ..+|..+..+|...|++++| ...+++...
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 9987654111 45688889999999999999 777777653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.8e-08 Score=82.81 Aligned_cols=187 Identities=9% Similarity=-0.124 Sum_probs=142.8
Q ss_pred hcCChhHHHHHHhhhhhcCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHhhhhCCCh---------------
Q 039757 202 QNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL-------IDTYAKCGCIFSALKLFEDISVERKNL--------------- 259 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~--------------- 259 (415)
..++...|.+.|.++.+. .|.....|..+ ...+...++..++...+.......|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 589999999999999998 68788899888 566666666666666666655532211
Q ss_pred -------hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHh
Q 039757 260 -------VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIAL 332 (415)
Q Consensus 260 -------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (415)
..+-.+...+...|++++|.++|+.+... .|+.. .... +...+.+.+++++|+..|+
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~--~~~~------------~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHL--VAWM------------KAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHH--HHHH------------HHHHHHHTTCHHHHHHHHT
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchH--HHHH------------HHHHHHHcCCHHHHHHHHH
Confidence 12345677888999999999999998764 46554 1111 4446899999999999998
Q ss_pred cCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHccc-C--CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 333 GIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMER-G--NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 333 ~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
..... |+ ...+..+..++...|++++|+..|++...... | .......+..++.+.|+.++|..+|+++...+
T Consensus 160 ~a~~~-~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 160 SAGKW-PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TGGGC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred Hhhcc-CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66554 32 23677888899999999999999999985442 2 33567888999999999999999999998765
Q ss_pred cc
Q 039757 406 AL 407 (415)
Q Consensus 406 ~~ 407 (415)
..
T Consensus 239 P~ 240 (282)
T 4f3v_A 239 PE 240 (282)
T ss_dssp CC
T ss_pred Cc
Confidence 43
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=72.49 Aligned_cols=87 Identities=8% Similarity=-0.150 Sum_probs=53.3
Q ss_pred HhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH--HHHhcCchhh
Q 039757 317 MLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN--ILAGVGRYVD 393 (415)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~ 393 (415)
.+...|++++|...+++.....| +...+..+..++...|++++|...++++.+..|.+...+..+.. .+.+.|++++
T Consensus 56 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 135 (166)
T 1a17_A 56 AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443332212 44566666777777777788888887777777766666543333 3667788888
Q ss_pred HHHHHHHHhh
Q 039757 394 AERLRRVMDE 403 (415)
Q Consensus 394 A~~~~~~m~~ 403 (415)
|...+++...
T Consensus 136 A~~~~~~~~~ 145 (166)
T 1a17_A 136 AIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHcccchHH
Confidence 8777776543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.64 E-value=2.8e-06 Score=78.78 Aligned_cols=340 Identities=8% Similarity=-0.065 Sum_probs=193.9
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh-
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADS-PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT- 80 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~- 80 (415)
++.+.++++|..-+.. .|++..|...+....+.++ .+....+|+.... .-|.. |. +...|...+..+..
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~--~vg~d--~~--s~~iW~~Yi~f~~~~ 98 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG--QFENY--WD--SYGLYKEYIEEEGKI 98 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHH--HSTTC--TT--CHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH--HcCCC--cc--cHHHHHHHHHHHHhc
Confidence 4677889999988874 4899999999998888764 4667788888874 33433 32 66777777776542
Q ss_pred ---cCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcc--------------cCC----CchhhHHH
Q 039757 81 ---LSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE--------------LPE----RNLVTWNV 139 (415)
Q Consensus 81 ---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------------~~~----~~~~~~~~ 139 (415)
.++.+.+..+|+.++......-...|......- .......+.+++.+ +.. .+...|..
T Consensus 99 ~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~ 177 (493)
T 2uy1_A 99 EDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAAR 177 (493)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 356778999999998743221222333332211 11112222222221 110 01112222
Q ss_pred HHHHHHhhC--C-----HHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHH
Q 039757 140 MITGLVKWG--E-----LEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLI 212 (415)
Q Consensus 140 li~~~~~~g--~-----~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 212 (415)
.+..-...+ - .+.+..+|+++.. . .+.....|...+.-+.+.|+.+.|..+
T Consensus 178 y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~-----------~-----------~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 178 LIDLEMENGMKLGGRPHESRMHFIHNYILD-----------S-----------FYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHTCTTCCCHHHHHHHHHHHHHHHHH-----------H-----------TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcCCccCcchhhHHHHHHHHHHHHH-----------c-----------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 222111000 0 1112222222221 0 233456666667777788999999999
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------------CCChhhHHHHHHHHHccCchHHH
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE--------------RKNLVSWTSIISGFAMHGMGKAA 278 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~~~li~~~~~~~~~~~A 278 (415)
|+..... |.+...+.. |+...+.++. ++.+... +.....|-..+....+.++.+.|
T Consensus 236 ~erAi~~---P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 236 VERGIEM---SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHH---CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHhC---CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 9999987 545544432 2222111221 2222111 01124466667766677889999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCCh
Q 039757 279 VENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNV 357 (415)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~ 357 (415)
..+|++. .. |. .++...+.. +.+.. ...++.+.|..+|+......|+ ...|...+......|+.
T Consensus 306 R~i~~~A-~~---~~-~~~~v~i~~---------A~lE~-~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 306 RKLFIEL-GN---EG-VGPHVFIYC---------AFIEY-YATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHH-TT---SC-CCHHHHHHH---------HHHHH-HHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHh-hC---CC-CChHHHHHH---------HHHHH-HHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 9999988 32 22 233322110 12222 2234689999998876554343 44566677777788999
Q ss_pred HHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 358 EMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
+.|..+|+++ ......|...+..-...|+.+.+..+++++.+
T Consensus 371 ~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999987 23445677777777778999999888888775
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=6.6e-06 Score=71.61 Aligned_cols=240 Identities=8% Similarity=-0.001 Sum_probs=162.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC-CCchHHHHHHHHHHcCCCCchhhH
Q 039757 28 FNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQSHVYVN 106 (415)
Q Consensus 28 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~ 106 (415)
++.+-....+.+..++|+++++.+. ...+. +..+|+.--..+...| .+++++++++.+.... +-+..+|
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L---~~nP~------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW 126 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIV---RMNPA------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVW 126 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH---HhCch------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHH
Confidence 4444444455556688999999999 77766 7778888888888888 5999999999999875 4567788
Q ss_pred HHHHHHHHcC-C-ChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHH--------HHHHHHhhCCCCC---hhHHHH
Q 039757 107 TALVNMYVSL-G-FLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELE--------YARSLFEEMPCRN---VVSWTG 170 (415)
Q Consensus 107 ~~li~~~~~~-g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~---~~~~~~ 170 (415)
+..-.++.+. + ++++++++++.+.+ .|..+|+--.-.+.+.|.++ ++++.++++.+.+ ...|+.
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8887777776 7 88999999999987 35567776655555555555 8888888877533 333444
Q ss_pred HHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCH--------
Q 039757 171 ILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI-------- 242 (415)
Q Consensus 171 li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-------- 242 (415)
....+.+.++... ....++++...+..+... .|.|...|+-+-..+.+.|+.
T Consensus 207 R~~lL~~l~~~~~------------------~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 207 RWYLRVSRPGAET------------------SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp HHHHHTTSTTCCC------------------CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred HHHHHHhcccccc------------------chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 3333333222100 001256777788777776 577888888877777776653
Q ss_pred ------------HHHHHHHHHhhhhC-------CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 243 ------------FSALKLFEDISVER-------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 243 ------------~~A~~~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
....++..++.... ++......|+..|...|+.++|.++++.+.+. ..|-..-|-
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw 340 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYW 340 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHH
Confidence 33444444443322 45667888999999999999999999998643 445444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=79.99 Aligned_cols=93 Identities=4% Similarity=-0.184 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHH
Q 039757 68 SFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGL 144 (415)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~ 144 (415)
...+..+...+...|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|+..++...+ | +...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444445555555555555555555554442 22444455555555555555555555555443 2 334455555555
Q ss_pred HhhCCHHHHHHHHhhCC
Q 039757 145 VKWGELEYARSLFEEMP 161 (415)
Q Consensus 145 ~~~g~~~~a~~~~~~m~ 161 (415)
...|++++|...|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.3e-07 Score=71.73 Aligned_cols=91 Identities=9% Similarity=0.018 Sum_probs=56.5
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCC---Cc-----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--C----CccHH
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSE---IT-----DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--N----GGDYV 379 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~---~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~~ 379 (415)
+...|...|++++|.+.+++.... .+ ....+..+...+...|++++|...+++..+.... + ..++.
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 445555666666665555443222 12 1235666777777788888888888877755422 1 12356
Q ss_pred HHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 380 LMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 380 ~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.++.++...|++++|.+.+++..+.
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 7777788888888888877776553
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-06 Score=72.59 Aligned_cols=212 Identities=10% Similarity=0.055 Sum_probs=136.5
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCch---hhHHHHHHHHHhhCCHHHHHHHHhhCCCCC
Q 039757 88 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNL---VTWNVMITGLVKWGELEYARSLFEEMPCRN 164 (415)
Q Consensus 88 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (415)
...+..+..-...|+..+...+...+... ++ .++..-...+. ..+...+..+...|++++|.+++++..+..
T Consensus 31 ~~~~s~~e~g~~~~~~~~l~~i~~~l~~~--~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~ 105 (293)
T 3u3w_A 31 QSEVSRIESGAVYPSMDILQGIAAKLQIP--II---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE 105 (293)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHTCC--TH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCcC--HH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Confidence 34455554333467777776666655321 11 22333222222 234445778889999999999999876422
Q ss_pred hhHHHHHHHHHHhccCCCCccCCCch----HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC----HHHHHHHHHHH
Q 039757 165 VVSWTGILDGYTRMNRSNGASTEPSE----ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD----IRVSNCLIDTY 236 (415)
Q Consensus 165 ~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~ 236 (415)
. ..++. ..+..+...+...++++.|...+++..+......+ ..+++.+..+|
T Consensus 106 ~--------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 106 E--------------------YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp C--------------------CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred c--------------------CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 1 11221 12334666677788999999999999874333323 34789999999
Q ss_pred HhcCCHHHHHHHHHHhhhh-------CC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHccC
Q 039757 237 AKCGCIFSALKLFEDISVE-------RK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNR-VTFLSVLNACSHG 307 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~-------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 307 (415)
...|++++|...|+++... .+ ...+|..+...|.+.|++++|...+++..+.....+. .....
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~-------- 237 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ-------- 237 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH--------
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH--------
Confidence 9999999999999998743 11 2346889999999999999999999987653111111 11111
Q ss_pred CcchHHHHHHhHhcCC-HHHHHHHHhcC
Q 039757 308 GLHYGCLVDMLGRAGR-LEQAEKIALGI 334 (415)
Q Consensus 308 ~~~~~~li~~~~~~g~-~~~A~~~~~~~ 334 (415)
.|..+...|.+.|+ +++|.+.+++.
T Consensus 238 --~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 238 --LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp --HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 13346777888884 58887776543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5.2e-07 Score=70.27 Aligned_cols=128 Identities=12% Similarity=0.005 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
....|..+...+...|++++|...|++.. ...+. +..++..+...+...|+++.|...++...+.. +.+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 81 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAI---ELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYI 81 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccH
Confidence 34568888899999999999999999998 55555 78889999999999999999999999998875 4567
Q ss_pred hhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhH--HHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 104 YVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTW--NVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 104 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~--~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
..+..+..++...|++++|...|++..+ | +...+ ..++..+.+.|++++|.+.++...
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7888899999999999999999998764 3 34445 344444778899999999988753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.7e-08 Score=79.11 Aligned_cols=166 Identities=8% Similarity=-0.074 Sum_probs=102.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhH--------HHHHHH
Q 039757 233 IDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTF--------LSVLNA 303 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~--------~~ll~~ 303 (415)
+.+....|+++++.+.|+.-.... .....+..+...+...|++++|...|++.... .|+...+ ...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHH
Confidence 334444555666655555433321 23345666667777777777777777777653 2221100 000000
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHH
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMY 382 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 382 (415)
..+..+...|.+.|++++|+..++......| +...+..+..+|...|++++|...|+++.+..|.+..++..+.
T Consensus 89 -----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 89 -----SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 0133477779999999999999987765534 6678899999999999999999999999999999999999999
Q ss_pred HHHHhcCchhhHH-HHHHHHhhhc
Q 039757 383 NILAGVGRYVDAE-RLRRVMDERN 405 (415)
Q Consensus 383 ~~~~~~g~~~~A~-~~~~~m~~~~ 405 (415)
.++...|+..++. ..+..|-..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 164 LCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999887 5666665544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.1e-07 Score=66.32 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
...+..+...+...|++++|.+.|+++....| +..++..+...+...|++++|...++++... .|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~------------ 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DP------------ 74 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CC------------
Confidence 44555555555555666666655555554422 3444555555555555555555555554432 11
Q ss_pred ccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHH
Q 039757 305 SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI 384 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 384 (415)
.+..++..+...+...|++++|...++++.+..|.+...+..+..+
T Consensus 75 ----------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 75 ----------------------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp ----------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------------------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 1344555666666667777777777777777666666666666655
Q ss_pred HHhc
Q 039757 385 LAGV 388 (415)
Q Consensus 385 ~~~~ 388 (415)
+...
T Consensus 121 ~~~~ 124 (125)
T 1na0_A 121 KQKQ 124 (125)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-07 Score=71.48 Aligned_cols=94 Identities=15% Similarity=-0.051 Sum_probs=84.5
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
.+...+.+.|++++|...|+......| +...|..+..+|...|++++|+..|+++.+.+|.++..+..++.+|...|++
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 366778999999999999998765534 6778999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcc
Q 039757 392 VDAERLRRVMDERNA 406 (415)
Q Consensus 392 ~~A~~~~~~m~~~~~ 406 (415)
++|...+++..+...
T Consensus 106 ~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 106 AEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc
Confidence 999999999887654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.4e-07 Score=66.40 Aligned_cols=118 Identities=8% Similarity=-0.069 Sum_probs=85.3
Q ss_pred CcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCC
Q 039757 21 LLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQ 100 (415)
Q Consensus 21 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 100 (415)
...+...|..+...+...|++++|+..|++.. ...+. +...+..+...+...|++++|...++.+.+.. +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~ 81 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-P 81 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-T
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C
Confidence 44666778888888888888888888888887 55444 66777888888888888888888888887764 3
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhC
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWG 148 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g 148 (415)
.+...+..+..++.+.|++++|.+.|++..+ | +...+..+...+.+.|
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 4566777777778888888888888877653 2 3445556666555544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.8e-07 Score=65.31 Aligned_cols=112 Identities=11% Similarity=0.019 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchh
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVY 104 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 104 (415)
...|..+...+...|++++|.+.|+++. ...+. +..++..+...+...|+++.|...++.+.+.. +.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 78 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL---ELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAE 78 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHH
Confidence 5677778888888888888888888887 44434 66778888888888888888888888887764 34566
Q ss_pred hHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHh
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVK 146 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~ 146 (415)
++..+...+...|++++|...|+++.+ | +...+..+...+..
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 777777888888888888888877653 2 34445444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-07 Score=66.98 Aligned_cols=99 Identities=12% Similarity=-0.049 Sum_probs=86.7
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHh
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAG 387 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 387 (415)
+..+...+...|++++|...+++.....| +...+..+...+...|++++|...++++.+..+. +...+..++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 44577779999999999999987765533 5678889999999999999999999999999998 88999999999999
Q ss_pred c-CchhhHHHHHHHHhhhccccC
Q 039757 388 V-GRYVDAERLRRVMDERNALKF 409 (415)
Q Consensus 388 ~-g~~~~A~~~~~~m~~~~~~~~ 409 (415)
. |++++|.+.+++..+.+....
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HhCCHHHHHHHHHHHhhcccCCC
Confidence 9 999999999999988776543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-07 Score=68.16 Aligned_cols=72 Identities=8% Similarity=-0.156 Sum_probs=43.3
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
|...|++++|.+.+++.....| +...+..+..++...|++++|.+.++++.+..+.+...+..+..++...|
T Consensus 60 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 60 YTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 4444444444444443332212 34556666667777777777777777777777766667777777666555
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=7.5e-07 Score=66.03 Aligned_cols=118 Identities=9% Similarity=-0.070 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
.+...|..+...+...|++++|...|++.. ...+. +...+..+...+...|+++.|.+.++...+.. +.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 79 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAI---ELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHH---HcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccC
Confidence 456678888888888999999999999887 44444 67788888888888899999999988887764 345
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCH
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGEL 150 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 150 (415)
...+..+...+...|++++|...|+...+ | +...+..+..++.+.|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 66777777888888888888888877653 3 455677777777666654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.9e-07 Score=69.94 Aligned_cols=93 Identities=16% Similarity=-0.113 Sum_probs=84.1
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...+.+.|++++|...|+......| +...|..+..++...|++++|+..|+++.+.+|.++..+..++.+|...|+++
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 56678899999999999998766545 67788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc
Q 039757 393 DAERLRRVMDERNA 406 (415)
Q Consensus 393 ~A~~~~~~m~~~~~ 406 (415)
+|...+++..+...
T Consensus 104 ~A~~~~~~al~~~p 117 (142)
T 2xcb_A 104 GAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999887654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.2e-07 Score=71.75 Aligned_cols=157 Identities=8% Similarity=-0.065 Sum_probs=93.1
Q ss_pred cCCChhHHHH---HhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchH
Q 039757 115 SLGFLKDSSK---LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191 (415)
Q Consensus 115 ~~g~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 191 (415)
..|++++|.+ .+..-......++..+...+...|++++|...+++.... +...++ ......
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------~~~~~~-----~~~~~~ 67 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-----------AQKSGD-----HTAEHR 67 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHTTCC-----HHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----------HHHcCC-----cHHHHH
Confidence 3556666666 443322223445666666666666666666666555320 000000 111233
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhc----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCh----
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKR----GFNA-FDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKNL---- 259 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~---- 259 (415)
.+..+...+...|++++|...+.+..+. +..+ .....+..+...+...|++++|.+.+++.... ..+.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4555555666666777766666665543 1011 23456788888999999999999999887654 1222
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
.++..+...+...|++++|...+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3467788889999999999999888765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-07 Score=68.53 Aligned_cols=93 Identities=6% Similarity=-0.198 Sum_probs=82.6
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...+.+.|++++|...|+......| +...|..+..++...|++++|+..++++.+.+|.+...+..++.+|...|+++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 56678899999999999998876645 67789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc
Q 039757 393 DAERLRRVMDERNA 406 (415)
Q Consensus 393 ~A~~~~~~m~~~~~ 406 (415)
+|...+++..+.+.
T Consensus 103 ~A~~~~~~al~~~P 116 (121)
T 1hxi_A 103 AALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999876543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.8e-07 Score=67.11 Aligned_cols=119 Identities=13% Similarity=0.005 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
+...+..+...+...|++++|...|++.....| +...+..+..++...|++++|...+++.... .|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~---------- 78 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPA---------- 78 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--Ccc----------
Confidence 444555555555555555555555555544422 3444455555555555555555555544432 111
Q ss_pred HccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 304 CSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
+...+..+...+...|++++|...++++.+..|.+...+..+..
T Consensus 79 ------------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 122 (131)
T 2vyi_A 79 ------------------------------------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122 (131)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ------------------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 34455566666777777777777777777777666666777777
Q ss_pred HHHhcCch
Q 039757 384 ILAGVGRY 391 (415)
Q Consensus 384 ~~~~~g~~ 391 (415)
++.+.|++
T Consensus 123 ~~~~~~~~ 130 (131)
T 2vyi_A 123 AELKLREA 130 (131)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 77666654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.2e-07 Score=71.92 Aligned_cols=87 Identities=7% Similarity=-0.065 Sum_probs=56.4
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH-HHccCch--
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG-FAMHGMG-- 275 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~-~~~~~~~-- 275 (415)
+...|++++|...++...+. .|.+...+..+..+|...|++++|...|++.....| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 34566777777777777665 455677777777777777777777777777766543 45566666666 6666776
Q ss_pred HHHHHHHHHHHhc
Q 039757 276 KAAVENFERMQKV 288 (415)
Q Consensus 276 ~~A~~~~~~m~~~ 288 (415)
++|...+++....
T Consensus 98 ~~A~~~~~~al~~ 110 (177)
T 2e2e_A 98 AQTRAMIDKALAL 110 (177)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-07 Score=68.06 Aligned_cols=94 Identities=11% Similarity=-0.080 Sum_probs=84.8
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCc
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (415)
..+...+.+.|++++|...|++.....| +...|..+..++...|++++|+..++++++.+|.+...+..++.++...|+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 3466778999999999999988766534 677899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhc
Q 039757 391 YVDAERLRRVMDERN 405 (415)
Q Consensus 391 ~~~A~~~~~~m~~~~ 405 (415)
+++|...+++..+.+
T Consensus 88 ~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 88 YASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-06 Score=62.41 Aligned_cols=97 Identities=10% Similarity=-0.092 Sum_probs=87.4
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+......+...|++++|...|....+. .|.+...+..+..+|.+.|++++|...|++.....| +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345677778889999999999999999987 577899999999999999999999999999988765 57789999999
Q ss_pred HHccCchHHHHHHHHHHHhc
Q 039757 269 FAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~ 288 (415)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999998875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-06 Score=64.73 Aligned_cols=98 Identities=11% Similarity=-0.052 Sum_probs=87.6
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 267 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 267 (415)
+...+..+...+...|++++|...|+..... .|.+...+..+..+|...|++++|...|+++....| +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3455667778889999999999999999987 577999999999999999999999999999988755 6778999999
Q ss_pred HHHccCchHHHHHHHHHHHhc
Q 039757 268 GFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~ 288 (415)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998874
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.7e-07 Score=70.04 Aligned_cols=122 Identities=10% Similarity=0.024 Sum_probs=75.1
Q ss_pred HhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHH-HHhhCCH--HH
Q 039757 79 VTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITG-LVKWGEL--EY 152 (415)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~-~~~~g~~--~~ 152 (415)
...|+++.|...++...+.. +.+...+..+...|...|++++|...|+...+ .+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45567777777777776654 34556666677777777777777777766553 244455555555 5555665 66
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHH
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCL 232 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 232 (415)
|...|++.. +. .|.+...+..+
T Consensus 100 A~~~~~~al--------------------------------------------------------~~--~p~~~~~~~~l 121 (177)
T 2e2e_A 100 TRAMIDKAL--------------------------------------------------------AL--DSNEITALMLL 121 (177)
T ss_dssp HHHHHHHHH--------------------------------------------------------HH--CTTCHHHHHHH
T ss_pred HHHHHHHHH--------------------------------------------------------Hh--CCCcHHHHHHH
Confidence 666665553 22 24466667777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCCh
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERKNL 259 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~~~ 259 (415)
..+|...|++++|...|+++....|+.
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 777777777777777777777664443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-06 Score=63.55 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=87.6
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC--------hhhH
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN--------LVSW 262 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~ 262 (415)
.++..+...+.+.|++++|...|.+.++. .|.+...|..+..+|...|++++|++.|++..+..|+ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45677888999999999999999999987 6878999999999999999999999999998775332 1357
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 263 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
..+..++...|++++|+..|++.... .||.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 77888899999999999999998774 56655443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=8.6e-05 Score=64.63 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=125.5
Q ss_pred hcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCC-ChhHHHHHhcccCC---CchhhHHHHHHHHHhh-C-CHHHH
Q 039757 80 TLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG-FLKDSSKLFDELPE---RNLVTWNVMITGLVKW-G-ELEYA 153 (415)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~a 153 (415)
+.+..++|+++++.++... +-+..+|+..-.++...| .+++++++++.+.. .+..+|+.-...+.+. + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3445567888888888875 345566777777777777 48888888888764 3455677666666665 6 77888
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHH
Q 039757 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233 (415)
Q Consensus 154 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 233 (415)
+++++++.+.++. +..+|+--.
T Consensus 145 L~~~~k~L~~dpk----------------------------------------------------------Ny~AW~~R~ 166 (349)
T 3q7a_A 145 IEYIHGSLLPDPK----------------------------------------------------------NYHTWAYLH 166 (349)
T ss_dssp HHHHHHHTSSCTT----------------------------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHhCCC----------------------------------------------------------CHHHHHHHH
Confidence 8888888765432 222222222
Q ss_pred HHHHhcCCH--------HHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCc-------hHHHHHHHHHHHhcCCCCChhhH
Q 039757 234 DTYAKCGCI--------FSALKLFEDISVERK-NLVSWTSIISGFAMHGM-------GKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 234 ~~~~~~g~~--------~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
-++.+.|.+ .++.+.++++.+..| |...|+.....+.+.++ ++++++.++++... .|+..+-
T Consensus 167 wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~Sa 244 (349)
T 3q7a_A 167 WLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSA 244 (349)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHH
Confidence 222222222 266666666665533 55666666666665554 56777777776664 4544443
Q ss_pred HHHHHHHccCCcchHHHHHHhHhcCC--------------------HHHHHHHHhcCCCC-------CcCHHHHHHHHHH
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGRAGR--------------------LEQAEKIALGIPSE-------ITDVVVRRILLGA 350 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~~-------~p~~~~~~~l~~~ 350 (415)
-..+.. .+.+.|+ .........++... .++...+..|+..
T Consensus 245 W~Ylr~-------------Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 311 (349)
T 3q7a_A 245 WNYLRG-------------FLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADS 311 (349)
T ss_dssp HHHHHH-------------HHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHH
T ss_pred HHHHHH-------------HHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHH
Confidence 222222 1222222 12233333333322 2566677788888
Q ss_pred HhhcCChHHHHHHHHHHHH
Q 039757 351 CSFHGNVEMGERVTRKVLE 369 (415)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~ 369 (415)
|...|+.++|.++++.+.+
T Consensus 312 ~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 312 FIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHh
Confidence 8888888888888888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.7e-07 Score=66.81 Aligned_cols=95 Identities=8% Similarity=-0.144 Sum_probs=81.0
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc-------cHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG-------DYVLMY 382 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~ 382 (415)
+..+...+.+.|++++|+..|++.....| +...|..+..+|...|++++|++.+++.++..|.+.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 45588889999999999999988765545 5778999999999999999999999999998876543 567788
Q ss_pred HHHHhcCchhhHHHHHHHHhhhc
Q 039757 383 NILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.++...|++++|.+.+++.....
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC
Confidence 88899999999999999887644
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3.3e-06 Score=63.98 Aligned_cols=104 Identities=13% Similarity=-0.047 Sum_probs=89.4
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+..+...+.+.|++++|...|+..... .|.+...|..+..+|...|++++|...|++.....| +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 345666777889999999999999999987 577999999999999999999999999999988855 56788999999
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
|...|++++|...|++.... .|+...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~--~p~~~~~ 122 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL--AAAQPAH 122 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--HHTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCcch
Confidence 99999999999999998874 3444333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.3e-07 Score=69.54 Aligned_cols=96 Identities=9% Similarity=-0.087 Sum_probs=85.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCc
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGR 390 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (415)
..+...+.+.|++++|+..|++.....| +...|..+..+|...|++++|+..++++++..|.+...|..++.+|...|+
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Confidence 3467778999999999999998776545 677899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhccc
Q 039757 391 YVDAERLRRVMDERNAL 407 (415)
Q Consensus 391 ~~~A~~~~~~m~~~~~~ 407 (415)
+++|...+++..+....
T Consensus 95 ~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 95 YKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999998876543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-07 Score=73.27 Aligned_cols=169 Identities=12% Similarity=-0.041 Sum_probs=105.8
Q ss_pred HHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CChhHHHHH-HHHHHhccCCC
Q 039757 109 LVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGI-LDGYTRMNRSN 182 (415)
Q Consensus 109 li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~l-i~~~~~~~~~~ 182 (415)
.+......|+++++.+.++.-.+ .....+..+...+.+.|++++|+..|++... |+...+... +....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------ 83 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK------ 83 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH------
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH------
Confidence 34445556777777777765433 2345677888889999999999999988753 110000000 00000
Q ss_pred CccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-Chhh
Q 039757 183 GASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVS 261 (415)
Q Consensus 183 ~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 261 (415)
.......+..+..++...|++++|...++...+. .|.+...+..+..+|...|++++|.+.|++.....| +...
T Consensus 84 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 84 ---KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 0001256777888889999999999999999987 577889999999999999999999999999888755 5667
Q ss_pred HHHHHHHHHccCchHHHH-HHHHHHHhc
Q 039757 262 WTSIISGFAMHGMGKAAV-ENFERMQKV 288 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~-~~~~~m~~~ 288 (415)
+..+..++...++.+++. ..+..|...
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 159 RNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888887777777666 555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.2e-06 Score=75.43 Aligned_cols=160 Identities=9% Similarity=-0.072 Sum_probs=119.2
Q ss_pred CChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccCCCCccCCCchH
Q 039757 117 GFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNRSNGASTEPSEI 191 (415)
Q Consensus 117 g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 191 (415)
+++++|...++...+ | +...|..+...+.+.|++++|+..|++..+ |+..... .............
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---------~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------NEEAQKAQALRLA 197 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------SHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC---------hHHHHHHHHHHHH
Confidence 445555555555443 2 456788999999999999999999998763 2210000 0000000001146
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFA 270 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~ 270 (415)
.+..+..++.+.|++++|...++..++. .|.+...+..+..+|...|++++|...|+++....| +...+..+..++.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 7788888999999999999999999998 577899999999999999999999999999988855 5678999999999
Q ss_pred ccCchHHH-HHHHHHHHh
Q 039757 271 MHGMGKAA-VENFERMQK 287 (415)
Q Consensus 271 ~~~~~~~A-~~~~~~m~~ 287 (415)
..|+.++| ...|+.|..
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999988 456676653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-06 Score=77.74 Aligned_cols=194 Identities=8% Similarity=-0.157 Sum_probs=140.1
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFD---------------IRVSNCLIDTYAKCGCIFSALKLFEDISVER---KN 258 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~ 258 (415)
...+...|++++|.+.|..+.+......+ ...+..++..|...|++++|.+.+..+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999999876322211 1246789999999999999999999887651 11
Q ss_pred h----hhHHHHHHHHHccCchHHHHHHHHHHHhc----CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH
Q 039757 259 L----VSWTSIISGFAMHGMGKAAVENFERMQKV----GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 259 ~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (415)
. .+.+.+-..+...|++++|..++++.... +..+.... .+..+...|...|++++|..+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------------~~~~la~~~~~~g~~~~A~~~ 157 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS-------------LSIKLATLHYQKKQYKDSLAL 157 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH-------------HHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH-------------HHHHHHHHHHHccChHHHHHH
Confidence 1 22344444555678999999999887542 23333221 133478889999999999998
Q ss_pred HhcCCCC------Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--C-----CccHHHHHHHHHhcCchhhHHH
Q 039757 331 ALGIPSE------IT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--N-----GGDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 331 ~~~~~~~------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-----~~~~~~l~~~~~~~g~~~~A~~ 396 (415)
+++.... .| ...++..+++.|...|++++|..++++.....+. + ...+..++..+...|++++|..
T Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 158 INDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8754321 22 3458888999999999999999999998875532 2 2456677778888999999998
Q ss_pred HHHHHhh
Q 039757 397 LRRVMDE 403 (415)
Q Consensus 397 ~~~~m~~ 403 (415)
.+.+..+
T Consensus 238 ~~~~a~~ 244 (434)
T 4b4t_Q 238 YFFESFE 244 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.4e-05 Score=67.72 Aligned_cols=199 Identities=11% Similarity=-0.103 Sum_probs=141.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCc----------------hhhHHHHHHHHHcCCChhHHHHHhcccCC-----
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSH----------------VYVNTALVNMYVSLGFLKDSSKLFDELPE----- 131 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~----- 131 (415)
.-.+.+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+..+.+
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 345667889999999999999987542211 12366788999999999999999988764
Q ss_pred Cch----hhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChh
Q 039757 132 RNL----VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVR 207 (415)
Q Consensus 132 ~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~ 207 (415)
++. .+.+.+-..+...|++++|.++++..... ..+.++ ......++..+...+...|+++
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~-----~~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF-----------AKREKR-----VFLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH-----------HHHSSC-----CSSHHHHHHHHHHHHHHHTCHH
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------HHHhCc-----cHHHHHHHHHHHHHHHHccChH
Confidence 111 23344444455678899998888776420 000000 1223456777888889999999
Q ss_pred HHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCC-----hhhHHHHHHHHHccCch
Q 039757 208 NCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKN-----LVSWTSIISGFAMHGMG 275 (415)
Q Consensus 208 ~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~~li~~~~~~~~~ 275 (415)
+|..+++.+... +-.+....++..++..|...|++++|..++++.... -++ ...+..+...+...|++
T Consensus 153 ~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y 232 (434)
T 4b4t_Q 153 DSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDY 232 (434)
T ss_dssp HHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhH
Confidence 999998887653 112334678889999999999999999999987654 122 24467777788889999
Q ss_pred HHHHHHHHHHHh
Q 039757 276 KAAVENFERMQK 287 (415)
Q Consensus 276 ~~A~~~~~~m~~ 287 (415)
++|...|.+...
T Consensus 233 ~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 233 KTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=65.96 Aligned_cols=95 Identities=9% Similarity=-0.143 Sum_probs=84.9
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
.+...+...|++++|...|+......| +...|..+..++...|++++|...++++.+..|.+...+..++.+|...|++
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY 93 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhH
Confidence 467778999999999999987765534 5678999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhccc
Q 039757 392 VDAERLRRVMDERNAL 407 (415)
Q Consensus 392 ~~A~~~~~~m~~~~~~ 407 (415)
++|...+++..+....
T Consensus 94 ~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 94 DEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChh
Confidence 9999999998876544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.7e-07 Score=65.51 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=80.2
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCcCH----HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC---CccHHHHHHHHH
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEITDV----VVRRILLGACSFHGNVEMGERVTRKVLEMERGN---GGDYVLMYNILA 386 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 386 (415)
+...+...|++++|...|+.+....|+. ..+..+..++...|++++|...++++.+..|.+ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 5667889999999999999876653433 477888899999999999999999999999887 667899999999
Q ss_pred hcCchhhHHHHHHHHhhhc
Q 039757 387 GVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 387 ~~g~~~~A~~~~~~m~~~~ 405 (415)
..|++++|...++++.+..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 9999999999999998765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.7e-06 Score=59.70 Aligned_cols=98 Identities=7% Similarity=-0.081 Sum_probs=86.7
Q ss_pred chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---ChhhHHHH
Q 039757 189 SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK---NLVSWTSI 265 (415)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l 265 (415)
+...+..+...+...|++++|...++...+. .|.+...+..+..++...|++++|.+.|++.....| +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3455677778889999999999999999987 466888999999999999999999999999988755 47789999
Q ss_pred HHHHHcc-CchHHHHHHHHHHHhc
Q 039757 266 ISGFAMH-GMGKAAVENFERMQKV 288 (415)
Q Consensus 266 i~~~~~~-~~~~~A~~~~~~m~~~ 288 (415)
..++... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 9999999 9999999999999876
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-06 Score=65.51 Aligned_cols=95 Identities=14% Similarity=-0.029 Sum_probs=84.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCcC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEITD----VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG 387 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (415)
..+...+...|++++|.+.|++.....|+ ...+..+...+...|++++|+..+++..+..+.+...+..++.+|..
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 111 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK 111 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH
Confidence 34677789999999999999988776566 57888899999999999999999999999999898999999999999
Q ss_pred cCchhhHHHHHHHHhhhcc
Q 039757 388 VGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 388 ~g~~~~A~~~~~~m~~~~~ 406 (415)
.|++++|...+++..+.+.
T Consensus 112 ~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 112 LGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HTCHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 9999999999999887653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-05 Score=62.97 Aligned_cols=105 Identities=12% Similarity=-0.045 Sum_probs=92.4
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHH
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSII 266 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 266 (415)
.+...+..+...+...|++++|...|+...+. .|.+...+..+..+|...|++++|...|++.....| +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567788888999999999999999999998 577899999999999999999999999999988865 577899999
Q ss_pred HHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
.+|...|++++|...|++..+. .|+...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 114 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA--EGNGGS 114 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HSSSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CCCchH
Confidence 9999999999999999999875 455444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=6.9e-06 Score=59.38 Aligned_cols=99 Identities=6% Similarity=-0.084 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
++...|..+...+...|++++|...|++.. ...+. +...+..+...+...|+++.|...++...+.. +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 71 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAI---KLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDW 71 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHH---HHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-ccc
Confidence 345677888888888899999999998887 55444 67778888888888888888988888887764 345
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCC
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPE 131 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 131 (415)
...+..+..++...|++++|...|+...+
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66777778888888888888888877654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-05 Score=56.72 Aligned_cols=103 Identities=11% Similarity=-0.056 Sum_probs=89.3
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
...+..+...+...|+++.|...++..... .|.+...+..+..++...|++++|...+++.....| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 456677788889999999999999999987 566889999999999999999999999999988755 57789999999
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
+...|++++|...+++..+. .|+...
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~--~~~~~~ 107 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH--EANNPQ 107 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred HHHHhhHHHHHHHHHHHHHc--CCCCHH
Confidence 99999999999999998875 455443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-05 Score=60.11 Aligned_cols=100 Identities=12% Similarity=-0.049 Sum_probs=89.6
Q ss_pred CCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHH
Q 039757 187 EPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 265 (415)
Q Consensus 187 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 265 (415)
..+...+..+...+...|+++.|...|....+. .|.+...+..+..++...|++++|...|++.....| +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 345677888888999999999999999999987 576899999999999999999999999999988755 57789999
Q ss_pred HHHHHccCchHHHHHHHHHHHhc
Q 039757 266 ISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 266 i~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
..+|...|++++|...|++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.2e-06 Score=60.91 Aligned_cols=95 Identities=7% Similarity=-0.075 Sum_probs=84.7
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFA 270 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~ 270 (415)
.+..+...+.+.|++++|...++...+. .|.+...+..+..++...|++++|+..|++.....| +...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455667788999999999999999998 677999999999999999999999999999988866 5778999999999
Q ss_pred ccCchHHHHHHHHHHHhc
Q 039757 271 MHGMGKAAVENFERMQKV 288 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m~~~ 288 (415)
..|++++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998874
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.7e-06 Score=65.57 Aligned_cols=91 Identities=14% Similarity=0.020 Sum_probs=63.8
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCC---Cc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC------CCccHHH
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSE---IT----DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG------NGGDYVL 380 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 380 (415)
+...+...|++++|.+.+++.... .+ ....+..+...+...|++++|.+.+++..+.... ....+..
T Consensus 55 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 444455555555555555443322 01 2446777888888999999999999998876432 2356778
Q ss_pred HHHHHHhcCchhhHHHHHHHHhhh
Q 039757 381 MYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 381 l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
+...+...|++++|.+.+++..+.
T Consensus 135 la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 899999999999999999887654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.8e-06 Score=78.19 Aligned_cols=158 Identities=11% Similarity=-0.064 Sum_probs=88.0
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHH
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 282 (415)
.+++++|...++..... .|.....+..+...|.+.|++++|...|++.....|+...+ . .+.... .
T Consensus 247 l~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~----------~-~~~~~~-~ 312 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL----------S-EKESKA-S 312 (457)
T ss_dssp EEEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC----------C-HHHHHH-H
T ss_pred hhhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC----------C-hHHHHH-H
Confidence 34455555555544443 23356677777888888888888888888877653432100 0 000000 0
Q ss_pred HHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHH
Q 039757 283 ERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGE 361 (415)
Q Consensus 283 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 361 (415)
..+. .. .|..+...|.+.|++++|+..+++.....| +...|..+..+|...|++++|+
T Consensus 313 ~~~~-------~~--------------~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~ 371 (457)
T 1kt0_A 313 ESFL-------LA--------------AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK 371 (457)
T ss_dssp HHHH-------HH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHH-------HH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHH
Confidence 0000 00 122244455666666666666655444322 4556666677777777777777
Q ss_pred HHHHHHHHcccCCCccHHHHHHHHHhcCchhhHH
Q 039757 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
..|+++++..|.+..++..+..++.+.|++++|.
T Consensus 372 ~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 372 GDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777776665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.2e-07 Score=65.49 Aligned_cols=86 Identities=15% Similarity=-0.029 Sum_probs=72.4
Q ss_pred hcCCHHHHHHHHhcCCCC---Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHH
Q 039757 320 RAGRLEQAEKIALGIPSE---IT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
..|++++|+..|++.... .| +...+..+..+|...|++++|+..++++++..|.++.++..++.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 368889999999887665 24 45588889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 039757 396 RLRRVMDERN 405 (415)
Q Consensus 396 ~~~~~m~~~~ 405 (415)
..+++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999987764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-05 Score=58.73 Aligned_cols=105 Identities=8% Similarity=0.008 Sum_probs=88.8
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-C-------hhh
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-N-------LVS 261 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-------~~~ 261 (415)
...+..+...+...|+++.|...+....+. .|.+...+..+..+|...|++++|...++++....| + ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 345677788889999999999999999987 466889999999999999999999999999877633 2 667
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 262 WTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 262 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
+..+..++...|++++|...|++..+. .|+.....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 116 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLK 116 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHH
Confidence 888999999999999999999999885 45544433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.1e-06 Score=62.24 Aligned_cols=63 Identities=11% Similarity=-0.058 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC----hhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
+...+..+...+...|++++|.+.|++.....|+ ...+..+..+|...|++++|...+++..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 4555555555555666666666666555554443 33444455555555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=64.13 Aligned_cols=96 Identities=14% Similarity=0.006 Sum_probs=82.6
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC-------CccHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN-------GGDYVLMY 382 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~ 382 (415)
+..+...+...|++++|...|++.....| +...+..+...+...|++++|...++++.+..+.+ ..++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 34477778999999999999987765533 66788889999999999999999999999988765 67888999
Q ss_pred HHHHhcCchhhHHHHHHHHhhhcc
Q 039757 383 NILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.++...|++++|.+.+++..+...
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999887643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.2e-06 Score=63.94 Aligned_cols=137 Identities=16% Similarity=0.075 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CC----hhhHHHHHHHHHccCchHHHHHHHHHHHhcCC-CCChhhH
Q 039757 226 IRVSNCLIDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSIISGFAMHGMGKAAVENFERMQKVGL-KPNRVTF 297 (415)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~ 297 (415)
..++..+...|...|++++|.+.+++..... ++ ..++..+...+...|++++|...+++.....- .++....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4567778888888889999888888876651 22 13677788888889999999998888765311 1121111
Q ss_pred HHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC---Cc----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 039757 298 LSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE---IT----DVVVRRILLGACSFHGNVEMGERVTRKVLEM 370 (415)
Q Consensus 298 ~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 370 (415)
.. .+..+...+...|++++|.+.+++.... .. ...++..+...+...|++++|.+.+++..+.
T Consensus 89 ~~----------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQ----------SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HH----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11 1334777788899999998888765432 11 2346778888899999999999999998775
Q ss_pred cc
Q 039757 371 ER 372 (415)
Q Consensus 371 ~~ 372 (415)
..
T Consensus 159 ~~ 160 (164)
T 3ro3_A 159 SR 160 (164)
T ss_dssp HT
T ss_pred HH
Confidence 43
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=7.5e-06 Score=75.72 Aligned_cols=124 Identities=14% Similarity=0.021 Sum_probs=97.2
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHcc
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMH 272 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~ 272 (415)
..+...+.+.|++++|...+++..+. .|.+..++..+..+|.+.|++++|.+.+++..+..| +...|..+..+|...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455677899999999999999997 577899999999999999999999999999988755 567899999999999
Q ss_pred CchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHh
Q 039757 273 GMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIAL 332 (415)
Q Consensus 273 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (415)
|++++|...|++..+. .|+.......+. .+..+.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~--~p~~~~~~~~l~-----------~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKV--KPHDKDAKMKYQ-----------ECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHH--STTCTTHHHHHH-----------HHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHH-----------HHHHHHHHHHHHHHhcccc
Confidence 9999999999999885 455443222111 2233777899999999988
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00022 Score=61.72 Aligned_cols=247 Identities=10% Similarity=0.009 Sum_probs=165.1
Q ss_pred HHHHHHHHHHh---hcCCChH-HHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC----------CchHHHH
Q 039757 25 TLLFNTLLHFY---SLADSPK-KAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY----------PNLGTQL 90 (415)
Q Consensus 25 ~~~~~~li~~~---~~~g~~~-~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~----------~~~a~~~ 90 (415)
+..|..+.... .+.|++. +|+.+++.+. ...+. +..+|+.--..+...+. ++.++.+
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L---~~nP~------~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~ 96 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQIL---GANPD------FATLWNCRREVLQHLETEKSPEESAALVKAELGF 96 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH---TTCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HHCch------hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHH
Confidence 44555555433 3466654 8999999999 66655 66667665554444433 5788899
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHcCCC--hhHHHHHhcccCC---CchhhHHHHHHHHHhhCC-HHHHHHHHhhCCC--
Q 039757 91 HAVISKVGFQSHVYVNTALVNMYVSLGF--LKDSSKLFDELPE---RNLVTWNVMITGLVKWGE-LEYARSLFEEMPC-- 162 (415)
Q Consensus 91 ~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~-- 162 (415)
++.+.... +-+..+|+.-..++.+.|+ +++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.++++.+
T Consensus 97 ~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 97 LESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 99988875 4578888888888888884 8999999999885 567788887777788888 5899999998874
Q ss_pred -CChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc--
Q 039757 163 -RNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC-- 239 (415)
Q Consensus 163 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 239 (415)
.|...|+.....+.+.+....+ ++ ..-...+.++++...+...... .|.|...|+-+-..+.+.
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~---~~--------~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDS---GP--------QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC-----------------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHHHHHHhhhcccc---cc--------ccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccC
Confidence 3445555555444443221110 00 0000114567788888888877 577888887665555554
Q ss_pred ---------CCHHHHHHHHHHhhhhCCChhhHHHHHH-----HHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 240 ---------GCIFSALKLFEDISVERKNLVSWTSIIS-----GFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 240 ---------g~~~~A~~~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
+.++++++.++++.+..|+. .|+.+.. .....+..+++...+.++++. .|...-+
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~ 311 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAY 311 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--CcchhhH
Confidence 45789999999998887764 3433222 222457778889999999874 5655443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.6e-05 Score=56.21 Aligned_cols=100 Identities=11% Similarity=-0.002 Sum_probs=83.3
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC----hhhHHHHH
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI---RVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSII 266 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li 266 (415)
..+...+...|++++|...++.+.+. .|.+. ..+..+..++...|++++|...|+++....|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 34556778899999999999999987 34455 68888999999999999999999999887554 56688899
Q ss_pred HHHHccCchHHHHHHHHHHHhcCCCCChhhH
Q 039757 267 SGFAMHGMGKAAVENFERMQKVGLKPNRVTF 297 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 297 (415)
.++...|++++|...|+++... .|+....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 112 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ--YPGSDAA 112 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCChHH
Confidence 9999999999999999999885 4665543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00036 Score=60.41 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=43.8
Q ss_pred HhcCCCc-hHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCC----------hhHHHHHhcccCC---CchhhHHHHHHHH
Q 039757 79 VTLSYPN-LGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF----------LKDSSKLFDELPE---RNLVTWNVMITGL 144 (415)
Q Consensus 79 ~~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~---~~~~~~~~li~~~ 144 (415)
.+.|.++ +|+++++.+.... +-+..+|+.--..+...+. +++++.+++.+.. .+..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455554 6777777777654 2233445544333332222 4555555555543 2444555555555
Q ss_pred HhhC--CHHHHHHHHhhCCC
Q 039757 145 VKWG--ELEYARSLFEEMPC 162 (415)
Q Consensus 145 ~~~g--~~~~a~~~~~~m~~ 162 (415)
.+.| ++++++++++++.+
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~ 138 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLE 138 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHH
Confidence 5555 35666666666654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.3e-06 Score=78.12 Aligned_cols=123 Identities=9% Similarity=-0.034 Sum_probs=96.8
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CH
Q 039757 263 TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DV 341 (415)
Q Consensus 263 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~ 341 (415)
..+...+.+.|++++|...|++..+. .|+.... +..+...|.+.|++++|++.+++.....| +.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~-------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIY-------------YGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHH-------------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 33445567789999999999998875 5554321 33477779999999999999988766644 56
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHH--HHhcCchhhHHHHHHH
Q 039757 342 VVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNI--LAGVGRYVDAERLRRV 400 (415)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 400 (415)
..+..+..+|...|++++|++.++++.+..|.+...+..+..+ +.+.|++++|.+.+++
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7899999999999999999999999999999988888888887 8899999999999883
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.8e-06 Score=64.67 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=81.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCC------------------Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSE------------------IT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~------------------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
......+.+.|++++|+..|+..... .| +...|..+..+|.+.|++++|+..++++++.+|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 34677789999999999998766543 12 235788889999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 373 GNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 373 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.+..+|..++.+|...|++++|...+++..+.+.
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999887654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.9e-06 Score=63.26 Aligned_cols=93 Identities=15% Similarity=-0.002 Sum_probs=80.6
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCcC--------H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHc-------ccC
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEITD--------V-----VVRRILLGACSFHGNVEMGERVTRKVLEM-------ERG 373 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~--------~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~ 373 (415)
....+.+.|++++|+..|+......|+ . ..|..+..++.+.|++++|+..+++.++. +|.
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 566688899999999999876654333 2 28899999999999999999999999999 888
Q ss_pred CCccH----HHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 374 NGGDY----VLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 374 ~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
+...| ...+.++...|++++|+..|++..+...
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88899 9999999999999999999999876543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00025 Score=66.86 Aligned_cols=173 Identities=6% Similarity=-0.080 Sum_probs=136.9
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhhCC-ChhhHHHHHHHHHcc
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC----------IFSALKLFEDISVERK-NLVSWTSIISGFAMH 272 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~ 272 (415)
...++|...++.+... .|.+..+|+.--.++...|+ ++++.+.++++....| +..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3446789999999987 57788888887777777777 9999999999988855 677899888888899
Q ss_pred C--chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcC-CHHHHHHHHhcCCCCCc-CHHHHHHHH
Q 039757 273 G--MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAG-RLEQAEKIALGIPSEIT-DVVVRRILL 348 (415)
Q Consensus 273 ~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p-~~~~~~~l~ 348 (415)
+ +++++++.++++.+...+ +...| +.-...+.+.| .++++++.++++.+..| +...|+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW--------------~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~ 185 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCW--------------DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 185 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHH--------------HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHH--------------HHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHH
Confidence 9 679999999999986322 22222 22344456667 88999999999888745 666787776
Q ss_pred HHHhhc--------------CChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh
Q 039757 349 GACSFH--------------GNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393 (415)
Q Consensus 349 ~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 393 (415)
..+... +.++++++.+++++..+|.+..+|..+...+.+.|+.++
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 666552 567999999999999999999999999999988888555
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.9e-05 Score=70.42 Aligned_cols=87 Identities=7% Similarity=-0.117 Sum_probs=76.1
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
|..+...|.+.|++++|++.+++.....| +...|..+..+|...|++++|++.|+++.+..|.+...+..+..++...+
T Consensus 276 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 276 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 44477779999999999999988877645 56789999999999999999999999999999999999999999999999
Q ss_pred chhhHHHH
Q 039757 390 RYVDAERL 397 (415)
Q Consensus 390 ~~~~A~~~ 397 (415)
+.+++.+.
T Consensus 356 ~~~~a~k~ 363 (370)
T 1ihg_A 356 AQKDKEKA 363 (370)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 88887654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.6e-06 Score=73.46 Aligned_cols=155 Identities=9% Similarity=-0.077 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNAC 304 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 304 (415)
....+..+...+.+.|++++|...|++.....|+... +...++.+++...+.. ..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~~----------~~-------- 232 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVKN----------PC-------- 232 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHHT----------HH--------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHHH----------HH--------
Confidence 4555666777777778888888888777665443221 2233344443322210 11
Q ss_pred ccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 305 SHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
|..+...|.+.|++++|+..++......| +...|..+..+|...|++++|...|+++.+..|.+..++..+..
T Consensus 233 ------~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 233 ------HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306 (338)
T ss_dssp ------HHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 33477779999999999999987765544 67789999999999999999999999999999988888888887
Q ss_pred HH-HhcCchhhHHHHHHHHhhhccccCC
Q 039757 384 IL-AGVGRYVDAERLRRVMDERNALKFP 410 (415)
Q Consensus 384 ~~-~~~g~~~~A~~~~~~m~~~~~~~~~ 410 (415)
.. ...+..+++..++++|........|
T Consensus 307 l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 74 4567788889999988776654433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-05 Score=57.59 Aligned_cols=93 Identities=11% Similarity=-0.092 Sum_probs=74.8
Q ss_pred hcCChhHHHHHHhhhhhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHH
Q 039757 202 QNGAVRNCQLIHGYGEKRGF-NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAV 279 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~ 279 (415)
..|++++|...|++..+.+. .|.+..++..+..+|...|++++|.+.|++.....| +...+..+..++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46888999999999998632 255678899999999999999999999999988865 5778999999999999999999
Q ss_pred HHHHHHHhcCCCCChhh
Q 039757 280 ENFERMQKVGLKPNRVT 296 (415)
Q Consensus 280 ~~~~~m~~~g~~p~~~~ 296 (415)
..|++.... .|+...
T Consensus 82 ~~~~~al~~--~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAE--TSDDET 96 (117)
T ss_dssp HHHHHHHHH--HCCCHH
T ss_pred HHHHHHHHh--CCCcHH
Confidence 999998875 344433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=8.8e-05 Score=57.35 Aligned_cols=108 Identities=8% Similarity=-0.002 Sum_probs=89.2
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhc--------C--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKR--------G--------FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDIS 253 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 253 (415)
...+......+.+.|+++.|...|...+.. . ..|.+..+|..+..+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667778888999999999999988875 0 023356789999999999999999999999998
Q ss_pred hhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh-hHHH
Q 039757 254 VERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV-TFLS 299 (415)
Q Consensus 254 ~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ 299 (415)
...| +...|..+..+|...|++++|...|++.... .|+.. ....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~ 136 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAR 136 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 8755 6778999999999999999999999999885 67765 4333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.02 E-value=3.3e-05 Score=71.06 Aligned_cols=127 Identities=9% Similarity=-0.016 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCC---------------chhHHHHHHHHHhcCCCchHHH
Q 039757 25 TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFD---------------SFTYSFLIRTCVTLSYPNLGTQ 89 (415)
Q Consensus 25 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~---------------~~~~~~l~~~~~~~~~~~~a~~ 89 (415)
...|..+...|.+.|++++|+..|++.. ...+. + ...|..+..++.+.|+++.|+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al---~~~p~------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIV---SWLEM------EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHTT------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH---HHhcc------cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4578888999999999999999999998 43333 3 5788999999999999999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC--C-chhhHHHHHHHHHhhCCHHHHH-HHHhhCC
Q 039757 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE--R-NLVTWNVMITGLVKWGELEYAR-SLFEEMP 161 (415)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~-~~~~~m~ 161 (415)
.++.+++.. +.+...|..+..+|...|++++|+..|+...+ | +...+..+..++.+.++.+++. ..+..|.
T Consensus 339 ~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 339 CCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998875 45678888899999999999999999998875 3 4567888888999999888776 4556554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.8e-05 Score=72.81 Aligned_cols=131 Identities=11% Similarity=0.029 Sum_probs=99.8
Q ss_pred HHHHccCchHHHHHHHHHHHhc---CCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC------
Q 039757 267 SGFAMHGMGKAAVENFERMQKV---GLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE------ 337 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------ 337 (415)
..+...|++++|+.++++..+. -+.|+...... +++.|...|...|++++|..++++....
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~----------~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLR----------LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH----------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 3466789999999999887653 23344433333 2556899999999999999988764322
Q ss_pred --CcCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHc-----ccCCC---ccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 338 --ITDV-VVRRILLGACSFHGNVEMGERVTRKVLEM-----ERGNG---GDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 338 --~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
.|+. .+++.|...|...|++++|+.+++++++. |+.++ .+...+..++...|++++|..++.++.+.-.
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544 47899999999999999999999999763 34433 4556788888999999999999999987554
Q ss_pred c
Q 039757 407 L 407 (415)
Q Consensus 407 ~ 407 (415)
+
T Consensus 467 ~ 467 (490)
T 3n71_A 467 N 467 (490)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=57.34 Aligned_cols=97 Identities=16% Similarity=0.018 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
++...|..+...+...|++++|+..|++.. ...+. +...+..+..++...|++++|.+.++...+.. |+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~ 70 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLI---TAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--ST 70 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC
Confidence 456678888888888899999999888888 55544 67788888888888888888888888887653 33
Q ss_pred -------hhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 103 -------VYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 103 -------~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
...+..+..++...|+.+.|...|+.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4445556666666677777666666554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.9e-05 Score=70.67 Aligned_cols=130 Identities=12% Similarity=-0.068 Sum_probs=98.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhh-----CCC----hhhHHHHHHHHHccCchHHHHHHHHHHHhc---CCCCChhhHHHHH
Q 039757 234 DTYAKCGCIFSALKLFEDISVE-----RKN----LVSWTSIISGFAMHGMGKAAVENFERMQKV---GLKPNRVTFLSVL 301 (415)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll 301 (415)
..+...|++++|+.++++.... +++ ..+++.|...|...|++++|+.++++.... -+.|+......
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~-- 394 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM-- 394 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH--
Confidence 3466789999999999987665 332 356999999999999999999999987642 23344433333
Q ss_pred HHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--------CcCHH-HHHHHHHHHhhcCChHHHHHHHHHHHHccc
Q 039757 302 NACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--------ITDVV-VRRILLGACSFHGNVEMGERVTRKVLEMER 372 (415)
Q Consensus 302 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 372 (415)
+++.|...|...|++++|+.++++.... .|+.. +...+..++...+.+++|+.++.++.+...
T Consensus 395 --------~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 395 --------AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666999999999999999988765432 45433 566777788889999999999999987553
Q ss_pred C
Q 039757 373 G 373 (415)
Q Consensus 373 ~ 373 (415)
.
T Consensus 467 ~ 467 (490)
T 3n71_A 467 N 467 (490)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.3e-05 Score=69.02 Aligned_cols=151 Identities=7% Similarity=-0.075 Sum_probs=71.6
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 269 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 269 (415)
...+..+...+.+.|+++.|...|....+. .| +... +...|+.+++...+. ...|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p-~~~~-------~~~~~~~~~~~~~l~--------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MG-DDFM-------FQLYGKYQDMALAVK--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SC-HHHH-------HTCCHHHHHHHHHHH--------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hc-cchh-------hhhcccHHHHHHHHH--------HHHHHHHHHHH
Confidence 345667777888999999999999998886 34 2221 122233333332221 12566677777
Q ss_pred HccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcC-HHHHHHHH
Q 039757 270 AMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITD-VVVRRILL 348 (415)
Q Consensus 270 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~ 348 (415)
.+.|++++|+..+++..+. .|+.... |..+..+|...|++++|...|++.....|+ ...+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a-------------~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKA-------------LFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHH-------------HHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 7777777777777777664 3432211 222556677777777777777777665443 33444444
Q ss_pred HH-HhhcCChHHHHHHHHHHHHcccC
Q 039757 349 GA-CSFHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 349 ~~-~~~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.. ....+..+.+...|..+....|.
T Consensus 306 ~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 306 ALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 33 23345566777777777766654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0001 Score=65.57 Aligned_cols=123 Identities=8% Similarity=-0.011 Sum_probs=97.4
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhc--------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKR--------------GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 257 (415)
.+..+...+.+.|++++|...|++.++. ...|.+..+|..+..+|.+.|++++|.+.++++.+..|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4667777889999999999999998871 02455778999999999999999999999999998755
Q ss_pred -ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHH
Q 039757 258 -NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEK 329 (415)
Q Consensus 258 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (415)
+...|..+..+|...|++++|...|++..+. .|+....... +...+...++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~-------------l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAE-------------LLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH-------------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHH-------------HHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999885 5655443332 3444556666666544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.92 E-value=4.9e-05 Score=53.42 Aligned_cols=65 Identities=18% Similarity=0.098 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
+...+..+...|...|++++|+..|+++++.+|.+...|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678888888999999999999999999999888889999999999999999999999887754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.9e-05 Score=57.15 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 326 QAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 326 ~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
+|+..|++.....| +...+..+...+...|++++|+..++++.+..|.+...+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555444434 56788888888999999999999999999998888888999999999999999999999887764
Q ss_pred c
Q 039757 405 N 405 (415)
Q Consensus 405 ~ 405 (415)
.
T Consensus 83 ~ 83 (115)
T 2kat_A 83 A 83 (115)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.8e-06 Score=61.02 Aligned_cols=90 Identities=10% Similarity=-0.128 Sum_probs=74.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC------CccHHHHHHH
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN------GGDYVLMYNI 384 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~ 384 (415)
..+...+...|++++|.+.|++.....| +...+..+..++...|++++|++.++++++..|.+ ...+..+..+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 87 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELA 87 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 3467778999999999999987765534 67788899999999999999999999999999887 6677788888
Q ss_pred HHhcCchhhHHHHHHHH
Q 039757 385 LAGVGRYVDAERLRRVM 401 (415)
Q Consensus 385 ~~~~g~~~~A~~~~~~m 401 (415)
+...|++++|.+.++++
T Consensus 88 ~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 88 QGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHCCCCCSSSSSSC
T ss_pred HHHHHhHhhhHhHHHHh
Confidence 88888888877665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00057 Score=64.45 Aligned_cols=117 Identities=10% Similarity=0.003 Sum_probs=95.0
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC----------CchHHHHHHHHHHcCCCCchhhHH
Q 039757 38 ADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY----------PNLGTQLHAVISKVGFQSHVYVNT 107 (415)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~ 107 (415)
....++|++.++.+. ...+. +..+|+.--..+...|+ ++++.+.++.+.+.. +-+..+|+
T Consensus 42 ~~~~eeal~~~~~~l---~~nP~------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~ 111 (567)
T 1dce_A 42 GELDESVLELTSQIL---GANPD------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (567)
T ss_dssp TCCSHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCCHHHHHHHHHHH---HHCch------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344578899999999 77766 77788877777777776 889999999998876 45778888
Q ss_pred HHHHHHHcCC--ChhHHHHHhcccCC---CchhhHHHHHHHHHhhC-CHHHHHHHHhhCCCCC
Q 039757 108 ALVNMYVSLG--FLKDSSKLFDELPE---RNLVTWNVMITGLVKWG-ELEYARSLFEEMPCRN 164 (415)
Q Consensus 108 ~li~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~ 164 (415)
.-..++.+.| +++++++.++.+.+ .|..+|+...-.+.+.| .++++++.++++.+.+
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 8888888889 66999999999875 46778888888888888 8899999999888644
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00021 Score=54.28 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=80.7
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhh----
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAF-------DI-----RVSNCLIDTYAKCGCIFSALKLFEDISVE---- 255 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 255 (415)
.+......+...|++++|...|++.++. .|. +. ..|+.+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4556667788899999999999999987 343 22 38999999999999999999999999887
Q ss_pred ---CCC-hhhH----HHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 256 ---RKN-LVSW----TSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 256 ---~~~-~~~~----~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
.|+ ...| .....++...|++++|+..|++..+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 775 4568 89999999999999999999998763
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.76 E-value=5.7e-05 Score=51.67 Aligned_cols=76 Identities=16% Similarity=0.049 Sum_probs=52.4
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
+...+...|++++|...+++.....| +...+..+...+...|++++|...+++..+..|.+...+..+..++.+.|
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 55557777777777777766544323 45567777777777777777777777777777777777777766665543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.74 E-value=3.6e-06 Score=74.70 Aligned_cols=312 Identities=10% Similarity=0.040 Sum_probs=206.5
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
-.+.+|+.|..+....+.+.+|++.|-+.. |+..|..++.++.+.|.++.-..++.-.++..- +
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e 115 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--E 115 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS--------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--S
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCC--------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--c
Confidence 345679999999999999999988765443 778899999999999999999999887766543 3
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC---------------------
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--------------------- 161 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------------------- 161 (415)
+.+=+.|+-+|++.+++.+-++++. .||..-...+..-|...|.++.|.-+|..+.
T Consensus 116 ~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 116 SYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp TTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred cccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 4455679999999999877544333 2666666777778888888888888877764
Q ss_pred ---CCChhHHHHHHHHHHhccCCCCcc-----CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHH
Q 039757 162 ---CRNVVSWTGILDGYTRMNRSNGAS-----TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLI 233 (415)
Q Consensus 162 ---~~~~~~~~~li~~~~~~~~~~~a~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 233 (415)
..++.||-.+-.+|...+.+.-|. ..........++.-|...|-+++-..+++.... .......+|+-|.
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELa 270 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELA 270 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHH
Confidence 146788999999999999888887 222233345677788888999998888888774 3555788899888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhh---C------CChhhHHHHHHHHHccCchHHHHHH-------------HHHHHhcCCC
Q 039757 234 DTYAKCGCIFSALKLFEDISVE---R------KNLVSWTSIISGFAMHGMGKAAVEN-------------FERMQKVGLK 291 (415)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~---~------~~~~~~~~li~~~~~~~~~~~A~~~-------------~~~m~~~g~~ 291 (415)
-.|++- ++++..+-++.--.. + .....|.-++-.|..-.+++.|... |.+...+ .
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--V 347 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--V 347 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--C
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--c
Confidence 888876 344444444332221 0 2345577888888877777765422 1111111 3
Q ss_pred CChhhHHHHHHHHccCCc-chHHH-------------HHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCCh
Q 039757 292 PNRVTFLSVLNACSHGGL-HYGCL-------------VDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNV 357 (415)
Q Consensus 292 p~~~~~~~ll~~~~~~~~-~~~~l-------------i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 357 (415)
++...|-..|.-|..... ..+-| ++.+.+.|++.-....+...... .+...=.++-..|....|+
T Consensus 348 aN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~-N~~aVNeAln~L~IEEEDy 426 (624)
T 3lvg_A 348 ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH-NNKSVNESLNNLFITEEDY 426 (624)
T ss_dssp SCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCS-CCHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHh-hHHHHHHHHHHHHhhhhhH
Confidence 444555555554444333 22333 44444455544444444444443 3334445555666666666
Q ss_pred HH
Q 039757 358 EM 359 (415)
Q Consensus 358 ~~ 359 (415)
+.
T Consensus 427 ~~ 428 (624)
T 3lvg_A 427 QA 428 (624)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00026 Score=50.95 Aligned_cols=79 Identities=14% Similarity=-0.008 Sum_probs=68.2
Q ss_pred HHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 208 NCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
.+...|+...+. .|.+...+..+..+|...|++++|...|++.....| +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466777777776 577899999999999999999999999999988755 56789999999999999999999999987
Q ss_pred hc
Q 039757 287 KV 288 (415)
Q Consensus 287 ~~ 288 (415)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=55.62 Aligned_cols=100 Identities=12% Similarity=0.021 Sum_probs=84.4
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI----------FSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
..+.+.+++|...++...+. .|.+...|..+..++...+++ ++|+..|++..+..| +...|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34667789999999999988 688999999999999988765 599999999988866 56789999999
Q ss_pred HHccC-----------chHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 269 FAMHG-----------MGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 269 ~~~~~-----------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
|...| ++++|.+.|++..+. .|+...|...+..
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 98874 899999999999984 8988887765544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=2.6e-05 Score=59.18 Aligned_cols=89 Identities=10% Similarity=-0.050 Sum_probs=74.6
Q ss_pred hHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCCh----------HHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 318 LGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNV----------EMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
..+.+.+++|.+.++......| +...|..+..++...+++ ++|+..|+++++.+|.+..+|..++.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3456678899998887765545 677888888888887764 59999999999999999999999999999
Q ss_pred hcC-----------chhhHHHHHHHHhhhcc
Q 039757 387 GVG-----------RYVDAERLRRVMDERNA 406 (415)
Q Consensus 387 ~~g-----------~~~~A~~~~~~m~~~~~ 406 (415)
..| ++++|.+.|++..+.+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 875 89999999999887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0004 Score=48.57 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 222 NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
.|.+...+..+..+|...|++++|.+.|+++.+..| +...|..+..+|...|++++|...|++..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355777888888888888888888888888877755 466788888888888888888888888765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0005 Score=46.76 Aligned_cols=82 Identities=9% Similarity=-0.016 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCch
Q 039757 24 HTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHV 103 (415)
Q Consensus 24 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 103 (415)
+...|..+...+...|++++|+..|++.. ...+. +...+..+...+...|++++|...+++..+.. +.+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~---~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~ 77 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKAL---ELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNA 77 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCH
Confidence 45677778888888888888888888887 55444 66778888888888888888888888887764 3345
Q ss_pred hhHHHHHHHHHc
Q 039757 104 YVNTALVNMYVS 115 (415)
Q Consensus 104 ~~~~~li~~~~~ 115 (415)
..+..+..++.+
T Consensus 78 ~~~~~l~~~~~~ 89 (91)
T 1na3_A 78 EAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 556555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00033 Score=48.25 Aligned_cols=69 Identities=12% Similarity=-0.012 Sum_probs=60.5
Q ss_pred cCHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 339 TDVVVRRILLGACSFHGN---VEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 339 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
++...+..+..++...++ .++|..++++.++.+|.+..+...++..+.+.|++++|...|+++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 366778888888765555 799999999999999999999999999999999999999999999987765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0012 Score=49.39 Aligned_cols=114 Identities=7% Similarity=-0.102 Sum_probs=92.3
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGAC 351 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 351 (415)
.+++++|...|++..+.| .|+.. |...|...+.+++|.+.|+...+. .+...+..|...|
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~------------------lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y 67 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC------------------LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH------------------HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh------------------HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 347889999999998876 33332 122366677888899999877665 5778888888888
Q ss_pred hh----cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh----cCchhhHHHHHHHHhhhccc
Q 039757 352 SF----HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG----VGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 352 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 407 (415)
.. .+++++|.++|++..+. .++..+..|...|.. .+++++|.+++++..+.|..
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 87 88999999999999886 467788999999998 89999999999999887754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00076 Score=50.46 Aligned_cols=113 Identities=12% Similarity=-0.061 Sum_probs=90.1
Q ss_pred hCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH
Q 039757 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 226 (415)
.+++++|++.|++..+.+ .+.. . +...+...+.+++|...|+...+.| ++
T Consensus 8 ~~d~~~A~~~~~~aa~~g----------------------~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g----~~ 57 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN----------------------EMFG--C--LSLVSNSQINKQKLFQYLSKACELN----SG 57 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT----------------------CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT----CH
T ss_pred ccCHHHHHHHHHHHHcCC----------------------CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC----CH
Confidence 346778888887765322 1122 2 5556667778888999999999885 78
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc----cCchHHHHHHHHHHHhcCC
Q 039757 227 RVSNCLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAM----HGMGKAAVENFERMQKVGL 290 (415)
Q Consensus 227 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~ 290 (415)
..+..|..+|.. .+++++|.++|++..+. .+...+..|...|.. .+++++|..+|++..+.|.
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 888999999998 88999999999998875 577788889999988 8999999999999988753
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00019 Score=50.06 Aligned_cols=84 Identities=10% Similarity=-0.042 Sum_probs=66.1
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHH-HHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCch
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVV-VRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRY 391 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 391 (415)
....+.+.|++++|.+.|+......| +.. .+..+..++...|++++|++.|+++.+.+|.+...+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 45567889999999999988766545 556 88889999999999999999999999999887766632 566
Q ss_pred hhHHHHHHHHhhhc
Q 039757 392 VDAERLRRVMDERN 405 (415)
Q Consensus 392 ~~A~~~~~~m~~~~ 405 (415)
.++...+++....+
T Consensus 78 ~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 78 MDILNFYNKDMYNQ 91 (99)
T ss_dssp HHHHHHHCCTTHHH
T ss_pred HHHHHHHHHHhccC
Confidence 67777776555433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.02 Score=49.93 Aligned_cols=77 Identities=9% Similarity=-0.003 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHH
Q 039757 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
..|.++.+|..+...+...|++++|...++++....|+...|..+...+...|++++|...|++.... .|...||..
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 34668999999988888889999999999999998888878888888999999999999999998874 788888764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0011 Score=45.96 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=55.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcccCCCc-cHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 347 LLGACSFHGNVEMGERVTRKVLEMERGNGG-DYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
....+...|++++|++.++++.+..|.+.. .+..++.+|...|++++|...+++..+.+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 455678899999999999999999999888 9999999999999999999999999876543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.025 Score=55.86 Aligned_cols=127 Identities=9% Similarity=-0.045 Sum_probs=84.2
Q ss_pred HHcCCChhHHHH-HhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchH
Q 039757 113 YVSLGFLKDSSK-LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEI 191 (415)
Q Consensus 113 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 191 (415)
....+++++|.+ ++..+. +......++..+.+.|.+++|.++.+.- .
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~---~--------------------------- 656 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ---D--------------------------- 656 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH---H---------------------------
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc---c---------------------------
Confidence 345677777777 554443 0112266666677777777777655321 0
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 271 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~ 271 (415)
.-.......|+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|..
T Consensus 657 ---~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~ 719 (814)
T 3mkq_A 657 ---QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSS 719 (814)
T ss_dssp ---HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHH
T ss_pred ---hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHH
Confidence 0122235678888888876543 2778999999999999999999999998866 5566666777
Q ss_pred cCchHHHHHHHHHHHhc
Q 039757 272 HGMGKAAVENFERMQKV 288 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~ 288 (415)
.|+.+....+-+.....
T Consensus 720 ~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 720 FNNKEGLVTLAKDAETT 736 (814)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 77777766666555554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.039 Score=39.90 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=94.1
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHH
Q 039757 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLV 315 (415)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li 315 (415)
..-.|..++..++..+.... .+..-||-+|.-....-+-+-..++++..-+ ..|.
T Consensus 17 ~ildG~v~qGveii~k~~~s-sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi--------------------- 71 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS-STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL--------------------- 71 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG---------------------
T ss_pred HHHhhhHHHHHHHHHHHcCC-CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc---------------------
Confidence 34467778888888777663 4555567677666666666666666665533 2232
Q ss_pred HHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHH
Q 039757 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
..+|++......+-.+-. +......-+..+...|+-+.-.++...+....+++++....+..+|.+.|+..+|.
T Consensus 72 ---s~C~NlKrVi~C~~~~n~---~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 72 ---DKCQNLKSVVECGVINNT---LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp ---GGCSCTHHHHHHHHHTTC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---HhhhcHHHHHHHHHHhcc---hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHH
Confidence 345566666555544443 44556666777778888888888888766666667778888888888888888888
Q ss_pred HHHHHHhhhccc
Q 039757 396 RLRRVMDERNAL 407 (415)
Q Consensus 396 ~~~~~m~~~~~~ 407 (415)
+++.+..+.|++
T Consensus 146 eLl~~AC~kG~k 157 (172)
T 1wy6_A 146 TLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhhhH
Confidence 888888887764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00031 Score=63.58 Aligned_cols=85 Identities=8% Similarity=0.035 Sum_probs=66.7
Q ss_pred hcCCHHHHHHHHhcCCC-------C-CcCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHcc-----cCC---CccHHHHH
Q 039757 320 RAGRLEQAEKIALGIPS-------E-ITDV-VVRRILLGACSFHGNVEMGERVTRKVLEME-----RGN---GGDYVLMY 382 (415)
Q Consensus 320 ~~g~~~~A~~~~~~~~~-------~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~---~~~~~~l~ 382 (415)
..|++++|+.++++... . .|+. .+++.|..+|...|++++|+.+++++++.. +.+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35677888777754322 1 4543 489999999999999999999999998643 333 35788999
Q ss_pred HHHHhcCchhhHHHHHHHHhhh
Q 039757 383 NILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
..|...|++++|..++++..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999988753
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00067 Score=61.47 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=70.6
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCC--------CcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcc-----cCC---Ccc
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSE--------ITD-VVVRRILLGACSFHGNVEMGERVTRKVLEME-----RGN---GGD 377 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~---~~~ 377 (415)
+..+.+.|++++|+.++++.... .|+ ..+++.+..+|...|++++|+.+++++++.. +.+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34466789999999988654322 332 3488999999999999999999999988643 333 356
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 378 YVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 378 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
++.|+..|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.004 Score=52.03 Aligned_cols=90 Identities=8% Similarity=-0.038 Sum_probs=75.2
Q ss_pred CHHHHHHHHhcCCCCCcC---HHHHHHHHHHHhh-----cCChHHHHHHHHHHHHcccC-CCccHHHHHHHHHhc-Cchh
Q 039757 323 RLEQAEKIALGIPSEITD---VVVRRILLGACSF-----HGNVEMGERVTRKVLEMERG-NGGDYVLMYNILAGV-GRYV 392 (415)
Q Consensus 323 ~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~ 392 (415)
....|...+++..+..|+ -..|..|...|.. .|+.++|.+.|++.++.+|. +..++..+.+.+++. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 345667777766655455 4588888888888 49999999999999999997 599999999999985 9999
Q ss_pred hHHHHHHHHhhhccccCCCC
Q 039757 393 DAERLRRVMDERNALKFPGR 412 (415)
Q Consensus 393 ~A~~~~~~m~~~~~~~~~~~ 412 (415)
+|.+.+++..+......|++
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHHcCCCCCCCCh
Confidence 99999999999888766765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.16 Score=47.95 Aligned_cols=142 Identities=6% Similarity=-0.051 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcC-CCCchh
Q 039757 26 LLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVG-FQSHVY 104 (415)
Q Consensus 26 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~ 104 (415)
..|.....++ +.|++..+..+...+. ...+. .-..|..+.... +.. ...++-..+.+.. .+....
T Consensus 8 ~~~~~a~~a~-~~~~~~~~~~l~~~l~---~~pL~------~yl~y~~l~~~l---~~~-~~~ev~~Fl~~~~~~p~~~~ 73 (618)
T 1qsa_A 8 SRYAQIKQAW-DNRQMDVVEQMMPGLK---DYPLY------PYLEYRQITDDL---MNQ-PAVTVTNFVRANPTLPPART 73 (618)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHSGGGT---TSTTH------HHHHHHHHHHTG---GGC-CHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHhhc---CCCcH------HHHHHHHHHhCc---ccC-CHHHHHHHHHHCCCChhHHH
Confidence 3455555544 4688887777755553 21111 112333332221 211 2235555554442 233344
Q ss_pred hHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhccCC
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGILDGYTRMNRS 181 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~ 181 (415)
.-+.-+..+.+.+++...+.++.. ...+...-.....+....|+-.+|....+.+= ......+..++..+.+.|..
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCC
Confidence 455667778889999999998887 33344444456667778888766655444432 23456788888888877754
Q ss_pred C
Q 039757 182 N 182 (415)
Q Consensus 182 ~ 182 (415)
.
T Consensus 153 t 153 (618)
T 1qsa_A 153 D 153 (618)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.012 Score=58.10 Aligned_cols=102 Identities=10% Similarity=0.110 Sum_probs=73.3
Q ss_pred HHhhcCCChHHHHH-HHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 33 HFYSLADSPKKAFL-LYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 33 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
......+++++|.+ ++..+ | +......++..+.+.|.++.|.++.+. |. .-..
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-----------~---~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~ 660 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-----------E---GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFE 660 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-----------C---CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHH
T ss_pred hHHHHhCCHHHHHHHHHhcC-----------C---chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hhee
Confidence 33445788888876 44221 1 234447777888888888887766531 11 1133
Q ss_pred HHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCC
Q 039757 112 MYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC 162 (415)
Q Consensus 112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (415)
.....|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++..
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 4567899999999988774 567899999999999999999999999864
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.92 E-value=6.1e-06 Score=73.28 Aligned_cols=257 Identities=11% Similarity=0.026 Sum_probs=169.3
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhccC
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~ 180 (415)
+.+|..|..+....+++.+|++-|-+. .|+..|..+|....+.|.+++-++.+...++ .+...-+.|+.+|.+.++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 445777777777777777776555333 4556677888888888888888888776663 455556678888888777
Q ss_pred CCCcc---CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 039757 181 SNGAS---TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK 257 (415)
Q Consensus 181 ~~~a~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 257 (415)
..+-. ..|+..-...+..-|...|.++.|.-+|..+..- .-|..++.+.|++..|.+.-++. .
T Consensus 132 L~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~----------akLAstLV~L~~yq~AVdaArKA----n 197 (624)
T 3lvg_A 132 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF----------GRLASTLVHLGEYQAAVDGARKA----N 197 (624)
T ss_dssp SSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC----------TTTSSSSSSCSGGGSSTTTTTTC----C
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH----------HHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 66544 5566666677777788888888887777655433 23455566777777766554433 5
Q ss_pred ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 039757 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE 337 (415)
Q Consensus 258 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (415)
++.||..+-.+|...+++.-|.-.--.++- .||... .++..|...|.+++-+.+++.-...
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---hadeL~----------------elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADELE----------------ELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSCCS----------------GGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHHHH----------------HHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 677888888888888887766544433332 233321 2566688899999988888766544
Q ss_pred -CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHH-cccC-------CCccHHHHHHHHHhcCchhhHH
Q 039757 338 -ITDVVVRRILLGACSFHGNVEMGERVTRKVLE-MERG-------NGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 338 -~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~-------~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
+.....|+-|.-.|++- ++++.++.++.... .+.| ....|..++-.|..-..|+.|.
T Consensus 259 ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 45677888888777766 56666665554322 1111 3456666666676666666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0025 Score=57.70 Aligned_cols=86 Identities=9% Similarity=-0.014 Sum_probs=69.1
Q ss_pred hcCChhHHHHHHhhhhhc-----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CC---C-hhhHHHHH
Q 039757 202 QNGAVRNCQLIHGYGEKR-----GFN-AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RK---N-LVSWTSII 266 (415)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~---~-~~~~~~li 266 (415)
..|++++|+.++++.++. |-. |....+++.|..+|...|++++|..++++.... ++ + ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467889999999887753 111 223567899999999999999999999998765 33 3 35699999
Q ss_pred HHHHccCchHHHHHHHHHHHh
Q 039757 267 SGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~ 287 (415)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0052 Score=55.66 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=73.7
Q ss_pred hHHHHHhhcCChhHHHHHHhhhhhcC---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-----CC---C-h
Q 039757 195 AVLPAIWQNGAVRNCQLIHGYGEKRG---FNA---FDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-----RK---N-L 259 (415)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~---~-~ 259 (415)
..+..+.+.|++++|+.++++..+.. ..+ ....+++.|...|...|++++|+.+++++... ++ + .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33455667899999999999887542 112 23567889999999999999999999988765 33 2 3
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5699999999999999999999998754
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0091 Score=52.02 Aligned_cols=138 Identities=7% Similarity=-0.045 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHc----cC----chHHHHHHHHHHHhc
Q 039757 223 AFDIRVSNCLIDTYA--KCG---CIFSALKLFEDISVERKN-LVSWTSIISGFAM----HG----MGKAAVENFERMQKV 288 (415)
Q Consensus 223 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~----~~----~~~~A~~~~~~m~~~ 288 (415)
|.+...|...+++.. ..+ +..+|..+|++..+..|+ ...|..+..+|.. .+ ........++.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 446666666665433 223 346777777777776554 3344443333321 10 111111122222111
Q ss_pred CC-CCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 289 GL-KPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 289 g~-~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
.. ..+...|.. +...+...|++++|...+++.....|+...|..+...+...|++++|.+.++++
T Consensus 271 ~~~~~~a~~~~a--------------lal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 271 PELNNLSIIYQI--------------KAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp GGGTTCHHHHHH--------------HHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCcCHHHHHH--------------HHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 223333332 333344568888888887766655567777778888888888888888888888
Q ss_pred HHcccCC
Q 039757 368 LEMERGN 374 (415)
Q Consensus 368 ~~~~~~~ 374 (415)
...+|..
T Consensus 337 lrL~P~~ 343 (372)
T 3ly7_A 337 FNLRPGA 343 (372)
T ss_dssp HHHSCSH
T ss_pred HhcCCCc
Confidence 8877754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.023 Score=38.76 Aligned_cols=66 Identities=11% Similarity=-0.072 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 223 AFDIRVSNCLIDTYAKCGC---IFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
|.++..+..+..++...++ .++|..+|++.....| ++.....+...+.+.|++++|...|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3355555555555543333 5666666666665544 3455555566666666666666666666654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0044 Score=46.41 Aligned_cols=83 Identities=10% Similarity=-0.050 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcc-c-CCCccHHHHHHHHHhcCchhhHHHH
Q 039757 324 LEQAEKIALGIPSE-ITDVVVRRILLGACSFHG---NVEMGERVTRKVLEME-R-GNGGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 324 ~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
+..+.+-|.+.... .++..+...+..++++.+ +.++++.+++...+.+ | .+...+..|..+|.+.|++++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34445555433222 467788888888899888 6679999999999987 4 2577888899999999999999999
Q ss_pred HHHHhhhcc
Q 039757 398 RRVMDERNA 406 (415)
Q Consensus 398 ~~~m~~~~~ 406 (415)
++.+.+...
T Consensus 94 ~~~lL~ieP 102 (152)
T 1pc2_A 94 VRGLLQTEP 102 (152)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhcCC
Confidence 998876543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.28 Score=37.70 Aligned_cols=129 Identities=12% Similarity=0.120 Sum_probs=84.2
Q ss_pred HHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCch
Q 039757 111 NMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190 (415)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 190 (415)
+.....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+...
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------------------- 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------------------- 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------------------
Confidence 4456788888888887776 4667899999999999999999999988864
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHH
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 270 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~ 270 (415)
+..+.-.|.-.|+.++...+-+.....| -++....++...|+++++.++|.+.... .--.....
T Consensus 63 --~~~L~~Ly~~tg~~e~L~kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~r~-------~eA~~~A~ 126 (177)
T 3mkq_B 63 --FDKLSFLYLVTGDVNKLSKMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGGSL-------PLAYAVAK 126 (177)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTTCH-------HHHHHHHH
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCCCh-------HHHHHHHH
Confidence 2233334444566655555544444443 1344555677788999999988765541 11111122
Q ss_pred ccCchHHHHHHHHHH
Q 039757 271 MHGMGKAAVENFERM 285 (415)
Q Consensus 271 ~~~~~~~A~~~~~~m 285 (415)
..|-.+.|.++.+++
T Consensus 127 t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 127 ANGDEAAASAFLEQA 141 (177)
T ss_dssp HTTCHHHHHHHHHHT
T ss_pred HcCcHHHHHHHHHHh
Confidence 256667777777665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.089 Score=44.02 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=76.4
Q ss_pred ChhHHHHHHhhhhhcCCCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhhCC--ChhhHHHHHHHHHcc-Cc
Q 039757 205 AVRNCQLIHGYGEKRGFNAF--DIRVSNCLIDTYAKC-----GCIFSALKLFEDISVERK--NLVSWTSIISGFAMH-GM 274 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~-~~ 274 (415)
....|...+++.++. .|. +...|..|...|.+. |+.++|.+.|++.....| +..++......++.. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 456777788888887 564 567899999999995 999999999999999877 378888899999885 99
Q ss_pred hHHHHHHHHHHHhcCCC--CChhhHHH
Q 039757 275 GKAAVENFERMQKVGLK--PNRVTFLS 299 (415)
Q Consensus 275 ~~~A~~~~~~m~~~g~~--p~~~~~~~ 299 (415)
.+++...+++....... |+....+.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 99999999999997666 66554443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.072 Score=39.85 Aligned_cols=94 Identities=9% Similarity=-0.030 Sum_probs=71.5
Q ss_pred ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhhC-C--ChhhHHHHHHHHHccCchHHH
Q 039757 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCG---CIFSALKLFEDISVER-K--NLVSWTSIISGFAMHGMGKAA 278 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~A 278 (415)
....+++-|....+.+ +.+..+...+..++++++ +.++++.+|+++.+.. | +...+-.|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 4456666777666654 348888888999999988 6669999999988875 5 345566677788999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHH
Q 039757 279 VENFERMQKVGLKPNRVTFLSVLN 302 (415)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~ 302 (415)
.+.++.+.+. .|+..--..+..
T Consensus 91 ~~y~~~lL~i--eP~n~QA~~Lk~ 112 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHH
Confidence 9999999984 787665554433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.03 Score=39.17 Aligned_cols=69 Identities=17% Similarity=0.081 Sum_probs=50.2
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCC--------CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHH
Q 039757 313 CLVDMLGRAGRLEQAEKIALGIPSE--------ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 381 (415)
.+...+.+.|+++.|...|+..... .+....+..|..++.+.|+++.|...++++.+..|.+..+...+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 4677788888888888887654432 12455777888888888888888888888888887766554433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.67 Score=42.03 Aligned_cols=194 Identities=10% Similarity=0.022 Sum_probs=118.6
Q ss_pred CCCchHHHHHHHHHHc-----CCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCc---hhhHHHHHHHHHhhCCHHHH
Q 039757 82 SYPNLGTQLHAVISKV-----GFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERN---LVTWNVMITGLVKWGELEYA 153 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a 153 (415)
|+++.|.+.+-.+.+. ...-.......++..|...|+++...+.+..+.+.. ...-..++. .+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~---------~~ 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQ---------KV 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHH---------HH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHH---------HH
Confidence 5667777766555432 223345667778888999999988877665554321 112222222 23
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCC---chHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCC----H
Q 039757 154 RSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEP---SEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFD----I 226 (415)
Q Consensus 154 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 226 (415)
...+.....++..+...++..... ..+..... .......+...+...|++.+|..++..+...-....+ .
T Consensus 101 ~~~l~~~~~~d~~~~~~~i~~l~~---vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kv 177 (445)
T 4b4t_P 101 MEYLKSSKSLDLNTRISVIETIRV---VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKI 177 (445)
T ss_dssp HHHHHHHCTTHHHHHHHHHHCCSS---SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 344444444444444333332211 11111111 2233456777888999999999999988754221212 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhh----CCCh----hhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVE----RKNL----VSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
..+..-++.|...+++.+|..+++++... .++. ..|...+..+...+++.+|...|.+.-.
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56677788999999999999999987543 2222 3467778888889999999888877754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.078 Score=36.95 Aligned_cols=70 Identities=7% Similarity=-0.053 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--------CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDISVER--------KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
+..-+..|...+.+.|+++.|...|+...... +....+..|..+|.+.|++++|...+++..+. .|+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence 34445556666666677777777666655431 12345666667777777777777777766653 555433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.6 Score=45.07 Aligned_cols=55 Identities=13% Similarity=0.004 Sum_probs=43.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 348 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
..-|...|+++.|+++.++.....|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3345667888888888888888888888888888888888888888888887774
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.77 Score=35.26 Aligned_cols=126 Identities=10% Similarity=-0.055 Sum_probs=78.2
Q ss_pred hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHH
Q 039757 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVE 280 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 280 (415)
...|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|.-.|+.++..+
T Consensus 16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHHH
Confidence 4577888888776654 1677888888888888888888888887765 5666666777777766655
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHH
Q 039757 281 NFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMG 360 (415)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 360 (415)
+-+.....| -++. -...+...|+++++.++|.+.... |.... + ....|-.+.|
T Consensus 82 la~iA~~~g------~~n~--------------af~~~l~lGdv~~~i~lL~~~~r~-~eA~~---~---A~t~g~~~~a 134 (177)
T 3mkq_B 82 MQNIAQTRE------DFGS--------------MLLNTFYNNSTKERSSIFAEGGSL-PLAYA---V---AKANGDEAAA 134 (177)
T ss_dssp HHHHHHHTT------CHHH--------------HHHHHHHHTCHHHHHHHHHHTTCH-HHHHH---H---HHHTTCHHHH
T ss_pred HHHHHHHCc------cHHH--------------HHHHHHHcCCHHHHHHHHHHCCCh-HHHHH---H---HHHcCcHHHH
Confidence 544444432 1111 223356678888888887666543 21111 1 1124455666
Q ss_pred HHHHHHH
Q 039757 361 ERVTRKV 367 (415)
Q Consensus 361 ~~~~~~~ 367 (415)
.++.+.+
T Consensus 135 ~~~~~~~ 141 (177)
T 3mkq_B 135 SAFLEQA 141 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=2.4 Score=40.08 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=26.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhhCCC-hhhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 233 IDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
+....+.|+++.|...|+.|.....+ ..-.-=+..++...|+.++|..+|+.+.
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33344456666666666655443111 1112223334455566666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.42 Score=34.36 Aligned_cols=63 Identities=13% Similarity=-0.088 Sum_probs=41.2
Q ss_pred HHhHhcCCHHH---HHHHHhcCCCCC-c--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccH
Q 039757 316 DMLGRAGRLEQ---AEKIALGIPSEI-T--DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDY 378 (415)
Q Consensus 316 ~~~~~~g~~~~---A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 378 (415)
.++.+...... ++.+++++.... | .....-.|.-++.+.|++++|.++++.+++..|.+..+.
T Consensus 43 w~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 43 WCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 33555554444 677777666552 4 222444566678888888888888888888888765443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.03 E-value=3.5 Score=40.86 Aligned_cols=276 Identities=10% Similarity=0.020 Sum_probs=148.6
Q ss_pred HHHHHHHHhcCCCc-hHHHHH-HHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCC----Cchh--hHHHHHHH
Q 039757 72 SFLIRTCVTLSYPN-LGTQLH-AVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPE----RNLV--TWNVMITG 143 (415)
Q Consensus 72 ~~l~~~~~~~~~~~-~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~li~~ 143 (415)
.++..++...|--. ...... +++-+. .+....-...--+....|+.++++.+++.... .+.. .-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 45677888888443 323322 333332 23333333333557788999999999988664 2222 22334444
Q ss_pred HHhhCCHHHHHHHHhhCCC-CC----------hhHHHHHHHHHHhccCCCC-cc-------CCCch----HHHHhHHHHH
Q 039757 144 LVKWGELEYARSLFEEMPC-RN----------VVSWTGILDGYTRMNRSNG-AS-------TEPSE----ITILAVLPAI 200 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~-~~----------~~~~~~li~~~~~~~~~~~-a~-------~~~~~----~~~~~ll~~~ 200 (415)
.+..|..+++..++..... ++ +..-.++.-++.-.|.-++ +. ...+. ..-..+.-.+
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 5566666677776665442 22 1111222222322332221 11 11111 1111223334
Q ss_pred hhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhhhhCCChhh-HH---HHHHHHHccCc
Q 039757 201 WQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLID--TYAKCGCIFSALKLFEDISVERKNLVS-WT---SIISGFAMHGM 274 (415)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~---~li~~~~~~~~ 274 (415)
.-.|+.+....++..+.+.. +..+...+.- ++...|+.+.+..+.+.+... .+... |. ++..+|+..|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~~----~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ----HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 55677788888888776542 2333333443 444678888888888887764 33322 33 34456778889
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhh
Q 039757 275 GKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSF 353 (415)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~ 353 (415)
......++..+... ++...-...+ +.-++...|+.+.+.++++.+... .|.+..-..+.-+...
T Consensus 576 ~~aIq~LL~~~~~d---~~d~VRraAV------------iaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 576 NSAVKRLLHVAVSD---SNDDVRRAAV------------IALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp HHHHHHHHHHHHHC---SCHHHHHHHH------------HHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccC---CcHHHHHHHH------------HHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 88777799988874 3333222222 333455566667777777755544 3444444455555555
Q ss_pred cCCh-HHHHHHHHHHHH
Q 039757 354 HGNV-EMGERVTRKVLE 369 (415)
Q Consensus 354 ~~~~-~~a~~~~~~~~~ 369 (415)
.|+. .+++..+..+..
T Consensus 641 aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 641 AGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSSCCHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHcc
Confidence 5554 577778887764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.99 E-value=0.06 Score=38.75 Aligned_cols=84 Identities=10% Similarity=-0.103 Sum_probs=62.5
Q ss_pred CCHHHHHHHHhcCCC-CCcCHHHHHHHHHHHhhcCChHH---HHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHH
Q 039757 322 GRLEQAEKIALGIPS-EITDVVVRRILLGACSFHGNVEM---GERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 322 g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
..+..+.+-|.+... ..|+..+-..+..++.+.++... ++.+++.+...+.| .......|+.++.+.|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444555543322 13677787788889998887766 88999988887632 5567778999999999999999
Q ss_pred HHHHHHhhhc
Q 039757 396 RLRRVMDERN 405 (415)
Q Consensus 396 ~~~~~m~~~~ 405 (415)
++++.+.+..
T Consensus 95 ~~~~~lL~~e 104 (126)
T 1nzn_A 95 KYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999987654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.87 E-value=1.3 Score=32.14 Aligned_cols=66 Identities=14% Similarity=-0.021 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh-hhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCC
Q 039757 225 DIRVSNCLIDTYAKCGCIFSALKLFEDI-SVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290 (415)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 290 (415)
+.......++.....|+-+.-.+++..+ ...+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344445555556666666666666663 33345555555666666666666666666666655554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.37 Score=43.68 Aligned_cols=188 Identities=14% Similarity=0.088 Sum_probs=116.4
Q ss_pred cCChhHHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CChhhHHHHHHHHHccCchHH
Q 039757 203 NGAVRNCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKA 277 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~ 277 (415)
.++++.|...+-.+.+. +-.+........++..|...|+++...+.+.-+.... .....-..+++.+.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~------- 101 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVM------- 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHH-------
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------
Confidence 37788888777666543 2123356778888999999999999888777665532 11222233333221
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHcc--CCc---------chHHHHHHhHhcCCHHHHHHHHhcCCCC----C---c
Q 039757 278 AVENFERMQKVGLKPNRVTFLSVLNACSH--GGL---------HYGCLVDMLGRAGRLEQAEKIALGIPSE----I---T 339 (415)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~---------~~~~li~~~~~~g~~~~A~~~~~~~~~~----~---p 339 (415)
..+.... .++..+...++..... .|. ....|...|...|++.+|.+++.++... . -
T Consensus 102 --~~l~~~~----~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~ 175 (445)
T 4b4t_P 102 --EYLKSSK----SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE 175 (445)
T ss_dssp --HHHHHHC----TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH
T ss_pred --HHHhcCC----chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH
Confidence 1111110 1122222222222111 111 1134788899999999999998776432 1 1
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc---cCC----CccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEME---RGN----GGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
-...+...++.|...+|+..|..+++++.... +++ ...+...+..+...++|.+|.+.|.+.-+
T Consensus 176 kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 176 KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 24477778889999999999999999985422 122 24566788888899999999888877644
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.15 Score=45.30 Aligned_cols=60 Identities=10% Similarity=-0.141 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 344 RRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
...++..+...|++++++..+..+....|-+...+..++.+|.+.|+..+|.+.|+++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677778888888888888777777777788888888888888888877777654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.28 E-value=2 Score=32.44 Aligned_cols=58 Identities=10% Similarity=-0.075 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCh-------hhHHHHHHHHHccCchHHHHHHHHHHH
Q 039757 229 SNCLIDTYAKCGCIFSALKLFEDISVE---RKNL-------VSWTSIISGFAMHGMGKAAVENFERMQ 286 (415)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~ 286 (415)
+-.-+..+...|.++.|+-+.+.+... +|++ .++..+.+++...|++.+|...|++..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 334455566666777766666654333 2332 235556667777777777777777753
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.46 Score=42.20 Aligned_cols=71 Identities=15% Similarity=0.355 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh-----cCCCCChhhHH
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQK-----VGLKPNRVTFL 298 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~ 298 (415)
+...++..+...|++++|...+..+....| +...|..+|.++.+.|+..+|+..|++..+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445577888899999999999988877755 777899999999999999999999998755 49999888744
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.06 E-value=3 Score=42.99 Aligned_cols=192 Identities=10% Similarity=0.040 Sum_probs=115.2
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh--------------------
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-------------------- 255 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------- 255 (415)
++..+...+..+.+..+.... +.++...-.+..+|...|++++|.+.|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344455556666665544332 335555567788999999999999999886322
Q ss_pred -C---CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHH
Q 039757 256 -R---KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIA 331 (415)
Q Consensus 256 -~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (415)
. .-..-|..++..+-+.+.++.+.++-+...+.. .++......- .|..+.......|++++|...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~---------l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIA---------ITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHH---------HHHHHHHHHHHHCCSGGGGHHH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHH---------HHHHHHHHHHhhCCHHHHHHHH
Confidence 0 011237788888889999999888877766542 2222221111 1334677788889999998887
Q ss_pred hcCCCCCcCHHHHHHHHHHHhhcCCh------------HHHHHHHHHHHH-c-ccCCC-ccHHHHHHHHHhcCchhhHHH
Q 039757 332 LGIPSEITDVVVRRILLGACSFHGNV------------EMGERVTRKVLE-M-ERGNG-GDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 332 ~~~~~~~p~~~~~~~l~~~~~~~~~~------------~~a~~~~~~~~~-~-~~~~~-~~~~~l~~~~~~~g~~~~A~~ 396 (415)
-.+....-.......|+..+|..|+. ++..+++..-.+ . .+.+. .-|..|-.-+...|++..|-.
T Consensus 962 ~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B 962 MVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHH
Confidence 65543322344566676666665544 444444443322 2 23332 335555666677888887765
Q ss_pred H-HHHHhh
Q 039757 397 L-RRVMDE 403 (415)
Q Consensus 397 ~-~~~m~~ 403 (415)
+ ++...+
T Consensus 1042 vmYe~~~R 1049 (1139)
T 4fhn_B 1042 IIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 5 444433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.03 E-value=0.43 Score=35.37 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=70.0
Q ss_pred ChhhHHHHHHHHHccCch------HHHHHHHHHHHhcCCCCChh-hHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHH
Q 039757 258 NLVSWTSIISGFAMHGMG------KAAVENFERMQKVGLKPNRV-TFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKI 330 (415)
Q Consensus 258 ~~~~~~~li~~~~~~~~~------~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (415)
|..+|-..+...-+.|++ ++...+|++.... +.|+.. .+...+.-+.+ |. .+...++.++|.++
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIr----YA----~~~ei~D~d~aR~v 82 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVR----FA----ELKAIQEPDDARDY 82 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHH----HH----HHHHHHCGGGCHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHH----HH----HHHHhcCHHHHHHH
Confidence 445555555555555555 5556666665543 333321 11111111100 11 12344788888888
Q ss_pred HhcCCCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 331 ALGIPSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 331 ~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
|+.+... ..=...|-...+--.+.|+...|.+++.+.+..++.+...+...++-+
T Consensus 83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 8766322 012567777777778899999999999999998888777776666544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.98 E-value=4 Score=35.01 Aligned_cols=48 Identities=10% Similarity=0.067 Sum_probs=29.0
Q ss_pred ChhHHHHHHhhhhhcCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 039757 205 AVRNCQLIHGYGEKRGFN---AFDIRVSNCLIDTYAKCGCIFSALKLFEDI 252 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 252 (415)
..++...-++.-++.|-. =.-...|.++..-|.+.+++++|.+++..-
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 344444444444554421 002345667777789999999999987653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.76 E-value=1.1 Score=39.59 Aligned_cols=165 Identities=12% Similarity=-0.072 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhh--C----CChhhHHHHHHHHHccC-chHHHHHHHHHHHhcCCCCChhhH-H
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVE--R----KNLVSWTSIISGFAMHG-MGKAAVENFERMQKVGLKPNRVTF-L 298 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~-~ 298 (415)
.....|...|.+.|+.++..+++.....- . .....-..++..+.... ..+.-.++..+..+..- -+..+| .
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34456888889999999888888876554 0 12233556666666543 33444444444443211 112232 2
Q ss_pred HHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC--C---c--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcc
Q 039757 299 SVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE--I---T--DVVVRRILLGACSFHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 299 ~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 371 (415)
.-+.. .|+..|...|++.+|.+++.++... . + -...+-.-++.|...++..++...+.......
T Consensus 99 ~~l~~---------kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 99 QSLEA---------RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 21211 3788899999999998887665443 1 1 23356667778889999999999998886543
Q ss_pred --c-CCCc----cHHHHHHHHH-hcCchhhHHHHHHHH
Q 039757 372 --R-GNGG----DYVLMYNILA-GVGRYVDAERLRRVM 401 (415)
Q Consensus 372 --~-~~~~----~~~~l~~~~~-~~g~~~~A~~~~~~m 401 (415)
. +++. ....-+..+. ..++|.+|...|-+.
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2 2222 2233444566 789999998887664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.21 E-value=1.1 Score=33.81 Aligned_cols=133 Identities=8% Similarity=-0.042 Sum_probs=68.8
Q ss_pred CCcchHHHHHHH--HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHc
Q 039757 20 SLLHHTLLFNTL--LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKV 97 (415)
Q Consensus 20 ~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 97 (415)
++.|-...|+.+ ++.+...|.++.|+-+.+.+......+...+++..-..++..+..++...|++..|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 366666655544 778889999999999999877532332210010001135677788899999999999999997542
Q ss_pred C--CCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 98 G--FQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 98 g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
. +.-+..++.++- ....... -++. ..+...-.-+..+|.+.|++++|+.+++.+.
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---s~~~--~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---SQCL--PSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHCC---------------------------CC--CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhcCCCcccccc----ccCCCcc---cccc--cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1 111111111110 0000000 0111 1233444446777777777777777777765
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.99 E-value=0.82 Score=33.89 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHhhcCCCh------HHHHHHHHHHHHHhhcCCCCCCCCCCc-hhHHHHHHH------HHhcCCCchHHH
Q 039757 23 HHTLLFNTLLHFYSLADSP------KKAFLLYKQLQQIYTHSHSPLRPLFDS-FTYSFLIRT------CVTLSYPNLGTQ 89 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~------~~~~~~~~~a~~ 89 (415)
-|..+|=..+...-+.|++ ++..++|++.. .. ++ | +. ..|..-+.. +...+++++|.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi---a~-~P--p---~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~ 81 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI---EA-LP--P---DKYGQNESFARIQVRFAELKAIQEPDDARD 81 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH---HH-SC--G---GGGTTCHHHHHHHHHHHHHHHHHCGGGCHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH---Hc-CC--c---cccccHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4677888888888888998 88888888887 22 22 2 21 111111111 123378999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 90 LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
+|+.+++.+-.- ...|......-.+.|+++.|.+++....
T Consensus 82 vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 82 YFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 999997764333 7777777777888899999988887654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.86 E-value=7.1 Score=40.23 Aligned_cols=159 Identities=12% Similarity=0.057 Sum_probs=94.3
Q ss_pred HHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCC---C------hhHHHHHHHHHHhc
Q 039757 108 ALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR---N------VVSWTGILDGYTRM 178 (415)
Q Consensus 108 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~------~~~~~~li~~~~~~ 178 (415)
.++..+...+..+.+..+..-..+ +......+..+|...|++++|.+.|++.... + ...+..+.....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~-- 893 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH-- 893 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT--
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc--
Confidence 455666777888777776655543 4444456778899999999999999887521 1 011111110000
Q ss_pred cCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 179 NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA-FD--IRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 179 ~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
. ...-..-|..++..+.+.+.++.+.++-....+..... ++ ...|..+.+.+...|++++|...+-.+...
T Consensus 894 --~----~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 894 --H----QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp --S----CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred --c----cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 0 11112335666777777777777777666655542111 11 125677778888888888888887777654
Q ss_pred CCChhhHHHHHHHHHccCch
Q 039757 256 RKNLVSWTSIISGFAMHGMG 275 (415)
Q Consensus 256 ~~~~~~~~~li~~~~~~~~~ 275 (415)
..-......|+...|..|..
T Consensus 968 ~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHhCCCh
Confidence 33344566666666665543
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.61 E-value=1.9 Score=33.74 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCCCCcCHH---HHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHH
Q 039757 324 LEQAEKIALGIPSEITDVV---VRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLR 398 (415)
Q Consensus 324 ~~~A~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 398 (415)
++++.+.|.....-..|+. .|-..+..+ ..++...+..+|..|...+.. -+..|...+..+...|++.+|.+++
T Consensus 60 LErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 60 MERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555554432234554 444444433 244577999999999998877 4567888999999999999999999
Q ss_pred HHHhhhcccc
Q 039757 399 RVMDERNALK 408 (415)
Q Consensus 399 ~~m~~~~~~~ 408 (415)
+.-.+.+-.|
T Consensus 139 ~~GI~~~A~P 148 (202)
T 3esl_A 139 ELGAENNCRP 148 (202)
T ss_dssp HHHHHTTCBS
T ss_pred HHHHHcCCcc
Confidence 9988877665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.52 E-value=1.9 Score=31.60 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=53.2
Q ss_pred CcCHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcccC-CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 338 ITDVVVRRILLGACSFHGNV---EMGERVTRKVLEMERG-NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 338 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.|+..+--.+..++.++.+. .+++.+++.+...++. .......|..++.+.|++++|.++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 47777777788888887754 5788888888887765 45566788889999999999999998877643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.94 E-value=3.3 Score=28.18 Aligned_cols=65 Identities=6% Similarity=0.031 Sum_probs=49.0
Q ss_pred hcC-ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHH
Q 039757 202 QNG-AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIIS 267 (415)
Q Consensus 202 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~ 267 (415)
+.. |.-+.++-++.+......| ++.+..+.+++|-+.+++..|.++|+.++.. +....+|..+++
T Consensus 21 ~~~iD~~e~rrglN~l~~~DlVP-~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 21 KPDIDAWELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344 5566777778888877777 8888899999999999999999999888776 333445666654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.60 E-value=1.2 Score=32.10 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=53.8
Q ss_pred CcCHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcccC-CCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 338 ITDVVVRRILLGACSFHGNV---EMGERVTRKVLEMERG-NGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 338 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
.|+..+--.+..++.+..+. .+++.+++.+...++. ....+..|..++.+.|++++|.++.+.+.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 47777777778888877654 5788888888887764 45677789999999999999999998877543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.88 E-value=12 Score=33.08 Aligned_cols=173 Identities=10% Similarity=-0.035 Sum_probs=108.7
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCC---CCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhh-CCChhhH--
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNA---FDIRVSNCLIDTYAKCG-CIFSALKLFEDISVE-RKNLVSW-- 262 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~-~~~~~~~-- 262 (415)
+.....+...|...|+.++...++.....-=... ........+++.+.... ..+.-.++..+..+. ...-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888999988888877665421111 13455677888877654 445555555554443 1122233
Q ss_pred ----HHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-
Q 039757 263 ----TSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE- 337 (415)
Q Consensus 263 ----~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 337 (415)
..++..|...|++.+|.+++.++.+.=-+.|..++. +.. |-.-+..|...+++.++...+......
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~l--lev-------~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLL--VEV-------QLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHH--HHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhH--HHH-------HHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 257889999999999999999988742233433333 332 223778899999999998888654322
Q ss_pred --C-cCHHHHHH----HHHHHh-hcCChHHHHHHHHHHHHcc
Q 039757 338 --I-TDVVVRRI----LLGACS-FHGNVEMGERVTRKVLEME 371 (415)
Q Consensus 338 --~-p~~~~~~~----l~~~~~-~~~~~~~a~~~~~~~~~~~ 371 (415)
. |++..... -...+. ..+++..|...|-+..+..
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 1 33332211 122356 7899999998888876443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.61 E-value=10 Score=32.14 Aligned_cols=180 Identities=9% Similarity=0.005 Sum_probs=83.7
Q ss_pred hhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHH----HH
Q 039757 206 VRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAV----EN 281 (415)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~----~~ 281 (415)
+++...-++.-++.|-.=.-...|.++..-|.+.+++++|.+++..-.. .+.++|+...|- -+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~-------------~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL-------------SFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHH
Confidence 4444444444444441111245566777788899999999998765332 123334333322 23
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCC-CcCHHHHHHHHHHHhhcCChHHH
Q 039757 282 FERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSE-ITDVVVRRILLGACSFHGNVEMG 360 (415)
Q Consensus 282 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a 360 (415)
++-..+.++.++......++.-+..-...- -.+..-+.+|++.-.+.... ..++.....+...|.+.|++.+|
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~------~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSE------PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTC------TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCC------chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 333444455555544444333221100000 00000122233332222211 23555566666666666666655
Q ss_pred HHHHHH----------------HHHc--ccC-CCccHH-HHHHHHHhcCchhhHHHHHHHHhhh
Q 039757 361 ERVTRK----------------VLEM--ERG-NGGDYV-LMYNILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 361 ~~~~~~----------------~~~~--~~~-~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~ 404 (415)
...|-. ..+. +.+ ....|. ..+--|.-.|+...|..+++...+.
T Consensus 154 ~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 154 ERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 554321 1111 111 122221 2233456788999999998877643
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=87.99 E-value=3.6 Score=30.62 Aligned_cols=81 Identities=14% Similarity=-0.052 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHh
Q 039757 325 EQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMD 402 (415)
Q Consensus 325 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 402 (415)
+.+.+.|.....-..|+.....-+.. +. ..+++..+|..|...+.. -+..|...+..+...|++.+|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~y-a~--~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKF-AE--YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHH-HT--TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHH-HH--hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566664433223455433333322 11 124489999999998877 45678889999999999999999999988
Q ss_pred hhcccc
Q 039757 403 ERNALK 408 (415)
Q Consensus 403 ~~~~~~ 408 (415)
+.+-.|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 877665
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.92 E-value=12 Score=31.85 Aligned_cols=182 Identities=10% Similarity=-0.010 Sum_probs=103.7
Q ss_pred HHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCch-
Q 039757 8 TTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNL- 86 (415)
Q Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~- 86 (415)
..+-++.-+..|...---..|-++..-|.+.+++++|++++..-- ..+.+.|+...
T Consensus 16 ~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga-----------------------~~ll~~~Q~~sa 72 (312)
T 2wpv_A 16 TLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGA-----------------------LSFLKAKQGGSG 72 (312)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------HHHHHTTCHHHH
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----------------------HHHHHCCCcchH
Confidence 334444445555555555566677777777777777777654332 12233344333
Q ss_pred ---HHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh-HHHHHhcccC----------CCchhhHHHHHHHHHhhCCHHH
Q 039757 87 ---GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK-DSSKLFDELP----------ERNLVTWNVMITGLVKWGELEY 152 (415)
Q Consensus 87 ---a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~ 152 (415)
+.-+.+...+.+.+++......++..+.....-+ .=.++++.+. .-|+..+..+...|.+.|++.+
T Consensus 73 ~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~ 152 (312)
T 2wpv_A 73 TDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYE 152 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHH
Confidence 3334555556677777777777777765543211 1123333332 1477788999999999999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhc---cCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhh
Q 039757 153 ARSLFEEMPCRNVVSWTGILDGYTRM---NRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGE 217 (415)
Q Consensus 153 a~~~~~~m~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (415)
|...|-.-...+...+..++--+.+. |...+ .+...-..++ .+...++...|..++....
T Consensus 153 A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e----~dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 153 AERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST----VAEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH----HHHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch----HHHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 99988744333566777776666654 21111 1111122222 2445667777777666544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.80 E-value=6.2 Score=28.53 Aligned_cols=62 Identities=6% Similarity=0.029 Sum_probs=46.8
Q ss_pred ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHH
Q 039757 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIIS 267 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~ 267 (415)
|.-+..+-++.+......| ++.+..+.+++|-+.+++..|.++|+.++.. ++...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVP-eP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 5556677777777777777 8888888888998889999999998888776 344445666654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.36 E-value=13 Score=31.84 Aligned_cols=184 Identities=11% Similarity=-0.027 Sum_probs=109.0
Q ss_pred hHHHHHHhHhhccCC---cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCC
Q 039757 7 VTTRIHSHLLTTNSL---LHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSY 83 (415)
Q Consensus 7 ~~~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 83 (415)
...+-++.-+..|.. .---..|-++..-|.+.+++++|++++-.-- ..+.+.|+
T Consensus 14 ~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA-----------------------~~ll~~~Q 70 (336)
T 3lpz_A 14 RIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS-----------------------QTLLRSGQ 70 (336)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------HHHHHTTC
T ss_pred HHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-----------------------HHHHHCCC
Confidence 334444555566654 4444567777777888888888888654432 12233343
Q ss_pred Cch----HHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChh-HHHHHhcccC----------CCchhhHHHHHHHHHhhC
Q 039757 84 PNL----GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK-DSSKLFDELP----------ERNLVTWNVMITGLVKWG 148 (415)
Q Consensus 84 ~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~----------~~~~~~~~~li~~~~~~g 148 (415)
... +.-+.+...+.++++|......++..+.....-+ .=.++++++. .-|+.....+...|.+.+
T Consensus 71 ~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~ 150 (336)
T 3lpz_A 71 GGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG 150 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC
Confidence 333 3344455566777788777777777776655321 1122333332 246778888999999999
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhh
Q 039757 149 ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218 (415)
Q Consensus 149 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (415)
++.+|...|---..++...+..++..|.+.+.. ...+...-..++ .|...++...|..++....+
T Consensus 151 ~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~----~e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 151 EFEAAEKHLVLGTKESPEVLARMEYEWYKQDES----HTAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG----GGHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC----ccHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 999999998533333447787777677665431 122222333333 35566788888776655543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=86.65 E-value=10 Score=29.79 Aligned_cols=154 Identities=13% Similarity=0.026 Sum_probs=78.3
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 180 (415)
++..+-...+..+.+.|..+....+.+.+.++|...-...+.++.+.|+.+....+.+.+..++...-...+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~a------ 104 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVA------ 104 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHH------
Confidence 55666666667777777755555556666667766666667777777765444444444444444333333333
Q ss_pred CCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChh
Q 039757 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260 (415)
Q Consensus 181 ~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 260 (415)
+.+.++.+.. ..+..+... + +..+....+.++.+.|..+ +...+..+.. .++..
T Consensus 105 -------------------L~~~~~~~~~-~~L~~~l~d---~-~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-d~~~~ 158 (211)
T 3ltm_A 105 -------------------LGQIGDERAV-EPLIKALKD---E-DWFVRIAAAFALGEIGDER-AVEPLIKALK-DEDGW 158 (211)
T ss_dssp -------------------HHHHCCGGGH-HHHHHHTTC---S-SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-CSSHH
T ss_pred -------------------HHHhCcHHHH-HHHHHHHhC---C-CHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-CCCHH
Confidence 3333332222 222222221 2 5555555666666666543 3333333332 14555
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
.-...+.++.+.+. .++...+.++.+
T Consensus 159 vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 159 VRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 55555555555554 344444545444
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.57 E-value=4.5 Score=36.38 Aligned_cols=60 Identities=15% Similarity=-0.042 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhh--CC--ChhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVE--RK--NLVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
+...+...|.+.|+++.|.+.|.++... .+ -...+-.+++.+...+++..+...+.+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455667777777777777777776654 11 234466666667777777777777666543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.41 E-value=5.8 Score=26.84 Aligned_cols=79 Identities=8% Similarity=0.043 Sum_probs=60.6
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
...++|..+-+.+...|. ...+-.+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 366889999998877653 33333444567889999999999999999999999988754 47888888888886665
Q ss_pred CCC
Q 039757 162 CRN 164 (415)
Q Consensus 162 ~~~ 164 (415)
..+
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.15 E-value=3.8 Score=33.76 Aligned_cols=59 Identities=10% Similarity=-0.030 Sum_probs=46.5
Q ss_pred HHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 039757 198 PAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKN 258 (415)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 258 (415)
....+.|+++.+......-++. .|.|......|+..+|-.|+|++|.+-++...+..|+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3456778888888888877777 5778888888888888888888888888877776554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.03 E-value=6.2 Score=26.77 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=61.5
Q ss_pred CCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 82 SYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 82 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
...++|..+-+.+...|. ...+-.+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 366889999998877653 33333444567889999999999999999999999988765 47888888888887776
Q ss_pred CCC
Q 039757 162 CRN 164 (415)
Q Consensus 162 ~~~ 164 (415)
..+
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.86 E-value=14 Score=30.54 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=77.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchH
Q 039757 234 DTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYG 312 (415)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 312 (415)
....+.|++++|++....-.+..| |...-..|+..+|-.|++++|.+-++...+. .|+...-..+ |.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~----------yr 72 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQ----------LR 72 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHH----------HH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHH----------HH
Confidence 345678899999998887666644 7888899999999999999999999888774 4554432221 11
Q ss_pred HHHHHhHhcCCHHHHH-HHHhcCCC-C--CcCHHHHHHHHHHHh--hcCChHHHHHHHHHHHHcccC
Q 039757 313 CLVDMLGRAGRLEQAE-KIALGIPS-E--ITDVVVRRILLGACS--FHGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 313 ~li~~~~~~g~~~~A~-~~~~~~~~-~--~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~ 373 (415)
.+|.+ +... ++|..-.. . .....-...++.+.. ..|+.++|.++-..+.+.-+.
T Consensus 73 ~lI~a-------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 73 HLVKA-------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHH-------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHH-------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 12221 2222 23322111 1 112223445555543 569999999999999887655
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=84.99 E-value=12 Score=29.27 Aligned_cols=184 Identities=14% Similarity=0.033 Sum_probs=100.0
Q ss_pred CChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhH
Q 039757 117 GFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAV 196 (415)
Q Consensus 117 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~l 196 (415)
++.+....+.+.+..++...-...+..+.+.|..+..-.+.+.+..++... -...
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~v-------------------------r~~a 70 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWV-------------------------RRAA 70 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHH-------------------------HHHH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHH-------------------------HHHH
Confidence 344445555556666777777777777887777554455555554444333 3333
Q ss_pred HHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchH
Q 039757 197 LPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 276 (415)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 276 (415)
+.++...++.+....+. .+... + +..+....+.++.+.|+.+....+.+.+.. ++...-...+.++...|..+
T Consensus 71 ~~aL~~~~~~~~~~~L~-~~l~~---~-~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~ 143 (211)
T 3ltm_A 71 ADALGQIGDERAVEPLI-KALKD---E-DGWVRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFALGEIGDER 143 (211)
T ss_dssp HHHHHHHCCGGGHHHHH-HHTTC---S-SHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHhhCCHHHHHHHH-HHHcC---C-CHHHHHHHHHHHHHhCcHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCHH
Confidence 34444444433333333 33322 2 777788888888888876544444443333 67767667777777777644
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc--chHHHHHHhHhcCCH---HHHHHHHhcCCCC
Q 039757 277 AAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--HYGCLVDMLGRAGRL---EQAEKIALGIPSE 337 (415)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~~li~~~~~~g~~---~~A~~~~~~~~~~ 337 (415)
+...+..+.. .++...-...+.++...+. ....|...+ +.++. ..|.+.+..+...
T Consensus 144 -~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 144 -AVEPLIKALK---DEDGWVRQSAADALGEIGGERVRAAMEKLA-ETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHHHHHHHHHHH-HHCCHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHc---CCCHHHHHHHHHHHHHhCchhHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCC
Confidence 4455555554 3566665666666665554 233344333 33433 3455556655544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.92 E-value=8.4 Score=37.30 Aligned_cols=55 Identities=5% Similarity=-0.026 Sum_probs=41.9
Q ss_pred HHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC
Q 039757 75 IRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP 130 (415)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 130 (415)
...|...|+++.|+++-.+..... +-+-.+|-.|..+|...|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 455667788888888888877663 4456778888888888888888888888775
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=84.78 E-value=6.3 Score=29.76 Aligned_cols=51 Identities=8% Similarity=-0.052 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcccC--CCccHHHHHHHHHhcCchhhHHHHHHHHhhhcccc
Q 039757 358 EMGERVTRKVLEMERG--NGGDYVLMYNILAGVGRYVDAERLRRVMDERNALK 408 (415)
Q Consensus 358 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 408 (415)
+.+..+|..|...+.. -+..|...+..+...|++.+|.++++.-++.+..|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3477889999988877 45667888888999999999999999888877665
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=84.17 E-value=13 Score=28.85 Aligned_cols=170 Identities=12% Similarity=0.042 Sum_probs=93.9
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHh
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVK 146 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 146 (415)
|...-...+..+...+..+....+.+ +.. .++..+....+.++.+.|+.+....+.+.+..++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44555555555556555333333333 322 34555666667777777776666666666667777777777778888
Q ss_pred hCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCH
Q 039757 147 WGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDI 226 (415)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 226 (415)
.|+.+....+.+.+..++... -...+.++.+.++.+ +...+..+... + +.
T Consensus 103 ~~~~~~~~~L~~~l~d~~~~v-------------------------r~~a~~aL~~~~~~~-~~~~L~~~l~d---~-~~ 152 (201)
T 3ltj_A 103 IGDERAVEPLIKALKDEDWFV-------------------------RIAAAFALGEIGDER-AVEPLIKALKD---E-DG 152 (201)
T ss_dssp HCCGGGHHHHHHHTTCSSHHH-------------------------HHHHHHHHHHHTCGG-GHHHHHHHTTC---S-SH
T ss_pred hCcHHHHHHHHHHHcCCCHHH-------------------------HHHHHHHHHHhCCHH-HHHHHHHHHcC---C-CH
Confidence 777654444444444444333 333334444444433 33333333332 2 66
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHcc
Q 039757 227 RVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 272 (415)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 272 (415)
.+-...+.++...|.. ++...+..+... ++...-...+.++.+.
T Consensus 153 ~vr~~A~~aL~~~~~~-~~~~~L~~~l~d-~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 153 WVRQSAADALGEIGGE-RVRAAMEKLAET-GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHHHCSH-HHHHHHHHHHHH-CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 6777777777777764 455555555443 5655555555555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.36 E-value=8.6 Score=26.20 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=29.8
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHH
Q 039757 56 THSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVN 111 (415)
Q Consensus 56 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 111 (415)
....- | ++....+.+++|.+.+++..|.++|+.++.+. .+...+|..+++
T Consensus 38 ~~DlV--P---~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 38 GYDLV--P---EPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp TSSBC--C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred ccccC--C---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 44444 5 66677777777777777777777777665432 233444555544
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.96 E-value=8.8 Score=26.01 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 353 (415)
..++|..+-+-+...| + .-...+|+ +..+...|++++|..+.+... .||...|-+|.. .+
T Consensus 21 ~HqEA~tIAdwL~~~~---~-~E~v~lIR------------~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~r 80 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---Q-DEAARLIR------------ISSLANQGRYQEALAFAHGNP--WPALEPWFALCE--WH 80 (115)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHH------------HHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHH------------HHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--Hh
Confidence 5677777777776653 3 22223332 234778999999999988887 489999987755 47
Q ss_pred cCChHHHHHHHHHHHHcccC
Q 039757 354 HGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~ 373 (415)
.|-.+++...+..+...+.+
T Consensus 81 lGl~s~le~rL~~la~sg~p 100 (115)
T 2uwj_G 81 LGLGAALDRRLAGLGGSSDP 100 (115)
T ss_dssp TTCHHHHHHHHHHHHTCSSH
T ss_pred cccHHHHHHHHHHHHhCCCH
Confidence 78888888877777665544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.61 E-value=9.1 Score=25.97 Aligned_cols=80 Identities=13% Similarity=0.005 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 353 (415)
..++|..+-+-+...| + .-...+|+ +..+...|++++|..+.+... .||...|-+|.. .+
T Consensus 22 ~HqEA~tIAdwL~~~~---~-~E~v~lIR------------~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~r 81 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---E-EEAVQLIR------------LSSLMNRGDYASALQQGNKLA--YPDLEPWLALCE--YR 81 (116)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHH------------HHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHH------------HHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--Hh
Confidence 5677777777666643 3 22222232 234678899999998888877 388888877755 46
Q ss_pred cCChHHHHHHHHHHHHcccC
Q 039757 354 HGNVEMGERVTRKVLEMERG 373 (415)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~ 373 (415)
.|-.+++...+..+...+.+
T Consensus 82 lGl~s~le~rL~~la~sg~p 101 (116)
T 2p58_C 82 LGLGSALESRLNRLARSQDP 101 (116)
T ss_dssp HTCHHHHHHHHHHHTTCCCH
T ss_pred cccHHHHHHHHHHHHhCCCH
Confidence 67777777777666555443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=81.73 E-value=16 Score=28.25 Aligned_cols=169 Identities=12% Similarity=0.048 Sum_probs=98.3
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 180 (415)
+|..+....+..+.+.+..+....+.+.+..++...-...+.++.+.|+.+..-.+.+.+..++..
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~-------------- 91 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW-------------- 91 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH--------------
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH--------------
Confidence 455555556666666666555555666666677766667777777777655444455545444433
Q ss_pred CCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChh
Q 039757 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 260 (415)
Q Consensus 181 ~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 260 (415)
.-...+.++.+.++.+....+.. +... + +..+-...+.++.+.++.+. ...+..+... ++..
T Consensus 92 -----------vr~~a~~aL~~~~~~~~~~~L~~-~l~d---~-~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~d-~~~~ 153 (201)
T 3ltj_A 92 -----------VRQSAAVALGQIGDERAVEPLIK-ALKD---E-DWFVRIAAAFALGEIGDERA-VEPLIKALKD-EDGW 153 (201)
T ss_dssp -----------HHHHHHHHHHHHCCGGGHHHHHH-HTTC---S-SHHHHHHHHHHHHHHTCGGG-HHHHHHHTTC-SSHH
T ss_pred -----------HHHHHHHHHHHhCcHHHHHHHHH-HHcC---C-CHHHHHHHHHHHHHhCCHHH-HHHHHHHHcC-CCHH
Confidence 33344444444454433333333 3322 3 77777788888888887544 4444444332 6777
Q ss_pred hHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHc
Q 039757 261 SWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACS 305 (415)
Q Consensus 261 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 305 (415)
.-...+.++...|. +++...+..+... ++...-...+.++.
T Consensus 154 vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 154 VRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 77777778887776 4566666666653 45544444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 415 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.34 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.19 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.18 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.16 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.15 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.11 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.76 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.63 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.59 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.41 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.35 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.28 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.08 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.05 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.02 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.01 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.99 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.99 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.99 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.93 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.91 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.86 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.76 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.64 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.58 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.51 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.45 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.44 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.39 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.14 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.09 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.39 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.6 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.35 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.74 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.63 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.41 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.63 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.23 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.86 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.1e-22 Score=178.20 Aligned_cols=348 Identities=14% Similarity=0.047 Sum_probs=257.3
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHH
Q 039757 31 LLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALV 110 (415)
Q Consensus 31 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 110 (415)
+...+.+.|++++|++.|+++. ...+. +...+..+...+.+.|++++|...++.+.+.. +-+..++..+.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l---~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~ 74 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLW---RQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLG 74 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3456778899999999999998 55555 78889999999999999999999999998875 44677888999
Q ss_pred HHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhccCCCCc
Q 039757 111 NMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGILDGYTRMNRSNGA 184 (415)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a 184 (415)
.+|.+.|++++|+..+....+ .+...+..........+....+........ .................+....+
T Consensus 75 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 999999999999999988764 233344444444445555444444443332 11222222222222222211111
Q ss_pred c---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 185 S---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 185 ~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
. .+.+...+..+...+...|+++.|...+....+. .|.+...+..+...+...|++++|...+++....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 1 2334556667777788888999999988888876 5667888888888999999999999999888776
Q ss_pred C-CChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcC
Q 039757 256 R-KNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGI 334 (415)
Q Consensus 256 ~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (415)
. .+...+..+...+.+.|++++|...|++..+. .|+.... +..+...+...|++++|.+.++..
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~-------------~~~l~~~~~~~~~~~~A~~~~~~~ 297 (388)
T d1w3ba_ 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDA-------------YCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHH-------------HHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHhh
Confidence 4 45667888888888899999999999888774 4554321 223666788889999998888766
Q ss_pred CCC-CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 335 PSE-ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 335 ~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
... ..+...+..+...+...|++++|++.++++++..|.+..++..++.+|.+.|++++|...+++..+.+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred hccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 554 33566788888888888999999999999888888888888889999999999999999998877643
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.9e-21 Score=171.74 Aligned_cols=359 Identities=10% Similarity=0.011 Sum_probs=270.9
Q ss_pred CchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC
Q 039757 3 SSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS 82 (415)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 82 (415)
|+.+.|.+.+..+.+..+ -++.++..+...|.+.|++++|+..|+++. ...+. +..+|..+...+.+.|
T Consensus 13 G~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~------~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAI---KQNPL------LAEAYSNLGNVYKERG 81 (388)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHhhhhc
Confidence 678899999999987652 346788999999999999999999999998 66655 7889999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCchhhHHHHHHHHHcCCChhHHHHHhcccC---CCchhhHHHHHHHHHhhCCHHHHHHHHhh
Q 039757 83 YPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEE 159 (415)
Q Consensus 83 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (415)
++++|...+....+... .+..............+....+........ .................+....+...+..
T Consensus 82 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence 99999999999988753 334444444444444444444433333222 12333333444444445555555554444
Q ss_pred CCC---CChhHHHHHHHHHHhccCCCCcc---------CCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHH
Q 039757 160 MPC---RNVVSWTGILDGYTRMNRSNGAS---------TEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIR 227 (415)
Q Consensus 160 m~~---~~~~~~~~li~~~~~~~~~~~a~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (415)
... .+...+..+...+...|++++|. .+-+...+..+...+...|++++|...+...... .+....
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 238 (388)
T d1w3ba_ 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred hhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH--hhhHHH
Confidence 331 22334444445555555555444 2334566778888889999999999999999887 455788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHcc
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSH 306 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (415)
.+..+...+.+.|++++|...|+++.+..| +..++..+...+...|++++|...++..... .|+....
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~--------- 307 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADS--------- 307 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHH---------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchh---------
Confidence 899999999999999999999999888755 5678999999999999999999999998775 3443332
Q ss_pred CCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHH
Q 039757 307 GGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNIL 385 (415)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (415)
+..+...+.+.|++++|++.|++..+..| +..++..+..+|...|++++|.+.|+++++..|.++.+|..++.+|
T Consensus 308 ----~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 308 ----LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp ----HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 22366678999999999999998877656 5668899999999999999999999999999999999999999999
Q ss_pred HhcCc
Q 039757 386 AGVGR 390 (415)
Q Consensus 386 ~~~g~ 390 (415)
.+.|+
T Consensus 384 ~~~~D 388 (388)
T d1w3ba_ 384 KEMQD 388 (388)
T ss_dssp HHTCC
T ss_pred HHcCC
Confidence 88775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.6e-14 Score=122.35 Aligned_cols=227 Identities=11% Similarity=-0.025 Sum_probs=181.7
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHH
Q 039757 30 TLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTAL 109 (415)
Q Consensus 30 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 109 (415)
.....+.+.|++++|+..|+++. ...+. +..+|..+..++...|+++.|...++++.+.. +-+...+..+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al---~~~P~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 93 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAV---QQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMAL 93 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---HSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccc
Confidence 34667889999999999999999 66655 78899999999999999999999999998875 3467788888
Q ss_pred HHHHHcCCChhHHHHHhcccCC--Cch----------------hhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHH
Q 039757 110 VNMYVSLGFLKDSSKLFDELPE--RNL----------------VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGI 171 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~--~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l 171 (415)
...|...|++++|.+.++.... |+. ......+..+...+.+.+|.+.|++..+.++
T Consensus 94 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p------ 167 (323)
T d1fcha_ 94 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP------ 167 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST------
T ss_pred cccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh------
Confidence 9999999999999999987653 211 0111222334455666777777766542111
Q ss_pred HHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039757 172 LDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFED 251 (415)
Q Consensus 172 i~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (415)
...+...+..+...+...|++++|...++..... .|.+..++..+..+|...|++++|.+.|++
T Consensus 168 --------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 168 --------------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRR 231 (323)
T ss_dssp --------------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------cccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHH
Confidence 1344566777888889999999999999999887 576899999999999999999999999999
Q ss_pred hhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 252 ISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 252 ~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
..+..| +..+|..+..+|.+.|++++|+..|++..+.
T Consensus 232 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 232 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 988765 5678999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.7e-14 Score=125.20 Aligned_cols=230 Identities=12% Similarity=-0.040 Sum_probs=143.1
Q ss_pred HHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhh
Q 039757 139 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEK 218 (415)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (415)
.....+.+.|++++|++.|+++.+.+ +-+..++..+..++...|+++.|...+.+..+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~----------------------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 81 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD----------------------PKHMEAWQYLGTTQAENEQELLAISALRRCLE 81 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc
Confidence 34445566666666666666654322 12334455555556666666666666666665
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhh----------------HHHHHHHHHccCchHHHHHHH
Q 039757 219 RGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS----------------WTSIISGFAMHGMGKAAVENF 282 (415)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~li~~~~~~~~~~~A~~~~ 282 (415)
. .|.+...+..++.+|...|++++|.+.++++....|+... ....+..+...+...+|...|
T Consensus 82 ~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 82 L--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHH
T ss_pred c--ccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHH
Confidence 5 4556777777777777777777777777776554222110 111122333445566777777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHH
Q 039757 283 ERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGE 361 (415)
Q Consensus 283 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 361 (415)
.+.... .|+...... +..+...+...|++++|...++......| +..+|..+...+...|++++|+
T Consensus 160 ~~al~~--~p~~~~~~~-----------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 226 (323)
T d1fcha_ 160 LAAVRL--DPTSIDPDV-----------QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 226 (323)
T ss_dssp HHHHHH--STTSCCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHH--hhccccccc-----------chhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHH
Confidence 766653 233221111 12255567777888888887776554434 4557777777788888888888
Q ss_pred HHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 362 RVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+.++++++..|.++.++..++.+|.+.|++++|.+.|++..+..
T Consensus 227 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888888777777778888888888888888888887776643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=3.2e-10 Score=98.66 Aligned_cols=269 Identities=13% Similarity=-0.006 Sum_probs=170.5
Q ss_pred HHHHHcCCChhHHHHHhcccCC--Cc------hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCC
Q 039757 110 VNMYVSLGFLKDSSKLFDELPE--RN------LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRS 181 (415)
Q Consensus 110 i~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~ 181 (415)
...+...|++++|++++++..+ |+ ...++.+...+...|++++|.+.|++..+..... +.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-----------~~- 86 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-----------DV- 86 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-----------TC-
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-----------cc-
Confidence 3445556666666666655432 11 2245556666666777777777766654200000 00
Q ss_pred CCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhc----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 182 NGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKR----GF--NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 182 ~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
.......+..+...+...|++..+...+...... +. .+.....+..+...+...|+++.+...+......
T Consensus 87 ----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 162 (366)
T d1hz4a_ 87 ----WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 162 (366)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 0011122334445556666666666666555431 11 1112345667788899999999999999988765
Q ss_pred CC------ChhhHHHHHHHHHccCchHHHHHHHHHHHhcC--CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHH
Q 039757 256 RK------NLVSWTSIISGFAMHGMGKAAVENFERMQKVG--LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQA 327 (415)
Q Consensus 256 ~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A 327 (415)
.+ ....+..+...+...++...+...+.+..... ..........+ +..+...+...|+.++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a 232 (366)
T d1hz4a_ 163 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA----------NKVRVIYWQMTGDKAAA 232 (366)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH----------HHHHHHHHHHTTCHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH----------HHHHHHHHHhcccHHHH
Confidence 21 23345666777888899999988887765431 11222221111 22366678899999999
Q ss_pred HHHHhcCCCCCc-----CHHHHHHHHHHHhhcCChHHHHHHHHHHHHccc------CCCccHHHHHHHHHhcCchhhHHH
Q 039757 328 EKIALGIPSEIT-----DVVVRRILLGACSFHGNVEMGERVTRKVLEMER------GNGGDYVLMYNILAGVGRYVDAER 396 (415)
Q Consensus 328 ~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~ 396 (415)
...++......| ....+..+..++...|++++|...++++..... ....++..++.+|.+.|++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (366)
T d1hz4a_ 233 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312 (366)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999987765411 234566788899999999999999999875432 245678889999999999999999
Q ss_pred HHHHHhhh
Q 039757 397 LRRVMDER 404 (415)
Q Consensus 397 ~~~~m~~~ 404 (415)
.+++..+.
T Consensus 313 ~l~~Al~l 320 (366)
T d1hz4a_ 313 VLLDALKL 320 (366)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=3.8e-10 Score=98.14 Aligned_cols=303 Identities=13% Similarity=0.021 Sum_probs=209.1
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc----hhhHHHHHHHHHcCCChhHHHHHhcccCC-----Cc----hhh
Q 039757 70 TYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH----VYVNTALVNMYVSLGFLKDSSKLFDELPE-----RN----LVT 136 (415)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~ 136 (415)
........+...|++++|.++++...+.....+ ...+..+..+|...|++++|...|++..+ ++ ...
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 344456677899999999999999887532211 24566778889999999999999998764 22 335
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhh
Q 039757 137 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYG 216 (415)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 216 (415)
+..+...+...|++..+...+.+..... ...+. .........+..+...+...|+++.+...+...
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-----------~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 159 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLI-----------NEQHL---EQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 159 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------HHTTC---TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------Hhccc---chhhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence 6777788899999999999887754200 00000 001112234455667778899999999888887
Q ss_pred hhcCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----CC----ChhhHHHHHHHHHccCchHHHHHHHHHH
Q 039757 217 EKRGFN---AFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE----RK----NLVSWTSIISGFAMHGMGKAAVENFERM 285 (415)
Q Consensus 217 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m 285 (415)
...... ......+..+...+...++...+...+.+.... .. ....+..+...+...|++++|...+++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (366)
T d1hz4a_ 160 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 239 (366)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 764321 223455666777888899999999988876554 11 1234666777888999999999999987
Q ss_pred HhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCC------CCc-CHHHHHHHHHHHhhcCChH
Q 039757 286 QKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPS------EIT-DVVVRRILLGACSFHGNVE 358 (415)
Q Consensus 286 ~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~p-~~~~~~~l~~~~~~~~~~~ 358 (415)
.......+...... +..+...+...|++++|...++.... ..| ...++..+...|...|+++
T Consensus 240 ~~~~~~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 240 AKPEFANNHFLQGQ-----------WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp CCCCCTTCGGGHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHhccccchHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 66433333332222 22367779999999999999887642 123 3457788889999999999
Q ss_pred HHHHHHHHHHHcccC--C-------CccHHHHHHHHHhcCchhhHHHH
Q 039757 359 MGERVTRKVLEMERG--N-------GGDYVLMYNILAGVGRYVDAERL 397 (415)
Q Consensus 359 ~a~~~~~~~~~~~~~--~-------~~~~~~l~~~~~~~g~~~~A~~~ 397 (415)
+|.+.+++.++...+ . ......++..+...++.+++..-
T Consensus 309 ~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 309 DAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 999999999876543 1 12344566667777887777543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=5.4e-10 Score=95.58 Aligned_cols=233 Identities=9% Similarity=-0.003 Sum_probs=173.0
Q ss_pred ch-HHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcC-CCchHHHHHHHHHHcCCC
Q 039757 23 HH-TLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVISKVGFQ 100 (415)
Q Consensus 23 p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~ 100 (415)
|+ ..+|+.+-..+.+.+.+++|++++++++ ...+. +..+|+....++...| ++++|...++...+.. +
T Consensus 40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai---~lnP~------~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p 109 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAI---ELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-P 109 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHH---HHCCC------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-H
Confidence 44 4567888888899999999999999999 77766 8888999998888876 5899999999998875 4
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCC---CchhhHHHHHHHHHhhCCHHHHHHHHhhCCCC---ChhHHHHHHHH
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPE---RNLVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGILDG 174 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~ 174 (415)
-+..+|..+...+.+.|++++|+..++.+.+ .+...|..+...+.+.|++++|++.|+++.+. +...|+.+...
T Consensus 110 ~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~ 189 (315)
T d2h6fa1 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 189 (315)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence 5788899999999999999999999999875 46789999999999999999999999998753 33344444333
Q ss_pred HHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 039757 175 YTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISV 254 (415)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (415)
+.+.+.. ...+.+++|...+....+. .|.+...|+.+...+.. ...+++.+.++...+
T Consensus 190 l~~~~~~-------------------~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 190 ISNTTGY-------------------NDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHTTCS-------------------CSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred HHHcccc-------------------chhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 3333221 1233467788888888887 57788888888776554 446777788877766
Q ss_pred hCC---ChhhHHHHHHHHHcc--C-------chHHHHHHHHHHHh
Q 039757 255 ERK---NLVSWTSIISGFAMH--G-------MGKAAVENFERMQK 287 (415)
Q Consensus 255 ~~~---~~~~~~~li~~~~~~--~-------~~~~A~~~~~~m~~ 287 (415)
..| +...+..++..|... + .+++|..++..+..
T Consensus 248 l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~ 292 (315)
T d2h6fa1 248 LQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK 292 (315)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred hCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 544 344566666666432 2 34455555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=5.1e-10 Score=95.76 Aligned_cols=213 Identities=9% Similarity=-0.021 Sum_probs=158.5
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcC-ChhHHHHH
Q 039757 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNG-AVRNCQLI 212 (415)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~-~~~~a~~~ 212 (415)
...|+.+...+.+.+.+++|+++++++.+-+ +-+...|+....++...| ++++|...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln----------------------P~~~~a~~~r~~~l~~l~~~~~eal~~ 100 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN----------------------AANYTVWHFRRVLLKSLQKDLHEEMNY 100 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC----------------------CCChHHHHHHHHHHHHhCcCHHHHHHH
Confidence 3467777788888999999999999987533 223445566666666665 58999999
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCC
Q 039757 213 HGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLK 291 (415)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 291 (415)
++...+. .|.+..+|..+..++.+.|++++|++.++++.+..| +...|..+...+...|++++|+..++++.+. .
T Consensus 101 ~~~al~~--~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~ 176 (315)
T d2h6fa1 101 ITAIIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--D 176 (315)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--C
T ss_pred HHHHHHH--HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--C
Confidence 9999887 677999999999999999999999999999988855 6888999999999999999999999999885 4
Q ss_pred CChhh-HHHHHHHHccCCcchHHHHHHhHhc------CCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHH
Q 039757 292 PNRVT-FLSVLNACSHGGLHYGCLVDMLGRA------GRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERV 363 (415)
Q Consensus 292 p~~~~-~~~ll~~~~~~~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 363 (415)
|+... |+. +...+.+. +.+++|++.+.......| +...|..+...+. ....+++.+.
T Consensus 177 p~n~~a~~~--------------r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~ 241 (315)
T d2h6fa1 177 VRNNSVWNQ--------------RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNL 241 (315)
T ss_dssp TTCHHHHHH--------------HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHH
T ss_pred CccHHHHHH--------------HHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHH
Confidence 54433 322 22223333 346788888876655545 5566766655544 4456888899
Q ss_pred HHHHHHcccCC--CccHHHHHHHHHh
Q 039757 364 TRKVLEMERGN--GGDYVLMYNILAG 387 (415)
Q Consensus 364 ~~~~~~~~~~~--~~~~~~l~~~~~~ 387 (415)
++...+..+.. ...+..++..|..
T Consensus 242 ~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 242 LNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 99998887763 3445567777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.7e-10 Score=95.87 Aligned_cols=199 Identities=10% Similarity=-0.089 Sum_probs=134.4
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
..++..+..++.+.|++++|...|++.++. .|.++.+|+.+..+|.+.|++++|.+.|+++....| +..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHH
Confidence 346667788889999999999999999987 688999999999999999999999999999998866 46779999999
Q ss_pred HHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHH
Q 039757 269 FAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILL 348 (415)
Q Consensus 269 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 348 (415)
|...|++++|...|++..+. .|+....... +...+.+.+..+.+..+........+....+. ++
T Consensus 115 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 178 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLW-------------LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IV 178 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH-------------HHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HH
T ss_pred HHHHhhHHHHHHHHHHHHhh--ccccHHHHHH-------------HHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HH
Confidence 99999999999999998875 4543332221 12223444444443333322221111111121 12
Q ss_pred HHHhh----cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 349 GACSF----HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 349 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
..+.. .+..+.+...+.......+....+|..++..|...|++++|...+++..+.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 179 EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 22211 22233333333333333344456777888888888999999988888776554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=4.1e-09 Score=87.32 Aligned_cols=205 Identities=8% Similarity=-0.171 Sum_probs=144.2
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHH
Q 039757 134 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIH 213 (415)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 213 (415)
..+|..+...|.+.|++++|++.|++..+-+ +-+..++..+..++...|++++|...|
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~----------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR----------------------PDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC----------------------CCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 3467788889999999999999999886422 235567788888889999999999999
Q ss_pred hhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCC
Q 039757 214 GYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKP 292 (415)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 292 (415)
+++.+. .|.+..++..+..+|...|++++|.+.|++..+..| +......+..++.+.+..+.+..+....... .+
T Consensus 95 ~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 170 (259)
T d1xnfa_ 95 DSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DK 170 (259)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CC
T ss_pred hHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--ch
Confidence 999997 577888999999999999999999999999988755 4444444455556666666666666666553 22
Q ss_pred ChhhHHHHHHHHccCCcchHHHHHHhHh----cCCHHHHHHHHhcCCCCCcC-HHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039757 293 NRVTFLSVLNACSHGGLHYGCLVDMLGR----AGRLEQAEKIALGIPSEITD-VVVRRILLGACSFHGNVEMGERVTRKV 367 (415)
Q Consensus 293 ~~~~~~~ll~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 367 (415)
+...+.. +..+.. .+..+.+...+.......|+ ..+|..+...+...|++++|.+.|++.
T Consensus 171 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (259)
T d1xnfa_ 171 EQWGWNI---------------VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 235 (259)
T ss_dssp CSTHHHH---------------HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhhH---------------HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2222221 111221 12233333333221111232 346777889999999999999999999
Q ss_pred HHcccCCCccHH
Q 039757 368 LEMERGNGGDYV 379 (415)
Q Consensus 368 ~~~~~~~~~~~~ 379 (415)
++..|.+...|.
T Consensus 236 l~~~p~~~~~~~ 247 (259)
T d1xnfa_ 236 VANNVHNFVEHR 247 (259)
T ss_dssp HTTCCTTCHHHH
T ss_pred HHcCCCCHHHHH
Confidence 998887654444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=1.4e-09 Score=94.07 Aligned_cols=259 Identities=9% Similarity=0.042 Sum_probs=189.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHh----------cCCCchHHHHHHHHHH
Q 039757 27 LFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVT----------LSYPNLGTQLHAVISK 96 (415)
Q Consensus 27 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~ 96 (415)
.++.++......+..++|++++++.. ...+. +...|+..-..+.. .|.++.|+.+++...+
T Consensus 31 ~~~~~~~~~~~~~~~~~al~~~~~~l---~~~P~------~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~ 101 (334)
T d1dcea1 31 ATQAVFQKRQAGELDESVLELTSQIL---GANPD------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 101 (334)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHH---HHCCC------cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 44455554444455689999999998 55544 55566544433332 2346789999999887
Q ss_pred cCCCCchhhHHHHHHHHHcCC--ChhHHHHHhcccCC---CchhhHH-HHHHHHHhhCCHHHHHHHHhhCCC---CChhH
Q 039757 97 VGFQSHVYVNTALVNMYVSLG--FLKDSSKLFDELPE---RNLVTWN-VMITGLVKWGELEYARSLFEEMPC---RNVVS 167 (415)
Q Consensus 97 ~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~---~~~~~ 167 (415)
.. +-+...|..+..++...+ ++++|...++.+.+ ++...+. .....+...|.+++|+..++...+ .+...
T Consensus 102 ~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a 180 (334)
T d1dcea1 102 VN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180 (334)
T ss_dssp HC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred hC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHH
Confidence 65 446677777777777765 47899999998764 3455554 444677788999999999999885 35677
Q ss_pred HHHHHHHHHhccCCCCccCCCch-----HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCH
Q 039757 168 WTGILDGYTRMNRSNGASTEPSE-----ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCI 242 (415)
Q Consensus 168 ~~~li~~~~~~~~~~~a~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 242 (415)
|+.+...+.+.|++++|...... .....+...+...+..+.+...+...... .|.+...+..++..+...|+.
T Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~ 258 (334)
T d1dcea1 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSE 258 (334)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhH
Confidence 88899999999999999822211 11223344456677778888888887776 455777777888889999999
Q ss_pred HHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHH
Q 039757 243 FSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLS 299 (415)
Q Consensus 243 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 299 (415)
++|...+.+.....| +..++..+..+|...|++++|.+.+++..+. .|+...|-.
T Consensus 259 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~ 314 (334)
T d1dcea1 259 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLD 314 (334)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHH
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHH
Confidence 999999999888654 4567888999999999999999999999884 787665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=2e-10 Score=99.43 Aligned_cols=271 Identities=7% Similarity=-0.130 Sum_probs=185.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHcCCCCch-hhHHHHHHH---HH-------cCCChhHHHHHhcccCC--C-chhhHH
Q 039757 73 FLIRTCVTLSYPNLGTQLHAVISKVGFQSHV-YVNTALVNM---YV-------SLGFLKDSSKLFDELPE--R-NLVTWN 138 (415)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~---~~-------~~g~~~~a~~~~~~~~~--~-~~~~~~ 138 (415)
.++......+..++|.++++.+++.. |+. ..|+..-.. +. ..|++++|+.+++...+ | +...|.
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~ 111 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 111 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 33333333344579999999998764 543 344433222 22 23447788888888764 3 556677
Q ss_pred HHHHHHHhhC--CHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHH-HhHHHHHhhcCChhHHHHHHhh
Q 039757 139 VMITGLVKWG--ELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITI-LAVLPAIWQNGAVRNCQLIHGY 215 (415)
Q Consensus 139 ~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~ 215 (415)
.+..++...+ ++++|...++++.+.+ +.+...+ ......+...+..+.|...++.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~ 169 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEAD----------------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDS 169 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhC----------------------chhhhhhhhHHHHHHHhccccHHHHHHHHH
Confidence 7777766655 4789999888876433 1223333 2334556678889999999999
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChh
Q 039757 216 GEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRV 295 (415)
Q Consensus 216 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 295 (415)
+.+. .|.+...|+.+..++...|++++|...+.......|+. ......+...+..+++...+...... .|+..
T Consensus 170 ~i~~--~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~ 242 (334)
T d1dcea1 170 LITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE---LELVQNAFFTDPNDQSAWFYHRWLLG--RAEPL 242 (334)
T ss_dssp TTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS--CCCCS
T ss_pred HHHc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH---HHHHHHHHHhcchhHHHHHHHHHHHh--Ccchh
Confidence 9887 57789999999999999999988877776655532221 12233345556666777777776654 23322
Q ss_pred hHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC
Q 039757 296 TFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGN 374 (415)
Q Consensus 296 ~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (415)
. .+..+...+...|+.++|...+.+.....| +..++..+...+...|++++|.+.++++.+.+|.+
T Consensus 243 ~-------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~ 309 (334)
T d1dcea1 243 F-------------RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 309 (334)
T ss_dssp S-------------SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred h-------------HHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence 1 122355567788999999999988877745 45588889999999999999999999999999987
Q ss_pred CccHHHHHHHHHh
Q 039757 375 GGDYVLMYNILAG 387 (415)
Q Consensus 375 ~~~~~~l~~~~~~ 387 (415)
...|..|...+.-
T Consensus 310 ~~y~~~L~~~~~~ 322 (334)
T d1dcea1 310 AAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 7777777666653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=9.8e-09 Score=87.42 Aligned_cols=215 Identities=9% Similarity=0.002 Sum_probs=161.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhc--------------CCCchHHHHHHHHHHcCCCCchhhH
Q 039757 41 PKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTL--------------SYPNLGTQLHAVISKVGFQSHVYVN 106 (415)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~g~~~~~~~~ 106 (415)
.+++..+|+++. ..-+. ++..|..-+..+-.. +..+.+..+|++..+...+.+...|
T Consensus 32 ~~Rv~~vyerAl---~~~~~------~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~ 102 (308)
T d2onda1 32 TKRVMFAYEQCL---LVLGH------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHH---HHHTT------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHH---HHCCC------CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHH
Confidence 355677888887 33333 556666555544322 2346788899998876555566778
Q ss_pred HHHHHHHHcCCChhHHHHHhcccCC--C-c-hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCC
Q 039757 107 TALVNMYVSLGFLKDSSKLFDELPE--R-N-LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSN 182 (415)
Q Consensus 107 ~~li~~~~~~g~~~~a~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 182 (415)
...+..+.+.|+++.|..+|+.+.+ | + ...|...+..+.+.|++++|.++|+++.+..+
T Consensus 103 ~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~----------------- 165 (308)
T d2onda1 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR----------------- 165 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-----------------
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----------------
Confidence 8889999999999999999998764 3 3 34789999999999999999999999864321
Q ss_pred CccCCCchHHHHhHHHH-HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC----
Q 039757 183 GASTEPSEITILAVLPA-IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK---- 257 (415)
Q Consensus 183 ~a~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---- 257 (415)
.+...+...... +...|+.+.|..+|+.+.+. .|.+...+...++.+...|+.+.|..+|++.....|
T Consensus 166 -----~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 166 -----TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp -----CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred -----CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 122222222222 23467899999999999987 577899999999999999999999999999877522
Q ss_pred -ChhhHHHHHHHHHccCchHHHHHHHHHHHhc
Q 039757 258 -NLVSWTSIISGFAMHGMGKAAVENFERMQKV 288 (415)
Q Consensus 258 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 288 (415)
....|...+.--...|+.+.+..+++++.+.
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2346888888878899999999999998764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=1.7e-08 Score=85.95 Aligned_cols=186 Identities=6% Similarity=-0.121 Sum_probs=144.1
Q ss_pred CChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-C-hhhHHHHHHHHHccCchHHHHHH
Q 039757 204 GAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-N-LVSWTSIISGFAMHGMGKAAVEN 281 (415)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-~~~~~~li~~~~~~~~~~~A~~~ 281 (415)
+..+.+..+|+..++.. .|.+...+...+..+...|+++.|..+|+++....| + ...|...+..+.+.|+.+.|..+
T Consensus 78 ~~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 78 LFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 45677888888888753 465788888899999999999999999999887654 3 34688899999999999999999
Q ss_pred HHHHHhcCCCCChhh-HHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHH
Q 039757 282 FERMQKVGLKPNRVT-FLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEM 359 (415)
Q Consensus 282 ~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 359 (415)
|+++.+.+ |+... |... ....+...|+.+.|.++|+.+....| +...|...+..+...|+++.
T Consensus 157 ~~~al~~~--~~~~~~~~~~-------------a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~ 221 (308)
T d2onda1 157 FKKAREDA--RTRHHVYVTA-------------ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 221 (308)
T ss_dssp HHHHHTST--TCCTHHHHHH-------------HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHhC--CCcHHHHHHH-------------HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHH
Confidence 99988753 33222 2110 11123446889999999988876644 56789999999999999999
Q ss_pred HHHHHHHHHHcccCCC----ccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 360 GERVTRKVLEMERGNG----GDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 360 a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
|..+|++.....+.++ ..|...+..-...|+.+.+..+.+++.+.-
T Consensus 222 aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999998776543 367777877788899999999998886643
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=7e-07 Score=74.88 Aligned_cols=206 Identities=10% Similarity=-0.076 Sum_probs=136.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHhcccCC-----Cc----hhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 039757 105 VNTALVNMYVSLGFLKDSSKLFDELPE-----RN----LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGY 175 (415)
Q Consensus 105 ~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 175 (415)
.|......|...|++++|...|++..+ .+ ..+|..+..+|.+.|++++|.+.+++..+ .+
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~-----------~~ 107 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ-----------IF 107 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH-----------Hh
Confidence 356667778888999999998887753 12 34788889999999999999998887642 11
Q ss_pred HhccCCCCccCCCchHHHHhHHHHHh-hcCChhHHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039757 176 TRMNRSNGASTEPSEITILAVLPAIW-QNGAVRNCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFE 250 (415)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 250 (415)
...|+ ......++..+...+. ..|+++.|...+.+..+. +..+....++..+...|...|++++|.+.|+
T Consensus 108 ~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~ 182 (290)
T d1qqea_ 108 THRGQ-----FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182 (290)
T ss_dssp HHTTC-----HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhccc-----chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHH
Confidence 11111 1112334555566664 469999999999887642 2122235568889999999999999999999
Q ss_pred HhhhhCCCh--------hhHHHHHHHHHccCchHHHHHHHHHHHhcCCC-CChhhHHHHHHHHccCCcchHHHHHHhHh-
Q 039757 251 DISVERKNL--------VSWTSIISGFAMHGMGKAAVENFERMQKVGLK-PNRVTFLSVLNACSHGGLHYGCLVDMLGR- 320 (415)
Q Consensus 251 ~~~~~~~~~--------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~li~~~~~- 320 (415)
++....++. ..+...+.++...|+++.|...+++..+.... ++..-+.. ...++.++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~-----------l~~l~~a~~~~ 251 (290)
T d1qqea_ 183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF-----------LKSLIDAVNEG 251 (290)
T ss_dssp HHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH-----------HHHHHHHHHTT
T ss_pred HHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHH-----------HHHHHHHHHhc
Confidence 987763221 12445566778899999999999998775211 12111211 1224555544
Q ss_pred -cCCHHHHHHHHhcCCCC
Q 039757 321 -AGRLEQAEKIALGIPSE 337 (415)
Q Consensus 321 -~g~~~~A~~~~~~~~~~ 337 (415)
.+.+++|+..|+++...
T Consensus 252 d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 252 DSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp CTTTHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 45689999999887765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.3e-06 Score=68.18 Aligned_cols=127 Identities=12% Similarity=-0.053 Sum_probs=103.9
Q ss_pred HHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcC
Q 039757 141 ITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220 (415)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 220 (415)
...+...|++++|++.|+++.. ++..++..+..++...|++++|...|++.++.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~-------------------------~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l- 65 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQD-------------------------PHSRICFNIGCMYTILKNMTEAEKAFTRSINR- 65 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSS-------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHhcCC-------------------------CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-
Confidence 5567889999999999998744 34556777888889999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCC----------------hhhHHHHHHHHHccCchHHHHHHHH
Q 039757 221 FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKN----------------LVSWTSIISGFAMHGMGKAAVENFE 283 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~----------------~~~~~~li~~~~~~~~~~~A~~~~~ 283 (415)
.|.....|..+..+|.+.|++++|.+.|++.... +.+ ..++..+..++.+.|++++|.+.|.
T Consensus 66 -dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~ 144 (192)
T d1hh8a_ 66 -DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 144 (192)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6879999999999999999999999999987653 111 2345667888999999999999999
Q ss_pred HHHhcCCCCCh
Q 039757 284 RMQKVGLKPNR 294 (415)
Q Consensus 284 ~m~~~g~~p~~ 294 (415)
........|+.
T Consensus 145 ~A~~~~~~~~~ 155 (192)
T d1hh8a_ 145 LATSMKSEPRH 155 (192)
T ss_dssp HHHTTCCSGGG
T ss_pred HHHhcCCCcch
Confidence 98876444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=1.8e-07 Score=78.68 Aligned_cols=201 Identities=6% Similarity=-0.136 Sum_probs=134.4
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCC----hhh
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKR----GFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE---RKN----LVS 261 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~ 261 (415)
|......|...+++++|...|.+..+. +..+....+|..+..+|.+.|++++|.+.+++.... ..+ ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 334455677788888888888877763 112223568899999999999999999999987655 122 345
Q ss_pred HHHHHHHHH-ccCchHHHHHHHHHHHhcC-CCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc
Q 039757 262 WTSIISGFA-MHGMGKAAVENFERMQKVG-LKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339 (415)
Q Consensus 262 ~~~li~~~~-~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (415)
+..+...|. ..|++++|...+++..+.- ...+...... ++..+...|...|++++|...|+++....|
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~----------~~~~la~~~~~~g~y~~A~~~~~~~~~~~~ 189 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK----------CFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhh----------HHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence 666777774 4699999999999876421 0112222211 244588889999999999999987544311
Q ss_pred -------CH-HHHHHHHHHHhhcCChHHHHHHHHHHHHcccC--CC---ccHHHHHHHHHh--cCchhhHHHHHHHHhh
Q 039757 340 -------DV-VVRRILLGACSFHGNVEMGERVTRKVLEMERG--NG---GDYVLMYNILAG--VGRYVDAERLRRVMDE 403 (415)
Q Consensus 340 -------~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~---~~~~~l~~~~~~--~g~~~~A~~~~~~m~~ 403 (415)
.. ..+...+..+...|+++.|...+++..+..|. +. .....++.++.. .+++++|...|+++.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred cchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 11 12344555677889999999999999988765 22 234456666654 3568888887765544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=9.2e-07 Score=62.77 Aligned_cols=103 Identities=11% Similarity=-0.060 Sum_probs=90.7
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHcc
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMH 272 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~ 272 (415)
..-...+...|++++|...|.+.++. .|.+...|..+..+|...|++++|+..+++.....| +...|..+..++...
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence 34456678899999999999999988 688999999999999999999999999999988755 678899999999999
Q ss_pred CchHHHHHHHHHHHhcCCCCChhhHHHH
Q 039757 273 GMGKAAVENFERMQKVGLKPNRVTFLSV 300 (415)
Q Consensus 273 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (415)
|++++|+..|++..+. .|+...+...
T Consensus 85 ~~~~~A~~~~~~a~~~--~p~~~~~~~~ 110 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKH--EANNPQLKEG 110 (117)
T ss_dssp TCHHHHHHHHHHHHTT--CTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999999974 7877665443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=6.8e-07 Score=69.75 Aligned_cols=126 Identities=10% Similarity=-0.061 Sum_probs=81.2
Q ss_pred HHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccCCCCccCCCch
Q 039757 111 NMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNRSNGASTEPSE 190 (415)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 190 (415)
..+...|+++.|++.|+++..++..+|..+..+|.+.|++++|++.|++..+.| +...
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld----------------------p~~~ 70 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----------------------KHLA 70 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------TTCH
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh----------------------hhhh
Confidence 344566777777777776666666666667777777777777777776665322 2234
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcC--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRG--------------FNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVER 256 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 256 (415)
..|..+..++.+.|++++|...|++..... .......++..+..++.+.|++++|.+.|.......
T Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 71 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 445555555566666666666665554320 011123566778889999999999999999888765
Q ss_pred CC
Q 039757 257 KN 258 (415)
Q Consensus 257 ~~ 258 (415)
|+
T Consensus 151 ~~ 152 (192)
T d1hh8a_ 151 SE 152 (192)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.58 E-value=6.5e-08 Score=68.33 Aligned_cols=88 Identities=7% Similarity=-0.187 Sum_probs=80.9
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
+...+.+.|++++|...|++.....| +..+|..+..++.+.|++++|+..++++++.+|.+..++..++.+|...|+++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 45568899999999999998876656 57799999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 039757 393 DAERLRRVM 401 (415)
Q Consensus 393 ~A~~~~~~m 401 (415)
+|.+.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=9.9e-08 Score=68.00 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=83.9
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
-...+.+.|++++|+..|+......| +...|..+..++...|++++|+..++++++.+|.++..|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 44568899999999999998876645 67789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcc
Q 039757 393 DAERLRRVMDERNA 406 (415)
Q Consensus 393 ~A~~~~~~m~~~~~ 406 (415)
+|...+++..+...
T Consensus 89 ~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 89 EAKRTYEEGLKHEA 102 (117)
T ss_dssp HHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999887554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=1.4e-07 Score=74.52 Aligned_cols=94 Identities=10% Similarity=-0.134 Sum_probs=84.4
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
....|.+.|++++|+..|++.....| +...|..+..+|.+.|++++|+..|+++++.+|.+..+|..++.+|.+.|+++
T Consensus 10 ~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~ 89 (201)
T d2c2la1 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD 89 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 56779999999999999987665534 67789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhccc
Q 039757 393 DAERLRRVMDERNAL 407 (415)
Q Consensus 393 ~A~~~~~~m~~~~~~ 407 (415)
+|...+++..+....
T Consensus 90 ~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 90 EAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999998775543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.6e-06 Score=65.29 Aligned_cols=102 Identities=15% Similarity=0.052 Sum_probs=89.3
Q ss_pred HHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHc
Q 039757 193 ILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM 271 (415)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 271 (415)
+......+.+.|++++|...|++..+. .|.+...|..+..+|...|++++|...|+++.+..| +...|..+..+|..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 344556788999999999999999998 688999999999999999999999999999988765 56789999999999
Q ss_pred cCchHHHHHHHHHHHhcCCCCChhhHH
Q 039757 272 HGMGKAAVENFERMQKVGLKPNRVTFL 298 (415)
Q Consensus 272 ~~~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (415)
.|++++|...+++.... .|+.....
T Consensus 91 ~g~~~eA~~~~~~a~~~--~p~~~~~~ 115 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKV--KPHDKDAK 115 (159)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHH
Confidence 99999999999999885 56655433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=1e-06 Score=69.34 Aligned_cols=98 Identities=12% Similarity=-0.056 Sum_probs=89.2
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHH
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSII 266 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 266 (415)
|+...+......+.+.|+++.|...|...++. .|.++.+|..+..+|.+.|++++|+..|++.....| ++.+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 55666777888999999999999999999988 688999999999999999999999999999998766 577899999
Q ss_pred HHHHccCchHHHHHHHHHHHh
Q 039757 267 SGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~m~~ 287 (415)
.+|...|++++|+..|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=4.4e-07 Score=68.58 Aligned_cols=92 Identities=11% Similarity=-0.061 Sum_probs=82.0
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYV 392 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 392 (415)
....|.+.|++++|+..|++.....| +...|..+..+|...|++++|+..|+++++.+|.+..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 34458899999999999988776645 66789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhc
Q 039757 393 DAERLRRVMDERN 405 (415)
Q Consensus 393 ~A~~~~~~m~~~~ 405 (415)
+|...+++....+
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.37 E-value=2e-06 Score=60.44 Aligned_cols=90 Identities=8% Similarity=-0.070 Sum_probs=81.4
Q ss_pred hHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccC
Q 039757 195 AVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHG 273 (415)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 273 (415)
.....+.+.|++++|...|++.++. .|.++.+|..+..++.+.|++++|+..|++.....| +...|..+..+|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 3456678899999999999999998 677899999999999999999999999999988866 5788999999999999
Q ss_pred chHHHHHHHHHHH
Q 039757 274 MGKAAVENFERMQ 286 (415)
Q Consensus 274 ~~~~A~~~~~~m~ 286 (415)
++++|.+.+++..
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998853
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=2.5e-06 Score=60.69 Aligned_cols=105 Identities=9% Similarity=-0.040 Sum_probs=87.1
Q ss_pred HhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhhCCCh---hhHHHHHH
Q 039757 194 LAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGC---IFSALKLFEDISVERKNL---VSWTSIIS 267 (415)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~---~~~~~li~ 267 (415)
..++..+...+++++|++.|+..... .|.++.++..+..++.+.++ +++|+.+|+++....|+. .++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45777888899999999999999998 57799999999999988665 456999999988764433 36888999
Q ss_pred HHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 039757 268 GFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLN 302 (415)
Q Consensus 268 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 302 (415)
+|.+.|++++|...|+++.+. .|+......+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQT--EPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence 999999999999999999984 788776555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.29 E-value=0.00011 Score=60.13 Aligned_cols=209 Identities=8% Similarity=-0.097 Sum_probs=137.1
Q ss_pred hHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCChhhHHHH
Q 039757 190 EITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSI 265 (415)
Q Consensus 190 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l 265 (415)
+..+..+...+.+.+++++|...|++..+.| +...+..|...|.. ..+...|...+...... -+......+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-~~~~a~~~l 76 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-NYSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-cccchhhcc
Confidence 4455666677778899999999999998875 66677778888776 56888898888887663 234444444
Q ss_pred HHHHHc----cCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCc--------------------chHHHHHHhHh-
Q 039757 266 ISGFAM----HGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGL--------------------HYGCLVDMLGR- 320 (415)
Q Consensus 266 i~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--------------------~~~~li~~~~~- 320 (415)
...+.. ..+.+.|...+++....|.......+. .......... .+..|...|..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG-GIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhc-ccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccC
Confidence 444432 457788888888877664322221111 1111111111 33344444443
Q ss_pred ---cCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh----cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh----cC
Q 039757 321 ---AGRLEQAEKIALGIPSEITDVVVRRILLGACSF----HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG----VG 389 (415)
Q Consensus 321 ---~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 389 (415)
..+...+...++...+. .+......+...|.. .++++.|+.+|++..+.+ ++..+..|+.+|.+ ..
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~-g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSC
T ss_pred CCcccccccchhhhhccccc-cccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCcc
Confidence 44555666666655443 456666666655554 568999999999998875 56778888888875 34
Q ss_pred chhhHHHHHHHHhhhccc
Q 039757 390 RYVDAERLRRVMDERNAL 407 (415)
Q Consensus 390 ~~~~A~~~~~~m~~~~~~ 407 (415)
+.++|.++|++..+.|..
T Consensus 233 n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CSTTHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHCcCH
Confidence 899999999999888754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.5e-06 Score=64.98 Aligned_cols=84 Identities=11% Similarity=-0.116 Sum_probs=70.5
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
|..+...|.+.|++++|+..++......| ++.+|..+..+|...|++++|+..|+++.+.+|.+..+...+..+..+.+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 34467779999999999999988776545 77799999999999999999999999999999999888888887776655
Q ss_pred chhhH
Q 039757 390 RYVDA 394 (415)
Q Consensus 390 ~~~~A 394 (415)
...+.
T Consensus 145 ~~~~~ 149 (170)
T d1p5qa1 145 RQLAR 149 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=6e-06 Score=58.66 Aligned_cols=102 Identities=11% Similarity=-0.036 Sum_probs=57.3
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHccCCcchHHHHHHhHhcC---CHHHHHHHHhcCCCCCc
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNR-VTFLSVLNACSHGGLHYGCLVDMLGRAG---RLEQAEKIALGIPSEIT 339 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~p 339 (415)
.++..+...+++++|.+.|++.... .|+. .++.. +..++.+.+ ++++|+.+++++....|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n--------------~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~ 67 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFE--------------YAWCLVRTRYNDDIRKGIVLLEELLPKGS 67 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHH--------------HHHHHTTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHH--------------HHHHHHHhcchHHHHHHHHHHHHHHhccC
Confidence 3455555566666666666666553 2332 22111 333343322 33456666666554422
Q ss_pred C---HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHH
Q 039757 340 D---VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLM 381 (415)
Q Consensus 340 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 381 (415)
+ ..++..+..+|.+.|++++|++.|+++++.+|.+..+...+
T Consensus 68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 2 23566677777788888888888888888777766554433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=0.0016 Score=54.44 Aligned_cols=287 Identities=10% Similarity=-0.012 Sum_probs=154.3
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc
Q 039757 23 HHTLLFNTLLHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH 102 (415)
Q Consensus 23 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 102 (415)
||..--..+..-|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++... -+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----------------d~~rl~~~~v~l~~~~~avd~~~k~------~~ 68 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------------NFGRLASTLVHLGEYQAAVDGARKA------NS 68 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----------------CHHHHHHHHHTTTCHHHHHHHHHHH------TC
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----------------CHHHHHHHHHhhccHHHHHHHHHHc------CC
Confidence 444555566777888899999988887764 2566778888888888877766533 24
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcc
Q 039757 103 VYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGILDGYTRMN 179 (415)
Q Consensus 103 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~ 179 (415)
..+|..+...+.+......|.- .......+......++..|-..|.+++...+++... ..+...++.++..|++.+
T Consensus 69 ~~~~k~~~~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 69 TRTWKEVCFACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 5577778888887766655432 222222344445678888888899999988888654 234445556666665421
Q ss_pred CCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCh
Q 039757 180 RSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 259 (415)
Q Consensus 180 ~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 259 (415)
+......+......=+..++.++.+ ....|..++-.|.+.|++++|..+.-. ..+++
T Consensus 148 ----------~~kl~e~l~~~s~~y~~~k~~~~c~----------~~~l~~elv~Ly~~~~~~~~A~~~~i~---~~~~~ 204 (336)
T d1b89a_ 148 ----------PQKMREHLELFWSRVNIPKVLRAAE----------QAHLWAELVFLYDKYEEYDNAIITMMN---HPTDA 204 (336)
T ss_dssp ----------HHHHHHHHHHHSTTSCHHHHHHHHH----------TTTCHHHHHHHHHHTTCHHHHHHHHHH---STTTT
T ss_pred ----------hHHHHHHHHhccccCCHHHHHHHHH----------HcCChHHHHHHHHhcCCHHHHHHHHHH---cchhh
Confidence 1111111111111112222322221 112234466667777777776665432 22455
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (415)
.-....+..+.+..+++...++.....+. .|+ ..+.++......- .-..++..+.+.+++......++..... .
T Consensus 205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~-d~~r~V~~~~k~~~l~li~p~Le~v~~~-n 278 (336)
T d1b89a_ 205 WKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRL-DHTRAVNYFSKVKQLPLVKPYLRSVQNH-N 278 (336)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGC-CHHHHHHHHHHTTCTTTTHHHHHHHHTT-C
T ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCC-CHHHHHHHHHhcCCcHHHHHHHHHHHHc-C
Confidence 55666777788888888777777665553 343 3344443322211 1233555555566666555555554443 2
Q ss_pred CHHHHHHHHHHHhhcCChHHHHH
Q 039757 340 DVVVRRILLGACSFHGNVEMGER 362 (415)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~ 362 (415)
+....+++...|...+|++.-.+
T Consensus 279 ~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 279 NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHhCcchhHHHHH
Confidence 44577777777777777655333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3.9e-06 Score=60.49 Aligned_cols=93 Identities=14% Similarity=0.009 Sum_probs=77.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc-------cHHHHHH
Q 039757 312 GCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG-------DYVLMYN 383 (415)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~ 383 (415)
..+...|.+.|++++|+..|++.....| +..++..+..+|.+.|++++|+..++++++..|.+.. +|..++.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 3467789999999999999988776644 5778999999999999999999999999999887655 4555666
Q ss_pred HHHhcCchhhHHHHHHHHhhh
Q 039757 384 ILAGVGRYVDAERLRRVMDER 404 (415)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m~~~ 404 (415)
.+...+++++|.+.+++....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 777888999999999887654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=4.9e-06 Score=63.31 Aligned_cols=93 Identities=13% Similarity=-0.052 Sum_probs=78.0
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCC---c-------------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCcc
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEI---T-------------DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~---p-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 377 (415)
....+.+.|++++|+..|++..... + ...+|..+..+|.+.|++++|+..++.+++.+|.++.+
T Consensus 19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a 98 (170)
T d1p5qa1 19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKG 98 (170)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhh
Confidence 4556889999999999986543210 0 12456667888999999999999999999999999999
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 378 YVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 378 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
+..++.+|...|++++|...|++..+.+.
T Consensus 99 ~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 99 LSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999987653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.05 E-value=0.00069 Score=55.03 Aligned_cols=216 Identities=9% Similarity=-0.097 Sum_probs=132.0
Q ss_pred CchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHHHc----CCChhHHHHHhcccCCC-chhhHHHHH
Q 039757 67 DSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS----LGFLKDSSKLFDELPER-NLVTWNVMI 141 (415)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li 141 (415)
|+..+..|...+.+.+++++|.+.|++..+.| +...+..|...|.. ..+...|...++...++ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence 34567777788888999999999999998877 34445446666654 55788888888876653 444555555
Q ss_pred HHHHh----hCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHhccCCCCcc-----------CCCchHHHHhHHHHHhh---
Q 039757 142 TGLVK----WGELEYARSLFEEMPCRN-VVSWTGILDGYTRMNRSNGAS-----------TEPSEITILAVLPAIWQ--- 202 (415)
Q Consensus 142 ~~~~~----~g~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~~~~~~a~-----------~~~~~~~~~~ll~~~~~--- 202 (415)
..+.. ..+.+.|...++...+.+ ......+...+.......... ...+...+..+...+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC
Confidence 54443 467788888887765432 222233333332211111111 22334444455555543
Q ss_pred -cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc----cC
Q 039757 203 -NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAM----HG 273 (415)
Q Consensus 203 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 273 (415)
..+...+...++...+.| +......+...|.. ..++++|...|++..+. -++..+..|...|.. ..
T Consensus 158 ~~~~~~~~~~~~~~a~~~g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 158 TPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-ENGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSSC
T ss_pred cccccccchhhhhcccccc----ccccccchhhhcccCcccccchhhhhhhHhhhhcc-cCHHHHHHHHHHHHcCCCCcc
Confidence 345556666666666554 56666666666665 45788888888877664 345566666666654 33
Q ss_pred chHHHHHHHHHHHhcCC
Q 039757 274 MGKAAVENFERMQKVGL 290 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~ 290 (415)
+.++|.++|++....|.
T Consensus 233 n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CSTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcC
Confidence 67778888887766653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.03 E-value=1.3e-05 Score=61.20 Aligned_cols=70 Identities=11% Similarity=-0.118 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh-----hccccCC
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE-----RNALKFP 410 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 410 (415)
...+..+...+...|++++|+..++++++.+|.+...|..++.+|.+.|+.++|.+.|+++.+ .|+.|.|
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 345666777788888888888888888888888888888888888888888888888887743 4665543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.02 E-value=0.0026 Score=53.10 Aligned_cols=221 Identities=15% Similarity=0.118 Sum_probs=109.7
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCCCCChhHHHHHHHHHHhccC
Q 039757 101 SHVYVNTALVNMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGILDGYTRMNR 180 (415)
Q Consensus 101 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 180 (415)
|+..-...+.+.|.+.|.++.|..+|..+.. |.-++..+.+.++++.|.+++.+.. +..+|..+...+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l----- 79 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFAC----- 79 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHH-----
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHH-----
Confidence 3443444455666677777777777766543 5556666677777777777766553 222333333333
Q ss_pred CCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCCh
Q 039757 181 SNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNL 259 (415)
Q Consensus 181 ~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~ 259 (415)
.+......+ .+...+... ++.....++..|...|.+++...+++..... +.+.
T Consensus 80 --------------------~~~~e~~la-----~i~~~~~~~-~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~ 133 (336)
T d1b89a_ 80 --------------------VDGKEFRLA-----QMCGLHIVV-HADELEELINYYQDRGYFEELITMLEAALGLERAHM 133 (336)
T ss_dssp --------------------HHTTCHHHH-----HHTTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH
T ss_pred --------------------HhCcHHHHH-----HHHHHHhhc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccch
Confidence 222222211 111111111 4444556777777777888877777765543 3556
Q ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCc
Q 039757 260 VSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEIT 339 (415)
Q Consensus 260 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (415)
..++.++..|++.+. ++ +.+.+... .+......++..|.+.+ .|..++..|.+.|++++|..+.-+-. +
T Consensus 134 ~~~~~L~~lyak~~~-~k---l~e~l~~~---s~~y~~~k~~~~c~~~~-l~~elv~Ly~~~~~~~~A~~~~i~~~---~ 202 (336)
T d1b89a_ 134 GMFTELAILYSKFKP-QK---MREHLELF---WSRVNIPKVLRAAEQAH-LWAELVFLYDKYEEYDNAIITMMNHP---T 202 (336)
T ss_dssp HHHHHHHHHHHTTCH-HH---HHHHHHHH---STTSCHHHHHHHHHTTT-CHHHHHHHHHHTTCHHHHHHHHHHST---T
T ss_pred HHHHHHHHHHHHhCh-HH---HHHHHHhc---cccCCHHHHHHHHHHcC-ChHHHHHHHHhcCCHHHHHHHHHHcc---h
Confidence 667777777777653 33 33333331 12223333444443333 35667777888888888776653322 1
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 039757 340 DVVVRRILLGACSFHGNVEMGERVTRKVLEM 370 (415)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 370 (415)
+..-...++..+.+..+.+...++....++.
T Consensus 203 ~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~ 233 (336)
T d1b89a_ 203 DAWKEGQFKDIITKVANVELYYRAIQFYLEF 233 (336)
T ss_dssp TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHc
Confidence 2222334455556666666666665555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.01 E-value=2.6e-05 Score=58.97 Aligned_cols=93 Identities=12% Similarity=-0.070 Sum_probs=74.3
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
|..+...|.+.|++++|+..++......| +..+|..+..++...|++++|...|+++++.+|.+..+...+..+....+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 34466778999999999999988766534 67799999999999999999999999999999999888888877776666
Q ss_pred chhh-HHHHHHHHhh
Q 039757 390 RYVD-AERLRRVMDE 403 (415)
Q Consensus 390 ~~~~-A~~~~~~m~~ 403 (415)
...+ ..+++..|-+
T Consensus 147 ~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 147 EHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 5543 4555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=5.9e-05 Score=53.97 Aligned_cols=101 Identities=8% Similarity=-0.004 Sum_probs=82.9
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-Ch-------hhHH
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK-NL-------VSWT 263 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~-------~~~~ 263 (415)
.+..+...+.+.|++++|...|.+.++. .|.+..++..+..+|.+.|++++|.+.++++.+..| +. .+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3456777889999999999999999998 677899999999999999999999999999877522 22 3566
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhcCCCCChhh
Q 039757 264 SIISGFAMHGMGKAAVENFERMQKVGLKPNRVT 296 (415)
Q Consensus 264 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 296 (415)
.+...+...+++++|+..|++.... .|+...
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 114 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDV 114 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHH
Confidence 6777888889999999999987764 344433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=1.3e-05 Score=60.73 Aligned_cols=84 Identities=6% Similarity=-0.141 Sum_probs=66.8
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcC
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVG 389 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (415)
|..+...|.+.|++++|+..++......| +...|..+..++...|++++|++.|+++++..|.+..+...+..+..+..
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 34466778899999999999988776634 66789999999999999999999999999999988887777777665554
Q ss_pred chhhH
Q 039757 390 RYVDA 394 (415)
Q Consensus 390 ~~~~A 394 (415)
...++
T Consensus 160 ~~~~~ 164 (169)
T d1ihga1 160 AQKDK 164 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.99 E-value=9.3e-06 Score=60.48 Aligned_cols=93 Identities=11% Similarity=-0.057 Sum_probs=77.2
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCC------CcC-----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSE------ITD-----------VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~------~p~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 376 (415)
-...+.+.|++++|+..|++.... .++ ..+|..+..+|.+.|++++|++.++++++.+|.+..
T Consensus 23 ~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~k 102 (153)
T d2fbna1 23 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK 102 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhh
Confidence 344577889999999988754321 111 235667888899999999999999999999999999
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 377 DYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 377 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
+|..++.+|...|++++|...|++..+.+.
T Consensus 103 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 103 ALYKLGVANMYFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred hhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999887654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.93 E-value=0.00012 Score=55.59 Aligned_cols=102 Identities=12% Similarity=0.184 Sum_probs=82.4
Q ss_pred HHHHHhhcCChhHHHHHHhhhhhcCCCC--C------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 039757 196 VLPAIWQNGAVRNCQLIHGYGEKRGFNA--F------------------DIRVSNCLIDTYAKCGCIFSALKLFEDISVE 255 (415)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 255 (415)
........|+++.|...|...+...-.+ . ....+..++.++.+.|++++|...++++...
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 96 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 96 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 3446678889999988888887741111 0 1245677899999999999999999999888
Q ss_pred CC-ChhhHHHHHHHHHccCchHHHHHHHHHHHh-----cCCCCChhhH
Q 039757 256 RK-NLVSWTSIISGFAMHGMGKAAVENFERMQK-----VGLKPNRVTF 297 (415)
Q Consensus 256 ~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~ 297 (415)
.| +...|..++.+|...|+..+|+..|+++.. .|+.|+..+-
T Consensus 97 ~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 97 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 65 778899999999999999999999999844 5999987663
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.91 E-value=2.7e-05 Score=57.82 Aligned_cols=76 Identities=13% Similarity=-0.079 Sum_probs=64.6
Q ss_pred hHHHHHHhHhcCCHHHHHHHHhcCCCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHH
Q 039757 311 YGCLVDMLGRAGRLEQAEKIALGIPSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILA 386 (415)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (415)
|..+...|.+.|++++|++.++......| +..+|..+..++...|++++|+..|++..+.+|.+..+...+..+..
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44577789999999999999988766545 67799999999999999999999999999999998877766655543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.86 E-value=1.5e-05 Score=60.44 Aligned_cols=92 Identities=11% Similarity=-0.060 Sum_probs=76.6
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCC----------------Cc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCc
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSE----------------IT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGG 376 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~----------------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 376 (415)
....+...|++++|++.|++.... .| ....|..+..++.+.|++++|+..++++++..|.++.
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 112 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 112 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh
Confidence 445577788888888877654321 12 3446777888899999999999999999999999999
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 377 DYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 377 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
+|..++.+|.+.|++++|.+.|++..+..
T Consensus 113 a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 113 ALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=0.011 Score=51.84 Aligned_cols=54 Identities=0% Similarity=-0.145 Sum_probs=42.3
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHHHHHHHHhh
Q 039757 348 LGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAERLRRVMDE 403 (415)
Q Consensus 348 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 403 (415)
+..+...|....|...|..+.+.. ++.....++....+.|.++.|+....+...
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 456778899999999998887543 455677888888999999999988776543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=4.8e-06 Score=75.33 Aligned_cols=91 Identities=12% Similarity=-0.025 Sum_probs=59.1
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhh
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVD 393 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 393 (415)
+...+.+.|+.++|...++...... ...++..+...+...|++++|...++++.+..|.+..+|+.|+..+...|+..+
T Consensus 126 lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~ 204 (497)
T d1ya0a1 126 LGIISNKQTHTSAIVKPQSSSCSYI-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLT 204 (497)
T ss_dssp -----------------CCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHhCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHH
Confidence 5555667777777776654433211 124667788888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 039757 394 AERLRRVMDERN 405 (415)
Q Consensus 394 A~~~~~~m~~~~ 405 (415)
|...+.+.....
T Consensus 205 A~~~y~ral~~~ 216 (497)
T d1ya0a1 205 TIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHHhCC
Confidence 999888776544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.64 E-value=0.00032 Score=52.74 Aligned_cols=108 Identities=12% Similarity=0.012 Sum_probs=83.5
Q ss_pred HHHhHHHHHhhcCChhHHHHHHhhhhhcC---C----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-
Q 039757 192 TILAVLPAIWQNGAVRNCQLIHGYGEKRG---F----------NAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVERK- 257 (415)
Q Consensus 192 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 257 (415)
.+......+.+.|+++.|...|......- . .+....+|+.+..+|.+.|++++|+..+++.....|
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~ 96 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 96 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc
Confidence 34556667788888888888887766420 0 011234567788899999999999999999988754
Q ss_pred ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHH
Q 039757 258 NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVL 301 (415)
Q Consensus 258 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (415)
+..+|..+..+|...|++++|...|++..+. .|+.......+
T Consensus 97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l 138 (168)
T d1kt1a1 97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQI 138 (168)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 7788999999999999999999999999884 67776554433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=2.7e-05 Score=70.23 Aligned_cols=79 Identities=5% Similarity=-0.121 Sum_probs=58.8
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHH
Q 039757 191 ITILAVLPAIWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGF 269 (415)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~ 269 (415)
..+..+...+...+++++|...|.+..+. .|.+...|+.|...+...|+..+|...|.+.... +|-..++..|...+
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34556666777788888888888888887 5777888888888888888888888888877665 34555666666655
Q ss_pred Hc
Q 039757 270 AM 271 (415)
Q Consensus 270 ~~ 271 (415)
.+
T Consensus 231 ~~ 232 (497)
T d1ya0a1 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.58 E-value=0.0001 Score=59.94 Aligned_cols=126 Identities=14% Similarity=0.063 Sum_probs=76.4
Q ss_pred HhcCCHHHHHHHHHHhhhhCC-ChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHH
Q 039757 237 AKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLV 315 (415)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li 315 (415)
.+.|++++|+..+++..+..| |...+..+...|+..|++++|...|+...+. .|+....... +.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~-------------l~ 71 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQ-------------LR 71 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHH-------------HH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHH-------------HH
Confidence 456777888888877776644 5677777888888888888888888877764 4554443221 11
Q ss_pred HHhHhcCCHHHHHHHHhcC-CCCCc-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCcc
Q 039757 316 DMLGRAGRLEQAEKIALGI-PSEIT-DVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGD 377 (415)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 377 (415)
..+...+..+++..-.... ....| +...+......+...|+.++|.+.++++.+..|..+..
T Consensus 72 ~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 72 HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 1222223333332221111 11123 23344445566788899999999999999888765443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.51 E-value=0.00011 Score=54.64 Aligned_cols=91 Identities=16% Similarity=-0.001 Sum_probs=71.7
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCC---Cc----------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccC----C---
Q 039757 315 VDMLGRAGRLEQAEKIALGIPSE---IT----------DVVVRRILLGACSFHGNVEMGERVTRKVLEMERG----N--- 374 (415)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~---~p----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~--- 374 (415)
...+.+.|++++|+..|++.... .| ....|+.+..+|...|++++|.+.+++.++..+. .
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44567789999999988765432 12 1357888999999999999999999999876542 1
Q ss_pred ----CccHHHHHHHHHhcCchhhHHHHHHHHhhhc
Q 039757 375 ----GGDYVLMYNILAGVGRYVDAERLRRVMDERN 405 (415)
Q Consensus 375 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 405 (415)
..++..++.+|...|++++|.+.|++..+..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2357788999999999999999999987654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.45 E-value=0.00023 Score=51.99 Aligned_cols=100 Identities=13% Similarity=0.029 Sum_probs=80.2
Q ss_pred HhhcCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhhCC-ChhhHHHHHHH
Q 039757 200 IWQNGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKC----------GCIFSALKLFEDISVERK-NLVSWTSIISG 268 (415)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 268 (415)
+.+.+.+++|...|+...+. .|.++.++..+..+|... +.+++|+..|+++.+..| +..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence 45667799999999999998 688999999999988754 445789999999888755 67789889888
Q ss_pred HHccC-----------chHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 039757 269 FAMHG-----------MGKAAVENFERMQKVGLKPNRVTFLSVLNA 303 (415)
Q Consensus 269 ~~~~~-----------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (415)
|...| .+++|.+.|++..+ +.|+...|..-+.-
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~ 128 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 128 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHH
Confidence 87654 36889999998887 47888887765443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.44 E-value=0.00024 Score=51.93 Aligned_cols=124 Identities=11% Similarity=-0.003 Sum_probs=86.7
Q ss_pred HHhhCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhccCCCCccCCCchHHHHhHHHHHhhcCChhHHHHHHhhhhhcC
Q 039757 144 LVKWGELEYARSLFEEMPC--R-NVVSWTGILDGYTRMNRSNGASTEPSEITILAVLPAIWQNGAVRNCQLIHGYGEKRG 220 (415)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 220 (415)
|-+.+.+++|.+.|+...+ | +...+..+..++...+++..+. ...+.+++|...|++.++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~---------------e~~~~~~~Ai~~~~kAl~l- 70 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSIS---------------DAKQMIQEAITKFEEALLI- 70 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHH---------------HHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhh---------------HHHHHHHHHHHHHHHHHHh-
Confidence 4456779999999999863 3 4445555555555444333321 1345668899999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcC
Q 039757 221 FNAFDIRVSNCLIDTYAKCGC-----------IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVG 289 (415)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 289 (415)
.|.+..+|..+..+|...|+ +++|.+.|++..+..|+...|..-+..+ .+|.+++.+..+.|
T Consensus 71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 68899999999999987653 6889999999888878766655544433 46677777776665
Q ss_pred C
Q 039757 290 L 290 (415)
Q Consensus 290 ~ 290 (415)
+
T Consensus 144 ~ 144 (145)
T d1zu2a1 144 L 144 (145)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.39 E-value=0.00023 Score=57.82 Aligned_cols=118 Identities=13% Similarity=-0.085 Sum_probs=86.3
Q ss_pred HhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 039757 34 FYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSHVYVNTALVNMY 113 (415)
Q Consensus 34 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 113 (415)
-..+.|++++|+..+++.. +..+. |...+..+...++..|++++|.+.++...+.. +-+...+..+...+
T Consensus 5 ~aL~~G~l~eAl~~l~~al---~~~P~------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll 74 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAI---KASPK------DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLV 74 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHH---HTCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH---HHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3567899999999999999 77777 99999999999999999999999999998874 22344555555555
Q ss_pred HcCCChhHHHHHhccc--C-CC-chhhHHHHHHHHHhhCCHHHHHHHHhhCC
Q 039757 114 VSLGFLKDSSKLFDEL--P-ER-NLVTWNVMITGLVKWGELEYARSLFEEMP 161 (415)
Q Consensus 114 ~~~g~~~~a~~~~~~~--~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (415)
...+..+++..-.... . .| +...+......+.+.|+.++|.+.+++..
T Consensus 75 ~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~ 126 (264)
T d1zbpa1 75 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126 (264)
T ss_dssp HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444444443322221 1 12 23344555677888999999999998875
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.15 E-value=0.0017 Score=47.76 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=73.1
Q ss_pred HHHhH--HHHHhhcCChhHHHHHHhhhhhcCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----
Q 039757 192 TILAV--LPAIWQNGAVRNCQLIHGYGEKRGFNAF----------DIRVSNCLIDTYAKCGCIFSALKLFEDISVE---- 255 (415)
Q Consensus 192 ~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 255 (415)
++..+ .....+.|++++|...|.+.++..-.-+ ....|+.+..+|.+.|++++|...+++....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 4455678999999999999987421111 2467889999999999999999999987653
Q ss_pred ---CCC-----hhhHHHHHHHHHccCchHHHHHHHHHHHh
Q 039757 256 ---RKN-----LVSWTSIISGFAMHGMGKAAVENFERMQK 287 (415)
Q Consensus 256 ---~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 287 (415)
.++ ...++.+..+|...|++++|+..|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 23577788999999999999999999765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.0003 Score=47.01 Aligned_cols=70 Identities=17% Similarity=0.072 Sum_probs=56.3
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCC-------CcC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 314 LVDMLGRAGRLEQAEKIALGIPSE-------ITD-VVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~-------~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
+...+.+.|++++|...|++.... .++ ..++..+..++.+.|++++|+..++++++.+|.++.++..+..
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 677788999999998888765432 222 4578889999999999999999999999999998877776643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0015 Score=43.45 Aligned_cols=67 Identities=10% Similarity=-0.125 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCC-------CccHHHHHHHHHhcCchhhHHHHHHHHhhhccc
Q 039757 341 VVVRRILLGACSFHGNVEMGERVTRKVLEMERGN-------GGDYVLMYNILAGVGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 407 (415)
...+-.+...+.+.|+++.|+..|+++++..+.+ ..++..|+.++.+.|++++|...++++.+.+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 3444467888999999999999999999877653 246889999999999999999999999887643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.39 E-value=0.071 Score=36.25 Aligned_cols=141 Identities=14% Similarity=0.101 Sum_probs=94.7
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHH
Q 039757 236 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLV 315 (415)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li 315 (415)
+.-.|..++..+++.+.... .+..-||-+|.-....-+-+...++++..-+. .|
T Consensus 12 ~ildG~ve~Gveii~k~~~s-s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD---------------------- 65 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS-STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD---------------------- 65 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------------------
T ss_pred HHHhhhHHhHHHHHHHHccc-CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------------------
Confidence 44567778888888777663 45556777776666666666666666665331 22
Q ss_pred HHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHHHHHhcCchhhHH
Q 039757 316 DMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYNILAGVGRYVDAE 395 (415)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 395 (415)
...++++......+-.+-. +......-+..+..+|+-+.-.++.+.+.+.+..+++....++.+|.+-|...++.
T Consensus 66 --ls~C~Nlk~vv~C~~~~n~---~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~n 140 (161)
T d1wy6a1 66 --LDKCQNLKSVVECGVINNT---LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDAT 140 (161)
T ss_dssp --GGGCSCTHHHHHHHHHTTC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred --chhhhcHHHHHHHHHHhcc---hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHH
Confidence 2334555555554444332 44555666777778888888888888877777777888888888888888888888
Q ss_pred HHHHHHhhhccc
Q 039757 396 RLRRVMDERNAL 407 (415)
Q Consensus 396 ~~~~~m~~~~~~ 407 (415)
+++.+..+.|++
T Consensus 141 ell~~ACe~G~K 152 (161)
T d1wy6a1 141 TLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHHhHH
Confidence 888888888765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.60 E-value=0.057 Score=37.88 Aligned_cols=112 Identities=10% Similarity=-0.065 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHHhcCCCCChhhHHHHHHHHccCCcchHHHHHHhHhcCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhh
Q 039757 274 MGKAAVENFERMQKVGLKPNRVTFLSVLNACSHGGLHYGCLVDMLGRAGRLEQAEKIALGIPSEITDVVVRRILLGACSF 353 (415)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 353 (415)
++++|..+|++..+.|.. ..... |. .....+.++|.+.+++..+. -++.....|...|..
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~--------------l~--~~~~~~~~~a~~~~~~aa~~-g~~~a~~~Lg~~y~~ 67 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLS--------------LV--SNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYEN 67 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHH--------------HH--TCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhh--------------hc--cccccCHHHHHHHHhhhhcc-cchhhhhhHHHhhhh
Confidence 678888888888776522 11111 11 23456788999988876554 355555556655553
Q ss_pred ----cCChHHHHHHHHHHHHcccCCCccHHHHHHHHHh----cCchhhHHHHHHHHhhhccc
Q 039757 354 ----HGNVEMGERVTRKVLEMERGNGGDYVLMYNILAG----VGRYVDAERLRRVMDERNAL 407 (415)
Q Consensus 354 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 407 (415)
..|.++|.++|++..+.+ ++.....|...|.. ..+.++|.+++++..+.|..
T Consensus 68 g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 68 GKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred ccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 567899999999998865 45667778888776 46899999999998887764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.74 Score=39.66 Aligned_cols=163 Identities=9% Similarity=-0.030 Sum_probs=88.7
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHhcCCCchHHHHHHHHHHcCCCCc-hhhHHHHH
Q 039757 32 LHFYSLADSPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVISKVGFQSH-VYVNTALV 110 (415)
Q Consensus 32 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li 110 (415)
+....+.|+...+..+...+. .. | ...|...-..-.+.++. ...++...+.+..-.|- .......+
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~---dy-----p----L~pYl~~~~l~~~~~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l 79 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLK---DY-----P----LYPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFV 79 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGT---TS-----T----THHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhc---CC-----C----CHHHHHHHHHHhccccC-CHHHHHHHHHHCCCChhHHHHHHHHH
Confidence 344556888888777766654 11 1 12343333322232322 23345555555432332 22334456
Q ss_pred HHHHcCCChhHHHHHhcccCCCchhhHHHHHHHHHhhCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhccCCCCccCC
Q 039757 111 NMYVSLGFLKDSSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGILDGYTRMNRSNGASTE 187 (415)
Q Consensus 111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~ 187 (415)
..+.+.++++.....+..-+ .+...-.....+..+.|+.++|...+..+= ......+..+...+.+.|.
T Consensus 80 ~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~------- 151 (450)
T d1qsaa1 80 NELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK------- 151 (450)
T ss_dssp HHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC-------
T ss_pred HHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC-------
Confidence 77888899988887775432 244444567777888999999888776542 2344556667766665543
Q ss_pred CchHHHHhHHHHHhhcCChhHHHHHHhh
Q 039757 188 PSEITILAVLPAIWQNGAVRNCQLIHGY 215 (415)
Q Consensus 188 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 215 (415)
++...+-.-+......|+...|..+...
T Consensus 152 lt~~~~~~R~~~~l~~~~~~~a~~l~~~ 179 (450)
T d1qsaa1 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQ 179 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHhh
Confidence 2223333333334444556555555543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.74 E-value=0.29 Score=33.95 Aligned_cols=83 Identities=12% Similarity=-0.041 Sum_probs=62.7
Q ss_pred cCChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCChhhHHHHHHHHHc----cCc
Q 039757 203 NGAVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAM----HGM 274 (415)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~ 274 (415)
..+.+++...++...+.| ++.....|...|.. ..+.++|.++|++..+. -++.....|...|.. ..+
T Consensus 36 ~~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCC
T ss_pred ccCHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc-CcchHHHHHHHHHHcCCccCCC
Confidence 457788888998888876 66677777777765 45789999999998775 455566666666665 458
Q ss_pred hHHHHHHHHHHHhcCC
Q 039757 275 GKAAVENFERMQKVGL 290 (415)
Q Consensus 275 ~~~A~~~~~~m~~~g~ 290 (415)
.++|..+|++..+.|.
T Consensus 111 ~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 111 EKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 8999999999887653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.054 Score=37.07 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=52.8
Q ss_pred cCHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcccCC-CccHHHHHHHHHhcCchhhHHHHHHHHhhhcc
Q 039757 339 TDVVVRRILLGACSFHG---NVEMGERVTRKVLEMERGN-GGDYVLMYNILAGVGRYVDAERLRRVMDERNA 406 (415)
Q Consensus 339 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 406 (415)
|+..+--....++.++. +.++++.+++.+...+|.+ ...+..|+.+|.+.|++++|.+.++.+.+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 56666666777777654 4568899999998877664 46778899999999999999999988876553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.41 E-value=0.2 Score=34.15 Aligned_cols=89 Identities=7% Similarity=0.025 Sum_probs=59.5
Q ss_pred CCchhhHHHHHHhHhhccCCcchHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHH
Q 039757 2 PSSNNVTTRIHSHLLTTNSLLHHTLLFNTLLHFYSLAD---SPKKAFLLYKQLQQIYTHSHSPLRPLFDSFTYSFLIRTC 78 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~ 78 (415)
|-+++....+-....+.++-.|++.+--....+++++. +.++++.+|+... ..++. . ....+-.|.-+|
T Consensus 12 pl~~~el~~~~~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~---~~~p~--~---~rd~lY~Lav~y 83 (124)
T d2pqrb1 12 PLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY---KEAES--R---RRECLYYLTIGC 83 (124)
T ss_dssp CCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH---HHCGG--G---HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHH---hcCch--h---HHHHHHHHHHHH
Confidence 44556666776766666444466666666666777654 4467888888877 54433 1 234556666778
Q ss_pred HhcCCCchHHHHHHHHHHcC
Q 039757 79 VTLSYPNLGTQLHAVISKVG 98 (415)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~g 98 (415)
.+.|+++.|...++.+++..
T Consensus 84 yklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 84 YKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHccC
Confidence 88899999999988888763
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.63 E-value=0.93 Score=30.67 Aligned_cols=63 Identities=14% Similarity=0.003 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHHHHHccCchHHHHHHHHHHHhcCC
Q 039757 228 VSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKAAVENFERMQKVGL 290 (415)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 290 (415)
.....++....+|+-+.-.++++++.+. .+++...-.+..+|.+-|...++-+++.+.-+.|+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3344444455555555555555543322 34444444555555555555555555555544443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.23 E-value=1.7 Score=27.71 Aligned_cols=62 Identities=6% Similarity=0.029 Sum_probs=46.9
Q ss_pred ChhHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCChhhHHHHHH
Q 039757 205 AVRNCQLIHGYGEKRGFNAFDIRVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIIS 267 (415)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~ 267 (415)
+.-++.+-+..+......| ++.+..+.+++|-+.+++..|.++|+.++.. +++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVP-eP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 5556677777777777777 8888888999999999999999999888765 334455665553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.86 E-value=4.5 Score=25.73 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=45.3
Q ss_pred CHHHHHHHHhcCCCC--CcCHHHHHHHHHHHhhcCChHHHHHHHHHHHHcccCCCccHHHHHH
Q 039757 323 RLEQAEKIALGIPSE--ITDVVVRRILLGACSFHGNVEMGERVTRKVLEMERGNGGDYVLMYN 383 (415)
Q Consensus 323 ~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 383 (415)
+.-++.+-++.+-.- .|++....+-+++|.+.+|+..|.++|+-++...-.+...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 333444444443333 6999999999999999999999999999998766555667766654
|