Citrus Sinensis ID: 039848

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
ALSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEEccccccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEcccEEccccccccEEEEc
Coil and Loop (DISEMBL)
ALSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFvdgffspiyahlginisglgfmTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQisaaispdqktkAFKEVAiirhprigesaIGFITSTLilhgssgqeelccvf
Flexible Loop (DISEMBL)
ALSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITSTLilhgssgqeelccvf
Low Complexity Region (SEG)
ALSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF
Disordered region (IsUnstruct)
****VIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCC**
Disordered Region (DISOPRED)
******R*WAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAIS*******FKEVAIIRHPRIGESAIGFITSTLI*****GQEELCCVF
Disordered Region (DISEMBL)
ALSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF
Disordered Region (DISPRO)
ALSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ALSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
224119792	254	predicted protein [Populus trichocarpa]	0.926	0.598	0.776	2e-67
255538614	267	conserved hypothetical protein [Ricinus	0.945	0.580	0.774	4e-67
297832506	251	hypothetical protein ARALYDRAFT_480753 [	0.945	0.617	0.774	7e-67
334184297	274	protein like-COV 3 [Arabidopsis thaliana	0.945	0.565	0.774	1e-66
225445216	266	PREDICTED: uncharacterized protein LOC10	0.926	0.571	0.770	2e-66
225458303	264	PREDICTED: uncharacterized protein LOC10	0.945	0.587	0.756	2e-66
217073912	265	unknown [Medicago truncatula]	0.932	0.577	0.759	3e-66
357520997	265	hypothetical protein MTR_8g103420 [Medic	0.932	0.577	0.759	3e-66
388492226	265	unknown [Medicago truncatula]	0.932	0.577	0.759	3e-66
356531281	265	PREDICTED: uncharacterized protein LOC10	0.926	0.573	0.776	3e-66

>gi|224119792|ref|XP_002331162.1| predicted protein [Populus trichocarpa] gi|222873245|gb|EEF10376.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/161 (77%), Positives = 140/161 (86%), Gaps = 9/161 (5%)

Query: 4   KVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINIS 63
           KV+RSWA KKFMTGC         VIL PIAITFY+TWWF+HFVDGFFSPIYAHLGI+I 
Sbjct: 42  KVVRSWASKKFMTGC---------VILFPIAITFYITWWFVHFVDGFFSPIYAHLGIDIF 92

Query: 64  GLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKT 123
           GLGF+TSITFIFLVGVFMSSWLGAS+LSLGEW IK+MP + +IY+ASKQISAAISPDQ T
Sbjct: 93  GLGFITSITFIFLVGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNT 152

Query: 124 KAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
           +AFKEVAIIRHPRIGE A GFITS++IL   SG+EELCCV+
Sbjct: 153 QAFKEVAIIRHPRIGEYAFGFITSSVILQNYSGEEELCCVY 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538614|ref|XP_002510372.1| conserved hypothetical protein [Ricinus communis] gi|223551073|gb|EEF52559.1| conserved hypothetical protein [Ricinus communis]

 Score =  259 bits (661), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 127/164 (77%), Positives = 139/164 (84%), Gaps = 9/164 (5%)

Query: 1   ALSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGI 60
           ALS VIRSWA KKFMTGC         VILLPIA+TFY+TW F+HFVDGFFSP+Y HLGI
Sbjct: 48  ALSTVIRSWASKKFMTGC---------VILLPIAVTFYITWGFVHFVDGFFSPVYNHLGI 98

Query: 61  NISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPD 120
           NI GLGF TSITFIFLVG+FMSSWLG S+L++GEW IKKMPL+SYIYSASKQISAAISPD
Sbjct: 99  NIFGLGFATSITFIFLVGIFMSSWLGTSVLTIGEWFIKKMPLVSYIYSASKQISAAISPD 158

Query: 121 QKTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
           Q T AFKEVAIIRHPR GE A GFITST+IL  S G+EELCCV+
Sbjct: 159 QTTNAFKEVAIIRHPRNGEYAFGFITSTVILQRSIGEEELCCVY 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832506|ref|XP_002884135.1| hypothetical protein ARALYDRAFT_480753 [Arabidopsis lyrata subsp. lyrata] gi|297329975|gb|EFH60394.1| hypothetical protein ARALYDRAFT_480753 [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (658), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 127/164 (77%), Positives = 140/164 (85%), Gaps = 9/164 (5%)

Query: 1   ALSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGI 60
           A+ KVIRSWA KKFMTGC         VILLPIA+TFY TWWFIHFVDGFFSPIY HLGI
Sbjct: 44  AIYKVIRSWASKKFMTGC---------VILLPIAVTFYFTWWFIHFVDGFFSPIYTHLGI 94

Query: 61  NISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPD 120
           N+ GLGF+TSITFIF+VGVFMSSWLGAS+LS+GEW IKKMPL+SYIYSASKQIS AISPD
Sbjct: 95  NMFGLGFVTSITFIFMVGVFMSSWLGASVLSIGEWFIKKMPLVSYIYSASKQISGAISPD 154

Query: 121 QKTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
           Q + AFKEVAIIRHP +GE A GFITST+IL G +G EELCCV+
Sbjct: 155 QSSGAFKEVAIIRHPHMGEYAFGFITSTVILRGRAGGEELCCVY 198

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184297|ref|NP_179436.3| protein like-COV 3 [Arabidopsis thaliana] gi|330251676|gb|AEC06770.1| protein like-COV 3 [Arabidopsis thaliana]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 127/164 (77%), Positives = 140/164 (85%), Gaps = 9/164 (5%)

Query: 1   ALSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGI 60
           A+ KVIRSWA KKFMTGC         VILLPIA+TFY TWWFIHFVDGFFSPIY HLGI
Sbjct: 44  AIYKVIRSWASKKFMTGC---------VILLPIAVTFYFTWWFIHFVDGFFSPIYTHLGI 94

Query: 61  NISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPD 120
           N+ GLGF+TSITFIF+VGVFMSSWLGAS+LS+GEW IKKMPL+SYIYSASKQIS AISPD
Sbjct: 95  NMFGLGFVTSITFIFMVGVFMSSWLGASVLSIGEWFIKKMPLVSYIYSASKQISGAISPD 154

Query: 121 QKTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
           Q + AFKEVAIIRHP +GE A GFITST+IL G +G EELCCV+
Sbjct: 155 QSSGAFKEVAIIRHPHMGEYAFGFITSTVILRGRAGGEELCCVY 198

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445216|ref|XP_002284354.1| PREDICTED: uncharacterized protein LOC100262854 [Vitis vinifera] gi|297738813|emb|CBI28058.3| unnamed protein product [Vitis vinifera]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 138/161 (85%), Gaps = 9/161 (5%)

Query: 4   KVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINIS 63
           KV+RSWA KKFMTGC         VIL PIAITFY+TWWFIHFVDGFFSPIYA LGINI 
Sbjct: 53  KVVRSWASKKFMTGC---------VILFPIAITFYITWWFIHFVDGFFSPIYAQLGINIF 103

Query: 64  GLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKT 123
           GLGF+TSITFIFLVGVFMSSWLGAS+L LGEW IK+MP + +IYSASKQISAAISPDQ T
Sbjct: 104 GLGFITSITFIFLVGVFMSSWLGASVLGLGEWFIKRMPFVRHIYSASKQISAAISPDQNT 163

Query: 124 KAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
           +AFKEVAIIRHPRIGE A GFITS+++L   +G+EELCCV+
Sbjct: 164 QAFKEVAIIRHPRIGEYAFGFITSSVVLQSYTGEEELCCVY 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458303|ref|XP_002282793.1| PREDICTED: uncharacterized protein LOC100247211 [Vitis vinifera] gi|302142483|emb|CBI19686.3| unnamed protein product [Vitis vinifera]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/164 (75%), Positives = 140/164 (85%), Gaps = 9/164 (5%)

Query: 1   ALSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGI 60
           A SKVIRSWA KKFM+GC         VILLPIAITFY+TW F HFVDGFFSP+Y  LGI
Sbjct: 45  AFSKVIRSWASKKFMSGC---------VILLPIAITFYITWGFFHFVDGFFSPVYNQLGI 95

Query: 61  NISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPD 120
           N+ GLGF+TSITFIFLVGVFMSSWLGAS+L LGEW IKKMPL+SYIYSASKQISAAISPD
Sbjct: 96  NVFGLGFITSITFIFLVGVFMSSWLGASLLGLGEWFIKKMPLVSYIYSASKQISAAISPD 155

Query: 121 QKTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
           Q + AFKEVAIIRHPRIGE A GFIT+T++L  ++G+EELCC++
Sbjct: 156 QSSNAFKEVAIIRHPRIGEYAFGFITNTVLLQRNTGEEELCCIY 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073912|gb|ACJ85316.1| unknown [Medicago truncatula]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/162 (75%), Positives = 140/162 (86%), Gaps = 9/162 (5%)

Query: 3   SKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINI 62
           SKV++SWA KKFMTGC         VILLPIAITFY+TWWFIHFVDGFFSPIYA LGI+I
Sbjct: 52  SKVVQSWASKKFMTGC---------VILLPIAITFYITWWFIHFVDGFFSPIYAQLGIDI 102

Query: 63  SGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQK 122
            GLGF+TSITFIFLVGVFMSSWLGAS+L LGEW IK+MPL+ +IY+ASKQISAAISPDQ 
Sbjct: 103 FGLGFITSITFIFLVGVFMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQN 162

Query: 123 TKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
           ++AFKEVAIIRHPR+GE A GFITS+++L   SG EELCCV+
Sbjct: 163 SQAFKEVAIIRHPRVGEYAFGFITSSVVLQSYSGDEELCCVY 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520997|ref|XP_003630787.1| hypothetical protein MTR_8g103420 [Medicago truncatula] gi|355524809|gb|AET05263.1| hypothetical protein MTR_8g103420 [Medicago truncatula]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/162 (75%), Positives = 140/162 (86%), Gaps = 9/162 (5%)

Query: 3   SKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINI 62
           SKV++SWA KKFMTGC         VILLPIAITFY+TWWFIHFVDGFFSPIYA LGI+I
Sbjct: 52  SKVVQSWASKKFMTGC---------VILLPIAITFYITWWFIHFVDGFFSPIYAQLGIDI 102

Query: 63  SGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQK 122
            GLGF+TSITFIFLVGVFMSSWLGAS+L LGEW IK+MPL+ +IY+ASKQISAAISPDQ 
Sbjct: 103 FGLGFITSITFIFLVGVFMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQN 162

Query: 123 TKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
           ++AFKEVAIIRHPR+GE A GFITS+++L   SG EELCCV+
Sbjct: 163 SQAFKEVAIIRHPRVGEYAFGFITSSVVLQSYSGDEELCCVY 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492226|gb|AFK34179.1| unknown [Medicago truncatula]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/162 (75%), Positives = 140/162 (86%), Gaps = 9/162 (5%)

Query: 3   SKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINI 62
           SKV++SWA KKFMTGC         VILLPIAITFY+TWWFIHFVDGFFSPIYA LGI+I
Sbjct: 52  SKVVQSWASKKFMTGC---------VILLPIAITFYITWWFIHFVDGFFSPIYAQLGIDI 102

Query: 63  SGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQK 122
            GLGF+TSITFIFLVGVFMSSWLGAS+L LGEW IK+MPL+ +IY+ASKQISAAISPDQ 
Sbjct: 103 FGLGFITSITFIFLVGVFMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQN 162

Query: 123 TKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
           ++AFKEVAIIRHPR+GE A GFITS+++L   SG EELCCV+
Sbjct: 163 SQAFKEVAIIRHPRVGEYAFGFITSSVVLQSYSGDEELCCVY 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531281|ref|XP_003534206.1| PREDICTED: uncharacterized protein LOC100800188 [Glycine max]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/161 (77%), Positives = 137/161 (85%), Gaps = 9/161 (5%)

Query: 4   KVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINIS 63
           KVIRSWA KKFMTGC         VIL PIAITFY+TWWFIHFVDGFFSPIYA LGI+I 
Sbjct: 52  KVIRSWASKKFMTGC---------VILFPIAITFYITWWFIHFVDGFFSPIYAQLGIDIF 102

Query: 64  GLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKT 123
           GLGF+TSITFIFLVGVFMSSWLGAS+L LGEW IK+MPL+ +IY+ASKQISAAISPDQ T
Sbjct: 103 GLGFITSITFIFLVGVFMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQNT 162

Query: 124 KAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
           +AFKEVAIIRHPRIGE A GFITS++ L   SG EELCCV+
Sbjct: 163 QAFKEVAIIRHPRIGEYAFGFITSSVTLQNYSGDEELCCVY 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2061668	268	COV1 "AT2G20120" [Arabidopsis	0.939	0.574	0.730	5.5e-61
TAIR|locus:2061654	256	LCV1 "AT2G20130" [Arabidopsis	0.939	0.601	0.730	2.4e-60
TAIR|locus:2018640	261	LCV2 "AT1G43130" [Arabidopsis	0.920	0.578	0.625	2.8e-50
UNIPROTKB|Q5LRR3	224	SPO2062 "Uncharacterized prote	0.731	0.535	0.312	2.9e-16
TIGR_CMR|SPO_2062	224	SPO_2062 "conserved hypothetic	0.731	0.535	0.312	2.9e-16
UNIPROTKB|Q3AEZ4	211	CHY_0429 "Putative uncharacter	0.701	0.545	0.36	1.4e-14
TIGR_CMR|CHY_0429	211	CHY_0429 "conserved hypothetic	0.701	0.545	0.36	1.4e-14
UNIPROTKB|Q3Z7T7	214	DET0989 "Putative uncharacteri	0.792	0.607	0.291	6.2e-14
TIGR_CMR|DET_0989	214	DET_0989 "conserved hypothetic	0.792	0.607	0.291	6.2e-14
UNIPROTKB|Q83BF1	209	CBU_1559 "Hypothetical membran	0.847	0.665	0.297	2.7e-13

TAIR|locus:2061668 COV1 "AT2G20120" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 119/163 (73%), Positives = 134/163 (82%)

Query:     2 LSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGIN 61
             LS  IR WA KKFMTGC         VILLPIAITFY+TWWFIHFVDGFFSPIYA LGIN
Sbjct:    55 LSLFIRGWASKKFMTGC---------VILLPIAITFYITWWFIHFVDGFFSPIYAQLGIN 105

Query:    62 ISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQ 121
             + G GF+TSI FIFLVGVFMSSWLGAS+L+LGEW IK+MP + +IY+ASKQIS AISPDQ
Sbjct:   106 VFGFGFLTSIAFIFLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQ 165

Query:   122 KTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
              T+AFKEVAIIRHPR+GE A GFITST++L     +EELCCV+
Sbjct:   166 NTQAFKEVAIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVY 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009734 "auxin mediated signaling pathway" evidence=IGI

GO:0010222 "stem vascular tissue pattern formation" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2061654 LCV1 "AT2G20130" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 119/163 (73%), Positives = 133/163 (81%)

Query:     2 LSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGIN 61
             LS  IR WA KKFMTGC         VILLPIA+TFY TWWFIHFVDGFFSPIYA LGIN
Sbjct:    45 LSLFIRGWASKKFMTGC---------VILLPIAVTFYTTWWFIHFVDGFFSPIYALLGIN 95

Query:    62 ISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQ 121
             I G GF+TSI FIFLVGVFMSSWLGAS+L+LGEW IK+MP + +IY+ASKQIS AISPDQ
Sbjct:    96 IFGFGFLTSIAFIFLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQ 155

Query:   122 KTKAFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
              T+AFKEVAIIRHPR+GE A GFITST++L     +EELCCV+
Sbjct:   156 NTQAFKEVAIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVY 198

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2018640 LCV2 "AT1G43130" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 100/160 (62%), Positives = 123/160 (76%)

Query:     5 VIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISG 64
             V++SW  KKFMTG       F  V+L P+A+TF +TWWFI FVDGFFSPIY +LG++I G
Sbjct:    44 VLQSWVSKKFMTG-------F--VVLFPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFG 94

Query:    65 LGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTK 124
             LGF+TS+ F F VG+F SSWLG+++  LGE  I++MP + +IYSASKQIS AISPDQ T 
Sbjct:    95 LGFITSVLFTFFVGIFASSWLGSTVFWLGEQFIRRMPFVKHIYSASKQISTAISPDQNTT 154

Query:   125 AFKEVAIIRHPRIGESAIGFITSTLILHGSSGQEELCCVF 164
             AFKEVAIIRHPRIGE A GFITS++ L    G+EELC V+
Sbjct:   155 AFKEVAIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVY 194

GO:0003674 "molecular_function" evidence=ND

GO:0010222 "stem vascular tissue pattern formation" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|Q5LRR3 SPO2062 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 40/128 (31%), Positives = 74/128 (57%)

Query:    28 VILLPIAITFYLTWWFIHFVDGFFSPIYAH-------LGINISGLGFMTSITFIFLVGVF 80
             V++ P+ +T +L W  + +VD F  P+  H       +GIN+ G+G +  + F  +VG  
Sbjct:    29 VVIAPVGLTIWLFWSVVGWVDSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTIVVGWI 88

Query:    81 MSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGES 140
                 +G S++   E ++ +MP++  +YS  KQIS  +   Q  ++F++  +I++PR G  
Sbjct:    89 AKGIIGRSLIQYAEGVVDRMPVVRSVYSGIKQISETVFA-QTERSFEQACLIQYPRRGIW 147

Query:   141 AIGFITST 148
             AIGF+++T
Sbjct:   148 AIGFVSTT 155

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2062 SPO_2062 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 40/128 (31%), Positives = 74/128 (57%)

Query:    28 VILLPIAITFYLTWWFIHFVDGFFSPIYAH-------LGINISGLGFMTSITFIFLVGVF 80
             V++ P+ +T +L W  + +VD F  P+  H       +GIN+ G+G +  + F  +VG  
Sbjct:    29 VVIAPVGLTIWLFWSVVGWVDSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTIVVGWI 88

Query:    81 MSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGES 140
                 +G S++   E ++ +MP++  +YS  KQIS  +   Q  ++F++  +I++PR G  
Sbjct:    89 AKGIIGRSLIQYAEGVVDRMPVVRSVYSGIKQISETVFA-QTERSFEQACLIQYPRRGIW 147

Query:   141 AIGFITST 148
             AIGF+++T
Sbjct:   148 AIGFVSTT 155

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AEZ4 CHY_0429 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 45/125 (36%), Positives = 71/125 (56%)

Query:    29 ILLPIAITFYLTWWFIHFVD----GFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSW 84
             ++ P AIT Y+ +    F D    GFF+ I+   GI+I GLG +T    + +VG+  +++
Sbjct:    24 VITPAAITIYILFALFSFFDRPLRGFFAQIF---GIDIPGLGVLTVALLVPIVGMLATNF 80

Query:    85 LGASILSLGEWLIKKMPLISYIYSASKQ-ISAAISPDQKTKAFKEVAIIRHPRIGESAIG 143
             +G  IL   E L  K+P+   +Y  SKQ I   + P++   AFK V + R+P+ G  A+G
Sbjct:    81 IGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPERD--AFKSVVLARYPKDGSYALG 138

Query:   144 FITST 148
             FIT +
Sbjct:   139 FITGS 143

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0429 CHY_0429 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 45/125 (36%), Positives = 71/125 (56%)

Query:    29 ILLPIAITFYLTWWFIHFVD----GFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSW 84
             ++ P AIT Y+ +    F D    GFF+ I+   GI+I GLG +T    + +VG+  +++
Sbjct:    24 VITPAAITIYILFALFSFFDRPLRGFFAQIF---GIDIPGLGVLTVALLVPIVGMLATNF 80

Query:    85 LGASILSLGEWLIKKMPLISYIYSASKQ-ISAAISPDQKTKAFKEVAIIRHPRIGESAIG 143
             +G  IL   E L  K+P+   +Y  SKQ I   + P++   AFK V + R+P+ G  A+G
Sbjct:    81 IGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPERD--AFKSVVLARYPKDGSYALG 138

Query:   144 FITST 148
             FIT +
Sbjct:   139 FITGS 143

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z7T7 DET0989 "Putative uncharacterized protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 40/137 (29%), Positives = 73/137 (53%)

Query:    30 LLPIAITFYLTWWFIHFVDGFFSPIYAHLGIN--ISGLGFMTSITFIFLVGVFMSSWLGA 87
             +LPI     L  W  + +DG   P+      N    GLG + ++  I+LVG+ +S++ G 
Sbjct:    23 VLPIGAALGLLIWVFNIIDGLLKPVIEFF-FNWYFPGLGLLVTLVLIYLVGLILSNYFGK 81

Query:    88 SILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITS 147
              IL   + ++ K+P+ + +Y+++KQ+   +    K  +FKE  ++  PR G  ++ FIT+
Sbjct:    82 QILGWVDKILVKVPIFNQVYNSAKQVIETLGVSNKV-SFKEAVMVEFPRTGMHSLAFITN 140

Query:   148 TLILHGSSGQEELCCVF 164
                   S+G E+L  V+
Sbjct:   141 ETT--NSAG-EKLYLVY 154

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0989 DET_0989 "conserved hypothetical protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 40/137 (29%), Positives = 73/137 (53%)

Query:    30 LLPIAITFYLTWWFIHFVDGFFSPIYAHLGIN--ISGLGFMTSITFIFLVGVFMSSWLGA 87
             +LPI     L  W  + +DG   P+      N    GLG + ++  I+LVG+ +S++ G 
Sbjct:    23 VLPIGAALGLLIWVFNIIDGLLKPVIEFF-FNWYFPGLGLLVTLVLIYLVGLILSNYFGK 81

Query:    88 SILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITS 147
              IL   + ++ K+P+ + +Y+++KQ+   +    K  +FKE  ++  PR G  ++ FIT+
Sbjct:    82 QILGWVDKILVKVPIFNQVYNSAKQVIETLGVSNKV-SFKEAVMVEFPRTGMHSLAFITN 140

Query:   148 TLILHGSSGQEELCCVF 164
                   S+G E+L  V+
Sbjct:   141 ETT--NSAG-EKLYLVY 154

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83BF1 CBU_1559 "Hypothetical membrane spanning protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 44/148 (29%), Positives = 82/148 (55%)

Query:    24 LFCGVIL-LPIAITFYLTWWFIHFVDGFFSPIYAH------LGINISGLGFMTSITFIFL 76
             L  G+++ LPI +TF +  + +  +DG    +  H       G  I GLG + +I  IFL
Sbjct:    15 LIAGLLVWLPIWVTFIVIRFLVDLLDGTLKLLPYHYRPEQLFGHKIPGLGLVFTIIIIFL 74

Query:    77 VGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPR 136
              G+ +++++G  ++   E ++ ++PL+  IY+A KQ++ A    Q  ++F++V +I +PR
Sbjct:    75 TGLLVTNFVGRYLIGWWERILARIPLVRSIYTAVKQVTHAFVQPQG-QSFRKVVLIEYPR 133

Query:   137 IGESAIGFITSTLILHGSSGQEELCCVF 164
              G  +I F+TS     G   +++   VF
Sbjct:   134 KGLWSIAFVTSNNF-QGLPFEDDALAVF 160

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	LCV3	LCV3 (like cov 3); like cov 3 (LCV3); FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF502 (InterPro-IPR007462); BEST Arabidopsis thaliana protein match is- LCV1 (LIKE COV 1) (TAIR-AT2G20130.1); Has 1919 Blast hits to 1919 proteins in 363 species- Archae - 4; Bacteria - 686; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 1144 (source- NCBI BLink). (251 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G05657	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (137 aa)							•		0.873
	AT2G20150	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (90 aa)							•		0.716
	MYB59	MYB59 (MYB DOMAIN PROTEIN 59); DNA binding / transcription factor; Encodes a putative transcrip [...] (235 aa)							•		0.659
	GR-RBP8	GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding; Encodes a glycine-rich protei [...] (169 aa)							•		0.561
	AT2G20140	26S protease regulatory complex subunit 4, putative; 26S protease regulatory complex subunit 4, [...] (443 aa)							•		0.538
	AT2G20110	tesmin/TSO1-like CXC domain-containing protein; tesmin/TSO1-like CXC domain-containing protein; [...] (578 aa)							•		0.536
	DIN10	DIN10 (DARK INDUCIBLE 10); hydrolase, hydrolyzing O-glycosyl compounds; encodes a member of gly [...] (749 aa)							•		0.510
	MYB111	MYB111 (MYB DOMAIN PROTEIN 111); DNA binding / transcription factor; Encodes a putative transcr [...] (256 aa)							•		0.508
	HCS2	HCS2 (holocarboxylase synthetase 2); biotin-[acetyl-CoA-carboxylase] ligase/ catalytic; holocar [...] (329 aa)							•		0.508
	PHS1	PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1); phosphoprotein phosphatase/ protein tyrosine/serine/threon [...] (929 aa)							•		0.439

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
COG2928	222	COG2928, COG2928, Uncharacterized conserved protei	2e-24
pfam04367	108	pfam04367, DUF502, Protein of unknown function (DU	2e-23

>gnl|CDD|225480 COG2928, COG2928, Uncharacterized conserved protein [Function unknown]

 Score = 93.5 bits (233), Expect = 2e-24
 Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 8/127 (6%)

Query: 28  VILLPIAITFYLTWWFIHFVDGFFSP-------IYAHLGINISGLGFMTSITFIFLVGVF 80
           ++LLP+AIT ++  W    +D F  P          +   NI GLG + +I  IFL+G  
Sbjct: 15  LVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIILIFLLGFL 74

Query: 81  MSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGES 140
             + +G S+LSLG+ L++++PL+  IY ++KQ+   +  DQ + +FK+V ++  PR G  
Sbjct: 75  ARNMIGRSLLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQ-SGSFKQVVLVEFPRRGIW 133

Query: 141 AIGFITS 147
           AI F+T 
Sbjct: 134 AIAFVTG 140

Length = 222

>gnl|CDD|218047 pfam04367, DUF502, Protein of unknown function (DUF502)

 Score = 88.3 bits (220), Expect = 2e-23
 Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)

Query: 67  FMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAF 126
            + ++  IFLVG+   +++G  +LSLGE L+ ++PL+  IYS+ KQ+   +  D+K K+F
Sbjct: 1   LILTLLLIFLVGLLARNFIGRWLLSLGERLLNRIPLVRSIYSSVKQLVETLLGDKK-KSF 59

Query: 127 KEVAIIRHPRIGESAIGFITSTLILHGSSG-QEELCCVF 164
           ++V ++ +PR G  AIGF+T            E+L  VF
Sbjct: 60  RKVVLVEYPRPGLWAIGFVTGEDGGELPERLGEDLVAVF 98

Predicted to be an integral membrane protein. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
COG2928	222	Uncharacterized conserved protein [Function unknow	100.0
PF04367	108	DUF502: Protein of unknown function (DUF502); Inte	99.96
PRK09824	627	PTS system beta-glucoside-specific transporter sub	83.34
TIGR02120	399	GspF general secretion pathway protein F. This mem	82.7
PRK15350	88	type III secretion system protein SsaS; Provisiona	80.94
PRK05700	89	fliQ flagellar biosynthesis protein FliQ; Validate	80.66
TIGR01402	88	fliQ flagellar biosynthetic protein FliQ. This mod	80.61

>COG2928 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.2e-40  Score=266.92  Aligned_cols=149  Identities=34%  Similarity=0.643  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHhccccccccccceeehHHHHHHHHHHHHHHHHHHhhHhhh-------hhhccchhhHHHHHHHHHHHHHH
Q 039848            6 IRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIY-------AHLGINISGLGFMTSITFIFLVG   78 (164)
Q Consensus         6 ~~~~l~~~fl~Gl~~~~~~~~~lvllPl~iTi~vl~~l~~~v~~~~~p~~-------~~~~~~ipglgl~~~l~li~~vG   78 (164)
                      .+..+||+|+||+         ++++|+++|+|+++|+++++|+++.|.+       .+++.++||+|+++++++++++|
T Consensus         2 ~~~~lk~~fltGL---------lvllPlaiT~~vv~~i~~~l~~~~~~~lp~~~~~~~~~~~~i~~lg~il~iili~l~G   72 (222)
T COG2928           2 GAKRLKKYFLTGL---------LVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIILIFLLG   72 (222)
T ss_pred             hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhhhhccchhchhhcCchhhHHHHHHHHHHHHHHHH
Confidence            4677899999999         9999999999999999999999998854       23467799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCCCccCCCcCcEEEEEeCCCCeeEEEEEccccccC-CCCCC
Q 039848           79 VFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITSTLILH-GSSGQ  157 (164)
Q Consensus        79 ~l~~~~~g~~l~~~~e~ll~rIP~vk~IY~~iK~i~~~~~~~~~~~~f~~VVlVe~p~~g~~~iGFvT~~~~~~-~~~~~  157 (164)
                      ++++|.+||++++++|++++|||++|+||+++||++|++.+++ +++||+||+||||++|+|++||+|++...+ ++..+
T Consensus        73 ~l~~~~ig~~l~~~~d~~L~RiPlv~~IY~s~kqi~etll~~~-~~sfk~vvlVefP~~G~~~i~fvtg~~~~e~~~~~~  151 (222)
T COG2928          73 FLARNMIGRSLLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQ-SGSFKQVVLVEFPRRGIWAIAFVTGEKAGELKEKEG  151 (222)
T ss_pred             HHHHHHhhhHHHHHHHHHHccCccHHHHHHHHHHHHHHHHhcC-CccceeeEEEECCCCCcEEEEEeccCCCcchhcccC
Confidence            9999999999999999999999999999999999999999874 568999999999999999999999998764 34566


Q ss_pred             CCeeeeC
Q 039848          158 EELCCVF  164 (164)
Q Consensus       158 ~~~v~Vy  164 (164)
                      +|+++||
T Consensus       152 ~~~v~Vf  158 (222)
T COG2928         152 RPMVAVF  158 (222)
T ss_pred             CceEEEE
Confidence            7999998

>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins

Probab=99.96  E-value=9.6e-29  Score=182.05  Aligned_cols=96  Identities=33%  Similarity=0.593  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCCCccCCCcCcEEEEEeCCCCeeEEEEEcc
Q 039848           68 MTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPLISYIYSASKQISAAISPDQKTKAFKEVAIIRHPRIGESAIGFITS  147 (164)
Q Consensus        68 ~~~l~li~~vG~l~~~~~g~~l~~~~e~ll~rIP~vk~IY~~iK~i~~~~~~~~~~~~f~~VVlVe~p~~g~~~iGFvT~  147 (164)
                      ++++++|+++|+++++++|+|+++++|+++.|||+||+||+++||+++++++++ +++|++||+||||++|+|++||+|+
T Consensus         2 l~~l~~i~~iG~l~~~~~g~~l~~~~e~ll~riP~v~~iY~~~k~~~~~~~~~~-~~~f~~vVlV~~p~~g~~~igFvT~   80 (108)
T PF04367_consen    2 LILLLLIFLIGLLARNYFGKWLLNWLERLLQRIPLVKSIYSSIKQLVESFSGDK-KKSFKKVVLVEFPRPGMYVIGFVTG   80 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhhcc-cccCCeEEEEEecCCCcEEEEEEec
Confidence            577899999999999999999999999999999999999999999999999985 4559999999999999999999999


Q ss_pred             ccccC-CCCCCCCeeeeC
Q 039848          148 TLILH-GSSGQEELCCVF  164 (164)
Q Consensus       148 ~~~~~-~~~~~~~~v~Vy  164 (164)
                      ++.++ ....++|+++||
T Consensus        81 ~~~~~~~~~~~~~~v~Vf   98 (108)
T PF04367_consen   81 EDPGELPGKTGEEMVAVF   98 (108)
T ss_pred             cCcchhhccCCCCEEEEE
Confidence            98753 334456999997

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=83.34  E-value=15  Score=34.81  Aligned_cols=85  Identities=16%  Similarity=0.305  Sum_probs=60.7

Q ss_pred             ehHHHHHHHHHHHHHHHHHHhhHhhhhhhccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-hHHH
Q 039848           30 LLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTS-ITFIFLVGVFMSSWLGASILSLGEWLIKKMPLI-SYIY  107 (164)
Q Consensus        30 llPl~iTi~vl~~l~~~v~~~~~p~~~~~~~~ipglgl~~~-l~li~~vG~l~~~~~g~~l~~~~e~ll~rIP~v-k~IY  107 (164)
                      ++|+.++.|+..++-++++......++.  .-.|-+.++++ .+.++++|=+.. +++..+-..+..+.+.-|.+ ..++
T Consensus       219 ViPiil~v~~~s~iEk~l~K~iP~~l~~--i~~P~ltlli~~pl~l~viGPig~-~i~~~l~~~i~~l~~~~~~i~g~i~  295 (627)
T PRK09824        219 VIPIIFSAWLCSILERRLNAWLPSAIKN--FFTPLLCLMVIVPLTFLLIGPLAT-WLSELLAAGYQWLYQAVPAFAGAVM  295 (627)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhhchHHHHHHH
Confidence            8999999999999999999998776664  34566666554 455666776665 57777777777777766644 3477


Q ss_pred             HHHHHHHHHh
Q 039848          108 SASKQISAAI  117 (164)
Q Consensus       108 ~~iK~i~~~~  117 (164)
                      .++-|.+=.+
T Consensus       296 g~~~~~lV~~  305 (627)
T PRK09824        296 GAFWQVFVIF  305 (627)
T ss_pred             HHHHHHHHHh
Confidence            7777755443

>TIGR02120 GspF general secretion pathway protein F

Probab=82.70  E-value=16  Score=31.89  Aligned_cols=23  Identities=9%  Similarity=0.109  Sum_probs=18.5

Q ss_pred             HHHHHHHHHhhhcchhhHHHHHH
Q 039848           88 SILSLGEWLIKKMPLISYIYSAS  110 (164)
Q Consensus        88 ~l~~~~e~ll~rIP~vk~IY~~i  110 (164)
                      +.-...|+++.|+|+++++|...
T Consensus       242 ~~r~~~~~~l~kiP~~g~~~~~~  264 (399)
T TIGR02120       242 AFRLRFDRRLLRLPVIGRLVRGL  264 (399)
T ss_pred             HHHHHHHHHHhcccchHHHHHHH
Confidence            34457899999999999998754

This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.

>PRK15350 type III secretion system protein SsaS; Provisional

Probab=80.94  E-value=18  Score=25.83  Aligned_cols=80  Identities=11%  Similarity=0.179  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhccccccccccceeehHHHHHHHHHHHHHHHHHHhhHhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 039848            7 RSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSWLG   86 (164)
Q Consensus         7 ~~~l~~~fl~Gl~~~~~~~~~lvllPl~iTi~vl~~l~~~v~~~~~p~~~~~~~~ipglgl~~~l~li~~vG~l~~~~~g   86 (164)
                      -...++.+...+         .+..|+.+...++.-+.+.+...-+=- +      .-+.++-=++.++++=.+...|..
T Consensus         7 ~~l~~~al~~~l---------~ls~P~L~~alvVGlvIsi~QA~TQIQ-E------qTLsFvPKliav~~~l~~~gpWm~   70 (88)
T PRK15350          7 TQFVTQLLWIVL---------FTSMPVVLVASVVGVIVSLVQALTQIQ-D------QTLQFMIKLLAIAITLMVSYPWLS   70 (88)
T ss_pred             HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677777         889999998888777766554432100 0      112222222223333334445666


Q ss_pred             HHHHHHHHHHhhhcch
Q 039848           87 ASILSLGEWLIKKMPL  102 (164)
Q Consensus        87 ~~l~~~~e~ll~rIP~  102 (164)
                      +.+.++.+++++++|-
T Consensus        71 ~~l~~ft~~if~~i~~   86 (88)
T PRK15350         71 GILLNYTRQIMLRIGE   86 (88)
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            7889999999999984

>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated

Probab=80.66  E-value=18  Score=25.79  Aligned_cols=80  Identities=11%  Similarity=0.222  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhccccccccccceeehHHHHHHHHHHHHHHHHHHhhHhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 039848            7 RSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSWLG   86 (164)
Q Consensus         7 ~~~l~~~fl~Gl~~~~~~~~~lvllPl~iTi~vl~~l~~~v~~~~~p~~~~~~~~ipglgl~~~l~li~~vG~l~~~~~g   86 (164)
                      -...|+.+...+         .+..|..+...++.-+.+.+...-+=- +      .-++++-=++.++++=.+.-.|.+
T Consensus         7 ~~l~~~al~~~l---------~ls~P~l~~alvVGlvIsi~QA~TQIq-E------qTLsFvPKliav~~~l~~~g~Wm~   70 (89)
T PRK05700          7 MDLFREAMKVAL---------MLAAPLLLVALVVGLVVSIFQAATQIN-E------QTLSFIPKILAVLLTLIIAGPWML   70 (89)
T ss_pred             HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHhHHHHHHHHHHHHHHHHHHH
Confidence            345566777777         888999998888777666555432100 0      112222222223333344456677


Q ss_pred             HHHHHHHHHHhhhcch
Q 039848           87 ASILSLGEWLIKKMPL  102 (164)
Q Consensus        87 ~~l~~~~e~ll~rIP~  102 (164)
                      +.+.++.+++++++|-
T Consensus        71 ~~l~~f~~~if~~i~~   86 (89)
T PRK05700         71 NTLLDYTRTLFSNIPT   86 (89)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7899999999999996

>TIGR01402 fliQ flagellar biosynthetic protein FliQ

Probab=80.61  E-value=18  Score=25.76  Aligned_cols=81  Identities=12%  Similarity=0.219  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhccccccccccceeehHHHHHHHHHHHHHHHHHHhhHhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 039848            7 RSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGINISGLGFMTSITFIFLVGVFMSSWLG   86 (164)
Q Consensus         7 ~~~l~~~fl~Gl~~~~~~~~~lvllPl~iTi~vl~~l~~~v~~~~~p~~~~~~~~ipglgl~~~l~li~~vG~l~~~~~g   86 (164)
                      -...++.+...+         .+..|..+.-.++.-+.+.+...-+=     ..  .-+.++-=++.++++-.+.-.|.+
T Consensus         7 ~~l~~~al~~~l---------~~s~P~l~~alvVGlvIsi~QA~TQI-----qE--qTLsFvPKliav~~~l~~~gpWm~   70 (88)
T TIGR01402         7 LDLGREAIWLTL---------LLSAPVLLVALVVGLVISIFQAATQI-----QE--QTLSFIPKIIAILLALALLGPWML   70 (88)
T ss_pred             HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHhHHHHHHHHHHHHHHHHHHH
Confidence            344566777777         88899998887777766655443210     00  112222222333333344556677


Q ss_pred             HHHHHHHHHHhhhcchh
Q 039848           87 ASILSLGEWLIKKMPLI  103 (164)
Q Consensus        87 ~~l~~~~e~ll~rIP~v  103 (164)
                      +.+.++.+++++++|-+
T Consensus        71 ~~l~~f~~~~f~~i~~~   87 (88)
T TIGR01402        71 TKLLDFTREIFQRIPQG   87 (88)
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            78999999999999963

This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 21/155 (13%), Positives = 41/155 (26%), Gaps = 45/155 (29%)

Query: 2   LSKVIRSWAWKKFMTGCDNLLTLFCGVILLPIAITFYLTWWFIHFVDGFFSPIYAHLGIN 61
           L  V  + AW  F   C  LLT            T +         D   +    H+ ++
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLT------------TRF-----KQVTDFLSAATTTHISLD 292

Query: 62  ISGLGFMTSITFIFLVGVFMSSWLGASILSLGEWLIKKMPL-ISYI-------------- 106
              +             +    +L      L   ++   P  +S I              
Sbjct: 293 HHSMTLTPDEV----KSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 107 -YSASKQISAAIS-------PDQKTKAFKEVAIIR 133
            +    +++  I        P +  K F  +++  
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00