Citrus Sinensis ID: 039894

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MIFTKTLLILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKKRTSYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEcccEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHcccccccccccccccEEEcccccHcccccccccccccEccccEEEccccccccccccccccccccEEcccccccc
Coil and Loop (DISEMBL)
MIFTKTLLILLLAIILVLHNVVSATTTVVHVEeenqnhdadhyeedqdhdsfedqsisSGRSLLQKKRTSYKTLRLtcdkfpricyfegspgsscckKKCVELLKDrmncgkcgkkckyneiccngkcvnpsfnrrhcggcnnscsngefCVLGLCNYA
Flexible Loop (DISEMBL)
MIFTKTLLILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEdqsissgrsllqkkrtsyktlrltcdkFPRIcyfegspgssccKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNPSFNRRHCGGcnnscsngefCVLGLCNYA
Low Complexity Region (SEG)
MIFTKTllilllaiilvlHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKKRTSYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNcgkcgkkckYNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA
Disordered region (IsUnstruct)
*IFTKTLLILLLAIILVLHNVVSATTTVVHV**************************************SYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNY*
Disordered Region (DISOPRED)
***TKTLLILLLAIILVLHNVVSATTTVV**************************************RTSYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA
Disordered Region (DISEMBL)
MIFTKTLLILLLAIILVLHNVVSATTTVVHVEEENQNHDA*******************GRSLLQKKRTSYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA
Disordered Region (DISPRO)
MIFTKTLLILLLAIILVLHNVVSAT**********************************GRSLLQ****SYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIFTKTLLILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKKRTSYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
255577139	158	conserved hypothetical protein [Ricinus	0.930	0.936	0.554	5e-41
255577133	156	conserved hypothetical protein [Ricinus	0.981	1.0	0.522	2e-39
255577129	153	conserved hypothetical protein [Ricinus	0.836	0.869	0.562	5e-37
255577131	161	conserved hypothetical protein [Ricinus	0.943	0.931	0.506	4e-36
449454905	157	PREDICTED: uncharacterized protein LOC10	0.987	1.0	0.484	2e-32
255554805	159	conserved hypothetical protein [Ricinus	0.943	0.943	0.437	3e-31
224118058	155	predicted protein [Populus trichocarpa]	0.930	0.954	0.448	8e-31
449454907	156	PREDICTED: uncharacterized protein LOC10	0.968	0.987	0.428	1e-30
449503391	156	PREDICTED: uncharacterized protein LOC10	0.968	0.987	0.428	1e-30
224118062	152	predicted protein [Populus trichocarpa]	0.918	0.960	0.470	2e-30

>gi|255577139|ref|XP_002529453.1| conserved hypothetical protein [Ricinus communis] gi|223531069|gb|EEF32919.1| conserved hypothetical protein [Ricinus communis]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 9/157 (5%)

Query: 11  LLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHD----SFEDQ----SISSGRS 62
           LL I L+L  V++   +V  +  E +  D +  +ED D+D    SF+++    S    R 
Sbjct: 3   LLKIFLILVLVMALLLSVAALPLEQEQEDLEPEQEDLDYDLTEQSFDEETEFNSEHGFRH 62

Query: 63  LLQKKRTSYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEI 122
           LL +K+   K  R++C+KFPRIC+ +GSPG  CCKKKCV +L DR+NCG CGKKCKYN+I
Sbjct: 63  LLAQKKVK-KARRVSCNKFPRICHAKGSPGPYCCKKKCVNVLTDRLNCGACGKKCKYNQI 121

Query: 123 CCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA 159
           CCNGKCVNPSFNRRHCGGCNN C++GEFC  GLCNYA
Sbjct: 122 CCNGKCVNPSFNRRHCGGCNNRCNSGEFCAFGLCNYA 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577133|ref|XP_002529450.1| conserved hypothetical protein [Ricinus communis] gi|223531066|gb|EEF32916.1| conserved hypothetical protein [Ricinus communis]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 101/159 (63%), Gaps = 3/159 (1%)

Query: 1   MIFTKTLLILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSG 60
           M   K  LIL+LA+ L+L     +T   +  E++ +  D D+    +  +         G
Sbjct: 1   MKLLKFFLILVLAMALLL---PISTALPLEQEQDREREDIDYDLTKRSLNETTQFDPEHG 57

Query: 61  RSLLQKKRTSYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYN 120
                 +    K  R  CDKFPRICY +GSPG  CCKKKCV++L DR NCG CGKKCKYN
Sbjct: 58  SRHFPARNKFRKACRARCDKFPRICYAKGSPGPYCCKKKCVDVLTDRFNCGACGKKCKYN 117

Query: 121 EICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA 159
           +ICCNGKCVNPSFNRRHCGGCN+ C+NGEFC  GLCNYA
Sbjct: 118 QICCNGKCVNPSFNRRHCGGCNHRCNNGEFCAFGLCNYA 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577129|ref|XP_002529448.1| conserved hypothetical protein [Ricinus communis] gi|223531064|gb|EEF32914.1| conserved hypothetical protein [Ricinus communis]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 96/137 (70%), Gaps = 4/137 (2%)

Query: 25  TTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISS--GRSLLQKKRTSYKTLRLTCDKFP 82
           T   +  E++ +  D D+   +Q +D   + S     GR L QKK    K  R+ C+KFP
Sbjct: 19  TVAALPTEQDQEQEDTDYDLSEQSYDEANEFSSEHRFGRILAQKKLR--KARRVRCNKFP 76

Query: 83  RICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNPSFNRRHCGGCN 142
           RIC+ +GSPG  CCKKKCV +L DR+NCG CGKKCKYN++CCNGKC+NP FNRRHCGGCN
Sbjct: 77  RICHAKGSPGPYCCKKKCVNVLTDRLNCGACGKKCKYNQMCCNGKCINPFFNRRHCGGCN 136

Query: 143 NSCSNGEFCVLGLCNYA 159
           N C++GEFC  GLCNYA
Sbjct: 137 NRCNSGEFCAFGLCNYA 153

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577131|ref|XP_002529449.1| conserved hypothetical protein [Ricinus communis] gi|223531065|gb|EEF32915.1| conserved hypothetical protein [Ricinus communis]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 100/150 (66%)

Query: 10  LLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKKRT 69
           +++A++L +  +          ++E +  D D+   +Q  D   + S   G   L  ++ 
Sbjct: 12  VVMALVLSVAALPLEQEQEQESDQEQEPEDIDYDLTEQSFDEATEFSSEYGFRRLLAQKK 71

Query: 70  SYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCV 129
             KT R+ C+KFPRIC+ +GSPG  CC KKCV +L DR+NCG CGKKCKYN+ICCNGKCV
Sbjct: 72  LRKTRRVRCNKFPRICHAKGSPGPYCCSKKCVNVLTDRLNCGACGKKCKYNQICCNGKCV 131

Query: 130 NPSFNRRHCGGCNNSCSNGEFCVLGLCNYA 159
           NPSFN+RHCGGCNN C+NG FC  GLCNYA
Sbjct: 132 NPSFNKRHCGGCNNRCNNGGFCAFGLCNYA 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454905|ref|XP_004145194.1| PREDICTED: uncharacterized protein LOC101214260 [Cucumis sativus] gi|449472078|ref|XP_004153490.1| PREDICTED: uncharacterized protein LOC101209985 [Cucumis sativus] gi|449503393|ref|XP_004161980.1| PREDICTED: uncharacterized protein LOC101227666 [Cucumis sativus]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/159 (48%), Positives = 94/159 (59%), Gaps = 2/159 (1%)

Query: 1   MIFTKTLLILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSG 60
           M   K  L L+LAII   H    A     + +E   N   D           ED  +   
Sbjct: 1   MKIVKLFLFLVLAIIFS-HYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLA 59

Query: 61  RSLLQKKRTSYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYN 120
           R LL   ++  K L LTC+K+PR+C  +GS G  CCKKKCV + +DR NCG+CGKKCKY+
Sbjct: 60  RRLLFPFQSLQKGL-LTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGRCGKKCKYS 118

Query: 121 EICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA 159
           +ICC GKCVNP FNR+HCGGCN  CS G FCV G+C YA
Sbjct: 119 KICCKGKCVNPLFNRKHCGGCNIECSKGSFCVYGMCGYA 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554805|ref|XP_002518440.1| conserved hypothetical protein [Ricinus communis] gi|223542285|gb|EEF43827.1| conserved hypothetical protein [Ricinus communis]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 92/153 (60%), Gaps = 3/153 (1%)

Query: 7   LLILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQK 66
           LL +L+A    + +  + T     +E ++ + D D    +QD ++    S+      L +
Sbjct: 10  LLAMLMAFAASVLSSTAPTEEETFLENDDGSTDDDTPWLNQDRETTLTSSLRGANRFLAQ 69

Query: 67  KRTSYKTLRLTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNG 126
           K +      +TCDK+PR+C  +GSPG  CCKKKCV ++ D +NCG CGKKCKY EICC G
Sbjct: 70  KTSQ---AVMTCDKYPRVCRAKGSPGPDCCKKKCVNVMTDGLNCGNCGKKCKYPEICCKG 126

Query: 127 KCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA 159
            CVNP  N +HCGGCNN C  G  CV G+C+YA
Sbjct: 127 GCVNPMSNNKHCGGCNNKCKKGNKCVYGMCSYA 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118058|ref|XP_002331547.1| predicted protein [Populus trichocarpa] gi|222873771|gb|EEF10902.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 98/154 (63%), Gaps = 6/154 (3%)

Query: 8   LILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKK 67
           +  +LAII+ L   ++AT +    EE+  + D    E++++ D    +S  +  SL    
Sbjct: 6   IFFVLAIIMALAVSLTATPS----EEDQSSLDFSENEDEENFDLPWLESQETTSSLRGAN 61

Query: 68  RTSYKTLR--LTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCN 125
           R   + +R  +TCDK+PR C  +GSPG  CCKKKCV ++ DR+NCG CGKKCKY EICC 
Sbjct: 62  RFLAQKIRAVMTCDKYPRACRAKGSPGPDCCKKKCVNVMTDRLNCGMCGKKCKYPEICCK 121

Query: 126 GKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA 159
           G+CVNP  N+++CGGC+N C  G  C  G+C+YA
Sbjct: 122 GQCVNPMSNKKNCGGCSNKCKKGSKCQYGMCSYA 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454907|ref|XP_004145195.1| PREDICTED: uncharacterized protein LOC101214497 [Cucumis sativus] gi|449472075|ref|XP_004153489.1| PREDICTED: uncharacterized protein LOC101209742 [Cucumis sativus]

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 103/161 (63%), Gaps = 7/161 (4%)

Query: 1   MIFTKTLLILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSG 60
           M F+K L  L +A+I+V H V  A+   +  +E   + D + +++    +  ++    S 
Sbjct: 1   MKFSKPLF-LWVALIIVSHYVAHASIVEMSNKENVTSLDDETFDQLSPVEETKNSPSGSV 59

Query: 61  RSLLQKKRTSYKTLR--LTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCK 118
           R LL     ++++L+  +TC+K+PR+C  +GS G  CC +KCV +  DR NCG CG KCK
Sbjct: 60  RGLL----FNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCGMCGNKCK 115

Query: 119 YNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA 159
           Y+ ICCNG+CVNP FN++HCGGCNN CS G +C  G+C+YA
Sbjct: 116 YSRICCNGRCVNPMFNKKHCGGCNNECSKGNYCAFGMCDYA 156

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503391|ref|XP_004161979.1| PREDICTED: uncharacterized protein LOC101227436 [Cucumis sativus]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 103/161 (63%), Gaps = 7/161 (4%)

Query: 1   MIFTKTLLILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSG 60
           M F+K L  L +A+I+V H V  A+   +  +E   + D + +++    +  ++    S 
Sbjct: 1   MKFSKPLF-LWVALIIVSHYVAHASIVEMSNKENVTSLDDETFDQLSPVEETKNSPSGSV 59

Query: 61  RSLLQKKRTSYKTLR--LTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCK 118
           R LL     ++++L+  +TC+K+PR+C  +GS G  CC +KCV +  DR NCG CG KCK
Sbjct: 60  RGLL----FNFESLQKGVTCNKYPRVCRAKGSKGPDCCNRKCVNVEMDRNNCGMCGNKCK 115

Query: 119 YNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA 159
           Y+ ICCNG+CVNP FN++HCGGCNN CS G +C  G+C+YA
Sbjct: 116 YSRICCNGRCVNPMFNKKHCGGCNNECSKGNYCAFGMCDYA 156

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118062|ref|XP_002331548.1| predicted protein [Populus trichocarpa] gi|222873772|gb|EEF10903.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 98/153 (64%), Gaps = 7/153 (4%)

Query: 8   LILLLAIILVLHNVVSATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSGRSLLQKK 67
           +  LLA+++ L  ++SATT     EEE+     +  EE+ D    E+Q  +S  SL    
Sbjct: 6   IFFLLAMLMSLAIILSATTP----EEESFLDFDNEDEENSDLPQLENQETTS--SLRGAN 59

Query: 68  RTSYKTLR-LTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNG 126
           R   +T   +TCDK+PR C  +GSPG  CCKKKCV ++ D++NCG CGKKCKY EICC G
Sbjct: 60  RFLAQTRAVMTCDKYPRACRAKGSPGPDCCKKKCVNVMTDKLNCGMCGKKCKYPEICCKG 119

Query: 127 KCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNYA 159
           +CVNP  N+++CGGC+N C  G  C  G+C+YA
Sbjct: 120 QCVNPMSNKKNCGGCSNKCKKGSTCQYGMCSYA 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:504956323	140	AT1G11925 "AT1G11925" [Arabido	0.528	0.6	0.511	2e-24
TAIR|locus:2116407	152	AT4G26880 "AT4G26880" [Arabido	0.710	0.743	0.355	1.2e-17
TAIR|locus:2015863	154	AT1G50720 "AT1G50720" [Arabido	0.515	0.532	0.452	1.6e-17
TAIR|locus:2161605	163	AT5G55110 "AT5G55110" [Arabido	0.515	0.503	0.413	4.7e-16
TAIR|locus:2037037	168	GRI "GRIM REAPER" [Arabidopsis	0.855	0.809	0.309	4.9e-14
TAIR|locus:2008006	174	AT1G50650 "AT1G50650" [Arabido	0.484	0.442	0.333	6.6e-10

TAIR|locus:504956323 AT1G11925 "AT1G11925" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 43/84 (51%), Positives = 57/84 (67%)

Query:    76 LTCDKFPRICYFEGSPGSSCCKKKCVELLKDRMNXXXXXXXXXYNEICCNGKCVNPSFNR 135
             LTCDK  ++C  +GSPG +CC+KKCV+L  +++N         Y+E+CCNG CVNP F+R
Sbjct:    57 LTCDKSSKVCRLKGSPGRNCCRKKCVDLRTNKLNCGRCGKSCQYSEVCCNGYCVNPMFDR 116

Query:   136 RHCGGCNNSCSNGEFCVLGLCNYA 159
             RHCGGC   C  G  C  G+C+YA
Sbjct:   117 RHCGGCFKKCKKGRSCAYGMCSYA 140

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116407 AT4G26880 "AT4G26880" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 43/121 (35%), Positives = 65/121 (53%)

Query:    47 QDHDSFEDQSISSGRS--LLQKKRTSYKTLRLT--CDKFPRICYFEGSPGSS----CCKK 98
             +++ SF+  S  + R   LL +K    +       C++ P IC   G  GS+    CC  
Sbjct:    32 REYTSFDAPSTPTIRPNRLLAQKEVGERNPNAADHCNRNPEICTPYGGGGSNSTMTCCNN 91

Query:    99 KCVELLKDRMNXXXXXXXXXYNEICCNGKCVNPSFNRRHCGGCNNSCSNGEFCVLGLCNY 158
             KC+++  D  N         +++ CC G+CV  ++++RHCG CN+ C  GEFCV GLCNY
Sbjct:    92 KCIDVSSDDNNCGACKNKCKFSQTCCRGQCVYVAYDKRHCGQCNHPCELGEFCVYGLCNY 151

Query:   159 A 159
             A
Sbjct:   152 A 152

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015863 AT1G50720 "AT1G50720" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 38/84 (45%), Positives = 50/84 (59%)

Query:    78 CDKFPRICYFEGSPGSS--CCKKKCVELLKDRMNXXXXXXXXXYNEICCNGKCVNPSFNR 135
             C+K   IC  +G   S+  CC  KCV+L  D  N         + + CC G+CV  ++++
Sbjct:    71 CNKEEEICKSQGMYNSTMACCSNKCVDLAYDNDNCGACKNQCKFTQTCCRGECVYLAYDK 130

Query:   136 RHCGGCNNSCSNGEFCVLGLCNYA 159
             RHCG CN+SC  GEFCV GLCNYA
Sbjct:   131 RHCGECNHSCLVGEFCVYGLCNYA 154

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161605 AT5G55110 "AT5G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 36/87 (41%), Positives = 50/87 (57%)

Query:    78 CDKFPRIC----YFEGSPGS-SCCKKKCVELLKDRMNXXXXXXXXXYNEICCNGKCVNPS 132
             C+K   IC    Y  G+  + +CC  KC++L  D  N         + + CC G+CV  +
Sbjct:    77 CNKDNEICSSSDYSTGANATMACCNNKCMDLSTDDKNCGLCKNKCKFGQTCCRGQCVYVA 136

Query:   133 FNRRHCGGCNNSCSNGEFCVLGLCNYA 159
             +++RHCG CN+ C  GEFCV GLCNYA
Sbjct:   137 YDKRHCGECNHRCDLGEFCVYGLCNYA 163

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037037 GRI "GRIM REAPER" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 44/142 (30%), Positives = 67/142 (47%)

Query:    23 SATTTVVHVEEENQNHDADHYEEDQDHDSFEDQSISSG-RSLLQKKRTSYKTLRLTCDKF 81
             S + +V+  E  +Q  D ++Y  D+      + +ISS  R L+   +   K +R   + +
Sbjct:    28 SKSNSVLADEVVDQEDDPEYYILDETPSILSNVTISSKTRLLVSHYKKIKKGMRCHVESY 87

Query:    82 PRICY-FEGSPGSS---CCKKKCVELLKDRMNXXXXXXXXXYNEICCNGKCVNPSFNRRH 137
               IC   + + G+S   CCKK C  +L DR N         + + CC G C   +FN  H
Sbjct:    88 -NICNGVKANKGTSLLHCCKKHCRNVLGDRNNCGRCGHKCGFGQRCCGGVCTYVNFNPNH 146

Query:   138 CGGCNNSCSNGEFCVLGLCNYA 159
             CG C   C++G  C  G C YA
Sbjct:   147 CGKCTRKCASGVKCEYGYCGYA 168

GO:0005576 "extracellular region" evidence=ISM

GO:0005615 "extracellular space" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010193 "response to ozone" evidence=IMP

GO:0010942 "positive regulation of cell death" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0080141 "regulation of jasmonic acid biosynthetic process" evidence=IMP

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IMP

TAIR|locus:2008006 AT1G50650 "AT1G50650" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 27/81 (33%), Positives = 41/81 (50%)

Query:    82 PRICYFEGSPGSS---CCKKKCVELLKDRMNXXXXXXXXXYNEICCNGKCVNPSFNRRHC 138
             P IC   G P  +   CC+ +CV++L D  +         +   CC+G CV+ + +  +C
Sbjct:    59 PWICKRSG-PSEARMRCCRNQCVDVLSDPNHCRFCFKSCRFALSCCDGDCVDTNTDPSNC 117

Query:   139 GGCNNSCSNGEFCVLGLCNYA 159
             G C N C +G  C  G+C YA
Sbjct:   118 GQCGNECESGAPCEFGMCGYA 138


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      159       138   0.00091  102 3  11 22  0.42    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  158 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.39u 0.12s 18.51t   Elapsed:  00:00:01
  Total cpu time:  18.39u 0.12s 18.51t   Elapsed:  00:00:01
  Start:  Thu May  9 16:42:00 2013   End:  Thu May  9 16:42:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_166000014 hypothetical protein (155 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
pfam04885	136	pfam04885, Stig1, Stigma-specific protein, Stig1	1e-31

>gnl|CDD|218310 pfam04885, Stig1, Stigma-specific protein, Stig1

 Score =  109 bits (275), Expect = 1e-31
 Identities = 49/88 (55%), Positives = 62/88 (70%), Gaps = 2/88 (2%)

Query: 74  LRLTCDKFPRIC--YFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNP 131
           L   C+K P IC      SPG +CC+ KCV++  DR NCG CGKKCK+ + CC G+CV+ 
Sbjct: 49  LADHCNKDPEICKTSGGLSPGMTCCRNKCVDVSTDRNNCGSCGKKCKFGQTCCGGQCVDL 108

Query: 132 SFNRRHCGGCNNSCSNGEFCVLGLCNYA 159
           +F+RR+CG CNN C +GE CV GLCNYA
Sbjct: 109 NFDRRNCGKCNNKCKSGEKCVFGLCNYA 136

This family represents the Stig1 cysteine rich plant protein. The STIG1 gene is developmentally regulated and expressed specifically in the stigmatic secretory zone. Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PF04885	136	Stig1: Stigma-specific protein, Stig1; InterPro: I	100.0
PF04885	136	Stig1: Stigma-specific protein, Stig1; InterPro: I	99.46
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	90.08
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	86.94
PF02950	75	Conotoxin: Conotoxin; InterPro: IPR004214 Cone sna	86.85
PF15240	179	Pro-rich: Proline-rich	82.03

>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein

Probab=100.00  E-value=2e-37  Score=242.47  Aligned_cols=92  Identities=50%  Similarity=1.195  Sum_probs=88.4

Q ss_pred             ccCccccccccccCCccccccccccccccCCc--cccccccccceeccccccCcccccCCCCCCCCcccCCcccCCCcCC
Q 039894           58 SSGRSLLQKKRTSYKTLRLTCDKFPRICYFEG--SPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVNPSFNR  135 (159)
Q Consensus        58 ~~sRfLa~~~~~~~~~~~~~C~k~~~IC~~~~--~~G~~CC~g~Cvdl~tD~~NCG~Cg~~C~~g~~CC~G~Cvdl~tD~  135 (159)
                      +.+|||++          ++|+++|+||..++  ++|+.||+++|||+.+|++|||+||++|++|++||+|+|||+.+|+
T Consensus        43 ~~~~~~~~----------~~C~~~~~iC~~~~~~~~~~~CC~~~Cvdv~~d~~nCG~Cg~~C~~g~~cC~G~Cvd~~~d~  112 (136)
T PF04885_consen   43 RPSRFLAH----------DTCNKDPWICSAKGKCSPGPTCCNNKCVDVSSDRNNCGACGNKCPYGQTCCGGQCVDLNSDP  112 (136)
T ss_pred             Cccccccc----------cccCCCchhhcCCCCCCCCCcccCCcCCccCCCccccHhhcCCCCCCceecCCEeECCCCCc
Confidence            67777755          79999999999998  9999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCCCccCCceecCC
Q 039894          136 RHCGGCNNSCSNGEFCVLGLCNYA  159 (159)
Q Consensus       136 ~nCG~Cg~~C~~G~~C~~G~C~YA  159 (159)
                      +|||+||++|+.|+.|++|+|.||
T Consensus       113 ~~CG~Cg~~C~~G~~C~~G~C~ya  136 (136)
T PF04885_consen  113 RHCGACGNKCPPGQKCVYGMCGYA  136 (136)
T ss_pred             cccCCCCCcCCCcCCcCCeECCCC
Confidence            999999999999999999999998

The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.

>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein

Probab=99.46  E-value=1.2e-13  Score=108.65  Aligned_cols=47  Identities=36%  Similarity=0.868  Sum_probs=45.0

Q ss_pred             cccCCccccccccccceeccccccCcccccCCCCCCCCcccCCcccC
Q 039894           84 ICYFEGSPGSSCCKKKCVELLKDRMNCGKCGKKCKYNEICCNGKCVN  130 (159)
Q Consensus        84 IC~~~~~~G~~CC~g~Cvdl~tD~~NCG~Cg~~C~~g~~CC~G~Cvd  130 (159)
                      .|..++++|++||+|.|||+.+|+.|||+||++|+.|+.|-+|+|.+
T Consensus        89 ~Cg~~C~~g~~cC~G~Cvd~~~d~~~CG~Cg~~C~~G~~C~~G~C~y  135 (136)
T PF04885_consen   89 ACGNKCPYGQTCCGGQCVDLNSDPRHCGACGNKCPPGQKCVYGMCGY  135 (136)
T ss_pred             hhcCCCCCCceecCCEeECCCCCccccCCCCCcCCCcCCcCCeECCC
Confidence            68888999999999999999999999999999999999999999975

The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=90.08  E-value=0.41  Score=35.69  Aligned_cols=18  Identities=28%  Similarity=0.416  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 039894            6 TLLILLLAIILVLHNVVS   23 (159)
Q Consensus         6 ~~~i~~la~~~~l~~~ls   23 (159)
                      .|.+|||+++||+.+.+|
T Consensus         3 SK~~llL~l~LA~lLlis   20 (95)
T PF07172_consen    3 SKAFLLLGLLLAALLLIS   20 (95)
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            344555555555444443

Some of them may be involved in resistance to environmental stress [].

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=86.94  E-value=0.92  Score=33.81  Aligned_cols=24  Identities=38%  Similarity=0.411  Sum_probs=17.6

Q ss_pred             hHH-HHHHHHHHHHHHHHHHhhccc
Q 039894            3 FTK-TLLILLLAIILVLHNVVSATT   26 (159)
Q Consensus         3 ~~~-~~~i~~la~~~~l~~~ls~~~   26 (159)
                      -|+ +++.++|||+|.++...|+..
T Consensus         3 SK~~llL~l~LA~lLlisSevaa~~   27 (95)
T PF07172_consen    3 SKAFLLLGLLLAALLLISSEVAARE   27 (95)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhHH
Confidence            344 455577889999998888865

Some of them may be involved in resistance to environmental stress [].

>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors

Probab=86.85  E-value=0.4  Score=32.69  Aligned_cols=22  Identities=27%  Similarity=0.717  Sum_probs=13.6

Q ss_pred             ccccccccccCCcccccccccccee
Q 039894           77 TCDKFPRICYFEGSPGSSCCKKKCV  101 (159)
Q Consensus        77 ~C~k~~~IC~~~~~~G~~CC~g~Cv  101 (159)
                      .|......|   ...+..||.+.|.
T Consensus        49 ~C~~~g~~C---~~~~~~CC~~~C~   70 (75)
T PF02950_consen   49 RCTPPGSYC---CKRNSECCSGSCN   70 (75)
T ss_dssp             -EB-TTSB----BTTTTCBSSSCEE
T ss_pred             ccCCCCCcC---CCCCCCCCCCccC
Confidence            466666677   2467789998886

Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....

>PF15240 Pro-rich: Proline-rich

Probab=82.03  E-value=1.2  Score=37.03  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHhhccc
Q 039894            6 TLLILLLAIILVLHNVVSATT   26 (159)
Q Consensus         6 ~~~i~~la~~~~l~~~ls~~~   26 (159)
                      |++|||.|.||||+.+-+.-.
T Consensus         1 MLlVLLSvALLALSSAQ~~dE   21 (179)
T PF15240_consen    1 MLLVLLSVALLALSSAQSTDE   21 (179)
T ss_pred             ChhHHHHHHHHHhhhcccccc
Confidence            678888888999887766544

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00