Citrus Sinensis ID: 040022

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
MDALACSASNLSPLLGGATNATAAAEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHDDLDSTQKGGFMMA
cccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccEEEcccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccc
ccccHccHHHHHHHHcccccHHHHHHHHHHHHcccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccEEEEEEccccccccccccccHHHccccEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHHccHHHHHHccccccccccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHcccHHEEcccccccccccccccc
mdalacsasnlspllggatnaTAAAEYICGRFeavsnkfvdtgyaidNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAfafgnpsngfigkhffgleafpspsfdygyFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVshwfwssdgwasptrtdnnllfgsgvidfagsGVVHMVGGIAGLWgaliegprigkfdhndrpatmrghsgTLVVLGTFLLWFgwygfnpgSFVYILKTYgesgsyygqwSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFaaitggcsvvdpWAAIICGFVAAWILIGCNKLaekfkyddpleaaqlhggcgawGVIFTGLFakesyvnevypgkpgrpyglfmgggGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRistdeemagmdltshgglayayhddldstqkggfmma
MDALACSASNLSPLLGGATNATAAAEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHDDLDSTQKGGFMMA
MDALACSASNLSPllggatnataaaEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATgglfyylfgfafafgNPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWafaiaaagitsgsiaERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTlfwllnklkllRISTDEEMAGMDLTSHGGLAYAYHDDLDSTQKGGFMMA
*************LLGGATNATAAAEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYH**************
****A**ASNLSPLLGGATNATAAAEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHDDL***********
MDALACSASNLSPLLGGATNATAAAEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHDDLDSTQKGGFMMA
*****CSASNLSPLLGGATNATAAAEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHDD************
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDALACSASNLSPLLGGATNATAAAEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHDDLDSTQKGGFMMA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query490 2.2.26 [Sep-21-2011]
O04161514 Ammonium transporter 1 me N/A no 0.995 0.949 0.777 0.0
P54144501 Ammonium transporter 1 me yes no 0.973 0.952 0.791 0.0
P58905488 Ammonium transporter 1 me N/A no 0.961 0.965 0.802 0.0
Q9SVT8504 Ammonium transporter 1 me no no 0.971 0.944 0.804 0.0
Q9SQH9498 Ammonium transporter 1 me no no 0.977 0.961 0.763 0.0
Q9LK16496 Putative ammonium transpo no no 0.971 0.959 0.777 0.0
Q6K9G1496 Ammonium transporter 1 me yes no 0.969 0.957 0.753 0.0
Q9ZPJ8514 Ammonium transporter 1 me no no 0.930 0.887 0.770 0.0
Q7XQ12498 Ammonium transporter 1 me no no 0.967 0.951 0.746 0.0
Q6K9G3498 Ammonium transporter 1 me no no 0.953 0.937 0.732 0.0
>sp|O04161|AMT12_SOLLC Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1 Back     alignment and function desciption
 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/490 (77%), Positives = 420/490 (85%), Gaps = 2/490 (0%)

Query: 2   DALACSASNLSPLLGGATNATAAAEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFVM 61
            A+ CSA+ L P LG + NATAAAE+IC RF AVS    +T YA+D TYLLFSAYLVF M
Sbjct: 3   SAMTCSAAELFPHLGSSANATAAAEFICSRFSAVSEYLTNTTYAVDTTYLLFSAYLVFAM 62

Query: 62  QLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLE 121
           QLGFAMLCAGSVRAKNTMNIMLTNVLDAA GG  YYLFGFAFAFG PSNGFIGKHFFGL+
Sbjct: 63  QLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGFSYYLFGFAFAFGAPSNGFIGKHFFGLK 122

Query: 122 AFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWS 181
            FPS +FDY YFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTG VYPIVSHWFWS
Sbjct: 123 EFPSQAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWS 182

Query: 182 SDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATM 241
            DGWAS ++TD NLL   GVIDFAGSGVVHMVGGIAGLWGA IEGPRIG+FD + R   +
Sbjct: 183 GDGWASASKTDGNLLLRFGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRSGRSVAL 242

Query: 242 RGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGES--GSYYGQWSAIGRTAITTTLAG 299
           RGHS +LVVLGTFLLWFGWYGFNPGSF+ ILK+Y  +  G+YYGQWSAIGRTA+TTTLAG
Sbjct: 243 RGHSASLVVLGTFLLWFGWYGFNPGSFLTILKSYDHTIRGTYYGQWSAIGRTAVTTTLAG 302

Query: 300 CSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGC 359
           C+AALTTLF KRL+  HWNV DVCNGLLGGFAAIT GC+VV+PWAAI+CGF+AAW+LIG 
Sbjct: 303 CTAALTTLFCKRLLVAHWNVVDVCNGLLGGFAAITSGCAVVEPWAAIVCGFIAAWVLIGF 362

Query: 360 NKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGK 419
           N LA K KYDDPLEAAQLHGGCG+WG+IFTGLFAK+ YVNEVYPG P RPYGLFMGGGGK
Sbjct: 363 NALAAKLKYDDPLEAAQLHGGCGSWGIIFTGLFAKKEYVNEVYPGFPNRPYGLFMGGGGK 422

Query: 420 LLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHDDL 479
           LL A ++Q++VI GWVSVTMG LF+LL+K KLLRIS D+E AGMDLT HGG AY YHD+ 
Sbjct: 423 LLGAQVIQVVVIIGWVSVTMGPLFYLLHKFKLLRISRDDETAGMDLTRHGGFAYIYHDED 482

Query: 480 DSTQKGGFMM 489
           + +   GF M
Sbjct: 483 EGSSMPGFKM 492
Ammonium transporter probably involved in ammonium uptake from the soil.
Solanum lycopersicum (taxid: 4081)
>sp|P54144|AMT11_ARATH Ammonium transporter 1 member 1 OS=Arabidopsis thaliana GN=AMT1-1 PE=1 SV=1 Back     alignment and function description
>sp|P58905|AMT11_SOLLC Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVT8|AMT14_ARATH Ammonium transporter 1 member 4 OS=Arabidopsis thaliana GN=AMT1-4 PE=1 SV=1 Back     alignment and function description
>sp|Q9SQH9|AMT13_ARATH Ammonium transporter 1 member 3 OS=Arabidopsis thaliana GN=AMT1-3 PE=1 SV=2 Back     alignment and function description
>sp|Q9LK16|AMT15_ARATH Putative ammonium transporter 1 member 5 OS=Arabidopsis thaliana GN=AMT1-5 PE=3 SV=1 Back     alignment and function description
>sp|Q6K9G1|AMT12_ORYSJ Ammonium transporter 1 member 2 OS=Oryza sativa subsp. japonica GN=AMT1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPJ8|AMT12_ARATH Ammonium transporter 1 member 2 OS=Arabidopsis thaliana GN=AMT1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q7XQ12|AMT11_ORYSJ Ammonium transporter 1 member 1 OS=Oryza sativa subsp. japonica GN=AMT1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q6K9G3|AMT13_ORYSJ Ammonium transporter 1 member 3 OS=Oryza sativa subsp. japonica GN=AMT1-3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
397788018490 AMT1;3 [Citrus trifoliata] 1.0 1.0 0.989 0.0
224065519489 ammonium transporter [Populus trichocarp 0.977 0.979 0.848 0.0
224070027495 ammonium transporter [Populus trichocarp 0.997 0.987 0.867 0.0
255551295486 ammonium transporter, putative [Ricinus 0.961 0.969 0.862 0.0
46409004506 high affinity ammonium transporter [Lotu 0.981 0.950 0.828 0.0
397788016505 AMT1;2 [Citrus trifoliata] 0.995 0.966 0.791 0.0
224145861506 ammonium transporter [Populus trichocarp 0.991 0.960 0.779 0.0
449468716534 PREDICTED: ammonium transporter 1 member 0.985 0.904 0.812 0.0
357510259490 Ammonium transporter 1 member [Medicago 0.983 0.983 0.805 0.0
10637893502 ammonium transporter (AMT1.1) [Lotus jap 0.979 0.956 0.793 0.0
>gi|397788018|gb|AFO66662.1| AMT1;3 [Citrus trifoliata] Back     alignment and taxonomy information
 Score =  983 bits (2541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/490 (98%), Positives = 487/490 (99%)

Query: 1   MDALACSASNLSPLLGGATNATAAAEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFV 60
           MDALACSASNLSPLLGGA NATAAAEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFV
Sbjct: 1   MDALACSASNLSPLLGGAANATAAAEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVFV 60

Query: 61  MQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGL 120
           MQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGL
Sbjct: 61  MQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGL 120

Query: 121 EAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFW 180
           EAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFW
Sbjct: 121 EAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFW 180

Query: 181 SSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPAT 240
           SSDGWASP RTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPAT
Sbjct: 181 SSDGWASPARTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPAT 240

Query: 241 MRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGC 300
           MRGHSGTLV+LGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGC
Sbjct: 241 MRGHSGTLVILGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGC 300

Query: 301 SAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCN 360
           +AALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCN
Sbjct: 301 AAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCN 360

Query: 361 KLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKL 420
           KLAEKFKYDDPLEAAQLHGGCG WGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKL
Sbjct: 361 KLAEKFKYDDPLEAAQLHGGCGVWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKL 420

Query: 421 LAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHDDLD 480
           LAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHDDLD
Sbjct: 421 LAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHDDLD 480

Query: 481 STQKGGFMMA 490
           STQKGGFMMA
Sbjct: 481 STQKGGFMMA 490

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224065519|ref|XP_002301837.1| ammonium transporter [Populus trichocarpa] gi|222843563|gb|EEE81110.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224070027|ref|XP_002303104.1| ammonium transporter [Populus trichocarpa] gi|222844830|gb|EEE82377.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551295|ref|XP_002516694.1| ammonium transporter, putative [Ricinus communis] gi|223544189|gb|EEF45713.1| ammonium transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|46409004|emb|CAE01484.1| high affinity ammonium transporter [Lotus japonicus] Back     alignment and taxonomy information
>gi|397788016|gb|AFO66661.1| AMT1;2 [Citrus trifoliata] Back     alignment and taxonomy information
>gi|224145861|ref|XP_002325790.1| ammonium transporter [Populus trichocarpa] gi|222862665|gb|EEF00172.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449468716|ref|XP_004152067.1| PREDICTED: ammonium transporter 1 member 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357510259|ref|XP_003625418.1| Ammonium transporter 1 member [Medicago truncatula] gi|355500433|gb|AES81636.1| Ammonium transporter 1 member [Medicago truncatula] Back     alignment and taxonomy information
>gi|10637893|emb|CAC10555.1| ammonium transporter (AMT1.1) [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
TAIR|locus:2117758504 AMT1;4 "ammonium transporter 1 0.969 0.942 0.711 3.2e-191
UNIPROTKB|O04161514 AMT1-2 "Ammonium transporter 1 0.993 0.947 0.689 1.1e-188
TAIR|locus:2140877501 AMT1;1 "ammonium transporter 1 0.973 0.952 0.698 2.7e-187
UNIPROTKB|P58905488 AMT1-1 "Ammonium transporter 1 0.959 0.963 0.712 2.4e-186
TAIR|locus:2010791514 AMT1;2 "ammonium transporter 1 0.977 0.931 0.674 1.6e-180
TAIR|locus:2087168496 AMT1;5 "ammonium transporter 1 0.971 0.959 0.683 3.4e-180
TAIR|locus:2087173498 AMT1;3 "ammonium transporter 1 0.977 0.961 0.672 3e-179
UNIPROTKB|Q7XQ12498 AMT1-1 "Ammonium transporter 1 0.969 0.953 0.659 4.6e-176
UNIPROTKB|Q6K9G3498 AMT1-3 "Ammonium transporter 1 0.953 0.937 0.642 9.7e-167
UNIPROTKB|Q9FVN0460 AMT1-3 "Ammonium transporter 1 0.867 0.923 0.613 7.5e-144
TAIR|locus:2117758 AMT1;4 "ammonium transporter 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1853 (657.3 bits), Expect = 3.2e-191, P = 3.2e-191
 Identities = 342/481 (71%), Positives = 383/481 (79%)

Query:     3 ALACSASNLSPXXXX---XXXXXXXXEYICGRFEAVSNKFVDTGYAIDNTYLLFSAYLVF 59
             AL+CSAS+L P               EYICGRF+ V+ KF D  YAIDNTYLLFSAYLVF
Sbjct:     4 ALSCSASDLIPLLSGGANATAAAAAAEYICGRFDTVAGKFTDAAYAIDNTYLLFSAYLVF 63

Query:    60 VMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXXXNPSNGFIGKHFFG 119
              MQLGFAMLCAGSVRAKNTMNIMLTNV+DAA                +PSNGFIGKHFFG
Sbjct:    64 AMQLGFAMLCAGSVRAKNTMNIMLTNVIDAAAGGLFYYLFGFAFAFGSPSNGFIGKHFFG 123

Query:   120 LEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGLVYPIVSHWF 179
             +  FP P+FDY YFLYQW               ERTQFVAYLIYSSFLTGLVYPIVSHWF
Sbjct:   124 MYDFPQPTFDYPYFLYQWTFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWF 183

Query:   180 WSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPA 239
             WSSDGWASP R++N LLF SGVIDFAGSGVVHMVGGIAGLWGALIEGPRIG+F    +P 
Sbjct:   184 WSSDGWASPARSEN-LLFQSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFGVGGKPV 242

Query:   240 TMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGES--GSYYGQWSAIGRTAITTTL 297
             T+RGHS TLVVLGTFLLWFGWYGFNPGSF  I K YGE+   S+YGQWSA+GRTA+TTTL
Sbjct:   243 TLRGHSATLVVLGTFLLWFGWYGFNPGSFATIFKAYGETPGSSFYGQWSAVGRTAVTTTL 302

Query:   298 AGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILI 357
             AGC+AALTTLFGKRLI G+WNVTDVCNGLLGGFAAIT GCSVV+PWAA++CGFVAAW+L+
Sbjct:   303 AGCTAALTTLFGKRLIDGYWNVTDVCNGLLGGFAAITSGCSVVEPWAALVCGFVAAWVLM 362

Query:   358 GCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGG 417
             GCN+LAEK ++DDPLEAAQLHGGCGAWG+IFTGLFA++ Y+ E++ G P RP+GL MGGG
Sbjct:   363 GCNRLAEKLQFDDPLEAAQLHGGCGAWGIIFTGLFAEKRYIAEIFGGDPNRPFGLLMGGG 422

Query:   418 GKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTDEEMAGMDLTSHGGLAYAYHD 477
             G+LLAAH+VQILVITGWVSVTMGT           RI  ++E+AG+D TSHGGLAY Y +
Sbjct:   423 GRLLAAHVVQILVITGWVSVTMGTLFFILHKLKLLRIPAEDEIAGVDPTSHGGLAYMYTE 482

Query:   478 D 478
             D
Sbjct:   483 D 483
GO:0005576 "extracellular region" evidence=ISM
GO:0006810 "transport" evidence=ISS
GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS;IDA
GO:0015695 "organic cation transport" evidence=ISS;IMP;IDA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0015398 "high affinity secondary active ammonium transmembrane transporter activity" evidence=IMP
GO:0072488 "ammonium transmembrane transport" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|O04161 AMT1-2 "Ammonium transporter 1 member 2" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2140877 AMT1;1 "ammonium transporter 1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P58905 AMT1-1 "Ammonium transporter 1 member 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2010791 AMT1;2 "ammonium transporter 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087168 AMT1;5 "ammonium transporter 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087173 AMT1;3 "ammonium transporter 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XQ12 AMT1-1 "Ammonium transporter 1 member 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6K9G3 AMT1-3 "Ammonium transporter 1 member 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FVN0 AMT1-3 "Ammonium transporter 1 member 3" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9BLG3AMT2_DICDINo assigned EC number0.39810.84080.9559yesno
Q9SVT8AMT14_ARATHNo assigned EC number0.80490.97140.9444nono
Q9SQH9AMT13_ARATHNo assigned EC number0.76340.97750.9618nono
Q9FVN0AMT13_SOLLCNo assigned EC number0.67940.87750.9347N/Ano
O04161AMT12_SOLLCNo assigned EC number0.77750.99590.9494N/Ano
Q7XQ12AMT11_ORYSJNo assigned EC number0.74640.96730.9518nono
P58905AMT11_SOLLCNo assigned EC number0.80250.96120.9651N/Ano
Q9LK16AMT15_ARATHNo assigned EC number0.77700.97140.9596nono
Q9ZPJ8AMT12_ARATHNo assigned EC number0.77000.93060.8871nono
P54144AMT11_ARATHNo assigned EC number0.79160.97340.9520yesno
Q6K9G3AMT13_ORYSJNo assigned EC number0.73260.95300.9377nono
Q6K9G1AMT12_ORYSJNo assigned EC number0.75350.96930.9576yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
TIGR00836403 TIGR00836, amt, ammonium transporter 1e-150
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 1e-133
COG0004409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 1e-101
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 9e-69
PRK10666428 PRK10666, PRK10666, ammonium transporter; Provisio 8e-40
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information 
 Score =  434 bits (1118), Expect = e-150
 Identities = 194/437 (44%), Positives = 244/437 (55%), Gaps = 45/437 (10%)

Query: 48  NTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFG- 106
             +LL +A LVF MQ GFA+L AG VR+KN +NIM+ N+LD A G L ++LFG++ AFG 
Sbjct: 1   TAWLLIAAALVFFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGE 60

Query: 107 -NPSNGFIGKHFFGL--------EAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQF 157
            NP NGFIG   FGL         +      D  +FL+Q  FA  AA I SG++AER +F
Sbjct: 61  DNPINGFIGTGGFGLKNFLYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKF 120

Query: 158 VAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIA 217
            AYL++S   T LVYP V+HW W   GW          L+  GV+DFAG GVVH+VGG+A
Sbjct: 121 SAYLLFSVLWTTLVYPPVAHWVWGGGGW----------LYKLGVLDFAGGGVVHIVGGVA 170

Query: 218 GLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGE 277
           GL  AL+ GPRIG+F    RP  +R H+  LVVLGTF+LWFGW+GFN GS          
Sbjct: 171 GLAAALVLGPRIGRF---PRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSA--------- 218

Query: 278 SGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGC 337
             +  G        A+ T LA  +  LT L    L  G   +   CNG+L G  AIT GC
Sbjct: 219 -LAANG---TAAYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGC 274

Query: 338 SVVDPWAAIICGFVA-AWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKES 396
            VV PW AII G VA     +  +KL +K K DDPL+A  +HG  G WG+I TGLFA   
Sbjct: 275 GVVTPWGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPK 334

Query: 397 YVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRIST 456
                     G   G  +GG GK L   ++ I  I  W  V    +  +L+K   LR+S 
Sbjct: 335 VG--------GVGTGGLLGGNGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSE 386

Query: 457 DEEMAGMDLTSHGGLAY 473
           +EE  G+DL  HG  AY
Sbjct: 387 EEEKIGLDLAEHGEFAY 403

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 490
KOG0682500 consensus Ammonia permease [Inorganic ion transpor 100.0
COG0004409 AmtB Ammonia permease [Inorganic ion transport and 100.0
TIGR00836403 amt ammonium transporter. The mechanism of energy 100.0
TIGR03644404 marine_trans_1 probable ammonium transporter, mari 100.0
PRK10666428 ammonium transporter; Provisional 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 100.0
KOG3796442 consensus Ammonium transporter RHBG [Intracellular 100.0
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-113  Score=892.51  Aligned_cols=430  Identities=51%  Similarity=0.857  Sum_probs=389.2

Q ss_pred             HhHhhhhhhhhhccc-cccccccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040022           24 AAEYICGRFEAVSNK-FVDTGYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFA  102 (490)
Q Consensus        24 ~~~~~~~~~~~~~~~-~~~~~~~~d~~w~l~~~~lV~~M~~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~  102 (490)
                      .++.++.+......+ .++..+..|+.|++.++++||.|||||+|||+|+||+||++|+|+||++|++++.++||++||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~y~~dn~~~l~sss~lvF~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~Gys   87 (500)
T KOG0682|consen    8 TATYIRGAGGNVLTKFTPNAYDLDNTAWLLSSSFLVFTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYS   87 (500)
T ss_pred             ccccccccccccccccCcchhcCCchhhHHHHHHHHHHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            444555433332222 3334556788899999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCC-CCccccccc-ccccCCCCC------CcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccc
Q 040022          103 FAFGNP-SNGFIGKHF-FGLEAFPSP------SFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPI  174 (490)
Q Consensus       103 lafG~~-~~~fiG~~~-f~~~~~~~~------~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv  174 (490)
                      |+||+. .|+|||... |.+.++..+      .+++.+++||++||+++++|++|+++||+|+++|++|+++|.++||||
T Consensus        88 lAFg~~~~n~FiG~~~~F~~~~~~g~~~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~tlVY~~  167 (500)
T KOG0682|consen   88 LAFGDSPSNGFIGKLDFFGLRNVSGDPSSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTTLVYCP  167 (500)
T ss_pred             eeccCCCCCCceeeccccccccCCCCcCCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHhcccc
Confidence            999987 799999975 776655311      248999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeCCCCcCCCCCCCCcccccCccccccCcceehhhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHH
Q 040022          175 VSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTF  254 (490)
Q Consensus       175 ~ahWvW~~~GWL~~~~~~~~~~~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~  254 (490)
                      ++||+|+|+||++          ++|++|||||++||++||++||++++++|||++||+  ++..++||||+++++||++
T Consensus       168 ~a~W~W~~~Gw~~----------~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~--~~~~~~~~hsv~~v~LGt~  235 (500)
T KOG0682|consen  168 VAHWVWSPNGWLY----------KLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFF--GKAIALRPHSVTLVVLGTF  235 (500)
T ss_pred             cceeeecCCceee----------ecceeeccCCceeEecccHHHHHHHHHhCCccCccc--ccccccCCCchhHHHHHHH
Confidence            9999999999998          489999999999999999999999999999999984  3556789999999999999


Q ss_pred             HHHHHhhccccccchhhhhccCCCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhCcceeecccccccccccccc
Q 040022          255 LLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAIT  334 (490)
Q Consensus       255 lLw~GW~gFN~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~LaGLVaIT  334 (490)
                      ||||||++||+||.+.++..           .. +|+++||+||++.|++||++++|+++|||++..+|||+|+||||||
T Consensus       236 lLWfGWl~FN~GS~~~i~~~-----------~~-~~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT  303 (500)
T KOG0682|consen  236 LLWFGWLGFNGGSFYAINLR-----------SW-ARAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAIT  303 (500)
T ss_pred             HHHHHHHccCCcccccccch-----------hH-HHHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhc
Confidence            99999999999999988521           11 3999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHhhhhHHHHHHHHhhhhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCccccc
Q 040022          335 GGCSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFM  414 (490)
Q Consensus       335 a~a~~v~pw~A~iiG~iag~~~~~~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~  414 (490)
                      |+|++++||+|+++|++++++|+.+.++++|+|||||+|++++||+||+||+|++|+|+.+++....++.. .+..|+++
T Consensus       304 ~gc~~v~pWaAiviG~va~~~~~~~~kL~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~-~~~~G~~~  382 (500)
T KOG0682|consen  304 PGCGVVEPWAAIVIGAVAGLVCNAANKLKERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTI-ARISGLWM  382 (500)
T ss_pred             CCCcccCcHHHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCc-cCCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999988654433322 35679999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCCChHHHHcCCCccccccccccCCCc
Q 040022          415 GGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKL-LRISTDEEMAGMDLTSHGGLAYAYHDD  478 (490)
Q Consensus       415 gg~~~ql~~Ql~g~~vi~~w~~~~~~ii~~ilk~~~~-LRv~~e~E~~GlD~~~hg~~ay~~~~~  478 (490)
                      +++++||++|+++++++.+|+++++.++++++||+++ |||++|||+.|+|..||||.+|++.+.
T Consensus       383 ~~~~kqLg~Qla~i~ai~~ws~~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~~~  447 (500)
T KOG0682|consen  383 GHGFKQLGYQLAGILAIAAWSAVVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYHES  447 (500)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchhhc
Confidence            9999999999999999999999999999999999999 999999999999999999999987554

>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
3c1h_A424 Substrate Binding, Deprotonation And Selectivity At 6e-28
2nuu_A415 Regulating The Escherichia Coli Ammonia Channel: Th 8e-28
2ns1_A412 Crystal Structure Of The E. Coli Ammonia Channel Am 8e-28
1xqe_A418 The Mechanism Of Ammonia Transport Based On The Cry 1e-27
2nmr_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-27
2b2f_A399 Ammonium Transporter Amt-1 From A.Fulgidus (Native) 3e-27
3c1j_A424 Substrate Binding, Deprotonation And Selectivity At 5e-27
3c1i_A424 Substrate Binding, Deprotonation And Selectivity At 8e-27
2now_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 8e-27
2npd_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-26
2npg_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-26
2npc_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-26
2npe_A424 An Unusual Twin-his Arrangement In The Pore Of Ammo 1e-26
2npk_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-25
1u77_A385 Crystal Structure Of Ammonia Channel Amtb From E. C 4e-21
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure 
Iteration: 1

 Score =  122 bits (305), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 170/436 (38%), Gaps = 49/436 (11%)
Query: 47  DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
           DN +++    LV  M + G A+   G +R KN ++ MLT V                   
Sbjct: 9   DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
               N F G           L A     + Y +  +Q                ER +F A
Sbjct: 68  FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSAACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
            LI+      L Y  ++H  W              LL   G +DFAG  VVH+   IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
            GA + G R+G      +P     H+  +V  GT +L+ GW+GFN GS            
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
              G  + I   A + T +A  +A L  +FG+  + G  ++   C+G + G   +T  C 
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
            +    A+I G VA    L G   L    + DDP +   +HG CG  G I TG+FA  S 
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
                 G  G   G+ M   G  L   +  I +   W  V               R+  +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
           +E  G+D+ SHG  AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The Crystal Structure Of The Amtb-glnk Complex Length = 415 Back     alignment and structure
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk Length = 412 Back     alignment and structure
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal Structure Of Amtb Of E. Coli. Length = 418 Back     alignment and structure
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399 Back     alignment and structure
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli Length = 385 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
3b9w_A407 Ammonium transporter family; membrane protein, amm 1e-79
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 2e-78
1u7g_A385 Probable ammonium transporter; right handed helica 2e-67
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 5e-58
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
 Score =  252 bits (646), Expect = 1e-79
 Identities = 77/424 (18%), Positives = 128/424 (30%), Gaps = 67/424 (15%)

Query: 70  AGSVRAKN-TMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEAFPSPSF 128
           A  V   N ++NI+   ++      +F   +GF+   G       G   + L        
Sbjct: 11  ARLVAQYNYSINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLRANGIFG 70

Query: 129 DYGY-----FLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSD 183
                     +    FA+A   I  G++  R +   Y + + F+   VY +        +
Sbjct: 71  HALTPHSVDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLALFIVP-VYLLNEWLVLD-N 128

Query: 184 GWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRG 243
                           G  D AGS  +H  G   GL  ++       +     +P     
Sbjct: 129 AS----------GLTEGFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRA----QPIESDA 174

Query: 244 HSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAA 303
            S    +LG+ +LW  W  F                     +  + +T + T LA C A 
Sbjct: 175 TSDRFSMLGSMVLWLFWPSFATAI---------------VPFEQMPQTIVNTLLALCGAT 219

Query: 304 LTTLFGKRLIA-GHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGC--- 359
           L T F   L   G  ++ D+ N  L G  AI   C++V P  A + G +   I +     
Sbjct: 220 LATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVF 279

Query: 360 --NKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGG 417
               L  K K  D      LHG  G  G     L                          
Sbjct: 280 IQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIV------------------------ 315

Query: 418 GKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHD 477
             +  A +  I +      +       L+      + + ++    + L        A   
Sbjct: 316 PGIAVAQLTGIGITLALALIGGVIAGALIKLTGTTKQAYEDSHEFIHLAGPEDEHKAERL 375

Query: 478 DLDS 481
            L++
Sbjct: 376 VLEA 379
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 100.0
1u7g_A385 Probable ammonium transporter; right handed helica 100.0
3b9w_A407 Ammonium transporter family; membrane protein, amm 100.0
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 100.0
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
Probab=100.00  E-value=1e-109  Score=865.02  Aligned_cols=392  Identities=30%  Similarity=0.510  Sum_probs=363.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccc-ccccccC
Q 040022           44 YAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGK-HFFGLEA  122 (490)
Q Consensus        44 ~~~d~~w~l~~~~lV~~M~~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~-~~f~~~~  122 (490)
                      ++.|+.|+|+|++|||+|||||+|+|+|++|+||+.|+++||++++++++++||++||+++||++.++|||. ++|++.+
T Consensus         2 ~~~d~~w~l~~~~LV~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~~~   81 (399)
T 2b2h_A            2 SDGNVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALLSG   81 (399)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGGTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhccC
Confidence            467999999999999999999999999999999999999999999999999999999999999765789998 5666655


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccccCccc
Q 040022          123 FPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVI  202 (490)
Q Consensus       123 ~~~~~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~~lG~~  202 (490)
                      .+.  .++.+++||++||+++++|++||++||+|+.+|++|+++|++++|||++||+|+ +|||.          ++|++
T Consensus        82 ~~~--~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~----------~lG~~  148 (399)
T 2b2h_A           82 VKG--EDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLA----------KLGAL  148 (399)
T ss_dssp             CCT--HHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH----------HTTCC
T ss_pred             CCC--CchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHH----------hcCCc
Confidence            432  238899999999999999999999999999999999999999999999999999 89997          48999


Q ss_pred             cccCcceehhhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhccCCCCCCC
Q 040022          203 DFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYY  282 (490)
Q Consensus       203 DfaGs~vVH~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~~~~~~~~~  282 (490)
                      |||||+|||++||++||+++++||||++|.+     +++||||++++++|+++||+||||||+||++..+          
T Consensus       149 DFAGs~vVH~~gG~~aL~~a~~LG~R~g~~~-----~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~----------  213 (399)
T 2b2h_A          149 DFAGGMVVHISSGFAALAVAMTIGKRAGFEE-----YSIEPHSIPLTLIGAALLWFGWFGFNGGSALAAN----------  213 (399)
T ss_dssp             CSSCTTTTHHHHHHHHHHHHHHHCCCTTTTT-----SCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSS----------
T ss_pred             cccCCeEEEechhHHHHHHHHHcCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHhhcHHhhcccc----------
Confidence            9999999999999999999999999998632     4679999999999999999999999999988652          


Q ss_pred             CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhCcceeeccccccccccccccCCCCCCChhHHHHHHhhhhHHHHHHHHh
Q 040022          283 GQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKL  362 (490)
Q Consensus       283 ~~~~~~~~~~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG~iag~~~~~~~~l  362 (490)
                         ..++++++||++|+++|+++|+++++++ ||+|+..++||+|||||+|||+|++++||+|++||+++|++|+...++
T Consensus       214 ---~~a~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l  289 (399)
T 2b2h_A          214 ---DVAINAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDF  289 (399)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---chhhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence               3678999999999999999999999999 999999999999999999999999999999999999999999888899


Q ss_pred             hhhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040022          363 AEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTL  442 (490)
Q Consensus       363 ~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~gg~~~ql~~Ql~g~~vi~~w~~~~~~ii  442 (490)
                      ++|+|||||||++++||+||+||+|++|+|++++..    +     ..|++| ++.+|++.|++|++++++|+++.++++
T Consensus       290 ~~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~----g-----~~Gl~~-g~~~ql~~Ql~g~~~~~~~~~v~~~i~  359 (399)
T 2b2h_A          290 RIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVN----G-----YAGLLF-GNPQLLVSQLIAVASTTAYAFLVTLIL  359 (399)
T ss_dssp             HHHTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHH----S-----CCCGGG-TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCceeccchhhHHHHHHHHHHcccccc----C-----CCcccc-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999986531    1     137888 568999999999999999999999999


Q ss_pred             HHHHhhccccCCChHHHHcCCCccccccccccCCC
Q 040022          443 FWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHD  477 (490)
Q Consensus       443 ~~ilk~~~~LRv~~e~E~~GlD~~~hg~~ay~~~~  477 (490)
                      ++++|++.+||+++|||++|||.+||||++||++.
T Consensus       360 ~~il~~~~glRv~~e~E~~GlD~~~hg~~ay~~~~  394 (399)
T 2b2h_A          360 AKAVDAAVGLRVSSQEEYVGLDLSQHEEVAYTLEH  394 (399)
T ss_dssp             HHHHHHHTCSBCCHHHHHHCHHHHHHCCCSCC---
T ss_pred             HHHHHhcccCCCCHHHHHhCCCHHHhCcccCCccc
Confidence            99999999999999999999999999999999754
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 490
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 5e-52
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score =  178 bits (453), Expect = 5e-52
 Identities = 108/417 (25%), Positives = 172/417 (41%), Gaps = 45/417 (10%)

Query: 45  AIDNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAF 103
             DN +++    LV  M + G A+   G +R KN ++++    +  A   + + ++G++ 
Sbjct: 5   KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSL 64

Query: 104 AFGNPSNGFIGKHFFGLEAFPS-----PSFDYGYFLYQWAFAIAAAGITSGSIAERTQFV 158
           A G  +N F   ++  L+           + Y +  +Q +FA    G+  G++AER +F 
Sbjct: 65  ASGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFP 124

Query: 159 AYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAG 218
           A LI+      L Y  ++H  W     AS            G +DFAG  VVH+   IAG
Sbjct: 125 AVLIFVVVWLTLSYIPIAHMVWGGGLLAS-----------HGALDFAGGTVVHINAAIAG 173

Query: 219 LWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGES 278
           L GA + G R+G           + H+  +V  GT +L+ GW+GFN              
Sbjct: 174 LVGAYLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNA------------- 215

Query: 279 GSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
           GS            + T +A  +A L  +FG+  + G  ++   C+G + G   +T  C 
Sbjct: 216 GSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACG 275

Query: 339 VVDPWAAIICGFVAAWIL-IGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
            +    A+I G VA      G   L    + DDP +   +HG CG  G I TG+FA  S 
Sbjct: 276 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 335

Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRI 454
                    G          G  L   +  I +   W  V     + L +    LR+
Sbjct: 336 ---------GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 100.0
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.9e-93  Score=736.94  Aligned_cols=374  Identities=28%  Similarity=0.489  Sum_probs=337.3

Q ss_pred             ccccchhHHHHHHHHHHHHHH-HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccc-ccc
Q 040022           42 TGYAIDNTYLLFSAYLVFVMQ-LGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKH-FFG  119 (490)
Q Consensus        42 ~~~~~d~~w~l~~~~lV~~M~-~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~~-~f~  119 (490)
                      ..++.|++|+++|++||++|| |||+|+|+|++|+||++|+++||++|+++++++||++||+++||++ ++++|.. ++.
T Consensus         2 ~~d~~d~~~~l~~~~lV~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~-~~~~g~~~~~~   80 (383)
T d1u7ga_           2 VADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWLM   80 (383)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTGG
T ss_pred             CcCcccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeEEeEcCCC-CCcCCCcchhh
Confidence            356899999999999999998 8999999999999999999999999999999999999999999974 6677764 444


Q ss_pred             ccCCCCC-----CcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCc
Q 040022          120 LEAFPSP-----SFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNN  194 (490)
Q Consensus       120 ~~~~~~~-----~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~  194 (490)
                      +.+.+.+     .+++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+ +|||.       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw~-~g~l~-------  152 (383)
T d1u7ga_          81 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLA-------  152 (383)
T ss_dssp             GTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH-------
T ss_pred             ccCcccccccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccchHHheecC-CCccc-------
Confidence            4443322     1468899999999999999999999999999999999999999999999999997 79997       


Q ss_pred             ccccCccccccCcceehhhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhc
Q 040022          195 LLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKT  274 (490)
Q Consensus       195 ~~~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~  274 (490)
                         ++|++|||||+|||++||+++|++++++|||++|++     +++||||++++.+|+++||+||+|||+||+...+  
T Consensus       153 ---~lG~~DfaGs~vVH~~gG~~aL~~~~~lgpR~~~~~-----~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~--  222 (383)
T d1u7ga_         153 ---SHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGK-----EAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTAN--  222 (383)
T ss_dssp             ---HHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTC-----SSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSS--
T ss_pred             ---cCCceeccCceeeeecccHHHHHHHHhcCCcccccc-----cccccCChhhhhHHHHHHHHHHHHhccccccccc--
Confidence               589999999999999999999999999999999864     3578999999999999999999999999986542  


Q ss_pred             cCCCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhCcceeeccccccccccccccCCCCCCChhHHHHHHhhhhH
Q 040022          275 YGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAW  354 (490)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG~iag~  354 (490)
                                 ....++++||++|++++++++++.+++++||+|+.+++||.|+|||+|||+|++++||+|++||+++++
T Consensus       223 -----------~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~  291 (383)
T d1u7ga_         223 -----------EIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGL  291 (383)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred             -----------hHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccH
Confidence                       456789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-hhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCcccccCCchhHHHHHHHHHHHHHH
Q 040022          355 ILIGCNKLA-EKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITG  433 (490)
Q Consensus       355 ~~~~~~~l~-~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~gg~~~ql~~Ql~g~~vi~~  433 (490)
                      +++...+++ +|+|||||+|++++|++||+||+|++|+|++++.....+.      .+   ...++|+++|++|++++++
T Consensus       292 i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~~~~~g~~~~------~~---~~~~~ql~~Ql~g~~v~~~  362 (383)
T d1u7ga_         292 AGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFA------EG---VTMGHQLLVQLESIAITIV  362 (383)
T ss_dssp             HHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCCCC------TT---CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhcCccccccccc------cc---cchHHHHHHHHHHHHHHHH
Confidence            998777655 5799999999999999999999999999998763211110      01   1346899999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCC
Q 040022          434 WVSVTMGTLFWLLNKLKLLRI  454 (490)
Q Consensus       434 w~~~~~~ii~~ilk~~~~LRv  454 (490)
                      |++++++++++++|++.+|||
T Consensus       363 ~~~~~~~ii~~il~~~~gLRV  383 (383)
T d1u7ga_         363 WSGVVAFIGYKLADLTVGLRV  383 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTCSBC
T ss_pred             HHHHHHHHHHHHHHhCcCCcC
Confidence            999999999999999999997