Citrus Sinensis ID: 040090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MASQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMGHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTSS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHccHHHHHHHHcccccccccccccHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccEEcccccccccHHHHHHHHcccccccccHHHHHccccHHHcccccccccHHHcccccHHHccccccccccccccHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MASQQGRKELDTRArqgetvvpggtggksLEAQEHLAegrsrggqtrreQLGTegyqemghrggqmrreqmgsegyqemgrkgglstidksggeraaeegieideskyktss
Flexible Loop (DISEMBL)
masqqgrkeldtrarqgetvvpggtggkslEAQEHLaegrsrggqtrreqlgtegyqemghrggqMRREQMGSEGYqemgrkgglstidksggeraaeegieideskyktss
Low Complexity Region (SEG)
MASQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMGHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSggeraaeegieideSKYKTSS
Disordered region (IsUnstruct)
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Disordered Region (DISOPRED)
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Disordered Region (DISEMBL)
**************RQGETVVPGGTGGKSLEAQE**************EQLGTEGYQ***********************RKGGLSTIDKSGGERAAEEGIEI*********
Disordered Region (DISPRO)
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Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMGHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q02400	133	Late embryogenesis abunda	N/A	no	1.0	0.842	0.676	3e-38
Q07187	152	Em-like protein GEA1 OS=A	yes	no	0.964	0.710	0.590	6e-35
Q05191	153	Late embryogenesis abunda	N/A	no	1.0	0.732	0.588	1e-34
Q02973	92	Em-like protein GEA6 OS=A	no	no	0.821	1.0	0.651	4e-31
P17639	92	EMB-1 protein OS=Daucus c	N/A	no	0.803	0.978	0.672	5e-31
P42755	93	Em protein H5 OS=Triticum	N/A	no	0.821	0.989	0.672	6e-30
P46520	95	Embryonic abundant protei	yes	no	0.821	0.968	0.669	8e-30
Q08000	93	Em protein H2 OS=Triticum	N/A	no	0.821	0.989	0.663	2e-29
P04568	93	Em protein OS=Triticum ae	N/A	no	0.821	0.989	0.654	3e-29
Q05190	93	Late embryogenesis abunda	N/A	no	0.821	0.989	0.654	3e-29

>sp|Q02400|LE193_HORVU Late embryogenesis abundant protein B19.3 OS=Hordeum vulgare GN=B19.3 PE=2 SV=1

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/133 (67%), Positives = 102/133 (76%), Gaps = 21/133 (15%)

Query: 1   MAS-QQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQ-------------- 45
           MAS QQ R ELD  AR+GETVVPGGTGGK+LEAQEHLAEGRSRGGQ              
Sbjct: 1   MASGQQERSELDRMAREGETVVPGGTGGKTLEAQEHLAEGRSRGGQTRKDQLGEEGYREM 60

Query: 46  ------TRREQLGTEGYQEMGHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEE 99
                 TR+EQLG EGY+EMGH+GG+ R+EQMG EGY EMGRKGGLST+++SGGERAA E
Sbjct: 61  GHKGGETRKEQLGEEGYREMGHKGGETRKEQMGEEGYHEMGRKGGLSTMEESGGERAARE 120

Query: 100 GIEIDESKYKTSS 112
           GI+IDESK+KT S
Sbjct: 121 GIDIDESKFKTKS 133

Lea proteins are late embryonic proteins abundant in higher plant seed embryos.
Hordeum vulgare (taxid: 4513)

>sp|Q07187|EM1_ARATH Em-like protein GEA1 OS=Arabidopsis thaliana GN=EM1 PE=1 SV=1

 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 101/149 (67%), Gaps = 41/149 (27%)

Query: 1   MASQQ-GRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQE- 58
           MAS+Q  R+ELD +A+QGETVVPGGTGG SLEAQEHLAEGRS+GGQTR+EQLG EGYQE 
Sbjct: 1   MASKQLSREELDEKAKQGETVVPGGTGGHSLEAQEHLAEGRSKGGQTRKEQLGHEGYQEI 60

Query: 59  -------------------MGHRGGQMRREQMGSEGYQ--------------------EM 79
                              MGH+GG+ R+EQ+G EGYQ                    EM
Sbjct: 61  GHKGGEARKEQLGHEGYQEMGHKGGEARKEQLGHEGYQEMGHKGGEARKEQLGHEGYKEM 120

Query: 80  GRKGGLSTIDKSGGERAAEEGIEIDESKY 108
           GRKGGLST++KSGGERA EEGIEIDESK+
Sbjct: 121 GRKGGLSTMEKSGGERAEEEGIEIDESKF 149

It is thought to provide protection for the cytoplasm during the desiccation stage of embryo development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q05191|LE194_HORVU Late embryogenesis abundant protein B19.4 OS=Hordeum vulgare GN=B19.4 PE=2 SV=1

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 103/153 (67%), Gaps = 41/153 (26%)

Query: 1   MAS-QQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
           MAS QQ R ELD  AR+GETVVPGGTGGK+LEAQEHLAEGRSRGGQTR+EQLG EGY+EM
Sbjct: 1   MASGQQERSELDRMAREGETVVPGGTGGKTLEAQEHLAEGRSRGGQTRKEQLGEEGYREM 60

Query: 60  ----------------------------------------GHRGGQMRREQMGSEGYQEM 79
                                                   GH+GG+ R+EQMG EGY+EM
Sbjct: 61  GHKGGETRKEQLGEEGYREMGHKGGETRKEQLGEEGYREMGHKGGETRKEQMGEEGYREM 120

Query: 80  GRKGGLSTIDKSGGERAAEEGIEIDESKYKTSS 112
           GRKGGLST+++SGGERAA EGI+IDESK+KT S
Sbjct: 121 GRKGGLSTMNESGGERAAREGIDIDESKFKTKS 153

Lea proteins are late embryonic proteins abundant in higher plant seed embryos.

Hordeum vulgare (taxid: 4513)

>sp|Q02973|EM6_ARATH Em-like protein GEA6 OS=Arabidopsis thaliana GN=EM6 PE=1 SV=1

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 84/112 (75%), Gaps = 20/112 (17%)

Query: 1   MASQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMG 60
           MASQQ +K+LD RA++GETVVPGGTGGKS EAQ+HLAEGRSRGGQTR+EQLGTEG     
Sbjct: 1   MASQQEKKQLDERAKKGETVVPGGTGGKSFEAQQHLAEGRSRGGQTRKEQLGTEG----- 55

Query: 61  HRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTSS 112
                          YQ+MGRKGGLST DK GGE A EEG+EIDESK++T +
Sbjct: 56  ---------------YQQMGRKGGLSTGDKPGGEHAEEEGVEIDESKFRTKT 92

It is thought to provide protection for the cytoplasm during the desiccation stage of embryo development.

Arabidopsis thaliana (taxid: 3702)

>sp|P17639|EMB1_DAUCA EMB-1 protein OS=Daucus carota GN=EMB-1 PE=2 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 82/110 (74%), Gaps = 20/110 (18%)

Query: 1   MASQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMG 60
           MASQQ +KELD RARQGETVVPGGTGGKSLEAQ+HLAEGRS+GGQTR+EQLG EG     
Sbjct: 1   MASQQEKKELDARARQGETVVPGGTGGKSLEAQQHLAEGRSKGGQTRKEQLGGEG----- 55

Query: 61  HRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKT 110
                          Y EMGRKGGLS  D SGGERA +EGI+IDESK++T
Sbjct: 56  ---------------YHEMGRKGGLSNNDMSGGERAEQEGIDIDESKFRT 90

Daucus carota (taxid: 4039)

>sp|P42755|EM4_WHEAT Em protein H5 OS=Triticum aestivum GN=EMH5 PE=2 SV=1

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 85/113 (75%), Gaps = 21/113 (18%)

Query: 1   MAS-QQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
           MAS QQ R ELD  AR+GETVVPGGTGGKSLEAQEHLA+GRSRGG+TR+EQLG EGY   
Sbjct: 1   MASGQQERSELDRMAREGETVVPGGTGGKSLEAQEHLADGRSRGGETRKEQLGEEGY--- 57

Query: 60  GHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTSS 112
                            +EMGRKGGLST+++SGGERAA EGIEIDESK+KT S
Sbjct: 58  -----------------REMGRKGGLSTMEESGGERAAREGIEIDESKFKTKS 93

It is thought to provide protection for the cytoplasm during the desiccation stage of embryo development.

Triticum aestivum (taxid: 4565)

>sp|P46520|EMP1_ORYSJ Embryonic abundant protein 1 OS=Oryza sativa subsp. japonica GN=EMP1 PE=2 SV=1

 Score =  129 bits (323), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/115 (66%), Positives = 85/115 (73%), Gaps = 23/115 (20%)

Query: 1   MAS---QQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQ 57
           MAS   QQGR ELD  AR+G+TVVPGGTGGKSLEAQE+LAEGRSRGGQTR+EQ+G EG  
Sbjct: 1   MASGQQQQGRSELDRMAREGQTVVPGGTGGKSLEAQENLAEGRSRGGQTRKEQMGEEG-- 58

Query: 58  EMGHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTSS 112
                             Y+EMGRKGGLST D+SGGERAA EGI+IDESKYKT S
Sbjct: 59  ------------------YREMGRKGGLSTGDESGGERAAREGIDIDESKYKTKS 95

Em protein may act as a cytoplasm protectant during desiccation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q08000|EM3_WHEAT Em protein H2 OS=Triticum aestivum GN=EMH2 PE=2 SV=1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/113 (66%), Positives = 83/113 (73%), Gaps = 21/113 (18%)

Query: 1   MAS-QQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
           MAS QQ R +LD +AR+GETVVPGGTGGKSLEA E+LAEGRSRGGQTRREQ+G EG    
Sbjct: 1   MASGQQERSQLDRKAREGETVVPGGTGGKSLEAHENLAEGRSRGGQTRREQMGEEG---- 56

Query: 60  GHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTSS 112
                           Y EMGRKGGLST D+SGGERAA EGI+IDESK+KT S
Sbjct: 57  ----------------YSEMGRKGGLSTNDESGGERAAREGIDIDESKFKTKS 93

It is thought to provide protection for the cytoplasm during the desiccation stage of embryo development.

Triticum aestivum (taxid: 4565)

>sp|P04568|EM1_WHEAT Em protein OS=Triticum aestivum GN=EM PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 84/113 (74%), Gaps = 21/113 (18%)

Query: 1   MAS-QQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
           MAS QQ R +LD +AR+GETVVPGGTGGKSLEAQE+LAEGRSRGGQTRREQ+G E     
Sbjct: 1   MASGQQERSQLDRKAREGETVVPGGTGGKSLEAQENLAEGRSRGGQTRREQMGEE----- 55

Query: 60  GHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTSS 112
                          GY +MGRKGGLST D+SGG+RAA EGI+IDESK+KT S
Sbjct: 56  ---------------GYSQMGRKGGLSTNDESGGDRAAREGIDIDESKFKTKS 93

It is thought to provide protection for the cytoplasm during the desiccation stage of embryo development.

Triticum aestivum (taxid: 4565)

>sp|Q05190|LE19A_HORVU Late embryogenesis abundant protein B19.1A OS=Hordeum vulgare GN=B19.1A PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 84/113 (74%), Gaps = 21/113 (18%)

Query: 1   MAS-QQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
           MAS QQ R +LD +AR+GETVVPGGTGGKSLEAQ++LAEGRSRGGQTRREQ+G EG    
Sbjct: 1   MASGQQERSQLDRKAREGETVVPGGTGGKSLEAQQNLAEGRSRGGQTRREQMGQEG---- 56

Query: 60  GHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTSS 112
                           Y EMGRKGGLS+ D+SGGERAA EGI+IDESK+KT S
Sbjct: 57  ----------------YSEMGRKGGLSSNDESGGERAAREGIDIDESKFKTKS 93

Lea proteins are late embryonic proteins abundant in higher plant seed embryos. It may have a role in desiccation tolerance by acting as an osmoprotective protein or as a desiccation-damage repair protein.

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
255579322	112	Late seed maturation protein P8B6, putat	1.0	1.0	0.857	1e-45
18499	110	late embryogenesis abundant protein [Gos	0.982	1.0	0.845	6e-44
444336	110	water stress-related protein	0.982	1.0	0.836	1e-43
33151040	113	Em protein [Quercus robur]	1.0	0.991	0.812	3e-42
356568122	112	PREDICTED: em-like protein GEA1-like [Gl	0.991	0.991	0.821	9e-42
1754977	112	Em protein [Robinia pseudoacacia]	0.982	0.982	0.810	2e-41
146189786	112	late embryogenesis abundant protein [Vig	0.991	0.991	0.794	3e-41
255637579	112	unknown [Glycine max]	0.991	0.991	0.812	7e-41
3641278	112	late embryogenic abundant protein [Vigna	0.991	0.991	0.785	7e-41
388494570	112	unknown [Lotus japonicus]	0.991	0.991	0.803	7e-41

>gi|255579322|ref|XP_002530506.1| Late seed maturation protein P8B6, putative [Ricinus communis] gi|223529963|gb|EEF31890.1| Late seed maturation protein P8B6, putative [Ricinus communis]

 Score =  186 bits (472), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/112 (85%), Positives = 105/112 (93%)

Query: 1   MASQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMG 60
           M+S Q R ELD RA++GETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGY+E+G
Sbjct: 1   MSSDQERAELDARAKRGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKELG 60

Query: 61  HRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTSS 112
           H+GG+ RREQ+G+EGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYK  S
Sbjct: 61  HKGGETRREQIGTEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKARS 112

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18499|emb|CAA38374.1| late embryogenesis abundant protein [Gossypium hirsutum] gi|167330|gb|AAA33057.1| embryogensis abundant protein [Gossypium hirsutum] gi|167353|gb|AAB00728.1| water-stress protectant protein [Gossypium hirsutum] gi|167355|gb|AAA33064.1| late embryogenesis-abundant protein 2-D [Gossypium hirsutum]

 Score =  181 bits (458), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 93/110 (84%), Positives = 104/110 (94%)

Query: 1   MASQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMG 60
           MASQQ R+ELD RARQGETV+PGGTGGKSLEAQEHLAEGRSRGGQTR+EQLG EGYQE+G
Sbjct: 1   MASQQERQELDARARQGETVIPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGREGYQELG 60

Query: 61  HRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKT 110
            +GGQ R+EQ+G+EGYQEMGRKGGLST+DKSG ERAAEEGI+IDESKY+T
Sbjct: 61  SKGGQTRKEQIGTEGYQEMGRKGGLSTMDKSGVERAAEEGIDIDESKYRT 110

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444336|prf||1906384B water stress-related protein

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 104/110 (94%)

Query: 1   MASQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMG 60
           MASQQ R++LD RARQGETV+PGGTGGKSLEAQEHLAEGRSRGGQTR+EQLG EGYQE+G
Sbjct: 1   MASQQERQQLDARARQGETVIPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGREGYQELG 60

Query: 61  HRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKT 110
            +GGQ R+EQ+G+EGYQEMGRKGGLST+DKSG ERAAEEGI+IDESKY+T
Sbjct: 61  SKGGQTRKEQIGTEGYQEMGRKGGLSTMDKSGVERAAEEGIDIDESKYRT 110

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33151040|gb|AAP97398.1| Em protein [Quercus robur]

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/112 (81%), Positives = 101/112 (90%)

Query: 1   MASQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMG 60
           MAS Q R ELD RARQGETV+PGGTGGKSLEAQEHLA+GRSRGGQTR+EQLG EGYQE+G
Sbjct: 1   MASGQERSELDPRARQGETVIPGGTGGKSLEAQEHLAQGRSRGGQTRKEQLGHEGYQEIG 60

Query: 61  HRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTSS 112
            +GGQ R+EQ+G EGYQEMGRKGGL  +DKSGGERAAEEGIEIDESK+KT +
Sbjct: 61  SKGGQTRKEQIGHEGYQEMGRKGGLGAMDKSGGERAAEEGIEIDESKFKTKN 112

Source: Quercus robur

Species: Quercus robur

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568122|ref|XP_003552262.1| PREDICTED: em-like protein GEA1-like [Glycine max]

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 92/112 (82%), Positives = 102/112 (91%), Gaps = 1/112 (0%)

Query: 1   MASQQG-RKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
           M SQQ  R+ELD +ARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTR++QLG+EGY EM
Sbjct: 1   MESQQANREELDEKARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKQQLGSEGYHEM 60

Query: 60  GHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTS 111
           G +GGQ R+EQMG EGYQEMGRKGGLST+DKSGGERA EEGIEIDESK+K +
Sbjct: 61  GTKGGQTRKEQMGREGYQEMGRKGGLSTMDKSGGERAEEEGIEIDESKFKIT 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1754977|gb|AAB39473.1| Em protein [Robinia pseudoacacia]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/111 (81%), Positives = 100/111 (90%), Gaps = 1/111 (0%)

Query: 1   MASQQ-GRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
           MASQQ  R+ELD RAR GETVVPGGTGGKSLEAQEHLAEGRSRGG TR++QLG+EGY EM
Sbjct: 1   MASQQQNREELDERARHGETVVPGGTGGKSLEAQEHLAEGRSRGGHTRKQQLGSEGYHEM 60

Query: 60  GHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKT 110
           G +GGQ R+EQMG EGYQEMGRKGGLST+DKSGGE AAEEGI+IDESK++ 
Sbjct: 61  GTKGGQTRKEQMGKEGYQEMGRKGGLSTMDKSGGEHAAEEGIDIDESKFRN 111

Source: Robinia pseudoacacia

Species: Robinia pseudoacacia

Genus: Robinia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146189786|emb|CAM92311.1| late embryogenesis abundant protein [Vigna radiata] gi|148291150|emb|CAN84534.1| late embryogenesis abundant protein [Vigna radiata] gi|148291152|emb|CAN84535.1| late embryogenesis abundant protein [Vigna radiata]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 103/112 (91%), Gaps = 1/112 (0%)

Query: 1   MASQQG-RKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
           MAS+Q  R+ELD RA+QGETVVPGGTGGKSLEAQEHLAEGRSRGGQTR++QLG+EGY EM
Sbjct: 1   MASKQANREELDERAKQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKQQLGSEGYHEM 60

Query: 60  GHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTS 111
           G +GGQ R+EQMG+EGY+EMGRKGGLST+DKSG ERA E+GIEIDESK+K +
Sbjct: 61  GTKGGQTRKEQMGTEGYKEMGRKGGLSTMDKSGAERAEEKGIEIDESKFKKN 112

Source: Vigna radiata

Species: Vigna radiata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637579|gb|ACU19115.1| unknown [Glycine max]

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 91/112 (81%), Positives = 101/112 (90%), Gaps = 1/112 (0%)

Query: 1   MASQQG-RKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
           M SQQ  R+ELD +ARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTR++QLG+EGY EM
Sbjct: 1   MESQQANREELDEKARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKQQLGSEGYHEM 60

Query: 60  GHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTS 111
           G +GGQ R+EQMG EGYQEMGRKGGLST+DKSG ERA EEGIEIDESK+K +
Sbjct: 61  GTKGGQTRKEQMGREGYQEMGRKGGLSTMDKSGRERAEEEGIEIDESKFKIT 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3641278|gb|AAC36329.1| late embryogenic abundant protein [Vigna radiata]

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 102/112 (91%), Gaps = 1/112 (0%)

Query: 1   MASQQG-RKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
           MAS+Q  R+ELD RA+QGETVVPGGTGGKSLEAQEHLAEGRSRGGQTR++QLG+EGY EM
Sbjct: 1   MASKQANREELDQRAKQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKQQLGSEGYHEM 60

Query: 60  GHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTS 111
           G +GGQ R+EQMG+EGY+EMGRKGGLST+DKSG ERA E+GIE DESK+K +
Sbjct: 61  GTKGGQTRKEQMGTEGYKEMGRKGGLSTMDKSGAERAEEKGIEFDESKFKKN 112

Source: Vigna radiata

Species: Vigna radiata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494570|gb|AFK35351.1| unknown [Lotus japonicus]

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 101/112 (90%), Gaps = 1/112 (0%)

Query: 1   MASQQ-GRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
           MA+QQ  R+ELD RAR GETVVPGGTGGKSLEA EHLA+GRSRGGQTR++QLG+EGY EM
Sbjct: 1   MATQQENREELDERARLGETVVPGGTGGKSLEAPEHLAQGRSRGGQTRKQQLGSEGYHEM 60

Query: 60  GHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKYKTS 111
           G +GGQ R+EQMG EGYQEMGRKGGLST+DKSGGERAAEEGIEIDESK++  
Sbjct: 61  GTKGGQTRKEQMGREGYQEMGRKGGLSTMDKSGGERAAEEGIEIDESKFRND 112

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2074383	152	EM1 "AT3G51810" [Arabidopsis t	0.75	0.552	0.776	3.7e-32
TAIR|locus:2065041	92	GEA6 "AT2G40170" [Arabidopsis	0.714	0.869	0.7	5.2e-26
UNIPROTKB|P46520	95	EMP1 "Embryonic abundant prote	0.633	0.747	0.718	1.4e-23

TAIR|locus:2074383 EM1 "AT3G51810" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 66/85 (77%), Positives = 77/85 (90%)

Query:     1 MASQQ-GRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEM 59
             MAS+Q  R+ELD +A+QGETVVPGGTGG SLEAQEHLAEGRS+GGQTR+EQLG EGYQE+
Sbjct:     1 MASKQLSREELDEKAKQGETVVPGGTGGHSLEAQEHLAEGRSKGGQTRKEQLGHEGYQEI 60

Query:    60 GHRGGQMRREQMGSEGYQEMGRKGG 84
             GH+GG+ R+EQ+G EGYQEMG KGG
Sbjct:    61 GHKGGEARKEQLGHEGYQEMGHKGG 85

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;TAS

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA;TAS

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2065041 GEA6 "AT2G40170" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 56/80 (70%), Positives = 67/80 (83%)

Query:     1 MASQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMG 60
             MASQQ +K+LD RA++GETVVPGGTGGKS EAQ+HLAEGRSRGGQTR+EQLGTEGYQ+MG
Sbjct:     1 MASQQEKKQLDERAKKGETVVPGGTGGKSFEAQQHLAEGRSRGGQTRKEQLGTEGYQQMG 60

Query:    61 HRGGQMRREQMGSEGYQEMG 80
              +GG    ++ G E  +E G
Sbjct:    61 RKGGLSTGDKPGGEHAEEEG 80

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0048316 "seed development" evidence=IMP

GO:0048700 "acquisition of desiccation tolerance in seed" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA;TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

UNIPROTKB|P46520 EMP1 "Embryonic abundant protein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 51/71 (71%), Positives = 60/71 (84%)

Query:     4 QQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMGHRG 63
             QQGR ELD  AR+G+TVVPGGTGGKSLEAQE+LAEGRSRGGQTR+EQ+G EGY+EMG +G
Sbjct:     7 QQGRSELDRMAREGQTVVPGGTGGKSLEAQENLAEGRSRGGQTRKEQMGEEGYREMGRKG 66

Query:    64 GQMRREQMGSE 74
             G    ++ G E
Sbjct:    67 GLSTGDESGGE 77

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P22701	EM2_WHEAT	No assigned EC number	0.6403	0.8214	0.9787	N/A	no
P42755	EM4_WHEAT	No assigned EC number	0.6725	0.8214	0.9892	N/A	no
Q02400	LE193_HORVU	No assigned EC number	0.6766	1.0	0.8421	N/A	no
P09443	LE19_GOSHI	No assigned EC number	0.5855	0.8125	0.8921	N/A	no
P17639	EMB1_DAUCA	No assigned EC number	0.6727	0.8035	0.9782	N/A	no
P46532	LE19B_HORVU	No assigned EC number	0.6548	0.8214	0.9892	N/A	no
Q05190	LE19A_HORVU	No assigned EC number	0.6548	0.8214	0.9892	N/A	no
P04568	EM1_WHEAT	No assigned EC number	0.6548	0.8214	0.9892	N/A	no
Q07187	EM1_ARATH	No assigned EC number	0.5906	0.9642	0.7105	yes	no
Q08000	EM3_WHEAT	No assigned EC number	0.6637	0.8214	0.9892	N/A	no
P46520	EMP1_ORYSJ	No assigned EC number	0.6695	0.8214	0.9684	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
pfam00477	109	pfam00477, LEA_5, Small hydrophilic plant seed pro	6e-28

>gnl|CDD|109530 pfam00477, LEA_5, Small hydrophilic plant seed protein

 Score = 97.8 bits (243), Expect = 6e-28
 Identities = 88/107 (82%), Positives = 99/107 (92%)

Query: 2   ASQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMGH 61
           + Q+ R+ELD RA+QGETVVPGGTGGKSLEAQEHLAEGRS+GGQTR+EQLGTEGYQEMG 
Sbjct: 3   SGQEEREELDRRAKQGETVVPGGTGGKSLEAQEHLAEGRSKGGQTRKEQLGTEGYQEMGT 62

Query: 62  RGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEIDESKY 108
           +GGQ R+EQMG EGY EMGRKGGLST+D+SGGERAA EGIEIDESK+
Sbjct: 63  KGGQTRKEQMGHEGYSEMGRKGGLSTMDESGGERAAREGIEIDESKF 109

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PF00477	109	LEA_5: Small hydrophilic plant seed protein; Inter	100.0
PF00477	109	LEA_5: Small hydrophilic plant seed protein; Inter	99.58
COG3729	73	GsiB General stress protein [General function pred	99.3
COG3729	73	GsiB General stress protein [General function pred	99.25
PF10685	23	KGG: Stress-induced bacterial acidophilic repeat m	96.69
PF10685	23	KGG: Stress-induced bacterial acidophilic repeat m	96.34

>PF00477 LEA_5: Small hydrophilic plant seed protein; InterPro: IPR000389 This entry contains a number of bacterial proteins annotated as stress-induced and members of the plant LEA (late embryogenesis abundant) proteins, which are small hydrophilic plant seed proteins that are structurally related

Probab=100.00  E-value=2e-50  Score=292.98  Aligned_cols=108  Identities=71%  Similarity=1.085  Sum_probs=106.8

Q ss_pred             Ccc-hhhhHHHHHHHhcCCccccCCCCCcchhHHHHHHHhhhccchhhhhhhchhhHHhhhccccchhhhhcCchhHHHh
Q 040090            1 MAS-QQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMGHRGGQMRREQMGSEGYQEM   79 (112)
Q Consensus         1 m~~-~~~~~eld~~a~~getvv~ggtgg~s~~aqEfy~E~G~KGGeats~~~G~efY~EiG~KGGeat~e~~g~efYeEi   79 (112)
                      ||| |++|++||++||+|+|||||||||+||+||++++|+|+|||++|+++||+|||++||+|||++|+++|+++||++|
T Consensus         1 ma~~q~~r~eld~~aregetvv~gGtggksl~aqe~laEggkKGGetr~e~~G~E~YqEiG~KGGe~t~e~~g~EfY~ei   80 (109)
T PF00477_consen    1 MASGQESREELDARAREGETVVPGGTGGKSLEAQERLAEGGKKGGETRKEQHGKEFYQEIGKKGGEATKEKHGKEFYEEI   80 (109)
T ss_pred             CcchhHHHHHHHHHHhcCCccccCCCCCCcchHHHHHHHHHhhcccchhhhcchhHHHHHhhccCccchhhhchHHHHHH
Confidence            899 6699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCccccccCCchhHHhhCCccCcccc
Q 040090           80 GRKGGLSTIDKSGGERAAEEGIEIDESKY  108 (112)
Q Consensus        80 G~KGG~a~~~~~g~efyeE~G~~~de~~~  108 (112)
                      |||||+++++++|.|+++++||+||||||
T Consensus        81 GrKGG~~~~~~~g~era~~eg~~~de~~~  109 (109)
T PF00477_consen   81 GRKGGEATSDKSGGERAAEEGIEIDESKF  109 (109)
T ss_pred             HHhhCcccccccchHHHHHcCCCcccccC
Confidence            99999999999999999999999999998

These proteins contains from 83 to 153 amino acid residues and may play a role [, ] in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components. They may also play a role during imbibition by controlling water uptake.

>PF00477 LEA_5: Small hydrophilic plant seed protein; InterPro: IPR000389 This entry contains a number of bacterial proteins annotated as stress-induced and members of the plant LEA (late embryogenesis abundant) proteins, which are small hydrophilic plant seed proteins that are structurally related

Probab=99.58  E-value=3.5e-16  Score=114.15  Aligned_cols=63  Identities=40%  Similarity=0.560  Sum_probs=54.8

Q ss_pred             ccchhhhhhhchhhHHhhhccccchhhhhcCchhHHHhhhcCCccccccCCchhHHhhCCccC
Q 040090           42 RGGQTRREQLGTEGYQEMGHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEID  104 (112)
Q Consensus        42 KGGeats~~~G~efY~EiG~KGGeat~e~~g~efYeEiG~KGG~a~~~~~g~efyeE~G~~~d  104 (112)
                      +||...+..+..+++.|.|+|||++++++||++||++||+|||++++++|+++||++||+.=-
T Consensus        23 ~gGtggksl~aqe~laEggkKGGetr~e~~G~E~YqEiG~KGGe~t~e~~g~EfY~eiGrKGG   85 (109)
T PF00477_consen   23 PGGTGGKSLEAQERLAEGGKKGGETRKEQHGKEFYQEIGKKGGEATKEKHGKEFYEEIGRKGG   85 (109)
T ss_pred             cCCCCCCcchHHHHHHHHHhhcccchhhhcchhHHHHHhhccCccchhhhchHHHHHHHHhhC
Confidence            356666777888999999999999999999999999999999999999999999999987533

These proteins contains from 83 to 153 amino acid residues and may play a role [, ] in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components. They may also play a role during imbibition by controlling water uptake.

>COG3729 GsiB General stress protein [General function prediction only]

Probab=99.30  E-value=6.3e-13  Score=91.61  Aligned_cols=58  Identities=28%  Similarity=0.408  Sum_probs=50.2

Q ss_pred             hHHHHHHHhhhccchhhhhhhchhhHHhhhccccchhh--hhcCchhHHHhhhcCCcccc
Q 040090           31 EAQEHLAEGRSRGGQTRREQLGTEGYQEMGHRGGQMRR--EQMGSEGYQEMGRKGGLSTI   88 (112)
Q Consensus        31 ~aqEfy~E~G~KGGeats~~~G~efY~EiG~KGGeat~--e~~g~efYeEiG~KGG~a~~   88 (112)
                      .+.+||+++.++||+.....+++++|+|||+|||+.+-  ..+++++|+++|+|||+.+.
T Consensus         6 ~~~ef~~~~~~~gGr~g~~a~D~e~~~EigrkGGq~sgg~f~~D~e~a~eaG~KGG~~s~   65 (73)
T COG3729           6 HAKEFYQMAEHRGGRSGNFAEDRERASEIGRKGGQHSGGNFKNDPQRASEAGKKGGQPSH   65 (73)
T ss_pred             cccccchhhhcccccccccccCHHHHHHHHHhccccCCCccccCHHHHHHhccccCCccc
Confidence            45689999999999999999999999999999999874  45689999999999998774

>COG3729 GsiB General stress protein [General function prediction only]

Probab=99.25  E-value=2.3e-12  Score=88.81  Aligned_cols=57  Identities=33%  Similarity=0.429  Sum_probs=52.9

Q ss_pred             hhhhhhchhhHHhhhccccchhhhhcCchhHHHhhhcCCccccc--cCCchhHHhhCCc
Q 040090           46 TRREQLGTEGYQEMGHRGGQMRREQMGSEGYQEMGRKGGLSTID--KSGGERAAEEGIE  102 (112)
Q Consensus        46 ats~~~G~efY~EiG~KGGeat~e~~g~efYeEiG~KGG~a~~~--~~g~efyeE~G~~  102 (112)
                      +|+..|.++||++++++||+...-.+++++|+|||+|||+.+..  ++|+++|+|+|..
T Consensus         1 ~tsk~~~~ef~~~~~~~gGr~g~~a~D~e~~~EigrkGGq~sgg~f~~D~e~a~eaG~K   59 (73)
T COG3729           1 ATSKGHAKEFYQMAEHRGGRSGNFAEDRERASEIGRKGGQHSGGNFKNDPQRASEAGKK   59 (73)
T ss_pred             CCCcccccccchhhhcccccccccccCHHHHHHHHHhccccCCCccccCHHHHHHhccc
Confidence            57889999999999999999999999999999999999999865  7899999999953

>PF10685 KGG: Stress-induced bacterial acidophilic repeat motif; InterPro: IPR019626 This repeat contains a highly conserved, characteristic sequence motif, KGG, that is recognised by plants and lower eukaryotes

Probab=96.69  E-value=0.00076  Score=37.64  Aligned_cols=18  Identities=44%  Similarity=0.770  Sum_probs=11.8

Q ss_pred             hcCchhHHHhhhcCCccc
Q 040090           70 QMGSEGYQEMGRKGGLST   87 (112)
Q Consensus        70 ~~g~efYeEiG~KGG~a~   87 (112)
                      +++++++.|||+|||+++
T Consensus         4 ~~d~e~~~eig~kGG~as   21 (23)
T PF10685_consen    4 SMDPEKAREIGRKGGQAS   21 (23)
T ss_pred             ccCHHHHHHHHHhcCccc
Confidence            456667777777777654

Further downstream from this motif is a Walker A, nucleotide binding motif. YciG is expressed as part of a three-gene operon, yciGFE and this operon is induced by stress and is regulated by RpoS, which controls the general stress-response in E coli. YciG was shown to be important for stationary-phase resistance to thermal stress and in particular to acid stress [].

>PF10685 KGG: Stress-induced bacterial acidophilic repeat motif; InterPro: IPR019626 This repeat contains a highly conserved, characteristic sequence motif, KGG, that is recognised by plants and lower eukaryotes

Probab=96.34  E-value=0.0014  Score=36.52  Aligned_cols=19  Identities=32%  Similarity=0.632  Sum_probs=15.6

Q ss_pred             hhhchhhHHhhhccccchh
Q 040090           49 EQLGTEGYQEMGHRGGQMR   67 (112)
Q Consensus        49 ~~~G~efY~EiG~KGGeat   67 (112)
                      .++++|+++|||+|||+++
T Consensus         3 a~~d~e~~~eig~kGG~as   21 (23)
T PF10685_consen    3 ASMDPEKAREIGRKGGQAS   21 (23)
T ss_pred             cccCHHHHHHHHHhcCccc
Confidence            3578899999999999875

Further downstream from this motif is a Walker A, nucleotide binding motif. YciG is expressed as part of a three-gene operon, yciGFE and this operon is induced by stress and is regulated by RpoS, which controls the general stress-response in E coli. YciG was shown to be important for stationary-phase resistance to thermal stress and in particular to acid stress [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00