Citrus Sinensis ID: 040116

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MAMAALRREGRRFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEccccEEccccccEEEEEccccccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccccccccccHHHHccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHcccccEEEEEEcccEccccccccHHHccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAMAALRREgrrfatplisprpiaairspflseedaplgvrsiSTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAensrglwqpftallgdtptvdakKNVIVTISsdkglcggiNSTAVKISKSLHKLNSDIELIITELqknplnytqVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEReaesggklgeldsyeieggetKGEILQNLAEFQFSCVMFNAVLENACSEQgarmsamdsssrnAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG
Flexible Loop (DISEMBL)
mamaalrregrrfatplisprpiaairspflseedaplgvrsistqivrnrmksvKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQpftallgdtptvdAKKNVIVTissdkglcggINSTAVKISKSLHKLNSDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREaesggklgeldsYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTynrtrqasitteLIEIISGASALEG
Low Complexity Region (SEG)
MAMAALRREGRRFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG
Disordered region (IsUnstruct)
**************************************GVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPEL****************YEIEGGETKGEILQNLAEFQFSCVMFNAVLENAC**********************RLTLTYNRTRQASITTELIEII********
Disordered Region (DISOPRED)
*****************************************SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSP***************LDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE*
Disordered Region (DISEMBL)
********EGRRFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACS**************NAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG
Disordered Region (DISPRO)
************FATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMAALRREGRRFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
P26360	326	ATP synthase subunit gamm	N/A	no	1.0	0.914	0.782	1e-143
Q96250	325	ATP synthase subunit gamm	yes	no	0.996	0.913	0.771	1e-142
B7KUA3	296	ATP synthase gamma chain	yes	no	0.842	0.847	0.395	4e-42
B1ZEE8	295	ATP synthase gamma chain	yes	no	0.838	0.847	0.378	6e-41
P05631	298	ATP synthase subunit gamm	yes	no	0.815	0.815	0.376	1e-40
A9W2R2	296	ATP synthase gamma chain	yes	no	0.842	0.847	0.395	2e-40
Q4FP37	291	ATP synthase gamma chain	yes	no	0.812	0.831	0.369	5e-40
B0UE40	292	ATP synthase gamma chain	yes	no	0.818	0.835	0.381	7e-40
A8LJR5	290	ATP synthase gamma chain	yes	no	0.802	0.824	0.370	8e-40
Q162S8	291	ATP synthase gamma chain	yes	no	0.818	0.838	0.355	1e-39

>sp|P26360|ATPG3_IPOBA ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2

 Score =  509 bits (1310), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/326 (78%), Positives = 278/326 (85%), Gaps = 28/326 (8%)

Query: 1   MAMAALRREGRRFAT-PLISPRPIAAIRSPFLS--EEDAPLGVRSISTQIVRNRMKSVKN 57
           MAMAALRREGRR A  P  SP P+ A+RS  +S  EE    GVRSISTQ+VRNRMKSVKN
Sbjct: 1   MAMAALRREGRRLAAAPFTSPTPLNALRSSLVSPSEEIGLSGVRSISTQVVRNRMKSVKN 60

Query: 58  IQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLC 117
           IQKITKAMKMVAASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLC
Sbjct: 61  IQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLC 120

Query: 118 GGINSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNY 152
           GGINST+VK S+++HKLNS                         DIELIITELQKNPLNY
Sbjct: 121 GGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNY 180

Query: 153 TQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS 212
           TQVSV+ADDILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE+VERE+ESGGKLG+LDS
Sbjct: 181 TQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDS 240

Query: 213 YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTL 272
           YEIEG E+K E+LQNL EFQFS V+FNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTL
Sbjct: 241 YEIEGAESKSEVLQNLTEFQFSSVLFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTL 300

Query: 273 TYNRTRQASITTELIEIISGASALEG 298
           TYNRTRQASITTELIEIISGASALEG
Sbjct: 301 TYNRTRQASITTELIEIISGASALEG 326

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Ipomoea batatas (taxid: 4120)

>sp|Q96250|ATPG3_ARATH ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1

 Score =  503 bits (1294), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/324 (77%), Positives = 276/324 (85%), Gaps = 27/324 (8%)

Query: 1   MAMAALRREGRRFATPLISPRPIAAIRSPFLS-EEDAPLGVRSISTQIVRNRMKSVKNIQ 59
           MAMA  RREGRR   P I+ RPIAAIRSP  S +E+  LGVRSISTQ+VRNRMKSVKNIQ
Sbjct: 1   MAMAVFRREGRRL-LPSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQ 59

Query: 60  KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGG 119
           KITKAMKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGG
Sbjct: 60  KITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGG 119

Query: 120 INSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNYTQ 154
           INST VK+S++L+KLN+                         DI L +TEL KNPLNY Q
Sbjct: 120 INSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQ 179

Query: 155 VSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 214
           VSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKLGELDSYE
Sbjct: 180 VSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYE 239

Query: 215 IEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTY 274
           IEGGETKGEILQNLAEFQFSCVMFNAVLENACSE GARMSAMDSSSRNAGEMLDRLTLTY
Sbjct: 240 IEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLTY 299

Query: 275 NRTRQASITTELIEIISGASALEG 298
           NRTRQASITTELIEIISGASALE 
Sbjct: 300 NRTRQASITTELIEIISGASALEA 323

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Arabidopsis thaliana (taxid: 3702)

>sp|B7KUA3|ATPG_METC4 ATP synthase gamma chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpG PE=3 SV=1

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/296 (39%), Positives = 161/296 (54%), Gaps = 45/296 (15%)

Query: 44  STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD------- 96
           S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN R   +    +LG+       
Sbjct: 3   SLKDLRNRITSVKATQKITKAMQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIG 62

Query: 97  --------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKS-LHKLNSDIEL--IITEL 145
                   + T   + +++V  + D+GL G  NS+  ++++   ++L +D +   IIT  
Sbjct: 63  GVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIG 122

Query: 146 QKN----------------------PLNYTQVSVLADDILKNV---EFDALRIIYSKFHS 180
           +K                       P++Y   + +ADDIL      EFD   + YS+F S
Sbjct: 123 KKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRS 182

Query: 181 VVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNA 240
           V+S +PT   ++  EL   E  S    G   + E E  E    IL+ L     +  +F A
Sbjct: 183 VISQIPTAQKLIPAELPTAEGASATGAGSDAAMEFEPNEET--ILETLLPKNLTVQIFRA 240

Query: 241 VLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           +LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct: 241 LLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296

Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.

Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) (taxid: 440085)

>sp|B1ZEE8|ATPG_METPB ATP synthase gamma chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpG PE=3 SV=1

 Score =  167 bits (424), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/296 (37%), Positives = 160/296 (54%), Gaps = 46/296 (15%)

Query: 44  STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD------- 96
           S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN R   +   ++L +       
Sbjct: 3   SLKDLRNRITSVKATQKITKAMQMVAAAKLRRAQNAAENGRPYAEKMASVLANLAGNLIG 62

Query: 97  --------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKS------------------ 130
                   + T   + +++V  + D+GL G  NS+  ++++                   
Sbjct: 63  GVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMAEGKTVKIMTVG 122

Query: 131 ------LHKLNSDIELIITELQKN-PLNYTQVSVLADDILKNVE---FDALRIIYSKFHS 180
                 L +   D  +   +++ N P++Y   + +ADDIL   E   FD   + YS+F S
Sbjct: 123 KKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRS 182

Query: 181 VVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNA 240
           V+S +PT   ++  EL + +  + G  G   + E E  E    IL+ L     +  +F A
Sbjct: 183 VISQIPTAQKIIPAELPQTDGAAKGA-GSDAAMEFEPSEET--ILETLLPKNLTVQVFRA 239

Query: 241 VLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           +LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct: 240 LLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 295

Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.

Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) (taxid: 441620)

>sp|P05631|ATPG_BOVIN ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/292 (37%), Positives = 171/292 (58%), Gaps = 49/292 (16%)

Query: 40  VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFT 91
           VR+++T + +  R+KS+KNIQKITK+MKMVAA+K       L+  +V    S  L++   
Sbjct: 22  VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKAD 81

Query: 92  ALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKS--------------------- 130
                TP  D KK++I+ +SSD+GLCG I+S+  K  KS                     
Sbjct: 82  I---KTPE-DKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKI 137

Query: 131 ---LHKLNSDIELI-ITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFL 185
              LH+ +SD  L+   E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+ 
Sbjct: 138 RSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYK 197

Query: 186 PTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENA 245
                + S + +   AES     ++D+          ++L+N  E+  + +++ ++ E+ 
Sbjct: 198 TEEKPIFSLDTIS-SAESMSIYDDIDA----------DVLRNYQEYSLANIIYYSLKEST 246

Query: 246 CSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
            SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 247 TSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Bos taurus (taxid: 9913)

>sp|A9W2R2|ATPG_METEP ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/296 (39%), Positives = 161/296 (54%), Gaps = 45/296 (15%)

Query: 44  STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD------- 96
           S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN R   +    +LG+       
Sbjct: 3   SLKDLRNRITSVKATQKITKAMQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIG 62

Query: 97  --------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKS-LHKLNSDIEL--IITEL 145
                   T T   + +++V  + D+GL G  NS+  ++++   ++L +D +   IIT  
Sbjct: 63  GVGAPRLLTGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIG 122

Query: 146 QKN----------------------PLNYTQVSVLADDILKNV---EFDALRIIYSKFHS 180
           +K                       P++Y   + +ADDIL      EFD   + YS+F S
Sbjct: 123 KKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRS 182

Query: 181 VVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNA 240
           V+S +PT   ++  EL   E  +    G   + E E  E    IL+ L     +  +F A
Sbjct: 183 VISQIPTAQKLIPAELPTAEGAAATGAGSDAAMEFEPNEET--ILETLLPKNLTVQIFRA 240

Query: 241 VLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           +LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct: 241 LLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296

Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.

Methylobacterium extorquens (strain PA1) (taxid: 419610)

>sp|Q4FP37|ATPG_PELUB ATP synthase gamma chain OS=Pelagibacter ubique (strain HTCC1062) GN=atpG PE=3 SV=1

 Score =  164 bits (416), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/292 (36%), Positives = 160/292 (54%), Gaps = 50/292 (17%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD----------- 96
           ++ R+ SVK+ QKITKAMKMVAA+KLR  Q  AE  R   +    ++ +           
Sbjct: 7   LKKRIASVKSTQKITKAMKMVAAAKLRRAQENAEKGRPYSEKMNNIILNLSSGISDKENA 66

Query: 97  ----TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSD----IELI------- 141
               + T + K ++ + ++SD+GLCGG N+  +K +K+  +  SD    +++I       
Sbjct: 67  PKLLSGTGEDKVHLCIVLTSDRGLCGGFNTNIIKKAKTYFQKISDEGKTLKIITVGSKGY 126

Query: 142 --------------ITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSF 184
                         I+      +NY     +   I++N    EFD   I Y+KF +V++ 
Sbjct: 127 DQLKRVYKDAIVERISFKDSKTINYLDAEKVGKMIIENFEKEEFDVCTIFYNKFKNVITQ 186

Query: 185 LPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLEN 244
           +P    ++  +  E E  S       D+YE E  E   EIL NL     S  +F A+LEN
Sbjct: 187 IPQEQQIIPLKTSEAEENSSE-----DNYEFEPDE--DEILSNLLPKNISTQIFKAMLEN 239

Query: 245 ACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           + SEQG+RMSAMD+++RNAGEM+D+LT+ YNR+RQA+IT ELIEIISGA +L
Sbjct: 240 SASEQGSRMSAMDNATRNAGEMVDKLTIEYNRSRQAAITKELIEIISGAESL 291

Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.

Pelagibacter ubique (strain HTCC1062) (taxid: 335992)

>sp|B0UE40|ATPG_METS4 ATP synthase gamma chain OS=Methylobacterium sp. (strain 4-46) GN=atpG PE=3 SV=1

 Score =  164 bits (415), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 114/299 (38%), Positives = 162/299 (54%), Gaps = 55/299 (18%)

Query: 44  STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD-----TP 98
           S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN+R   +   A+LG+     TP
Sbjct: 3   SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQNAAENARPYAERMAAVLGNLATNLTP 62

Query: 99  TVDAKK----------NVIVTISSDKGLCGGINSTAVKISKS----------------LH 132
             +  +          ++++  ++++GLCG  NS+  ++++                 + 
Sbjct: 63  GAETPRLLSGTGADRVHLLLVCTAERGLCGAFNSSIARLARDHARRLTAEGRTVKIICVG 122

Query: 133 KLNSDI----------ELIITELQK-NPLNYTQVSVLADDILKNVE---FDALRIIYSKF 178
           K   DI          ELI  EL+    L +     +A ++L   E   FD   + YS+F
Sbjct: 123 KKGYDILRREFRDQIVELI--ELRGVRQLGFDNAETIAQNLLGRFEAGEFDIATLFYSRF 180

Query: 179 HSVVSFLPTMATVLSPELVEREAESGGKLGELDS-YEIEGGETKGEILQNLAEFQFSCVM 237
            SV+  +PT   ++  E+        G+  + D+ YE E  E  GEIL  L     +  +
Sbjct: 181 RSVIVQIPTAQQIIPAEI-----PPAGEAAQTDAAYEYEPDE--GEILAALLPKNLTVQI 233

Query: 238 FNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
             A+LENA SEQGARMSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct: 234 LRALLENAASEQGARMSAMDNATRNAGEMIKKQTLVYNRTRQAQITKELIEIISGAEAL 292

Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.

Methylobacterium sp. (strain 4-46) (taxid: 426117)

>sp|A8LJR5|ATPG_DINSH ATP synthase gamma chain OS=Dinoroseobacter shibae (strain DFL 12) GN=atpG PE=3 SV=1

 Score =  164 bits (415), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 109/294 (37%), Positives = 168/294 (57%), Gaps = 55/294 (18%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-------GDTP-- 98
           ++NR++SVK+ +KITKAM+MVAA+KLR  Q  AE SR   + F A+L       GD+   
Sbjct: 7   LKNRIESVKSTRKITKAMQMVAAAKLRRAQDAAEASRPYTERFNAVLAGLAASVGDSDSG 66

Query: 99  ------TVDAKKNVIVTISSDKGLCGGINSTAVKIS---------------------KSL 131
                 T   + +++V +++++GLCGG NS+  K++                     K  
Sbjct: 67  PRLLVGTGSDQTHLLVVMTAERGLCGGFNSSIAKLARAHAEKLVAQGKTVKILTVGKKGR 126

Query: 132 HKLNSDI------ELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVV 182
            +L  D+       + ++E+++  ++Y   + +A D+L      EFD   I +++F SV+
Sbjct: 127 EQLKRDLSKHFIGHVDLSEVKR--VSYDNAADIAADVLGRFDAGEFDVATIFFNRFQSVI 184

Query: 183 SFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVL 242
           S +PT   ++ P   E +A++   L     Y+ E  E    IL +L     +  +F A+L
Sbjct: 185 SQIPTAQQII-PASFEGDADADATL-----YDYEPSEEA--ILADLLPRGVATQIFAALL 236

Query: 243 ENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           EN  SEQGARMSAMD+++RNAG+M++RLT+ YNR+RQA IT ELIEIISGA AL
Sbjct: 237 ENGASEQGARMSAMDNATRNAGDMIERLTIEYNRSRQAVITNELIEIISGAEAL 290

Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.

Dinoroseobacter shibae (strain DFL 12) (taxid: 398580)

>sp|Q162S8|ATPG_ROSDO ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 166/298 (55%), Gaps = 54/298 (18%)

Query: 44  STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD------- 96
           S + ++NR++SVK+ +KITKAM+MVAA+KLR  Q  AE SR   + F A++         
Sbjct: 3   SLKDLKNRIESVKSTRKITKAMQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASVGG 62

Query: 97  --------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKS----LHKLNSDIELI--- 141
                   + T   K  +++ ++S++GLCGG N+   K++++    L     D++++   
Sbjct: 63  SDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVG 122

Query: 142 --------------------ITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKF 178
                               +TE+++  ++Y     +A D+L      EFD   I Y+KF
Sbjct: 123 KKGRDQLKRDLGSLFIGHVDLTEIKR--VSYVDAQGIAKDVLNRFDVGEFDVATIFYAKF 180

Query: 179 HSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMF 238
            +VVS +PT   ++  +  ++E E    L     ++ E  E    IL +L     +  +F
Sbjct: 181 VNVVSQIPTAQQIIPAKFEQQEGEEASTL-----FDYEPDEEA--ILADLLPRGVATQIF 233

Query: 239 NAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           +A+LEN  SEQGARMSAMD+++RNAGEM++ LT+ +NR+RQA IT ELIEIISGA AL
Sbjct: 234 SALLENGASEQGARMSAMDNATRNAGEMIENLTIEFNRSRQAVITNELIEIISGAEAL 291

Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (taxid: 375451)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
255581367	326	ATP synthase f1, gamma subunit, putative	1.0	0.914	0.812	1e-149
225457219	322	PREDICTED: ATP synthase subunit gamma, m	0.996	0.922	0.804	1e-147
449439313	322	PREDICTED: ATP synthase subunit gamma, m	0.996	0.922	0.798	1e-146
224130048	324	predicted protein [Populus trichocarpa]	1.0	0.919	0.780	1e-143
543867	326	RecName: Full=ATP synthase subunit gamma	1.0	0.914	0.782	1e-142
192910896	323	mitochondrial ATP synthase gamma chain [	1.0	0.922	0.773	1e-141
297826751	325	gamma subunit of mitochondrial F1-ATPase	0.993	0.910	0.777	1e-140
110740981	325	mitochondrial F1-ATPase, gamma subunit [	0.996	0.913	0.771	1e-140
15227257	325	ATP synthase subunit gamma [Arabidopsis	0.996	0.913	0.771	1e-140
61675574	324	mitochondrial F1-ATPase gamma subunit [I	0.993	0.913	0.777	1e-140

>gi|255581367|ref|XP_002531492.1| ATP synthase f1, gamma subunit, putative [Ricinus communis] gi|223528879|gb|EEF30879.1| ATP synthase f1, gamma subunit, putative [Ricinus communis]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/326 (81%), Positives = 286/326 (87%), Gaps = 28/326 (8%)

Query: 1   MAMAALRREGRRFATPLISPRPI-AAIRSPFLS--EEDAPLGVRSISTQIVRNRMKSVKN 57
           MAMAALRREGRRFA+PLIS +PI AA+RS  L+  EE AP GVRSISTQ+VRNRMKS+KN
Sbjct: 1   MAMAALRREGRRFASPLISHQPITAAVRSSLLAAAEEQAPFGVRSISTQVVRNRMKSIKN 60

Query: 58  IQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLC 117
           IQKITKAMKMVAASKLRAIQ +AENSRGLWQPFTALLGD P+VD KKNVIVTISSDKGLC
Sbjct: 61  IQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDAPSVDVKKNVIVTISSDKGLC 120

Query: 118 GGINSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNY 152
           GGINST+VK S++LHKL S                         DIEL ITELQKNPLNY
Sbjct: 121 GGINSTSVKTSRALHKLTSGPEKETKYVILGEKAKAQLIRDSKKDIELCITELQKNPLNY 180

Query: 153 TQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS 212
           TQVSVLADDILKNVEF+ALR++++KF SVVSFLPTM+TVLSPE++EREAESGGKLG+LDS
Sbjct: 181 TQVSVLADDILKNVEFEALRVVFNKFQSVVSFLPTMSTVLSPEVMEREAESGGKLGDLDS 240

Query: 213 YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTL 272
           YEIEGGETKGEILQNLAEFQFSCV+FNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTL
Sbjct: 241 YEIEGGETKGEILQNLAEFQFSCVLFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTL 300

Query: 273 TYNRTRQASITTELIEIISGASALEG 298
           TYNRTRQASITTELIEIISGASALEG
Sbjct: 301 TYNRTRQASITTELIEIISGASALEG 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457219|ref|XP_002284053.1| PREDICTED: ATP synthase subunit gamma, mitochondrial [Vitis vinifera] gi|297733875|emb|CBI15122.3| unnamed protein product [Vitis vinifera]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/323 (80%), Positives = 283/323 (87%), Gaps = 26/323 (8%)

Query: 1   MAMAALRREGRRFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQK 60
           MAMAA RREGRRFA PLI+PRPIAA+RS  + EE APLGVRSISTQIVRNRMKSVKNIQK
Sbjct: 1   MAMAAFRREGRRFA-PLITPRPIAAVRSSPIPEEQAPLGVRSISTQIVRNRMKSVKNIQK 59

Query: 61  ITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGI 120
           ITKAMKMVAASKLRAIQ +AENSRGLWQPFT LLGD+P+VD KKNVIVTISSDKGLCGGI
Sbjct: 60  ITKAMKMVAASKLRAIQTRAENSRGLWQPFTVLLGDSPSVDVKKNVIVTISSDKGLCGGI 119

Query: 121 NSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNYTQV 155
           NST+VKISK+LHK  S                         DIEL ITELQKNPLNYTQV
Sbjct: 120 NSTSVKISKALHKFTSGPEKGTKYVVLGEKAKAQLMRDSKKDIELCITELQKNPLNYTQV 179

Query: 156 SVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEI 215
           SVLAD+ILKNVE+DALRI+++KF S++SF+PT +TVLSPE+VEREAE+GGKLG+LDSYEI
Sbjct: 180 SVLADEILKNVEYDALRIVFNKFRSIISFVPTTSTVLSPEVVEREAEAGGKLGDLDSYEI 239

Query: 216 EGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYN 275
           EGGETKGEILQNLAEFQFSCV+FNAVLENACSEQGARMSAMDSSSRNAG+MLDRLTLTYN
Sbjct: 240 EGGETKGEILQNLAEFQFSCVLFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYN 299

Query: 276 RTRQASITTELIEIISGASALEG 298
           RTRQA+ITTEL EIISGASALEG
Sbjct: 300 RTRQAAITTELTEIISGASALEG 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439313|ref|XP_004137430.1| PREDICTED: ATP synthase subunit gamma, mitochondrial-like [Cucumis sativus] gi|449519214|ref|XP_004166630.1| PREDICTED: ATP synthase subunit gamma, mitochondrial-like [Cucumis sativus]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/323 (79%), Positives = 280/323 (86%), Gaps = 26/323 (8%)

Query: 1   MAMAALRREGRRFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQK 60
           MAMAALRREGRR AT +ISP+PI A+RS  L EE APLGVRSISTQ+VR RMKSVKNIQK
Sbjct: 1   MAMAALRREGRRLAT-VISPQPITALRSSLLYEEQAPLGVRSISTQVVRTRMKSVKNIQK 59

Query: 61  ITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGI 120
           ITKAMKMVAASKLRAIQV+ ENSRGLWQPFTALLGD P+VD KKNVIVT+SSDKGLCGGI
Sbjct: 60  ITKAMKMVAASKLRAIQVRTENSRGLWQPFTALLGDNPSVDVKKNVIVTVSSDKGLCGGI 119

Query: 121 NSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNYTQV 155
           NST+VKIS++L K+NS                         DIE+I TELQKNPLNYTQV
Sbjct: 120 NSTSVKISRALRKINSGPEKETKYVVLGEKAKAQLVRDSKKDIEIIFTELQKNPLNYTQV 179

Query: 156 SVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEI 215
           SVLADDILKNVE+DALR++++KF SVVSFLPT AT+LSPE+VEREAESGG L +LDSYEI
Sbjct: 180 SVLADDILKNVEYDALRVVFNKFQSVVSFLPTTATILSPEIVEREAESGGSLCDLDSYEI 239

Query: 216 EGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYN 275
           EGGETK EILQNLAEFQFSCV+FNAVLENACSEQGARMSAMDSSSRNAG+MLDRLTLTYN
Sbjct: 240 EGGETKAEILQNLAEFQFSCVLFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYN 299

Query: 276 RTRQASITTELIEIISGASALEG 298
           RTRQASITTELIEIISGASALEG
Sbjct: 300 RTRQASITTELIEIISGASALEG 322

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130048|ref|XP_002328641.1| predicted protein [Populus trichocarpa] gi|118483625|gb|ABK93707.1| unknown [Populus trichocarpa] gi|222838817|gb|EEE77168.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/324 (78%), Positives = 278/324 (85%), Gaps = 26/324 (8%)

Query: 1   MAMAA-LRREGRRFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQ 59
           MAMAA LRREGRRFA+PLISP+P   +RS  + EE  PLGVRSISTQ+VRNRMKSVKNIQ
Sbjct: 1   MAMAAALRREGRRFASPLISPQPFTPVRSALIPEEHVPLGVRSISTQVVRNRMKSVKNIQ 60

Query: 60  KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGG 119
           KITKAMKMVAASKLR IQ +AE SRGLWQPFTALLGDTP+VD KKNVIVT+SSDKGLCGG
Sbjct: 61  KITKAMKMVAASKLRLIQSRAEKSRGLWQPFTALLGDTPSVDVKKNVIVTVSSDKGLCGG 120

Query: 120 INSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNYTQ 154
           INSTAVK+S++++KL S                          I + +TELQKNPLNYTQ
Sbjct: 121 INSTAVKVSRAINKLTSGPDKETKFVILGEKAKVQLIRDSKKSITICMTELQKNPLNYTQ 180

Query: 155 VSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 214
           VSVLADDILKNVE+DALRI+++KF SVVSFLPTM TVLSPE+VEREAES GKLG+LDSYE
Sbjct: 181 VSVLADDILKNVEYDALRIVFNKFQSVVSFLPTMTTVLSPEVVEREAESDGKLGDLDSYE 240

Query: 215 IEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTY 274
           IEGGETKGEILQNLAEFQFSCV+FNAV+ENACSEQGARMSAMDSSSRNAG+MLDRLTLTY
Sbjct: 241 IEGGETKGEILQNLAEFQFSCVLFNAVMENACSEQGARMSAMDSSSRNAGDMLDRLTLTY 300

Query: 275 NRTRQASITTELIEIISGASALEG 298
           NRTRQASITTEL EIISGA+ALEG
Sbjct: 301 NRTRQASITTELSEIISGAAALEG 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|543867|sp|P26360.2|ATPG3_IPOBA RecName: Full=ATP synthase subunit gamma, mitochondrial; AltName: Full=F-ATPase gamma subunit; Flags: Precursor gi|303626|dbj|BAA03526.1| F1-ATPase gammma subunit [Ipomoea batatas]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/326 (78%), Positives = 278/326 (85%), Gaps = 28/326 (8%)

Query: 1   MAMAALRREGRRFAT-PLISPRPIAAIRSPFLS--EEDAPLGVRSISTQIVRNRMKSVKN 57
           MAMAALRREGRR A  P  SP P+ A+RS  +S  EE    GVRSISTQ+VRNRMKSVKN
Sbjct: 1   MAMAALRREGRRLAAAPFTSPTPLNALRSSLVSPSEEIGLSGVRSISTQVVRNRMKSVKN 60

Query: 58  IQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLC 117
           IQKITKAMKMVAASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLC
Sbjct: 61  IQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLC 120

Query: 118 GGINSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNY 152
           GGINST+VK S+++HKLNS                         DIELIITELQKNPLNY
Sbjct: 121 GGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNY 180

Query: 153 TQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS 212
           TQVSV+ADDILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE+VERE+ESGGKLG+LDS
Sbjct: 181 TQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDS 240

Query: 213 YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTL 272
           YEIEG E+K E+LQNL EFQFS V+FNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTL
Sbjct: 241 YEIEGAESKSEVLQNLTEFQFSSVLFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTL 300

Query: 273 TYNRTRQASITTELIEIISGASALEG 298
           TYNRTRQASITTELIEIISGASALEG
Sbjct: 301 TYNRTRQASITTELIEIISGASALEG 326

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910896|gb|ACF06556.1| mitochondrial ATP synthase gamma chain [Elaeis guineensis]

 Score =  505 bits (1300), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/323 (77%), Positives = 271/323 (83%), Gaps = 25/323 (7%)

Query: 1   MAMAALRREGRRFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQK 60
           MAM ALRREGRRF    +SP P  A RS  LSEE  P G RSISTQ+VRNRMKSVKNIQK
Sbjct: 1   MAMVALRREGRRFLLSPMSPNPATAARSAILSEEFNPSGTRSISTQVVRNRMKSVKNIQK 60

Query: 61  ITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGI 120
           ITKAMKMVAASKLRA+Q++ ENSRGLWQPFTALLGD P+VD KKNVIVTI+SDKGLCGGI
Sbjct: 61  ITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLGDVPSVDVKKNVIVTITSDKGLCGGI 120

Query: 121 NSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNYTQV 155
           NST+VKISKSL+K  S                          IE+ ITELQKNPLNYTQV
Sbjct: 121 NSTSVKISKSLYKFTSGPEKETKYVILGEKGKVQMVRDSKNSIEMSITELQKNPLNYTQV 180

Query: 156 SVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEI 215
           SVLADDILKNVE+DALRII++KFHSVVSF+PT++T+LSPE+VERE+ESGGKLG LDSYEI
Sbjct: 181 SVLADDILKNVEYDALRIIFNKFHSVVSFIPTVSTILSPEVVERESESGGKLGNLDSYEI 240

Query: 216 EGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYN 275
           EGGETK E+LQNLAEFQFSCV+FNA LENACSE GARMSAMDSSSRNAGEMLDRLTLTYN
Sbjct: 241 EGGETKAEVLQNLAEFQFSCVLFNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTYN 300

Query: 276 RTRQASITTELIEIISGASALEG 298
           RTRQASITTELIEIISGASAL G
Sbjct: 301 RTRQASITTELIEIISGASALTG 323

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826751|ref|XP_002881258.1| gamma subunit of mitochondrial F1-ATPase [Arabidopsis lyrata subsp. lyrata] gi|297327097|gb|EFH57517.1| gamma subunit of mitochondrial F1-ATPase [Arabidopsis lyrata subsp. lyrata]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 251/323 (77%), Positives = 276/323 (85%), Gaps = 27/323 (8%)

Query: 1   MAMAALRREGRRFATPLISPRPIAAIRSPFLS-EEDAPLGVRSISTQIVRNRMKSVKNIQ 59
           MAMA  RREGRR   P I+ RPIAAIRSP  S +E+  LGVRSISTQ+VRNRMKSVKNIQ
Sbjct: 1   MAMAVFRREGRRL-LPSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQ 59

Query: 60  KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGG 119
           KITKAMKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGG
Sbjct: 60  KITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGG 119

Query: 120 INSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNYTQ 154
           INST VK+S++L+KLNS                         DI L +TEL KNPLNY Q
Sbjct: 120 INSTVVKVSRALYKLNSGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQ 179

Query: 155 VSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 214
           VSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKLGELDSYE
Sbjct: 180 VSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYE 239

Query: 215 IEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTY 274
           IEGGETKGEILQNLAEFQFSCVMFNAVLENACSE GARMSAMDSSSRNAGEMLDRLTLTY
Sbjct: 240 IEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLTY 299

Query: 275 NRTRQASITTELIEIISGASALE 297
           NRTRQASITTELIEIISGASALE
Sbjct: 300 NRTRQASITTELIEIISGASALE 322

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740981|dbj|BAE98585.1| mitochondrial F1-ATPase, gamma subunit [Arabidopsis thaliana]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/324 (77%), Positives = 276/324 (85%), Gaps = 27/324 (8%)

Query: 1   MAMAALRREGRRFATPLISPRPIAAIRSPFLS-EEDAPLGVRSISTQIVRNRMKSVKNIQ 59
           MAMA  RREGRR   P I+ RPIAAIRSP  S +E+  LGVRSISTQ+VRNRMKSVKNIQ
Sbjct: 1   MAMAVFRREGRRL-LPSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQ 59

Query: 60  KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGG 119
           KITKAMKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGG
Sbjct: 60  KITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGG 119

Query: 120 INSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNYTQ 154
           INST VK+S++L+KLN+                         DI L +TEL KNPLNY Q
Sbjct: 120 INSTVVKVSRALYKLNTGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQ 179

Query: 155 VSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 214
           VSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKLGELDSYE
Sbjct: 180 VSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYE 239

Query: 215 IEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTY 274
           IEGGETKGEILQNLAEFQFSCVMFNAVLENACSE GARMSAMDSSSRNAGEMLDRLTLTY
Sbjct: 240 IEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLTY 299

Query: 275 NRTRQASITTELIEIISGASALEG 298
           NRTRQASITTELIEIISGASALE 
Sbjct: 300 NRTRQASITTELIEIISGASALEA 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227257|ref|NP_180863.1| ATP synthase subunit gamma [Arabidopsis thaliana] gi|3334123|sp|Q96250.1|ATPG3_ARATH RecName: Full=ATP synthase subunit gamma, mitochondrial; AltName: Full=F-ATPase gamma subunit; Flags: Precursor gi|1655480|dbj|BAA13599.1| gamma subunit of mitochondrial F1-ATPase [Arabidopsis thaliana] gi|2924787|gb|AAC04916.1| mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH) [Arabidopsis thaliana] gi|14517358|gb|AAK62570.1| At2g33040/F25I18.22 [Arabidopsis thaliana] gi|17065102|gb|AAL32705.1| mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH) [Arabidopsis thaliana] gi|20196990|gb|AAM14859.1| mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH) [Arabidopsis thaliana] gi|20857422|gb|AAM26719.1| At2g33040/F25I18.22 [Arabidopsis thaliana] gi|21554962|gb|AAM63740.1| mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH) [Arabidopsis thaliana] gi|330253683|gb|AEC08777.1| ATP synthase subunit gamma [Arabidopsis thaliana]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/324 (77%), Positives = 276/324 (85%), Gaps = 27/324 (8%)

Query: 1   MAMAALRREGRRFATPLISPRPIAAIRSPFLS-EEDAPLGVRSISTQIVRNRMKSVKNIQ 59
           MAMA  RREGRR   P I+ RPIAAIRSP  S +E+  LGVRSISTQ+VRNRMKSVKNIQ
Sbjct: 1   MAMAVFRREGRRL-LPSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNIQ 59

Query: 60  KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGG 119
           KITKAMKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGG
Sbjct: 60  KITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGG 119

Query: 120 INSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNYTQ 154
           INST VK+S++L+KLN+                         DI L +TEL KNPLNY Q
Sbjct: 120 INSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQ 179

Query: 155 VSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 214
           VSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKLGELDSYE
Sbjct: 180 VSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYE 239

Query: 215 IEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTY 274
           IEGGETKGEILQNLAEFQFSCVMFNAVLENACSE GARMSAMDSSSRNAGEMLDRLTLTY
Sbjct: 240 IEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLTY 299

Query: 275 NRTRQASITTELIEIISGASALEG 298
           NRTRQASITTELIEIISGASALE 
Sbjct: 300 NRTRQASITTELIEIISGASALEA 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|61675574|dbj|BAD91202.1| mitochondrial F1-ATPase gamma subunit [Ipomoea nil]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/324 (77%), Positives = 274/324 (84%), Gaps = 28/324 (8%)

Query: 3   MAALRREGRRFAT-PLISPRPIAAIRSPFLS--EEDAPLGVRSISTQIVRNRMKSVKNIQ 59
           MAALRREGRR A  PL SP P+ A+RS  +S  EE    GVR ISTQ+VRNRMKSVKNIQ
Sbjct: 1   MAALRREGRRLAAAPLTSPTPLNALRSSLVSPSEEIGSSGVRFISTQVVRNRMKSVKNIQ 60

Query: 60  KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGG 119
           KITKAMKMVAASKLRAIQ + ENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLCGG
Sbjct: 61  KITKAMKMVAASKLRAIQTRTENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGG 120

Query: 120 INSTAVKISKSLHKLNS-------------------------DIELIITELQKNPLNYTQ 154
           INST+VK S++++KLNS                         DIELIITELQKNPLNYTQ
Sbjct: 121 INSTSVKTSRNINKLNSGPEKENKYVILGEKAKAQMVRDSKKDIELIITELQKNPLNYTQ 180

Query: 155 VSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 214
           VSV+ADDILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE VERE+ESGGKLG+LDSYE
Sbjct: 181 VSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEAVERESESGGKLGDLDSYE 240

Query: 215 IEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTY 274
           IEG E+K E+LQNL EFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTY
Sbjct: 241 IEGAESKSEVLQNLTEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTY 300

Query: 275 NRTRQASITTELIEIISGASALEG 298
           NRTRQASITTEL EIISGASALEG
Sbjct: 301 NRTRQASITTELTEIISGASALEG 324

Source: Ipomoea nil

Species: Ipomoea nil

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
TAIR|locus:2046485	325	ATP3 "gamma subunit of Mt ATP	0.543	0.498	0.895	1.2e-125
TIGR_CMR|SPO_3163	291	SPO_3163 "ATP synthase F1, gam	0.469	0.481	0.473	1.7e-38
FB|FBgn0020235	297	ATPsyn-gamma "ATP synthase-gam	0.885	0.888	0.346	2.2e-34
TIGR_CMR|GSU_0112	287	GSU_0112 "ATP synthase F1, gam	0.476	0.494	0.427	7.1e-34
ASPGD|ASPL0000052676	296	AN0252 [Emericella nidulans (t	0.832	0.837	0.329	4.2e-31
UNIPROTKB|P05631	298	ATP5C1 "ATP synthase subunit g	0.785	0.785	0.339	3e-30
UNIPROTKB|J9NZA4	267	J9NZA4 "Uncharacterized protei	0.805	0.898	0.363	1.6e-29
POMBASE|SPBC1734.13	301	atp3 "F1-ATPase gamma subunit	0.795	0.787	0.336	3.4e-29
UNIPROTKB|P36542	298	ATP5C1 "ATP synthase subunit g	0.788	0.788	0.336	7.1e-29
UNIPROTKB|Q4R5B0	298	ATP5C1 "ATP synthase subunit g	0.788	0.788	0.322	1.2e-28

TAIR|locus:2046485 ATP3 "gamma subunit of Mt ATP synthase" [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-125, Sum P(2) = 1.2e-125
 Identities = 145/162 (89%), Positives = 156/162 (96%)

Query:   136 SDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPE 195
             +DI L +TEL KNPLNY QVSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE
Sbjct:   161 NDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPE 220

Query:   196 LVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSA 255
             ++E+E+E GGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSE GARMSA
Sbjct:   221 IIEKESEIGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGARMSA 280

Query:   256 MDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
             MDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE
Sbjct:   281 MDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 322

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA;ISS

GO:0015992 "proton transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TIGR_CMR|SPO_3163 SPO_3163 "ATP synthase F1, gamma subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 291 (107.5 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 71/150 (47%), Positives = 94/150 (62%)

Query:   150 LNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGK 206
             L Y     +A D+L      EFD   I Y+KF +VV+ LPT   ++ P   E E ES   
Sbjct:   149 LGYANAQDIARDVLGRFDAGEFDVATIFYAKFQNVVTQLPTAQQII-PAAFEAEGESD-- 205

Query:   207 LGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEM 266
               E+  ++ E  E    IL +L     +  +F+A+LEN  SEQGARMSAMD+++RNAGEM
Sbjct:   206 --EVALFDYEPSEEA--ILADLLPRGVATQIFSALLENGASEQGARMSAMDNATRNAGEM 261

Query:   267 LDRLTLTYNRTRQASITTELIEIISGASAL 296
             +D+LT+ +NR+RQA IT ELIEIISGA AL
Sbjct:   262 IDKLTIEFNRSRQAVITNELIEIISGAEAL 291

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

FB|FBgn0020235 ATPsyn-gamma "ATP synthase-gamma chain" [Drosophila melanogaster (taxid:7227)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 107/309 (34%), Positives = 180/309 (58%)

Query:    15 TPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKL- 73
             T L+ P    A+ +  L+++    G+ ++  +++  R+KSVKNIQKIT++MKMV+A+K  
Sbjct:     6 TQLLLP---LAMEATMLAQQQR--GMATL--KMISIRLKSVKNIQKITQSMKMVSAAKYA 58

Query:    74 RAIQ-VKAENSRGLW-QPFTALLGDTPTVDAK-KNVIVTISSDKGLCGGINSTAVKI--- 127
             RA + +KA    G+  Q F       P   A+ K +++ ++SD+GLCG +++   ++   
Sbjct:    59 RAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRG 118

Query:   128 ---------------SKS---LHKL-NSDIELIITELQKNPLNYTQVSVLADDILKN-VE 167
                             KS   L +L   +I ++  E+ + P  +   S +A+++L+   +
Sbjct:   119 ELAQDEANTKVFCVGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYD 178

Query:   168 FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQN 227
             +   +I+Y++F SVVS+  +   + S   VE+      KL   DS +        +++++
Sbjct:   179 YTEGKIVYNRFKSVVSYQCSTLPIFSGSTVEKSE----KLAVYDSLD-------SDVVKS 227

Query:   228 LAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELI 287
               EF  + ++F  + E ACSEQ +RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT ELI
Sbjct:   228 YLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELI 287

Query:   288 EIISGASAL 296
             EIISGA+AL
Sbjct:   288 EIISGAAAL 296

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=ISS

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

TIGR_CMR|GSU_0112 GSU_0112 "ATP synthase F1, gamma subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 257 (95.5 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 65/152 (42%), Positives = 96/152 (63%)

Query:   150 LNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGK 206
             L+Y   ++LA ++++     E+D + I+++ F SV+S   T+  +L P  +  EA S  +
Sbjct:   143 LSYPAAALLAQEMIEGYIAEEYDEVYILFNAFKSVMSQDITLEKLL-P--IAPEAASTEE 199

Query:   207 LGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEM 266
                   YE   GE   E+L    E Q    +F A+LE+  SE GARM+AMDS+S+NA EM
Sbjct:   200 YAPEYIYEPSKGELLAELLPKHIEVQ----VFKALLESVASEHGARMTAMDSASKNATEM 255

Query:   267 LDRLTLTYNRTRQASITTELIEIISGASALEG 298
             + +LTL YNR RQA+ITTEL+EIISGA +++G
Sbjct:   256 IGKLTLQYNRARQAAITTELMEIISGAESIKG 287

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045262 "plasma membrane proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

ASPGD|ASPL0000052676 AN0252 [Emericella nidulans (taxid:162425)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 94/285 (32%), Positives = 155/285 (54%)

Query:    36 APLGVRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL 94
             AP    + +T + +  R+KS+KNI+KIT  MK++A+++L   Q   ++SR   Q    L 
Sbjct:    21 APPNAANFATLREIEGRLKSIKNIKKITNTMKVIASTRLTRAQKAMDDSRAYGQTSNTLF 80

Query:    95 --GDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSDIELII------TELQ 146
                +T  ++ KK ++V  SSDKGLCGGI+S   K ++   + N + +L++       +L 
Sbjct:    81 EQAETKALEDKKTLLVVASSDKGLCGGIHSGLSKAARRALEANPNSDLVVLGEKAKAQLS 140

Query:   147 K-NP----LNYTQV----------SVLADDI-LKNVEFDALRIIYSKFHSVVSFLPTMAT 190
             + NP    L++  V            +AD I L   ++ ++++IY+KF +  S+ P    
Sbjct:   141 RTNPNAIVLSFANVCKDIPTFADAQAVADQIALLPTDYASVKVIYNKFVNAQSYEPDTVE 200

Query:   191 VLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQG 250
               S E + +            +YE +      E L NL E+  +  +F A+ E    E  
Sbjct:   201 AYSEEAITQSPN-------FSAYEADE-----ETLSNLREYALANSLFWAMAEGHACEIS 248

Query:   251 ARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASA 295
             AR +AM+++S+NAGEM+D+  + YNR RQA+IT EL+EII+GA+A
Sbjct:   249 ARRNAMENASKNAGEMIDKFQILYNRQRQAAITGELVEIITGAAA 293

GO:0006091 "generation of precursor metabolites and energy" evidence=RCA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA;RCA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0005756 "mitochondrial proton-transporting ATP synthase, central stalk" evidence=IEA

UNIPROTKB|P05631 ATP5C1 "ATP synthase subunit gamma, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 94/277 (33%), Positives = 155/277 (55%)

Query:    48 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVI 107
             ++N  K  K+++ +  A    A  +L+  +V    S  L++        TP  D KK++I
Sbjct:    38 IKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADI---KTPE-DKKKHLI 93

Query:   108 VTISSDKGLCGGINSTAVKISKS------------------------LHKLNSDIELIIT 143
             + +SSD+GLCG I+S+  K  KS                        LH+ +SD + ++T
Sbjct:    94 IGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSD-QFLVT 152

Query:   144 --ELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVERE 200
               E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S + +   
Sbjct:   153 FKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTIS-S 211

Query:   201 AESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSS 260
             AES     ++D+          ++L+N  E+  + +++ ++ E+  SEQ ARM+AMD++S
Sbjct:   212 AESMSIYDDIDA----------DVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNAS 261

Query:   261 RNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
             +NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct:   262 KNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|J9NZA4 J9NZA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 96/264 (36%), Positives = 158/264 (59%)

Query:    40 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL--GD 96
             VR++ T + +  ++KS+KNIQKI  +MKMVAA+K    + + + ++     F AL    D
Sbjct:    22 VRNMVTLKDITRQLKSIKNIQKIPTSMKMVAAAKYALAEGELKPAQVYGIGFLALYEKAD 81

Query:    97 TPTVD-AKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSDIELIITELQKNPL-NYTQ 154
                 +  KK++++ +SSD+GLC  I+S+   ++K +    + +E    E+    + +   
Sbjct:    82 IKMPENKKKHLLIGVSSDRGLC--IHSS---VAKQMKNEVAPLEAAGKEVMLIGIGDKID 136

Query:   155 VSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSY 213
              SV+A ++L +  E D    IY++F SV+S+  T   + S E V   AES     ++D+ 
Sbjct:   137 ASVIALELLNSGYECDE-GSIYNRFRSVISY-KTEKPIFSLETVA-SAESMSIYDDIDA- 192

Query:   214 EIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLT 273
                      ++LQN  E+  + +++ ++ E+  SEQ AR +AMD++S+NA EM+D+LTLT
Sbjct:   193 ---------DVLQNYQEYNLANIIYYSLKESTTSEQSARTTAMDTASKNASEMIDKLTLT 243

Query:   274 YNRTRQASITTELIEIISGASALE 297
             +N TRQA IT ELIEIISGA+AL+
Sbjct:   244 FNCTRQAVITKELIEIISGAAALD 267

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

POMBASE|SPBC1734.13 atp3 "F1-ATPase gamma subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 93/276 (33%), Positives = 157/276 (56%)

Query:    48 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD--TPTVDAKKN 105
             +  R+KS+KNI+KITK +K VA +KL   Q   E S   ++    +  +  T   +  K 
Sbjct:    37 IEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEGKT 96

Query:   106 VIVTISSDKGLCGGINSTAVK-ISKSLH--KL--NSDI----ELIITELQKN-P----LN 151
             ++V  SSDKGLCGGI+S+  + I + LH  K   N+ +    E + T+L +  P    L 
Sbjct:    97 LMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLRFCPESFYLT 156

Query:   152 YTQVS----------VLADDILKNV-EFDALRIIYSKFHSVVSFLPTMATVLSPELVERE 200
             +  +            ++ +IL++  ++D + ++Y+KF S VSF   M  + + + +   
Sbjct:   157 FAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAIN-- 214

Query:   201 AESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSS 260
              ES      L +YE+       E+ Q L EF F+  +F+A+ E  CSE  +R +AM+++S
Sbjct:   215 -ESPN----LSAYEVSD-----EVHQPLMEFAFANAIFSAMAEAHCSEMSSRRNAMENAS 264

Query:   261 RNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
             ++AG+M+++ ++ YNR RQASIT ELI+I++GA++L
Sbjct:   265 KSAGDMINKFSIQYNRQRQASITNELIDIVTGANSL 300

GO:0005739 "mitochondrion" evidence=IDA

GO:0005756 "mitochondrial proton-transporting ATP synthase, central stalk" evidence=ISS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS

UNIPROTKB|P36542 ATP5C1 "ATP synthase subunit gamma, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 93/276 (33%), Positives = 153/276 (55%)

Query:    48 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVI 107
             ++N  K  K+++ +  A    A  +L+  ++    S  L++    + G  P  D KK+++
Sbjct:    38 IKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEK-ADIKG--PE-DKKKHLL 93

Query:   108 VTISSDKGLCGGINSTAVKISKS------------------------LHKLNSDIELI-I 142
             + +SSD+GLCG I+S+  K  KS                        L++ +SD  L+  
Sbjct:    94 IGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAF 153

Query:   143 TELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREA 201
              E+ + P  +   SV+A ++L +  EFD   II++KF SV+S+      + S   V   A
Sbjct:   154 KEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVA-SA 212

Query:   202 ESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSR 261
             +S     ++D+          ++LQN  E+  + +++ ++ E+  SEQ ARM+AMD++S+
Sbjct:   213 DSMSIYDDIDA----------DVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASK 262

Query:   262 NAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
             NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct:   263 NASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS;NAS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=NAS;IDA

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=NAS

GO:0006119 "oxidative phosphorylation" evidence=NAS

GO:0006754 "ATP biosynthetic process" evidence=NAS

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=NAS;IDA

UNIPROTKB|Q4R5B0 ATP5C1 "ATP synthase subunit gamma, mitochondrial" [Macaca fascicularis (taxid:9541)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 89/276 (32%), Positives = 153/276 (55%)

Query:    48 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVI 107
             ++N  K  K+++ +  A    A  +L+  ++    S  L++     + +    D KK+++
Sbjct:    38 IKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKVPE----DKKKHLL 93

Query:   108 VTISSDKGLCGGINSTAVKISKS------------------------LHKLNSDIELI-I 142
             + +SSD+GLCG I+S+  K  KS                        L++ +SD  L+  
Sbjct:    94 IGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAF 153

Query:   143 TELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREA 201
              E+ + P  +   SV+A ++L +  EFD   +I+++F SV+S+      + S   +   A
Sbjct:   154 KEVGRKPPTFGDASVIALELLNSGYEFDEGSVIFNRFRSVISYKTEEKPIFSLNTIA-SA 212

Query:   202 ESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSR 261
             ES     ++D+          ++LQN  E+  + +++ ++ E++ SEQ ARM+AMD++S+
Sbjct:   213 ESMSIYDDIDA----------DVLQNYQEYNLANIIYYSLKESSTSEQSARMTAMDNASK 262

Query:   262 NAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
             NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct:   263 NASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9WWS3	ATPG_BRUSI	No assigned EC number	0.3670	0.8255	0.8424	yes	no
P26360	ATPG3_IPOBA	No assigned EC number	0.7822	1.0	0.9141	N/A	no
Q5NQZ0	ATPG_ZYMMO	No assigned EC number	0.3145	0.8288	0.8288	yes	no
Q8UC75	ATPG_AGRT5	No assigned EC number	0.3986	0.8187	0.8356	yes	no
B9LZ85	ATPG_GEOSF	No assigned EC number	0.3578	0.8087	0.8397	yes	no
A8LJR5	ATPG_DINSH	No assigned EC number	0.3707	0.8020	0.8241	yes	no
Q28TJ7	ATPG_JANSC	No assigned EC number	0.3737	0.8120	0.8175	yes	no
A5FZ53	ATPG_ACICJ	No assigned EC number	0.3581	0.8422	0.8479	yes	no
Q39Q55	ATPG_GEOMG	No assigned EC number	0.3479	0.8187	0.8501	yes	no
Q4FP37	ATPG_PELUB	No assigned EC number	0.3698	0.8120	0.8316	yes	no
B4RD46	ATPG_PHEZH	No assigned EC number	0.3515	0.8053	0.8275	yes	no
P05631	ATPG_BOVIN	No assigned EC number	0.3767	0.8154	0.8154	yes	no
Q5LNP0	ATPG_RUEPO	No assigned EC number	0.3664	0.8120	0.8316	yes	no
A3PIB8	ATPG_RHOS1	No assigned EC number	0.3657	0.8120	0.8373	yes	no
Q96250	ATPG3_ARATH	No assigned EC number	0.7716	0.9966	0.9138	yes	no
A1B8N9	ATPG_PARDP	No assigned EC number	0.3691	0.8154	0.8379	yes	no
Q91VR2	ATPG_MOUSE	No assigned EC number	0.3595	0.8154	0.8154	yes	no
A9M838	ATPG_BRUC2	No assigned EC number	0.3703	0.8255	0.8424	yes	no
Q21CY6	ATPG_RHOPB	No assigned EC number	0.3527	0.8154	0.8321	yes	no
Q11DD6	ATPG_MESSB	No assigned EC number	0.3728	0.8255	0.8482	yes	no
Q92LK7	ATPG_RHIME	No assigned EC number	0.375	0.8355	0.8469	yes	no
B0UE40	ATPG_METS4	No assigned EC number	0.3812	0.8187	0.8356	yes	no
Q74GY1	ATPG_GEOSL	No assigned EC number	0.3479	0.8187	0.8501	yes	no
A5VSE2	ATPG_BRUO2	No assigned EC number	0.3670	0.8255	0.8424	yes	no
Q3J432	ATPG_RHOS4	No assigned EC number	0.3624	0.8120	0.8373	yes	no
Q2VZN1	ATPG_MAGSA	No assigned EC number	0.3561	0.8221	0.8333	yes	no
B3PQ69	ATPG_RHIE6	No assigned EC number	0.3678	0.8255	0.8367	yes	no
P07227	ATPG_RHORU	No assigned EC number	0.3491	0.8288	0.8260	yes	no
A7HT51	ATPG_PARL1	No assigned EC number	0.3952	0.8355	0.8469	yes	no
Q8FYR4	ATPG_BRUSU	No assigned EC number	0.3670	0.8255	0.8424	yes	no
O01666	ATPG_DROME	No assigned EC number	0.3485	0.8221	0.8249	yes	no
Q162S8	ATPG_ROSDO	No assigned EC number	0.3557	0.8187	0.8384	yes	no
A5G9D7	ATPG_GEOUR	No assigned EC number	0.3255	0.8120	0.8432	yes	no
Q1GEU7	ATPG_RUEST	No assigned EC number	0.3724	0.8187	0.8384	yes	no
Q2RV19	ATPG_RHORT	No assigned EC number	0.3491	0.8288	0.8260	yes	no
Q98EV7	ATPG_RHILO	No assigned EC number	0.3783	0.8355	0.8469	yes	no
B8IN02	ATPG_METNO	No assigned EC number	0.3812	0.8187	0.8356	yes	no
B9KPI7	ATPG_RHOSK	No assigned EC number	0.3657	0.8120	0.8373	yes	no
P36542	ATPG_HUMAN	No assigned EC number	0.3732	0.8154	0.8154	yes	no
A4WUM8	ATPG_RHOS5	No assigned EC number	0.3712	0.8087	0.8339	yes	no
P72246	ATPG_RHOCA	No assigned EC number	0.3489	0.8154	0.8379	yes	no
A7IH30	ATPG_XANP2	No assigned EC number	0.3515	0.8087	0.8281	yes	no
B7KUA3	ATPG_METC4	No assigned EC number	0.3952	0.8422	0.8479	yes	no
B1ZEE8	ATPG_METPB	No assigned EC number	0.3783	0.8389	0.8474	yes	no
B5ZSN8	ATPG_RHILW	No assigned EC number	0.3648	0.8355	0.8469	yes	no
A9W2R2	ATPG_METEP	No assigned EC number	0.3952	0.8422	0.8479	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016204001	RecName- Full=ATP synthase gamma chain;; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex (By similarity) (322 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	atp1	RecName- Full=ATP synthase subunit alpha;; Produces ATP from ADP in the presence of a proton gr [...] (495 aa)	•		•	•	•	•	•		0.974
	atpA	RecName- Full=ATP synthase subunit alpha; Short=ATPase subunit alpha; EC=3.6.3.14; AltName- Ful [...] (507 aa)	•		•	•	•	•	•		0.970
	GSVIVG00030440001	RecName- Full=ATP synthase subunit beta; EC=3.6.3.14;; Produces ATP from ADP in the presence of [...] (560 aa)	•		•	•	•	•	•		0.966
	GSVIVG00017772001	RecName- Full=ATP synthase subunit beta; EC=3.6.3.14;; Produces ATP from ADP in the presence of [...] (554 aa)	•		•	•	•	•	•		0.960
	GSVIVG00013522001	SubName- Full=Chromosome undetermined scaffold_495, whole genome shotgun sequence; (285 aa)				•		•			0.923
	GSVIVG00019017001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (206 aa)	•			•	•	•	•		0.908
	GSVIVG00028809001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (251 aa)	•		•	•	•	•	•		0.905
	GSVIVG00029599001	SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (849 aa)						•			0.899
	GSVIVG00026188001	SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_37, whole genome shot [...] (222 aa)						•			0.899
	GSVIVG00024902001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (232 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	298
TIGR01146	286	TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma	5e-91
cd12151	282	cd12151, F1-ATPase_gamma, mitochondrial ATP syntha	6e-86
pfam00231	288	pfam00231, ATP-synt, ATP synthase	1e-80
PRK05621	284	PRK05621, PRK05621, F0F1 ATP synthase subunit gamm	8e-72
COG0224	287	COG0224, AtpG, F0F1-type ATP synthase, gamma subun	3e-68
PRK13423	288	PRK13423, PRK13423, F0F1 ATP synthase subunit gamm	1e-54
PRK13424	291	PRK13424, PRK13424, F0F1 ATP synthase subunit gamm	4e-39
PRK13425	291	PRK13425, PRK13425, F0F1 ATP synthase subunit gamm	7e-34
PRK13426	291	PRK13426, PRK13426, F0F1 ATP synthase subunit gamm	4e-33
PRK14110	291	PRK14110, PRK14110, F0F1 ATP synthase subunit gamm	3e-31
PRK14111	290	PRK14111, PRK14111, F0F1 ATP synthase subunit gamm	5e-30
PRK13427	289	PRK13427, PRK13427, F0F1 ATP synthase subunit gamm	2e-29
PRK13422	298	PRK13422, PRK13422, F0F1 ATP synthase subunit gamm	7e-26
TIGR03323	285	TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase,	6e-10

>gnl|CDD|233292 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma subunit

 Score =  271 bits (695), Expect = 5e-91
 Identities = 111/292 (38%), Positives = 165/292 (56%), Gaps = 46/292 (15%)

Query: 44  STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV--- 100
           S + +R R+KSVKN QKITKAMKMVAASKLR  Q +AE +R   +   A+LG+  +    
Sbjct: 2   SLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLASKLLN 61

Query: 101 ---------DAKKNVIVTISSDKGLCGGINSTAVKISKS--------------------- 130
                    + KK  I+ I+SD+GLCGG NS  +K  ++                     
Sbjct: 62  VDHPLLKSREVKKVGILVITSDRGLCGGYNSNVLKRVRARAKELKAAGKEVKLVVIGRKG 121

Query: 131 ---LHKLNSDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSF 184
                +   +I   +T L  +   + + S +AD +L    + EFD + I+Y+KF SV+S 
Sbjct: 122 RSFFKRRGDNIVASVTGL-SDQPTFEEASGIADKLLDAFDSGEFDEVYIVYNKFVSVISQ 180

Query: 185 LPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLEN 244
            PT+  +L   L E+  + G K  +   +E +    + EIL +L        ++ A+LE+
Sbjct: 181 EPTVKQLLP--LSEQGPDEGFKFSQDYIFEPD----EEEILDDLLPRYLESQIYGALLES 234

Query: 245 ACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           A SEQ ARM+AMD+++ NAG+++ +LTL+YNR RQA+IT ELIEI++GASAL
Sbjct: 235 AASEQAARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGASAL 286

This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP [Energy metabolism, ATP-proton motive force interconversion]. Length = 286

>gnl|CDD|213394 cd12151, F1-ATPase_gamma, mitochondrial ATP synthase gamma subunit

 Score =  258 bits (662), Expect = 6e-86
 Identities = 105/286 (36%), Positives = 155/286 (54%), Gaps = 41/286 (14%)

Query: 44  STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD------- 96
           S + ++ R+KSVKN QKITKAMKMVAA+KLR  Q   E +R   +    +L         
Sbjct: 2   SLKEIKRRIKSVKNTQKITKAMKMVAAAKLRKAQRALEAARPYAEKLEEVLQRLLSSLDD 61

Query: 97  -----TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKS--------------------- 130
                    + KK +++ I+SD+GLCGG NS  +K ++                      
Sbjct: 62  EDPPLLEKREVKKVLLIVITSDRGLCGGFNSNIIKAAEELIKEADGKEVKLIVVGKKGRD 121

Query: 131 -LHKLNSDIELIITELQKNPLNYTQVSVLADDILK--NVEFDALRIIYSKFHSVVSFLPT 187
            L +   +I L  +++  +P  +   S++ + IL   N E D + IIY+KF S +S  P 
Sbjct: 122 YLKRRGYNIALPFSDIGDDPTYFEAASIIEELILDFLNGEIDEVYIIYNKFKSAISQEPV 181

Query: 188 MATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACS 247
           +  +L  +  E E ES G   +   Y  E      E+L  L  F  + +++ A+LE+  S
Sbjct: 182 VEQLLPLDKEEEEEESEGSRSD---YIFE--PDPEEVLDALLPFYLASLLYRALLESLAS 236

Query: 248 EQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGA 293
           EQ ARM+AMD+++ NAGE++D+LTL YNR RQA+IT ELIEI+SGA
Sbjct: 237 EQAARMTAMDNATDNAGELIDKLTLEYNRARQAAITQELIEIVSGA 282

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. Length = 282

>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase

 Score =  245 bits (627), Expect = 1e-80
 Identities = 100/293 (34%), Positives = 152/293 (51%), Gaps = 46/293 (15%)

Query: 44  STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD------- 96
           S + ++ R+KSVKN QKITKAMKMVAASKLR  Q + E +R   +    +L +       
Sbjct: 2   SLKEIKRRIKSVKNTQKITKAMKMVAASKLRKAQERLEAARPYAEKIREVLAELAAASED 61

Query: 97  ------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKS-------------------- 130
                       KK +++ I+SD+GLCGG NS  +K +                      
Sbjct: 62  IKHPLLEQREVVKKVLLIVITSDRGLCGGFNSNVIKAALELIKELKAEGKEVDLIVIGKK 121

Query: 131 ----LHKLNSDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVS 183
                 +   +I    T L   P  + + + +AD++++   N E+D + ++Y+KF + +S
Sbjct: 122 GRDFFKRRGKNIIAEFTGLGDKP-TFEEAAEIADELIELFLNGEYDEVYLVYNKFVNALS 180

Query: 184 FLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLE 243
             PT+  +L  ++ E E E      +   YE E      E+L  L        ++ A+LE
Sbjct: 181 QEPTVEQLLPIDIEEEEEEEAESRAD---YEYEPDAE--EVLDALLPRYLESQLYRALLE 235

Query: 244 NACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           +  SE  ARM+AMD+++ NA E++ +LTL YNR RQA+IT ELIEI+SGA AL
Sbjct: 236 SLASEHAARMTAMDNATDNAKELIKKLTLQYNRARQAAITQELIEIVSGAEAL 288

Length = 288

>gnl|CDD|235535 PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated

 Score =  222 bits (569), Expect = 8e-72
 Identities = 110/294 (37%), Positives = 151/294 (51%), Gaps = 63/294 (21%)

Query: 49  RNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPF------------TALLGD 96
           R R+KSVKN QKITKAM+MVAASKLR  Q +AE SR    P+            +A   D
Sbjct: 8   RRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASR----PYAEKIRKVISHLASASEYD 63

Query: 97  TP---TVDAKKNVIVTISSDKGLCGGINSTAVKIS----KSLHKLNSDIELII------- 142
            P     + K+   + ++SD+GLCGG NS  +K      K L     +++LI+       
Sbjct: 64  HPLLVEREVKRVGYIVVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVD 123

Query: 143 -------------TELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLP 186
                        T L   P  + +   +A  +L    N EFD L I+Y+KF + +S  P
Sbjct: 124 FFKRRGINVVAEYTGLGDQP-TFEEAIGIAKKLLDAYDNGEFDELYIVYNKFVNTLSQEP 182

Query: 187 TMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNL----AEFQFSCVMFNAVL 242
           T+  +L  E  E E E+         YE E      EIL  L     E Q    ++ A+L
Sbjct: 183 TVEQLLPLEKEEEEEETSW------DYEYEPDAE--EILDALLPRYVESQ----IYQALL 230

Query: 243 ENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           EN  SEQ ARM+AM +++ NAG+++ +LTL YNR RQA+IT E+ EI+ GA AL
Sbjct: 231 ENKASEQAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEAL 284

Length = 284

>gnl|CDD|223302 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy production and conversion]

 Score =  213 bits (545), Expect = 3e-68
 Identities = 106/290 (36%), Positives = 154/290 (53%), Gaps = 45/290 (15%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD----------- 96
           +R ++KSVKN QKITKAM+MVAASKLR  Q +AE +R   +    +LG            
Sbjct: 3   IRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASANLELDHP 62

Query: 97  --TPTVDAKKNVIVTISSDKGLCGGINS----TAVKISKSLHKLNSDIELII-------- 142
              PT + K+ + + I+SD+GLCGG NS        + K L     +++LI+        
Sbjct: 63  LLKPTREVKRVLYIVITSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDF 122

Query: 143 ------------TELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPT 187
                       T L  NP ++ +   +AD IL      E D L ++Y+KF + +S  PT
Sbjct: 123 FKKRGYNILESFTGLGDNP-SFEEAIQIADKILDAFLEGEIDELYLVYNKFKNALSQEPT 181

Query: 188 MATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACS 247
           +  +L   L + E E+  +   L  YE E      EIL+ L        ++ A+LE+  S
Sbjct: 182 VQQLL--PLDKIEDEAEEEEPGLWDYEFEPDAE--EILETLLPRYLESQLYGALLESKAS 237

Query: 248 EQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
           E  ARM+AM +++ NAG+++  LTL YN+ RQA+IT ELIEI+ GA ALE
Sbjct: 238 EHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEALE 287

Length = 287

>gnl|CDD|237384 PRK13423, PRK13423, F0F1 ATP synthase subunit gamma; Provisional

 Score =  178 bits (454), Expect = 1e-54
 Identities = 103/293 (35%), Positives = 158/293 (53%), Gaps = 53/293 (18%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT---------- 97
           ++ R+ SVKN ++ITKAMKMV+A+KLR  Q     +R    P+ A LG+           
Sbjct: 7   IKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAAR----PYAAKLGEVLGSLAARAGE 62

Query: 98  ---PTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSD--IELIIT------ 143
              P +   + KK ++V ++SD+GLCGG NS   K ++   K N D   E+ +T      
Sbjct: 63  DAHPLLVPREVKKALLVVVTSDRGLCGGFNSNLCKAAERFLKENKDEFEEISLTTVGRKG 122

Query: 144 -ELQKN--------------PLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFL 185
            E  KN               L Y   ++LA ++++     E+D + ++Y++F SV+S  
Sbjct: 123 REFLKNRGLIIRKNYGGVVANLTYETAALLAQELIEGYLAGEYDEVYLVYNEFKSVMSQD 182

Query: 186 PTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENA 245
            T+  +L    ++    +  +      YE        E+L    E Q    ++ A+LE+ 
Sbjct: 183 ITVQQLLP---IDPPEAADDEYLPEYIYEPSRDALLAELLPKHVEVQ----IYRALLESV 235

Query: 246 CSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 298
            SE GARM+AMDS+++NA EM+ +LTL YNR RQA+ITTEL+EI+SGA AL+G
Sbjct: 236 ASEHGARMTAMDSATKNATEMIGKLTLQYNRARQAAITTELMEIVSGAEALKG 288

Length = 288

>gnl|CDD|172047 PRK13424, PRK13424, F0F1 ATP synthase subunit gamma; Provisional

 Score =  138 bits (349), Expect = 4e-39
 Identities = 88/292 (30%), Positives = 143/292 (48%), Gaps = 48/292 (16%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT---------P 98
           V+ ++  VK  ++ITKAM MVA++KLR  Q + E  R   + F  +LGD          P
Sbjct: 7   VKVKIAGVKKTKQITKAMNMVASAKLRGAQQRIERFRPYAEKFYDMLGDLASRADSSAHP 66

Query: 99  TVDAKKNV----IVTISSDKGLCGGINS----TAVKISKSLHKLNSDIEL---------- 140
            ++ ++ +    IV I+SD+GLCG  N+     A+K++K        ++           
Sbjct: 67  LLEVREEIKTCGIVLITSDRGLCGSFNANLINAALKLAKQKTAEGKTVKFYCVGKKGRDA 126

Query: 141 -------IITEL--QKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTM 188
                  I+T    Q    ++   + +  +++      E D + ++Y +F S+   LP  
Sbjct: 127 IRKTDFEIVTAYADQMTSFDFQLANSIGLEVIDGYLTGELDEVVLVYGEFVSMARQLPIT 186

Query: 189 ATVLSPELVEREAESGGKLGELDSYEIEGGETK--GEILQNLAEFQFSCVMFNAVLENAC 246
             +L     E E E  G   E   Y  E        E+L    + Q    ++  +L+ + 
Sbjct: 187 LQILPIAPEEAEEEEAGASSE---YIYEPSVEGLLAELLPRFIKVQ----IYRGLLDTSA 239

Query: 247 SEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 298
           SE  ARM+AMD+++RN  +M+  LTL YN+TRQASIT EL++I+ GA AL+G
Sbjct: 240 SEHAARMTAMDNATRNCDDMIGSLTLLYNKTRQASITRELMDIVGGAEALKG 291

Length = 291

>gnl|CDD|139564 PRK13425, PRK13425, F0F1 ATP synthase subunit gamma; Provisional

 Score =  124 bits (314), Expect = 7e-34
 Identities = 93/294 (31%), Positives = 147/294 (50%), Gaps = 52/294 (17%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG------DT---- 97
           +R R+K VK+ Q++TKAMKMVAA+KLR  Q +A  +R        +LG      DT    
Sbjct: 7   IRVRIKGVKSTQQVTKAMKMVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVDTSLNP 66

Query: 98  ---PTVDAKKNVIVTISSDKGLCGGINSTAVKIS-KSLHKLNSD------IELI------ 141
              P  +  K +++ I+SD+GLCG  N+  +K++ K +H+  +       + +I      
Sbjct: 67  LLSPRSEVNKVLVILITSDRGLCGAFNTNIIKLAQKVIHEDYAALHAKGGVSMICAGTRG 126

Query: 142 ----------ITELQKNPLNYTQVSV------LADDILKNVEFDALRIIYSKFHSVVSFL 185
                     I +           SV       A  +    E D + ++Y++F SV++  
Sbjct: 127 FDFFRKRGYNIVKGYPGVFQNLDFSVAKEIAETASGMYLRGEVDKVVVVYNEFKSVLA-- 184

Query: 186 PTM-ATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLEN 244
           P + + VL P   E+    GG       Y  E   +   I+  L     +  ++  +LE+
Sbjct: 185 PNLKSEVLLPITPEKPGAEGG-----SDYIYE--PSPAAIIDELVPKHLNTQVWRMMLES 237

Query: 245 ACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 298
             +EQ ARM+AMDS++ NA E+L  L ++YNR RQA+IT EL EI++GA AL+G
Sbjct: 238 NAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVAGADALQG 291

Length = 291

>gnl|CDD|237385 PRK13426, PRK13426, F0F1 ATP synthase subunit gamma; Provisional

 Score =  122 bits (308), Expect = 4e-33
 Identities = 86/289 (29%), Positives = 137/289 (47%), Gaps = 44/289 (15%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAEN----SRGLWQPFTALLGDTPTVDA- 102
           ++ R+ SV++ +KIT AMKMVA++KL   Q   EN     R L    T  L     V++ 
Sbjct: 7   IKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADLDVESP 66

Query: 103 -------KKNVIVTISSDKGLCGGINSTAV-------------------------KISKS 130
                  K+  IV  SS+  LCGG N+  +                         KI ++
Sbjct: 67  FTVERPVKRVAIVVFSSNTSLCGGFNANIIKLLLQTIGEYRTLGQDNILIYPVGKKIEEA 126

Query: 131 LHKLNSDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPT 187
           + KL   ++     L   P +Y + + LA  +++     E D + +IY  F S+   + T
Sbjct: 127 VKKLGFKVQGDYQTLADKP-SYEEAAALAMRLMELFLEGEIDKVELIYHHFKSMGVQVLT 185

Query: 188 MATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACS 247
             T L P  + +E  +    G  + Y IE   +   +L +L     S  ++ A+L++  S
Sbjct: 186 RETYL-PIDLSQEKNAEHAGGVANDYIIE--PSADTVLNDLIPKLLSLKIYTALLDSNAS 242

Query: 248 EQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           E  ARM AM  ++ NA E+L  LTL YN++RQ +IT EL++I+ G+ A 
Sbjct: 243 EHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGGSMAN 291

Length = 291

>gnl|CDD|184514 PRK14110, PRK14110, F0F1 ATP synthase subunit gamma; Provisional

 Score =  117 bits (295), Expect = 3e-31
 Identities = 83/294 (28%), Positives = 147/294 (50%), Gaps = 45/294 (15%)

Query: 43  ISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT--- 99
           +S + ++ +++ +KN ++IT AMK+V+A+KLR  Q     SR   +    L+ D      
Sbjct: 4   LSPRDIKRKIQGIKNTRRITNAMKVVSAAKLRKAQELLYASRPYSEKLYELISDLAAHID 63

Query: 100 --------VDAKKNV-IVTISSDKGLCGGINS----TAVKISKSLHKLNSDIELIIT--- 143
                      +KNV +V I++D+GL G  NS    TA ++ +        + LI+    
Sbjct: 64  RESHPLLERREEKNVDLVIITADRGLAGAFNSNVIKTAERLIQEKQSEGVRVNLILIGRK 123

Query: 144 -----------------ELQKNPLNYTQVSVLADDI---LKNVEFDALRIIYSKFHSVVS 183
                            ++ +  +N++ V  +   +       E DA+ +I ++  +  +
Sbjct: 124 GVQYFSKRGYNIIKSYEDVFRKEINFSVVKEVGGILASRYIEEETDAVYLINNEMITRAT 183

Query: 184 FLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLE 243
           + P +   L     E EA+   KL EL  Y IE  E   E L  L +   +  ++ A++E
Sbjct: 184 YKPKVRKFLP---FEVEAQEK-KLDELSVYNIEVSEE--EFLDKLLQLYLNYQLYRALVE 237

Query: 244 NACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
           +  +E  ARM AMD+++RNAGE++ + TL +N+ RQ +ITTELI+I++ A A++
Sbjct: 238 SNAAEHFARMVAMDNATRNAGELIRKWTLIFNKARQEAITTELIDIVNAAEAMK 291

Length = 291

>gnl|CDD|184515 PRK14111, PRK14111, F0F1 ATP synthase subunit gamma; Provisional

 Score =  114 bits (287), Expect = 5e-30
 Identities = 86/298 (28%), Positives = 143/298 (47%), Gaps = 53/298 (17%)

Query: 44  STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT------ 97
           ST+ +R R++SVKN  +IT+AM+MV+ASK+R  Q     +R        ++GD       
Sbjct: 3   STREIRRRIRSVKNTAQITRAMEMVSASKMRRAQRNVLATRPYADRIRDVMGDLTARTVG 62

Query: 98  -----------PTVDAKKNVIVTISSDKGLCGGINS----TAVKISKSLHKLNSDIELI- 141
                      PTV  K+  ++ ++ D+GL G +N+     A++       +   +++I 
Sbjct: 63  AARVGPLLEKRPTV--KRVALILVTPDRGLAGSLNANVLRRAIRFITDERSMGRTVDVIA 120

Query: 142 -------------------ITELQKNP--LNYTQVSVLADDILKNVEFDALRIIYSKFHS 180
                               T L   P       V+  A +  ++ ++D + ++YS+F +
Sbjct: 121 IGRKGRDFMVRTGQALVAEFTRLGDAPKLEAILPVATSAINGFQSGKYDEVYVLYSEFIN 180

Query: 181 VVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNA 240
            +   PT+  +L    +E    S   + +  +YE    E    +L    E Q    ++ A
Sbjct: 181 TLVQRPTIKQLLP---IEPPEISTTTVVDY-TYEPSPEEVLRALLPRFVEVQ----LYQA 232

Query: 241 VLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 298
           VLE+  SE  ARM AM +++ NA E++  LTLTYN+ RQA+IT E+ EI SGA+AL  
Sbjct: 233 VLESIASEHSARMVAMRNATDNAKELVRDLTLTYNKARQAAITKEVSEIASGAAALGS 290

Length = 290

>gnl|CDD|172049 PRK13427, PRK13427, F0F1 ATP synthase subunit gamma; Provisional

 Score =  113 bits (283), Expect = 2e-29
 Identities = 80/294 (27%), Positives = 127/294 (43%), Gaps = 55/294 (18%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA----- 102
           ++ R+ SVKN +KIT+ M+MV+ +K +    +   +     P+   + +  +  A     
Sbjct: 7   IKKRINSVKNTRKITRTMEMVSTAKSKKATDRVNAAH----PYANKIKELVSSLASLEGV 62

Query: 103 ------------KKNVIVTISSDKGLCGGINSTAVKISKS----LHKLNSDIELII---- 142
                       +   ++ I++++GLCGG NS   +++K+    L K   ++EL I    
Sbjct: 63  VHSPYLRRPEKIRTVALLIITANRGLCGGFNSNLNRMAKARIAELKKKGVNVELHIVGKK 122

Query: 143 ----------------TELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVS 183
                           T +      Y +   LA+  ++   N   DA+ I  + ++S  S
Sbjct: 123 GISFFKFAGEKAEKTYTHIDDKS-GYKEAEELANLFMERFANESVDAVEIASTVYYSAAS 181

Query: 184 FLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLE 243
             P    VL  E     AE      +   YE     +   IL++L           A+LE
Sbjct: 182 QKPETTRVLPLEPPTAAAEGSV--QDDVVYE----PSPEAILESLLPLVVKTAFLKAILE 235

Query: 244 NACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
              SEQ AR  AM S++  A EM+  LT  YNR RQA IT E+ EI+ GA AL 
Sbjct: 236 ANASEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVGGADALN 289

Length = 289

>gnl|CDD|184046 PRK13422, PRK13422, F0F1 ATP synthase subunit gamma; Provisional

 Score =  103 bits (258), Expect = 7e-26
 Identities = 91/298 (30%), Positives = 143/298 (47%), Gaps = 55/298 (18%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSR-------GLWQPFTALLGDTPTV 100
           +R++++SVKN QKIT AM++VAASK+R   VK  N R        + +  TA   D P  
Sbjct: 7   IRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTAASIDYPNP 66

Query: 101 -----DAKKNVIVTISSDKGLCGGINSTAVK-----ISKSLH-KLNSDIELIITELQKNP 149
                D K+   +  S+D+GLCGG+N    K     I  ++  ++  D+ +I ++ +   
Sbjct: 67  YLFDRDVKRVGYIVTSTDRGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFF 126

Query: 150 LNYTQVSVLAD-----------------------DILKNVEFDALRIIYSKFHSVVSFLP 186
                V+++A                        D     E D L +  ++F S +   P
Sbjct: 127 AKLKDVNIVATAHYNDKDKEGSIRAIGGAVKVMLDKFTAGEIDRLYMSSNQFVSTIKQRP 186

Query: 187 TMATVL------SPELVE--REAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMF 238
            + T+L      S E ++  +E  + G    +   +IE      E+L  L        + 
Sbjct: 187 RLQTLLPIQDIFSAEEIKANKEKATKGHWDYIYERDIE------EVLNALCIRYIEAQVR 240

Query: 239 NAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
            A+LENA  EQ ARM AM +++ NA +++D+L L YN+ RQA IT EL EI SGA+A+
Sbjct: 241 GAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298

Length = 298

>gnl|CDD|211807 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, F1 subunit gamma

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 65/287 (22%), Positives = 122/287 (42%), Gaps = 40/287 (13%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQ--VKAENSR------GLWQPFT--ALLGDT 97
           +R +++S  ++Q + + MK +AA  +R  +  V+A +        GL        L   +
Sbjct: 1   LRRKIESAADLQSVVRTMKALAAVSIRQYEDAVRALDDYYRTVELGLAVCLRRIPLAALS 60

Query: 98  PTVDAKKN----VIVTISSDKGLCGGINST----AVK-------------ISKSLHKLNS 136
           P+   +K       +   SD+GL G  N      A +             + + +     
Sbjct: 61  PSGPNQKVSGHTGAIVFGSDQGLVGQFNEVILTFAAEELATLPGEATIWAVGERVASRLE 120

Query: 137 DIELIITELQKNPLNYTQVSVLADDILKNVE-------FDALRIIYSKFHSVVSFLPTMA 189
           D  L I EL + P +   ++ L  ++L  VE          L + +++  S  S+ PT  
Sbjct: 121 DSGLTIGELFRLPNSVGAITPLVSELLIEVEARREQGQLAELYLFFNRPSSGGSYEPTCQ 180

Query: 190 TVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQ 249
            +L  +   +   +  +       E+ G   +      + E+ F   +F A  E+  SE 
Sbjct: 181 RLLPLDETWQRQLATQQWPTKCLPELMGEPEE-TFSALIREYLFVS-LFRACAESLASEN 238

Query: 250 GARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
            +R++AM  + +N  E+LD L   ++R RQ++I  EL +++SG  AL
Sbjct: 239 ASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVVSGFEAL 285

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase. Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
COG0224	287	AtpG F0F1-type ATP synthase, gamma subunit [Energy	100.0
PRK13427	289	F0F1 ATP synthase subunit gamma; Provisional	100.0
PRK13425	291	F0F1 ATP synthase subunit gamma; Provisional	100.0
PRK14111	290	F0F1 ATP synthase subunit gamma; Provisional	100.0
PRK13423	288	F0F1 ATP synthase subunit gamma; Provisional	100.0
PRK13424	291	F0F1 ATP synthase subunit gamma; Provisional	100.0
PF00231	290	ATP-synt: ATP synthase This Pfam entry corresponds	100.0
PRK14110	291	F0F1 ATP synthase subunit gamma; Provisional	100.0
PRK13426	291	F0F1 ATP synthase subunit gamma; Provisional	100.0
PRK13422	298	F0F1 ATP synthase subunit gamma; Provisional	100.0
TIGR01146	287	ATPsyn_F1gamma ATP synthase, F1 gamma subunit. Thi	100.0
PRK05621	284	F0F1 ATP synthase subunit gamma; Validated	100.0
TIGR03323	285	alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit	100.0
KOG1531	304	consensus F0F1-type ATP synthase, gamma subunit [E	100.0

>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]

Probab=100.00  E-value=4.7e-74  Score=531.55  Aligned_cols=247  Identities=43%  Similarity=0.612  Sum_probs=217.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCC-------------CCCCceEEEEEcC
Q 040116           46 QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT-------------VDAKKNVIVTISS  112 (298)
Q Consensus        46 ~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~-------------~~~~k~~~IvitS  112 (298)
                      ++||+||+||++|+|||+||+|||++||+|+|+++.+.+||++++++++.++..             ...+++++|||||
T Consensus         1 keik~kI~Svk~t~KITkAM~mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~~~~~~~p~~~~~~e~kr~~~IviTS   80 (287)
T COG0224           1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASANLELDHPLLKPTREVKRVLYIVITS   80 (287)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcccccCCcccccccCCCceEEEEEec
Confidence            589999999999999999999999999999999999999999999999987532             1246779999999


Q ss_pred             CCccccccchHHHHHHHHhhhcc-c-----------------------CceeeeeeccCCCCChHhhHHHHHHHHh---c
Q 040116          113 DKGLCGGINSTAVKISKSLHKLN-S-----------------------DIELIITELQKNPLNYTQVSVLADDILK---N  165 (298)
Q Consensus       113 DrGLCG~fN~~vik~~~~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~---~  165 (298)
                      |||||||||+||+|.+...++.. +                       ++...+.++++. |+|+.+..|++.+++   .
T Consensus        81 DrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~-p~~~~~~~i~~~~~~~~~~  159 (287)
T COG0224          81 DRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDN-PSFEEAIQIADKILDAFLE  159 (287)
T ss_pred             CcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccC-CCHHHHHHHHHHHHHHHhC
Confidence            99999999999999999888531 1                       233446677665 899999999999887   5


Q ss_pred             CCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040116          166 VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENA  245 (298)
Q Consensus       166 ~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~  245 (298)
                      |++|+|+|+||+|+|.++|+|+++++||++..+...... +.. ...|+|||  |+++||+.|+|+|+.++||+|++||.
T Consensus       160 g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~~~~~~-~~~-~~~~efEp--d~e~il~~Ll~~Y~~~~iy~alles~  235 (287)
T COG0224         160 GEIDELYLVYNKFKNALSQEPTVQQLLPLDKIEDEAEEE-EPG-LWDYEFEP--DAEEILETLLPRYLESQLYGALLESK  235 (287)
T ss_pred             CCCceEEEEecccccceeeeeeeEEEecCCcccchhhhc-ccc-ccceeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999997543321110 101 25799999  99999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116          246 CSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE  297 (298)
Q Consensus       246 aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~  297 (298)
                      ||||+|||+||++|||||+++|++|++.|||+||++|||||+|||+|++||+
T Consensus       236 asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV~Ga~AL~  287 (287)
T COG0224         236 ASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEALE  287 (287)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhC
Confidence            9999999999999999999999999999999999999999999999999985

>PRK13427 F0F1 ATP synthase subunit gamma; Provisional

Probab=100.00  E-value=1.1e-71  Score=520.97  Aligned_cols=249  Identities=30%  Similarity=0.407  Sum_probs=215.4

Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCC-----------CC--CCceEEE
Q 040116           42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT-----------VD--AKKNVIV  108 (298)
Q Consensus        42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~-----------~~--~~k~~~I  108 (298)
                      |+++++||+||+||++|+|||+||||||++|+||+|+++++.+||++++.+++.++..           ..  .++.+||
T Consensus         1 Ma~lkeik~RI~sv~st~kIT~AMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~i   80 (289)
T PRK13427          1 MATPREIKKRINSVKNTRKITRTMEMVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEGVVHSPYLRRPEKIRTVALL   80 (289)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhCcCcccCCCcccCCccCceEEE
Confidence            8999999999999999999999999999999999999999999999999988876310           11  1345799


Q ss_pred             EEcCCCccccccchHHHHHHHHhhhc---c--c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh
Q 040116          109 TISSDKGLCGGINSTAVKISKSLHKL---N--S-------------------DIELIITELQKNPLNYTQVSVLADDILK  164 (298)
Q Consensus       109 vitSDrGLCG~fN~~vik~~~~~~~~---~--~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~  164 (298)
                      |||||||||||||++|+|.+.++++.   .  +                   .+...+.++. .+++|+.+..|++.+++
T Consensus        81 vitSDrGLcG~fN~~v~k~~~~~i~~~~~~~~~~~~~~vG~kg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~  159 (289)
T PRK13427         81 IITANRGLCGGFNSNLNRMAKARIAELKKKGVNVELHIVGKKGISFFKFAGEKAEKTYTHID-DKSGYKEAEELANLFME  159 (289)
T ss_pred             EEeCCCCccccccHHHHHHHHHHHHHHHhCCCcEEEEEEeHHHHHHHHHcCCCceeeecccC-CccCHHHHHHHHHHHHH
Confidence            99999999999999999999998742   1  1                   1222344553 46799999999998876


Q ss_pred             ---cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040116          165 ---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAV  241 (298)
Q Consensus       165 ---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~al  241 (298)
                         .|++|+|+|+||+|+|.++|+|.++++||++.......    ....+.|.|||  ++++||+.|+|.||++.||+|+
T Consensus       160 ~~~~~~~d~v~viy~~f~s~~~q~~~~~~llP~~~~~~~~~----~~~~~~~~~ep--~~~~vl~~l~~~yl~~~ly~al  233 (289)
T PRK13427        160 RFANESVDAVEIASTVYYSAASQKPETTRVLPLEPPTAAAE----GSVQDDVVYEP--SPEAILESLLPLVVKTAFLKAI  233 (289)
T ss_pred             HHHcCCCCEEEEEecccccceecceeeEEeeCCCccccccc----ccCCCceEecC--CHHHHHHHHHHHHHHHHHHHHH
Confidence               57999999999999999999999999999953211111    01123589999  9999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116          242 LENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE  297 (298)
Q Consensus       242 leS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~  297 (298)
                      +||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||||++|++
T Consensus       234 les~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIv~Gaeal~  289 (289)
T PRK13427        234 LEANASEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVGGADALN  289 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999984

>PRK13425 F0F1 ATP synthase subunit gamma; Provisional

Probab=100.00  E-value=5.3e-71  Score=516.71  Aligned_cols=248  Identities=33%  Similarity=0.480  Sum_probs=215.3

Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC-----C------CC--CCceEEE
Q 040116           42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP-----T------VD--AKKNVIV  108 (298)
Q Consensus        42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~-----~------~~--~~k~~~I  108 (298)
                      |+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++++.+++.++.     .      ..  .++.+||
T Consensus         1 M~~l~~ik~RI~sv~~t~kIT~AMkmVA~aklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i   80 (291)
T PRK13425          1 MPTLKDIRVRIKGVKSTQQVTKAMKMVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVDTSLNPLLSPRSEVNKVLVI   80 (291)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCccccccccCccEEEE
Confidence            899999999999999999999999999999999999999999999999998887641     0      11  2445799


Q ss_pred             EEcCCCccccccchHHHHHHHHhhhc-------c-c-------------------CceeeeeeccCCCCChHhhHHHHHH
Q 040116          109 TISSDKGLCGGINSTAVKISKSLHKL-------N-S-------------------DIELIITELQKNPLNYTQVSVLADD  161 (298)
Q Consensus       109 vitSDrGLCG~fN~~vik~~~~~~~~-------~-~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~  161 (298)
                      |||||||||||||++|+|.+.+.++.       . +                   ++...+.++. +.|+|+.+..|++.
T Consensus        81 vitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~~~~~i~~~~~~~~-~~~~~~~a~~i~~~  159 (291)
T PRK13425         81 LITSDRGLCGAFNTNIIKLAQKVIHEDYAALHAKGGVSMICAGTRGFDFFRKRGYNIVKGYPGVF-QNLDFSVAKEIAET  159 (291)
T ss_pred             EEeCCCcccccchHHHHHHHHHHHHHhhhhhccCCceEEEEeeHHHHHHHHHcCCCceeeecCcC-CCCCHHHHHHHHHH
Confidence            99999999999999999999988731       1 1                   1223344443 34689999999988


Q ss_pred             HHh---cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Q 040116          162 ILK---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMF  238 (298)
Q Consensus       162 l~~---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly  238 (298)
                      +++   .+++|+|+|+||+|+|.++|+|.++++||++.......      ....|.|||  ++++||++|+|.||++.||
T Consensus       160 ~~~~~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~~~~------~~~~~~~eP--~~~~il~~L~~~yl~~~ly  231 (291)
T PRK13425        160 ASGMYLRGEVDKVVVVYNEFKSVLAPNLKSEVLLPITPEKPGAE------GGSDYIYEP--SPAAIIDELVPKHLNTQVW  231 (291)
T ss_pred             HHHHHHcCCCCEEEEEeccceeceeeeEEEEEeeCCCccccccc------cCCCeEecC--CHHHHHHHHHHHHHHHHHH
Confidence            876   57999999999999999999999999999963221111      112489999  9999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhcC
Q 040116          239 NAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG  298 (298)
Q Consensus       239 ~alleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~~  298 (298)
                      +|++||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|++|
T Consensus       232 ~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EIv~Ga~al~~  291 (291)
T PRK13425        232 RMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVAGADALQG  291 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999986

>PRK14111 F0F1 ATP synthase subunit gamma; Provisional

Probab=100.00  E-value=7.4e-71  Score=515.57  Aligned_cols=247  Identities=32%  Similarity=0.452  Sum_probs=214.6

Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC-------C------C-C-CCceE
Q 040116           42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP-------T------V-D-AKKNV  106 (298)
Q Consensus        42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~-------~------~-~-~~k~~  106 (298)
                      |+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++++++++.++.       .      . . .++.+
T Consensus         1 Ma~lkeik~RI~Sv~s~~kITkAMkmvAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~   80 (290)
T PRK14111          1 MPSTREIRRRIRSVKNTAQITRAMEMVSASKMRRAQRNVLATRPYADRIRDVMGDLTARTVGAARVGPLLEKRPTVKRVA   80 (290)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccCccccCcccccCccccceE
Confidence            899999999999999999999999999999999999999999999999988887632       1      0 1 24457


Q ss_pred             EEEEcCCCccccccchHHHHHHHHhhhcc-----c-------------------CceeeeeeccCCCCChHhhHHHHHHH
Q 040116          107 IVTISSDKGLCGGINSTAVKISKSLHKLN-----S-------------------DIELIITELQKNPLNYTQVSVLADDI  162 (298)
Q Consensus       107 ~IvitSDrGLCG~fN~~vik~~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l  162 (298)
                      |||||||||||||||++|+|.+.+.++..     +                   .+...+.+.++ .|+|+++..|++.+
T Consensus        81 ~IvitSDrGLCG~fN~~l~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~l~~~~~~i~~~~~~~~~-~p~~~~~~~i~~~~  159 (290)
T PRK14111         81 LILVTPDRGLAGSLNANVLRRAIRFITDERSMGRTVDVIAIGRKGRDFMVRTGQALVAEFTRLGD-APKLEAILPVATSA  159 (290)
T ss_pred             EEEEeCCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEEehHHHHHHHHcCCCceeeeecCCC-CCCHHHHHHHHHHH
Confidence            99999999999999999999999987421     1                   12334445544 35999999999877


Q ss_pred             Hh---cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Q 040116          163 LK---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFN  239 (298)
Q Consensus       163 ~~---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~  239 (298)
                      ++   .+++|+|+|+||+|+|.++|+|.++++||++......      ...++|.|||  ++++||+.|+|.||++.||+
T Consensus       160 ~~~~~~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~~~~------~~~~~~~~ep--~~~~il~~L~~~yl~~~ly~  231 (290)
T PRK14111        160 INGFQSGKYDEVYVLYSEFINTLVQRPTIKQLLPIEPPEIST------TTVVDYTYEP--SPEEVLRALLPRFVEVQLYQ  231 (290)
T ss_pred             HHHHHcCCCCEEEEEecccccceeeeeeEEEecCCCcccccc------ccccceeecC--CHHHHHHHHHHHHHHHHHHH
Confidence            76   4799999999999999999999999999996322110      0223589999  99999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116          240 AVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE  297 (298)
Q Consensus       240 alleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~  297 (298)
                      |++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+|++|++
T Consensus       232 al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIVsGaeal~  289 (290)
T PRK14111        232 AVLESIASEHSARMVAMRNATDNAKELVRDLTLTYNKARQAAITKEVSEIASGAAALG  289 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999986

>PRK13423 F0F1 ATP synthase subunit gamma; Provisional

Probab=100.00  E-value=8.8e-71  Score=514.58  Aligned_cols=249  Identities=39%  Similarity=0.563  Sum_probs=214.9

Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC-----C------CC-CCceEEEE
Q 040116           42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP-----T------VD-AKKNVIVT  109 (298)
Q Consensus        42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~-----~------~~-~~k~~~Iv  109 (298)
                      |+++++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.++.     .      .. .++.+|||
T Consensus         1 M~~l~~ik~RI~Sv~~t~kItkAMkmvAaaklrka~~~~~~~~~y~~~i~~~~~~l~~~~~~~~~p~~~~~~~~~~~~Iv   80 (288)
T PRK13423          1 MASLKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAGEDAHPLLVPREVKKALLVV   80 (288)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCcccccCCCceEEEEE
Confidence            899999999999999999999999999999999999999999999999988887632     1      11 24457999


Q ss_pred             EcCCCccccccchHHHHHHHHhhhcc-----c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh-
Q 040116          110 ISSDKGLCGGINSTAVKISKSLHKLN-----S-------------------DIELIITELQKNPLNYTQVSVLADDILK-  164 (298)
Q Consensus       110 itSDrGLCG~fN~~vik~~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~-  164 (298)
                      |||||||||+||++|+|.+.+.++..     +                   .+...+.++. ..++|+.+..|++.+++ 
T Consensus        81 itSDrGLCG~fN~~i~k~~~~~i~~~~~~~~~~~l~~vG~k~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~i~~~l~~~  159 (288)
T PRK13423         81 VTSDRGLCGGFNSNLCKAAERFLKENKDEFEEISLTTVGRKGREFLKNRGLIIRKNYGGVV-ANLTYETAALLAQELIEG  159 (288)
T ss_pred             EeCCCCCcchhhHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHcCCCceeeecCcC-CCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999988421     1                   1122233343 34689999999988876 


Q ss_pred             --cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040116          165 --NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVL  242 (298)
Q Consensus       165 --~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~all  242 (298)
                        .+++|+|+|+||+|+|+++|+|.++++||++.......     ...+.|.|||  ++++||++|+|.||++.||+|++
T Consensus       160 ~~~~~~d~v~iiy~~f~n~~~q~~~~~~llP~~~~~~~~~-----~~~~~~~~ep--~~~~vl~~l~~~yl~~~ly~al~  232 (288)
T PRK13423        160 YLAGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPEAADD-----EYLPEYIYEP--SRDALLAELLPKHVEVQIYRALL  232 (288)
T ss_pred             HhcCCCCEEEEEecccccccccceeEEEecCCCccccccc-----ccccceeecC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence              47999999999999999999999999999963222100     1123589999  99999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhcC
Q 040116          243 ENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG  298 (298)
Q Consensus       243 eS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~~  298 (298)
                      ||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|+++
T Consensus       233 es~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIvsGaeal~~  288 (288)
T PRK13423        233 ESVASEHGARMTAMDSATKNATEMIGKLTLQYNRARQAAITTELMEIVSGAEALKG  288 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999975

>PRK13424 F0F1 ATP synthase subunit gamma; Provisional

Probab=100.00  E-value=1.4e-70  Score=513.89  Aligned_cols=251  Identities=34%  Similarity=0.518  Sum_probs=215.1

Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC-----C------CC--CCceEEE
Q 040116           42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP-----T------VD--AKKNVIV  108 (298)
Q Consensus        42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~-----~------~~--~~k~~~I  108 (298)
                      |+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++++.+++.++.     .      ..  .++.+||
T Consensus         1 M~~l~eik~RI~sv~~~~kIt~AMkmVAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~I   80 (291)
T PRK13424          1 MPSLKDVKVKIAGVKKTKQITKAMNMVASAKLRGAQQRIERFRPYAEKFYDMLGDLASRADSSAHPLLEVREEIKTCGIV   80 (291)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCcccCcccccccccCcEEEE
Confidence            899999999999999999999999999999999999999999999999988876632     0      11  1345799


Q ss_pred             EEcCCCccccccchHHHHHHHHhhhc----cc--------------------CceeeeeeccCCCCChHhhHHHHHHHHh
Q 040116          109 TISSDKGLCGGINSTAVKISKSLHKL----NS--------------------DIELIITELQKNPLNYTQVSVLADDILK  164 (298)
Q Consensus       109 vitSDrGLCG~fN~~vik~~~~~~~~----~~--------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~  164 (298)
                      |||||||||||||++|+|.+.++++.    ..                    .+...+.++. ..|+|+.+..|++.+++
T Consensus        81 vitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~vG~K~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~  159 (291)
T PRK13424         81 LITSDRGLCGSFNANLINAALKLAKQKTAEGKTVKFYCVGKKGRDAIRKTDFEIVTAYADQM-TSFDFQLANSIGLEVID  159 (291)
T ss_pred             EEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEeeHHHHHHHHHcCCCeeEeeccCC-CCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998842    11                    1222334443 34689999999987776


Q ss_pred             ---cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040116          165 ---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAV  241 (298)
Q Consensus       165 ---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~al  241 (298)
                         .+++|+|+|+||+|+|+++|+|.++++||++..+....   .+...+.|+|||  +++++|++|+|.||++.||+|+
T Consensus       160 ~~~~~~~d~v~viy~~f~s~~~~~~~~~~llP~~~~~~~~~---~~~~~~~~~~ep--~~~~il~~L~~~yl~~~ly~al  234 (291)
T PRK13424        160 GYLTGELDEVVLVYGEFVSMARQLPITLQILPIAPEEAEEE---EAGASSEYIYEP--SVEGLLAELLPRFIKVQIYRGL  234 (291)
T ss_pred             HHHcCCCCEEEEEeccccccccCceEEEEecCCCccccccc---ccccccCeeecC--CHHHHHHHHHHHHHHHHHHHHH
Confidence               57999999999999999999999999999963222110   111122589999  9999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhcC
Q 040116          242 LENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG  298 (298)
Q Consensus       242 leS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~~  298 (298)
                      +||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|+++
T Consensus       235 ~es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EIvsGa~al~~  291 (291)
T PRK13424        235 LDTSASEHAARMTAMDNATRNCDDMIGSLTLLYNKTRQASITRELMDIVGGAEALKG  291 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999864

>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=1.2e-70  Score=513.88  Aligned_cols=249  Identities=41%  Similarity=0.585  Sum_probs=210.6

Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCC-------------CCCceEEEE
Q 040116           43 ISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV-------------DAKKNVIVT  109 (298)
Q Consensus        43 asl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~-------------~~~k~~~Iv  109 (298)
                      ||+++||+||+||++|+|||+||||||++|+||+++++.+.+||++++..++.++...             +.++.+|||
T Consensus         1 A~lk~ik~RI~sv~~i~kIt~aMkmvA~sklrk~~~~~~~~~~y~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv   80 (290)
T PF00231_consen    1 ASLKEIKRRIKSVKSIQKITKAMKMVAASKLRKAQKALEAARPYAETIEEILADLLSSISDYQHPLLKKREEVKKVLLIV   80 (290)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHTTT--SSGS-----SCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccCcccccccccceEEEEE
Confidence            6899999999999999999999999999999999999999999999999999876211             347789999


Q ss_pred             EcCCCccccccchHHHHHHHHhhhccc------------------------CceeeeeeccCCCCChHhhHHHHHHHHh-
Q 040116          110 ISSDKGLCGGINSTAVKISKSLHKLNS------------------------DIELIITELQKNPLNYTQVSVLADDILK-  164 (298)
Q Consensus       110 itSDrGLCG~fN~~vik~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~-  164 (298)
                      ||||||||||||++|+|.+.++++..+                        ++...+.+++ .+++++.+..|++.+++ 
T Consensus        81 itSDrGLCG~fN~~v~k~~~~~~~~~~~~g~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~i~~~l~~~  159 (290)
T PF00231_consen   81 ITSDRGLCGGFNSNVIKAAESFIKEKDDQGKEVKLIVIGKKGRDFLKKRGYNIIASFNGIS-SDPTFEEASEIAEKLIDL  159 (290)
T ss_dssp             E--STSSSTTHHHHHHHHHHHHHCCSCTTTSEEEEEEESHHHHHHHHCSSTTEEEEEESBT-SS--HHHHHHHHHHHHHH
T ss_pred             EecCccccccccHHHHHHHHHHHhhccccCCceEEEEeCcchhhhhhhCCCcceeeeeccc-chhhHHHHHHHHHHHHhh
Confidence            999999999999999999999995421                        2233445554 57899999999999997 


Q ss_pred             --cCCcceEEEEeeeccccccccceeeeecCcchhh-hhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040116          165 --NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVE-REAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAV  241 (298)
Q Consensus       165 --~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~-~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~al  241 (298)
                        .|++|+|+|+||+|+|.++|+|.++++||+.... .....  ++.....|.|||  +++++|+.|+|.||++.||+|+
T Consensus       160 ~~~~~~d~v~viy~~~~~~~~~~~~~~~llP~~~~~~~~~~~--~~~~~~~~~~ep--~~~~il~~L~~~yl~~~l~~al  235 (290)
T PF00231_consen  160 YESGEIDEVYVIYNKFKSAVSQEPVVEQLLPLEKDIEQSSEE--KWPKKSPYEFEP--SPEEILDDLLPQYLFAQLYGAL  235 (290)
T ss_dssp             CCCCS-SEEEEEEEEECSTTEEEEEEEEESSS-----HHHHH--TTTTGGGCCCSS--TCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCeEEEEEEEeccceeeeEEeeehhhhhccchhhccc--cccCCCceEEcC--CHHHHHHHHHHHHHHHHHHHHH
Confidence              4799999999999999999999999999972211 11111  222456789999  9999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116          242 LENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL  296 (298)
Q Consensus       242 leS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl  296 (298)
                      +||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||||++||
T Consensus       236 ~eS~asE~~aR~~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGaeAl  290 (290)
T PF00231_consen  236 LESKASENAARMIAMENATDNAEELIDKLTLEYNRARQAEITQEIIEIVSGAEAL  290 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999996

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....

>PRK14110 F0F1 ATP synthase subunit gamma; Provisional

Probab=100.00  E-value=3.1e-70  Score=511.55  Aligned_cols=248  Identities=31%  Similarity=0.488  Sum_probs=213.8

Q ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC---------C--CC-CCceEEEEEc
Q 040116           44 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP---------T--VD-AKKNVIVTIS  111 (298)
Q Consensus        44 sl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~---------~--~~-~~k~~~Ivit  111 (298)
                      ++++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.++.         .  .. .++.++||||
T Consensus         5 slkeik~RI~sv~~~~kIT~AMkmVAasklrkaq~~~~~~~~y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ivit   84 (291)
T PRK14110          5 SPRDIKRKIQGIKNTRRITNAMKVVSAAKLRKAQELLYASRPYSEKLYELISDLAAHIDRESHPLLERREEKNVDLVIIT   84 (291)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCCccCcccccCccceEEEEEEe
Confidence            6899999999999999999999999999999999999999999999999886632         0  11 2445699999


Q ss_pred             CCCccccccchHHHHHHHHhhhc---c--c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh---
Q 040116          112 SDKGLCGGINSTAVKISKSLHKL---N--S-------------------DIELIITELQKNPLNYTQVSVLADDILK---  164 (298)
Q Consensus       112 SDrGLCG~fN~~vik~~~~~~~~---~--~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~---  164 (298)
                      ||||||||||++|+|.+.++++.   .  +                   .+...+.++++.|++|+.+..|++.+++   
T Consensus        85 SDrGLCG~fNs~vik~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~~~  164 (291)
T PRK14110         85 ADRGLAGAFNSNVIKTAERLIQEKQSEGVRVNLILIGRKGVQYFSKRGYNIIKSYEDVFRKEINFSVVKEVGGILASRYI  164 (291)
T ss_pred             CCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEehHHHHHHHHHcCCCceeeeccccCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999998842   1  1                   1223344555556799999999987775   


Q ss_pred             cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 040116          165 NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLEN  244 (298)
Q Consensus       165 ~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS  244 (298)
                      .+++|+|+|+||+|+|.++|+|.++++||++......    .+.....|+|||  ++++||++|+|.||++.||+|++||
T Consensus       165 ~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~~~~----~~~~~~~~~~ep--~~~~vl~~L~~~yl~~~ly~al~es  238 (291)
T PRK14110        165 EEETDAVYLINNEMITRATYKPKVRKFLPFEVEAQEK----KLDELSVYNIEV--SEEEFLDKLLQLYLNYQLYRALVES  238 (291)
T ss_pred             cCCCCEEEEEecccccceeeeEEEEEecCCCcccccc----ccCCCCCeEecC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999996321111    111223489999  9999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116          245 ACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE  297 (298)
Q Consensus       245 ~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~  297 (298)
                      ++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|++
T Consensus       239 ~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~Ei~EIv~Gaeal~  291 (291)
T PRK14110        239 NAAEHFARMVAMDNATRNAGELIRKWTLIFNKARQEAITTELIDIVNAAEAMK  291 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999984

>PRK13426 F0F1 ATP synthase subunit gamma; Provisional

Probab=100.00  E-value=4e-70  Score=510.84  Aligned_cols=249  Identities=31%  Similarity=0.458  Sum_probs=212.7

Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCC---------C---CCCceEEEE
Q 040116           42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT---------V---DAKKNVIVT  109 (298)
Q Consensus        42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~---------~---~~~k~~~Iv  109 (298)
                      |+++++||+||+||++|+|||+||||||++|+||+++++.+.+||++++.+++.++..         .   +.++.+|||
T Consensus         1 Ma~l~~ik~RI~sv~~t~kIt~AMkmVAasklrka~~~~~~~~~Y~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~Iv   80 (291)
T PRK13426          1 MASLKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADLDVESPFTVERPVKRVAIVV   80 (291)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccCCCCCcccccCCcceEEEEE
Confidence            8999999999999999999999999999999999999999999999999988876421         0   124456999


Q ss_pred             EcCCCccccccchHHHHHHHHhhhc------cc-------------------CceeeeeeccCCCCChHhhHHHHHHHHh
Q 040116          110 ISSDKGLCGGINSTAVKISKSLHKL------NS-------------------DIELIITELQKNPLNYTQVSVLADDILK  164 (298)
Q Consensus       110 itSDrGLCG~fN~~vik~~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~  164 (298)
                      ||||||||||||++|++.+.++++.      .+                   .+...+...++ .|+|+++..|++.+++
T Consensus        81 itSDrGLcG~fN~~v~~~~~~~~~~~~~~~~~~~~~~~vG~k~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~i~~~l~~  159 (291)
T PRK13426         81 FSSNTSLCGGFNANIIKLLLQTIGEYRTLGQDNILIYPVGKKIEEAVKKLGFKVQGDYQTLAD-KPSYEEAAALAMRLME  159 (291)
T ss_pred             EeCCCcccchhhHHHHHHHHHHHHHHhhcCCCceEEEEeeHHHHHHHHHcCCCceEeecccCC-CCCHHHHHHHHHHHHH
Confidence            9999999999999999999998742      11                   12223334433 4589999999998876


Q ss_pred             ---cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCC-CCccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 040116          165 ---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGEL-DSYEIEGGETKGEILQNLAEFQFSCVMFNA  240 (298)
Q Consensus       165 ---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~-~~~~~ep~~~~~~il~~L~~~yl~~~Ly~a  240 (298)
                         .+++|+|+|+||+|+|.++|+|+++++||++......... . ... +.|.|||  ++++||+.|+|.||++.||+|
T Consensus       160 ~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llPi~~~~~~~~~~-~-~~~~~~~~~Ep--~~e~il~~L~~~yl~~~ly~a  235 (291)
T PRK13426        160 LFLEGEIDKVELIYHHFKSMGVQVLTRETYLPIDLSQEKNAEH-A-GGVANDYIIEP--SADTVLNDLIPKLLSLKIYTA  235 (291)
T ss_pred             HHhcCCCCEEEEEecccccccccceeEEEecCCCccccccccc-c-cCCCCceEecC--CHHHHHHHHHHHHHHHHHHHH
Confidence               5799999999999999999999999999996322111100 0 011 2489999  999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhh
Q 040116          241 VLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASA  295 (298)
Q Consensus       241 lleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeA  295 (298)
                      ++||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||||++|
T Consensus       236 lles~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIvsGaea  290 (291)
T PRK13426        236 LLDSNASEHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGGSMA  290 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999999999999999999999999999999997

>PRK13422 F0F1 ATP synthase subunit gamma; Provisional

Probab=100.00  E-value=1.1e-69  Score=509.31  Aligned_cols=251  Identities=32%  Similarity=0.400  Sum_probs=210.3

Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCC---------CC--C-CCceEEEE
Q 040116           42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP---------TV--D-AKKNVIVT  109 (298)
Q Consensus        42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~---------~~--~-~~k~~~Iv  109 (298)
                      |+++++||+||+||++|+|||+||||||++|+||+|+++...+||++.+.+++.++.         ..  . .++.++||
T Consensus         1 Ma~l~eik~RI~Sv~~t~kIT~AMkmVAasKlrka~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Iv   80 (298)
T PRK13422          1 MSNAREIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTAASIDYPNPYLFDRDVKRVGYIV   80 (298)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCccCCcccccCCCceEEEEE
Confidence            899999999999999999999999999999999999999999999999988876632         11  1 23456999


Q ss_pred             EcCCCccccccchHHHHHHHHhhhc---c--c--------------------Cceee--eeeccCCCCChHhhHHHHHHH
Q 040116          110 ISSDKGLCGGINSTAVKISKSLHKL---N--S--------------------DIELI--ITELQKNPLNYTQVSVLADDI  162 (298)
Q Consensus       110 itSDrGLCG~fN~~vik~~~~~~~~---~--~--------------------~~~~~--~~~~~~~~~~~~~a~~i~~~l  162 (298)
                      ||||||||||||++|+|.+.+.++.   .  +                    ++...  +...+ .+++|+++..+++.+
T Consensus        81 itSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~K~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~  159 (298)
T PRK13422         81 TSTDRGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKD-KEGSIRAIGGAVKVM  159 (298)
T ss_pred             EeCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEEChhHHHHHHHhcCCCceeeeeeccCC-CCCCHHHHHHHHHHH
Confidence            9999999999999999999887742   1  1                    00111  11111 356899999999887


Q ss_pred             Hh---cCCcceEEEEeeeccccccccceeeeecCcchhh-hhh----hhCCCCCCCCCccccCCCCHHHHHHHHHHHHHH
Q 040116          163 LK---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVE-REA----ESGGKLGELDSYEIEGGETKGEILQNLAEFQFS  234 (298)
Q Consensus       163 ~~---~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~-~~~----~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~  234 (298)
                      ++   .+++|+|+|+||+|+|.++|+|.++++||++... ...    ... ......+|.|||  ++++||++|+|.||+
T Consensus       160 ~~~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llP~~~~~~~~~~~~~~~~-~~~~~~~~~~ep--~~~~il~~L~~~yl~  236 (298)
T PRK13422        160 LDKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFSAEEIKANKEK-ATKGHWDYIYER--DIEEVLNALCIRYIE  236 (298)
T ss_pred             HHHHHcCCCCEEEEEeccccCCcccceEEEEeeCCCcccchhhhcccccc-cccCCCCeEecC--CHHHHHHHHHHHHHH
Confidence            76   5799999999999999999999999999995211 010    000 000122489999  999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116          235 CVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL  296 (298)
Q Consensus       235 ~~Ly~alleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl  296 (298)
                      +.||+|++||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|.
T Consensus       237 ~~ly~al~eS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~Ei~EIvsGaeA~  298 (298)
T PRK13422        237 AQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV  298 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999984

>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit

Probab=100.00  E-value=5.2e-69  Score=502.39  Aligned_cols=248  Identities=44%  Similarity=0.596  Sum_probs=213.7

Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCC-----------C-CCceEEEE
Q 040116           42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV-----------D-AKKNVIVT  109 (298)
Q Consensus        42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~-----------~-~~k~~~Iv  109 (298)
                      |+++++||+||+||++|+|||+||||||++|+||+++++.+.++|++++.+++.++...           . .++.+|||
T Consensus         1 M~~l~eik~RI~sv~~~~kIt~aMkmvA~sklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iv   80 (287)
T TIGR01146         1 MATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLLNYDHPLLKSREVKKVGILV   80 (287)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCCCCCccccccccCeEEEEE
Confidence            89999999999999999999999999999999999999999999999999888774311           1 13456899


Q ss_pred             EcCCCccccccchHHHHHHHHhhhc----c-c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh-
Q 040116          110 ISSDKGLCGGINSTAVKISKSLHKL----N-S-------------------DIELIITELQKNPLNYTQVSVLADDILK-  164 (298)
Q Consensus       110 itSDrGLCG~fN~~vik~~~~~~~~----~-~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~-  164 (298)
                      |||||||||+||++|+|.+.+.++.    . +                   .+...+.+.+ .+++|+.+..|++.+++ 
T Consensus        81 itSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~vG~k~~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~i~~~i~~~  159 (287)
T TIGR01146        81 ITSDRGLCGGYNSNVLKRVRQRAKELKAAGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLS-DQPTFEEASGIADKLLDA  159 (287)
T ss_pred             EeCCCCccccccHHHHHHHHHHHHHHhccCCceEEEEeeHHHHHHHHHcCCCeeEeecccC-CCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999998842    1 1                   1122333343 35789999999998886 


Q ss_pred             --cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040116          165 --NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVL  242 (298)
Q Consensus       165 --~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~all  242 (298)
                        .+++|+|+|+||+|+|+++|+|.++++||++.......   . ...+.|.|||  ++++||++|+|.||++.||+|++
T Consensus       160 ~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~~~~---~-~~~~~~~~ep--~~~~vl~~l~~~yl~~~ly~a~~  233 (287)
T TIGR01146       160 FASGEFDEVYIVYNKFVSSISQEPTVKQLLPLSEQGPDEG---F-KFGQDYIFEP--DEEEILDDLLPRYLESQIYGALL  233 (287)
T ss_pred             HHcCCCCEEEEEecccccceeeeEEEEEeeCCCccccccc---c-cCCCCeEecC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence              47999999999999999999999999999963221110   0 0112589999  99999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116          243 ENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL  296 (298)
Q Consensus       243 eS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl  296 (298)
                      ||++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|+
T Consensus       234 es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIvsGaeal  287 (287)
T TIGR01146       234 ESAASEQAARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGASAL  287 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999986

This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.

>PRK05621 F0F1 ATP synthase subunit gamma; Validated

Probab=100.00  E-value=2.1e-68  Score=497.52  Aligned_cols=246  Identities=41%  Similarity=0.564  Sum_probs=214.2

Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCC--------C---CCCceEEEEE
Q 040116           42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT--------V---DAKKNVIVTI  110 (298)
Q Consensus        42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~--------~---~~~k~~~Ivi  110 (298)
                      |+++++||+||+||++|+|||+||||||++|++|+++++.+.++|.+++.+++.++..        .   +.++.+||||
T Consensus         1 M~~l~~lk~RI~sv~~i~kIt~aMkmvA~skl~k~~~~~~~~~~y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ivi   80 (284)
T PRK05621          1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASASEYDHPLLVEREVKRVGYIVV   80 (284)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCCCCcccccCCCceEEEEEE
Confidence            8999999999999999999999999999999999999999999999999988876421        0   1244579999


Q ss_pred             cCCCccccccchHHHHHHHHhhhcc-----c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh--
Q 040116          111 SSDKGLCGGINSTAVKISKSLHKLN-----S-------------------DIELIITELQKNPLNYTQVSVLADDILK--  164 (298)
Q Consensus       111 tSDrGLCG~fN~~vik~~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~--  164 (298)
                      ||||||||+||++|+|.+.+.++..     +                   ++...+.+.+ ..++|+.+..|++.+++  
T Consensus        81 tSd~GLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~k~~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~i~~~i~~~~  159 (284)
T PRK05621         81 TSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLG-DQPTFEEAIGIAKKLLDAY  159 (284)
T ss_pred             eCCCcccchhhHHHHHHHHHHHHHHHhcCCceEEEEehHHHHHHHHHcCCCceeeeeccC-CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999987421     1                   1223344443 34689999999988876  


Q ss_pred             -cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 040116          165 -NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLE  243 (298)
Q Consensus       165 -~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alle  243 (298)
                       .|++|+|+|+||+|+|+++|+|.++++||++.......      ..+.|.|||  +++++|++|+|.||++.||+|++|
T Consensus       160 ~~~~~~~i~viy~~f~~~~~~~~~~~~llP~~~~~~~~~------~~~~~~~ep--~~~~vl~~l~~~yl~~~l~~al~e  231 (284)
T PRK05621        160 DNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEEEEEE------TSWDYEYEP--DAEEILDALLPRYVESQIYQALLE  231 (284)
T ss_pred             HcCCCCEEEEEecccccceecceEEEEeCCCCccccccc------ccCCeeeCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence             57999999999999999999999999999974322110      123589999  999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116          244 NACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL  296 (298)
Q Consensus       244 S~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl  296 (298)
                      |++|||++||+||++|||||+|++++|+++|||+||++||+||+|||+|++|+
T Consensus       232 s~asE~aaR~~AM~~At~Na~e~i~~L~~~~Nr~RQ~~IT~El~EIvsGaeal  284 (284)
T PRK05621        232 NKASEQAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEAL  284 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999986

>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma

Probab=100.00  E-value=6e-68  Score=494.83  Aligned_cols=247  Identities=23%  Similarity=0.327  Sum_probs=203.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcC----CC-------CC---CCceEEEEEcCC
Q 040116           48 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT----PT-------VD---AKKNVIVTISSD  113 (298)
Q Consensus        48 Ik~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l----~~-------~~---~~k~~~IvitSD  113 (298)
                      ||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.++    +.       ..   .++.++||||||
T Consensus         1 ik~RI~Sv~~t~kITkAMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IvitSD   80 (285)
T TIGR03323         1 LRRKIESAADLQSVVRTMKALAAVSIRQYEDAVRALDDYYRTVELGLAVCLRRIPLAALSPSGPNQKVSGHTGAIVFGSD   80 (285)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhCCCcccccccccccCCCcEEEEEEECC
Confidence            68999999999999999999999999999999999999999999888763    21       11   244579999999


Q ss_pred             CccccccchHHHHHHHHhhhcc--c--------C----c---eeeeeeccCCCCChHhhHHHHHHHHh-------cCCcc
Q 040116          114 KGLCGGINSTAVKISKSLHKLN--S--------D----I---ELIITELQKNPLNYTQVSVLADDILK-------NVEFD  169 (298)
Q Consensus       114 rGLCG~fN~~vik~~~~~~~~~--~--------~----~---~~~~~~~~~~~~~~~~a~~i~~~l~~-------~~~~d  169 (298)
                      ||||||||++|+|.+.+.++..  +        +    +   ...+......+++++++..+++.+++       .|++|
T Consensus        81 rGLCG~fN~~l~k~~~~~~~~~~~~~~~~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~d  160 (285)
T TIGR03323        81 QGLVGQFNEVILTFAAEELARLPGEATIWAVGERVASRLEDSGLTIGELFRLPNSVGAITPLVSELLIEVEARREQGQLA  160 (285)
T ss_pred             CcCchHhHHHHHHHHHHHHHhccCCeEEEEECHHHHHHHHHcCCCceEeecCcCCHHHHHHHHHHHHHHHHhhhhcCCCc
Confidence            9999999999999999988531  1        0    0   00011111235578888888866654       57999


Q ss_pred             eEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040116          170 ALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQ  249 (298)
Q Consensus       170 ~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~  249 (298)
                      +|+|+||+|+|.++|+|.++++||++...........|.....|+|||  ++++||++|+|.||++.||+|++||++|||
T Consensus       161 ~v~iiY~~f~s~~~~~~~~~~llP~~~~~~~~~~~~~~~~~~~~~~ep--~~~~il~~L~~~yl~~~ly~alles~asE~  238 (285)
T TIGR03323       161 ELYLFFNRPSSGGSYEPTCQRLLPLDETWQRQLATQQWPTKCLPELMG--EPEETFSALIREYLFVSLFRACAESLASEN  238 (285)
T ss_pred             EEEEEecccccCcccceeeEEeeCCCccccccccccccccCCCceecC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999953111110000110112489999  999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116          250 GARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL  296 (298)
Q Consensus       250 aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl  296 (298)
                      ++||+||++|||||+|++++|+++|||+||++||+||+|||||++|+
T Consensus       239 aaRm~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGaeal  285 (285)
T TIGR03323       239 ASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVVSGFEAL  285 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999986

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.

>KOG1531 consensus F0F1-type ATP synthase, gamma subunit [Energy production and conversion]

Probab=100.00  E-value=4.8e-66  Score=467.06  Aligned_cols=267  Identities=44%  Similarity=0.608  Sum_probs=229.4

Q ss_pred             HHhcchhcccccCCCcccccccccccCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 040116            7 RREGRRFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGL   86 (298)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y   86 (298)
                      .|.+.++ .|.++-.+.++.         |.+|  |++|++|+.||+||+||||||++|||||++|+++||+.+.+.|+|
T Consensus         5 ~~~~~~~-~p~~~~~~~~~~---------q~~~--~Atlkei~~RlkSVKNiQKITksMKmVAaaK~~rAer~~~~ar~~   72 (304)
T KOG1531|consen    5 LRQATRL-LPSISASVSPAI---------QARG--FATLKEIRIRLKSVKNIQKITKSMKMVAAAKYARAERALKAARPY   72 (304)
T ss_pred             hhccccc-cchhhhhccchh---------hhcc--cchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            4555555 676554444322         3344  999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc----CCC---CCCCceEEEEEcCCCccccccchHHHHHHHHhhhcc---c--------------------
Q 040116           87 WQPFTALLGD----TPT---VDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLN---S--------------------  136 (298)
Q Consensus        87 ~~~l~~~l~~----l~~---~~~~k~~~IvitSDrGLCG~fN~~vik~~~~~~~~~---~--------------------  136 (298)
                      .++..+++..    .|.   .+.||.++|++|||||||||+|+.|.|.++..+...   .                    
T Consensus        73 ~~~~~~~~~~~d~~~p~~e~~~~kK~~lV~vtsDrGLCGgihssi~K~~r~~l~~~~~~~e~~vv~iGdK~ra~l~R~~~  152 (304)
T KOG1531|consen   73 GEGAVEFFKNIDIDVPLTEEGEVKKVLLVAVTSDRGLCGGIHSSIAKKARRELNDLKGGKEVRVVIIGDKIRAILLRLHP  152 (304)
T ss_pred             chHHHHHHhhccCCCCccccccccceEEEEEecCCccccchhHHHHHHHHHHHHhccCCCceEEEEEchhhhhheeecCc
Confidence            9999999984    442   245788999999999999999999999999988432   1                    


Q ss_pred             -CceeeeeeccCCCCChHhhHHHHHHHHhcC-CcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCC-Cc
Q 040116          137 -DIELIITELQKNPLNYTQVSVLADDILKNV-EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELD-SY  213 (298)
Q Consensus       137 -~~~~~~~~~~~~~~~~~~a~~i~~~l~~~~-~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~-~~  213 (298)
                       ++...+.++|..||+|+++..+++.+++.+ +||++.|+||+|++.++++|...++||++..+...       ... .+
T Consensus       153 ~~i~ls~~eig~~pptf~~asvia~~il~~~~e~d~~~ivyNkF~SvVs~e~~~~~il~l~~i~~s~-------~l~~~d  225 (304)
T KOG1531|consen  153 NSILLSINEIGRAPPTFEDASVIADEILLSGYEFDKGSIVYNKFKSVVSYETSEKPILPLETIEESE-------SLSCYD  225 (304)
T ss_pred             hhhhhhHhhcCCCCCcHHHHHHHHHHHHhhhccccceEEEeecchhheeeccccccccCHHHhcccc-------cccchh
Confidence             234456788888999999999999999875 99999999999999999999999999998654322       122 12


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhh
Q 040116          214 EIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGA  293 (298)
Q Consensus       214 ~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGa  293 (298)
                      .++     .+++..+.|+||..++|.++.||.+||+++||+||+||++||.||+++|++.|||.||+.||.||+|||+||
T Consensus       226 ~id-----dev~q~~~e~~la~~I~~am~Es~~SE~saRm~AMdnaSkNAgemi~kltl~yNRtRQA~IT~ELieIisGA  300 (304)
T KOG1531|consen  226 SID-----DEVLQSLMEYSLANQIYYAMKESATSELSARMNAMDNASKNAGEMIDKLTLTYNRTRQAVITNELIEIISGA  300 (304)
T ss_pred             hhh-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHhhhhhhhcccchHHHHHHHHhhh
Confidence            233     588999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhc
Q 040116          294 SALE  297 (298)
Q Consensus       294 eAl~  297 (298)
                      .||.
T Consensus       301 ~al~  304 (304)
T KOG1531|consen  301 SALT  304 (304)
T ss_pred             hhcC
Confidence            9973

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	298
2w6e_G	298	Low Resolution Structures Of Bovine Mitochondrial F		1e-41
2jdi_G	273	Ground State Structure Of F1-Atpase From Bovine Hea		1e-41
1cow_G	272	Bovine Mitochondrial F1-Atpase Complexed With Aurov		2e-41
1mab_G	270	Rat Liver F1-Atpase Length = 270		8e-39
2f43_G	273	Rat Liver F1-atpase Length = 273		1e-38
2xok_G	311	Refined Structure Of Yeast F1c10 Atpase Complex To		2e-28
2hld_G	278	Crystal Structure Of Yeast Mitochondrial F1-Atpase		3e-28
3oe7_G	278	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		1e-27
2qe7_G	286	Crystal Structure Of The F1-Atpase From The Thermoa		5e-26
3oaa_G	286	Structure Of The E.Coli F1-Atp Synthase Inhibited B		4e-24
1ohh_G	100	Bovine Mitochondrial F1-Atpase Complexed With The I		9e-17
1fs0_G	230	Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Le		3e-08

>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 298

Iteration: 1
 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/292 (37%), Positives = 171/292 (58%), Gaps = 49/292 (16%)
Query: 40  VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFT 91
           VR+++T + +  R+KS+KNIQKITK+MKMVAA+K       L+  +V    S  L++   
Sbjct: 22  VRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKAD 81
Query: 92  ALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKS--------------------- 130
                TP  D KK++I+ +SSD+GLCG I+S+  K  KS                     
Sbjct: 82  I---KTPE-DKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKI 137
Query: 131 ---LHKLNSDIELI-ITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFL 185
              LH+ +SD  L+   E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+ 
Sbjct: 138 RSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYK 197
Query: 186 PTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENA 245
                + S + +   AES     ++D+          ++L+N  E+  + +++ ++ E+ 
Sbjct: 198 TEEKPIFSLDTIS-SAESMSIYDDIDA----------DVLRNYQEYSLANIIYYSLKEST 246
Query: 246 CSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
            SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 247 TSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298

>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart Mitochondria (Bovine F1-Atpase Crystallised In The Absence Of Azide) Length = 273

Iteration: 1
 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/283 (37%), Positives = 164/283 (57%), Gaps = 48/283 (16%)
Query: 48  VRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTV 100
           +  R+KS+KNIQKITK+MKMVAA+K       L+  +V    S  L++        TP  
Sbjct: 6   ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADI---KTPE- 61
Query: 101 DAKKNVIVTISSDKGLCGGINSTAVKISKS------------------------LHKLNS 136
           D KK++I+ +SSD+GLCG I+S+  K  KS                        LH+ +S
Sbjct: 62  DKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHS 121
Query: 137 DIELI-ITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSP 194
           D  L+   E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S 
Sbjct: 122 DQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSL 181
Query: 195 ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMS 254
           + +   AES     ++D+          ++L+N  E+  + +++ ++ E+  SEQ ARM+
Sbjct: 182 DTIS-SAESMSIYDDIDA----------DVLRNYQEYSLANIIYYSLKESTTSEQSARMT 230
Query: 255 AMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
           AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 231 AMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 273

>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 272

Iteration: 1
 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 163/282 (57%), Gaps = 48/282 (17%)
Query: 48  VRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTV 100
           +  R+KS+KNIQKITK+MKMVAA+K       L+  +V    S  L++        TP  
Sbjct: 6   ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADI---KTPE- 61
Query: 101 DAKKNVIVTISSDKGLCGGINSTAVKISKS------------------------LHKLNS 136
           D KK++I+ +SSD+GLCG I+S+  K  KS                        LH+ +S
Sbjct: 62  DKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHS 121
Query: 137 DIELI-ITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSP 194
           D  L+   E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S 
Sbjct: 122 DQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSL 181
Query: 195 ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMS 254
           + +   AES     ++D+          ++L+N  E+  + +++ ++ E+  SEQ ARM+
Sbjct: 182 DTIS-SAESMSIYDDIDA----------DVLRNYQEYSLANIIYYSLKESTTSEQSARMT 230
Query: 255 AMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL
Sbjct: 231 AMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272

>pdb|1MAB|G Chain G, Rat Liver F1-Atpase Length = 270

Iteration: 1
 Score =  157 bits (396), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 104/283 (36%), Positives = 163/283 (57%), Gaps = 48/283 (16%)
Query: 48  VRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTV 100
           +  R+KS+KNIQKITK+MKMVAA+K       L+  +V    S  L++    + G  P  
Sbjct: 3   ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEK-AEIKG--PE- 58
Query: 101 DAKKNVIVTISSDKGLCGGINSTAVK------------------------ISKSLHKLNS 136
           D KK++I+ +SSD+GLCG I+S+  K                        I   L++ +S
Sbjct: 59  DKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHS 118
Query: 137 DIELI-ITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSP 194
           D  L+   ++ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S 
Sbjct: 119 DQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSF 178
Query: 195 ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMS 254
             V   AE+     ++D+          ++LQN  E+  + +++ ++ E+  SEQ ARM+
Sbjct: 179 STV-VAAENMSIYDDIDA----------DVLQNYQEYNLANIIYYSLKESTTSEQSARMT 227
Query: 255 AMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
           AMD++S+NA +M+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 228 AMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAALD 270

>pdb|2F43|G Chain G, Rat Liver F1-atpase Length = 273

Iteration: 1
 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/283 (36%), Positives = 163/283 (57%), Gaps = 48/283 (16%)
Query: 48  VRNRMKSVKNIQKITKAMKMVAASK-------LRAIQVKAENSRGLWQPFTALLGDTPTV 100
           +  R+KS+KNIQKITK+MKMVAA+K       L+  +V    S  L++    + G  P  
Sbjct: 6   ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEK-AEIKG--PE- 61
Query: 101 DAKKNVIVTISSDKGLCGGINSTAVK------------------------ISKSLHKLNS 136
           D KK++I+ +SSD+GLCG I+S+  K                        I   L++ +S
Sbjct: 62  DKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHS 121
Query: 137 DIELI-ITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSP 194
           D  L+   ++ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S 
Sbjct: 122 DQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSF 181
Query: 195 ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMS 254
             V   AE+     ++D+          ++LQN  E+  + +++ ++ E+  SEQ ARM+
Sbjct: 182 STV-VAAENMSIYDDIDA----------DVLQNYQEYNLANIIYYSLKESTTSEQSARMT 230
Query: 255 AMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 297
           AMD++S+NA +M+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 231 AMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAALD 273

>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 311

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 162/292 (55%), Gaps = 46/292 (15%)
Query: 40  VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL---G 95
           VR+ +T + V  R+KS+KNI+KITK MK+VA+++L   + KA+ S         L     
Sbjct: 30  VRTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAE-KAKISAKKMDEAEQLFYKNA 88
Query: 96  DTPTVD-------AKKNVIVTISSDKGLCGGINSTAVK-ISKSLH-KLNSDI-------- 138
           +T  +D       A K +IV I+SDKGLCG I+S   K + + L+ + N+DI        
Sbjct: 89  ETKNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIK 148
Query: 139 -----------ELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSF 184
                      +L I  + K+   + + +++AD +L   K   +  + I Y+   S +SF
Sbjct: 149 MQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSF 208
Query: 185 LPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLEN 244
            P+   + + + +E ++ S GK      +EI+   T   + ++L E+  +  M  A+ + 
Sbjct: 209 EPSEKPIFNAKTIE-QSPSFGK------FEID---TDANVPRDLFEYTLANQMLTAMAQG 258
Query: 245 ACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
             +E  AR +AMD++S+NAG+M++R ++ YNRTRQA IT EL++II+GAS+L
Sbjct: 259 YAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 310

>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 278

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 156/283 (55%), Gaps = 45/283 (15%)
Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL---GDTPTVD--- 101
           V  R+KS+KNI+KITK MK+VA+++L   + KA+ S         L     +T  +D   
Sbjct: 6   VEMRLKSIKNIEKITKTMKIVASTRLSKAE-KAKISAKKMDEAEQLFYKNAETKNLDVEA 64
Query: 102 ----AKKNVIVTISSDKGLCGGINSTAVK-ISKSLH-KLNSDI----------------- 138
               A K +IV I+SDKGLCG I+S   K + + L+ + N+DI                 
Sbjct: 65  TETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPN 124
Query: 139 --ELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLS 193
             +L I  + K+   + + +++AD +L   K   +  + I Y+   S +SF P+   + +
Sbjct: 125 NIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFN 184
Query: 194 PELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARM 253
            + +E ++ S GK      +EI+   T   + ++L E+  +  M  A+ +   +E  AR 
Sbjct: 185 AKTIE-QSPSFGK------FEID---TDANVPRDLFEYTLANQMLTAMAQGYAAEISARR 234
Query: 254 SAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           +AMD++S+NAG+M++R ++ YNRTRQA IT EL++II+GAS+L
Sbjct: 235 NAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 277

>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Gamma-I270t Length = 278

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 155/283 (54%), Gaps = 45/283 (15%)
Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL---GDTPTVD--- 101
           V  R+KS+KNI+KITK MK+VA+++L   + KA+ S         L     +T  +D   
Sbjct: 6   VEMRLKSIKNIEKITKTMKIVASTRLSKAE-KAKISAKKMDEAEQLFYKNAETKNLDVEA 64
Query: 102 ----AKKNVIVTISSDKGLCGGINSTAVK-ISKSLH-KLNSDI----------------- 138
               A K +IV I+SDKGLCG I+S   K + + L+ + N+DI                 
Sbjct: 65  TETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPN 124
Query: 139 --ELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLS 193
             +L I  + K+   + + +++AD +L   K   +  + I Y+   S +SF P+   + +
Sbjct: 125 NIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFN 184
Query: 194 PELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARM 253
            + +E ++ S GK      +EI+   T   + ++L E+  +  M  A+ +   +E  AR 
Sbjct: 185 AKTIE-QSPSFGK------FEID---TDANVPRDLFEYTLANQMLTAMAQGYAAEISARR 234
Query: 254 SAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           +AMD++S+NAG+M++R ++ YNRTRQA IT EL++ I+GAS+L
Sbjct: 235 NAMDNASKNAGDMINRYSILYNRTRQAVITNELVDTITGASSL 277

>pdb|2QE7|G Chain G, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 286

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 153/290 (52%), Gaps = 52/290 (17%)
Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT---------P 98
           ++ R++SVKN ++ITKAMKMVAA+KLR  Q  AEN+R        ++            P
Sbjct: 7   IKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAGTKDFSHP 66
Query: 99  TVDA---KKNVIVTISSDKGLCGGINSTAVK-ISKSLH-KLNSDIELIITELQKNPLNY- 152
            ++A   KK   + I+SD+GL G  N+  ++ +SK++  +  S  E +I  + +   ++ 
Sbjct: 67  MLEARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGRKGRDFF 126
Query: 153 --------TQVSVLAD--------DILKNV-------EFDALRIIYSKFHSVVSFLPTMA 189
                    +V+ ++D        DI ++         FD L I Y++F S +   P   
Sbjct: 127 KKRGYPVVEEVTGISDTPSLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPIVQRPVEK 186
Query: 190 TVL---SPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENAC 246
            +L   S E+++         G + +YE E       +L+ L       ++++A+L+   
Sbjct: 187 QLLPLTSEEVLD---------GPVSAYEYEPDSES--VLEVLLPKYAETLIYSALLDAKA 235
Query: 247 SEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           SE GARM+AM +++ NA EML+ LTL +NR RQA+IT E+ EI++GA+AL
Sbjct: 236 SEFGARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIVAGANAL 285

>pdb|3OAA|G Chain G, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 286

Iteration: 1
 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 141/290 (48%), Gaps = 50/290 (17%)
Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------TP 98
           +R+++ SV+N QKITKAM+MVAASK+R  Q +   SR   +    ++G           P
Sbjct: 6   IRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHP 65
Query: 99  TV---DAKKNVIVTISSDKGLCGGINSTAVKI---------------------SKSLHKL 134
            +   D K+   + +S+D+GLCGG+N    K                      SK +   
Sbjct: 66  YLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFF 125
Query: 135 NS---DIELIITELQKNP-----LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLP 186
           NS   ++   +T +  NP     +   +V + A D       D L I+ +KF + +S +P
Sbjct: 126 NSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYD---EGRLDKLYIVSNKFINTMSQVP 182
Query: 187 TMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENAC 246
           T++ +L     + +         L  YE +       +L+   E Q    ++  V+EN  
Sbjct: 183 TISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLA 236
Query: 247 SEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct: 237 SEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 286

>pdb|1OHH|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Inhibitor Protein If1 Length = 100

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 56/72 (77%)
Query: 225 LQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITT 284
           ++ +A  +    + ++V +   SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT 
Sbjct: 23  MKMVAAAKLCGAIHSSVAKQTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITK 82
Query: 285 ELIEIISGASAL 296
           ELIEIISGA+AL
Sbjct: 83  ELIEIISGAAAL 94

>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Length = 230

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 50/238 (21%)
Query: 60  KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------TPTV---DAKKNVI 107
           KITKAM+MVAASK+R  Q +   SR   +    ++G           P +   D K+   
Sbjct: 1   KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGY 60
Query: 108 VTISSDKGLCGGINSTAVKI---------------------SKSLHKLNS---DIELIIT 143
           + +S+D+GLCGG+N    K                      SK +   NS   ++   +T
Sbjct: 61  LVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVT 120
Query: 144 ELQKNP-----LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVE 198
            +  NP     +   +V + A D       D L I+ +KF + +S +PT++ +L     +
Sbjct: 121 GMGDNPSLSELIGPVKVMLQAYD---EGRLDKLYIVSNKFINTMSQVPTISQLLPLPASD 177
Query: 199 REAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAM 256
            +         L  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM
Sbjct: 178 DDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAM 229

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
2ck3_G	272	ATP synthase subunit gamma\, mitochondrial; hydrol	4e-88
2xok_G	311	ATP synthase subunit gamma, mitochondrial; hydrola	2e-87
3oee_G	278	ATP synthase subunit gamma; ATP phosphatase, F1F0	4e-87
3oaa_G	286	ATP synthase gamma chain; rossmann fold, hydrolase	1e-70
2qe7_G	286	ATP synthase subunit gamma; blockage of ATP hydrol	5e-70
1fs0_G	230	ATP synthase gamma subunit; coiled coil, epsilon,	1e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Length = 272

 Score =  263 bits (674), Expect = 4e-88
 Identities = 94/278 (33%), Positives = 150/278 (53%), Gaps = 40/278 (14%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKK 104
           +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK
Sbjct: 6   ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKK 65

Query: 105 NVIVTISSDKGLCGGINS----TAVKISKSLHKLNSDIELI------------------- 141
           ++I+ +SSD+GLCG I+S         + +L     ++++I                   
Sbjct: 66  HLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFL 125

Query: 142 --ITELQKNPLNYTQVSVLADDILK-NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVE 198
               E+ + P  +   SV+A ++L    EFD   II+++F SV+S+      + S + + 
Sbjct: 126 VTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTIS 185

Query: 199 REAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDS 258
                            +  +   ++L+N  E+  + +++ ++ E+  SEQ ARM+AMD+
Sbjct: 186 SAESM---------SIYDDIDA--DVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDN 234

Query: 259 SSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           +S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL
Sbjct: 235 ASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272

>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 311

 Score =  263 bits (674), Expect = 2e-87
 Identities = 82/319 (25%), Positives = 150/319 (47%), Gaps = 46/319 (14%)

Query: 12  RFATPLISPRPIAAIRSPFLSEEDAPLGVRSI-STQIVRNRMKSVKNIQKITKAMKMVAA 70
           R  +               +        VR+  + + V  R+KS+KNI+KITK MK+VA+
Sbjct: 4   RIVSNNA--TRSVMCHQAQVGILYKTNPVRTYATLKEVEMRLKSIKNIEKITKTMKIVAS 61

Query: 71  SKLRAIQVKAENSRGLWQPFTALLGD---------TPTVDAKKNVIVTISSDKGLCGGIN 121
           ++L   +    +++ + +       +              A K +IV I+SDKGLCG I+
Sbjct: 62  TRLSKAEKAKISAKKMDEAEQLFYKNAETKNLDVEATETGAPKELIVAITSDKGLCGSIH 121

Query: 122 STAVKISKSLHKLNSDIELI---------------------ITELQKNPLNYTQVSVLAD 160
           S   K  +       + +++                     I  + K+   + + +++AD
Sbjct: 122 SQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIAD 181

Query: 161 DILK---NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEG 217
            +L       +  + I Y+   S +SF P+   + + + +E+             +EI+ 
Sbjct: 182 KLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSF-------GKFEID- 233

Query: 218 GETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRT 277
             T   + ++L E+  +  M  A+ +   +E  AR +AMD++S+NAG+M++R ++ YNRT
Sbjct: 234 --TDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINRYSILYNRT 291

Query: 278 RQASITTELIEIISGASAL 296
           RQA IT EL++II+GAS+L
Sbjct: 292 RQAVITNELVDIITGASSL 310

>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 3oe7_G* Length = 278

 Score =  260 bits (668), Expect = 4e-87
 Identities = 79/282 (28%), Positives = 142/282 (50%), Gaps = 43/282 (15%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------TP 98
           V  R+KS+KNI+KITK MK+VA+++L   +    +++ + +       +           
Sbjct: 6   VEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLDVEAT 65

Query: 99  TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSDIELI----------------- 141
              A K +IV I+SDKGLCG I+S   K  +       + +++                 
Sbjct: 66  ETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNN 125

Query: 142 ----ITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVLSP 194
               I  + K+   + + +++AD +L       +  + I Y+   S +SF P+   + + 
Sbjct: 126 IKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNA 185

Query: 195 ELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMS 254
           + +E+             +EI+   T   + ++L E+  +  M  A+ +   +E  AR +
Sbjct: 186 KTIEQSPSF-------GKFEID---TDANVPRDLFEYTLANQMLTAMAQGYAAEISARRN 235

Query: 255 AMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           AMD++S+NAG+M++R ++ YNRTRQA IT EL++II+GAS+L
Sbjct: 236 AMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 277

>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Length = 286

 Score =  219 bits (560), Expect = 1e-70
 Identities = 84/296 (28%), Positives = 132/296 (44%), Gaps = 62/296 (20%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPF--------TALLGDTPT 99
           +R+++ SV+N QKITKAM+MVAASK+R  Q +   SR    P+          L      
Sbjct: 6   IRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASR----PYAETMRKVIGHLAHGNLE 61

Query: 100 VD--------AKKNVIVTISSDKGLCGGINS----TAVKISKSLHKLNSDIELI------ 141
                      K+   + +S+D+GLCGG+N       +   K+        +L       
Sbjct: 62  YKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKG 121

Query: 142 --------------ITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSF 184
                         +T +  NP + +++      +L+       D L I+ +KF + +S 
Sbjct: 122 VSFFNSVGGNVVAQVTGMGDNP-SLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQ 180

Query: 185 LPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNL----AEFQFSCVMFNA 240
           +PT++ +L     + +            Y  E       +L  L     E Q     +  
Sbjct: 181 VPTISQLLPLPASDDDDLKHKSW----DYLYEPDPK--ALLDTLLRRYVESQV----YQG 230

Query: 241 VLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct: 231 VVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 286

>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 286

 Score =  217 bits (555), Expect = 5e-70
 Identities = 92/296 (31%), Positives = 144/296 (48%), Gaps = 64/296 (21%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPF--------TALLGDTPT 99
           ++ R++SVKN ++ITKAMKMVAA+KLR  Q  AEN+R    P+        +++   T  
Sbjct: 7   IKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENAR----PYADKIKEVISSIAAGTKD 62

Query: 100 VD--------AKKNVIVTISSDKGLCGGINS----TAVKISKSLHKLNSDIELI------ 141
                      KK   + I+SD+GL G  N+       K  +  H+   +  +       
Sbjct: 63  FSHPMLEARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGRKG 122

Query: 142 --------------ITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSF 184
                         +T +   P + T++  +A   +    +  FD L I Y++F S +  
Sbjct: 123 RDFFKKRGYPVVEEVTGISDTP-SLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPIVQ 181

Query: 185 LPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNL----AEFQFSCVMFNA 240
            P    +L P L   E   G     + +YE E       +L+ L    AE      +++A
Sbjct: 182 RPVEKQLL-P-LTSEEVLDG----PVSAYEYEPDSE--SVLEVLLPKYAETL----IYSA 229

Query: 241 VLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           +L+   SE GARM+AM +++ NA EML+ LTL +NR RQA+IT E+ EI++GA+AL
Sbjct: 230 LLDAKASEFGARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIVAGANAL 285

>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Length = 230

 Score =  121 bits (307), Expect = 1e-33
 Identities = 59/244 (24%), Positives = 94/244 (38%), Gaps = 62/244 (25%)

Query: 60  KITKAMKMVAASKLRAIQVKAENSRGLWQPF--------TALLGDTPTVD--------AK 103
           KITKAM+MVAASK+R  Q +   SR    P+          L                 K
Sbjct: 1   KITKAMEMVAASKMRKSQDRMAASR----PYAETMRKVIGHLAHGNLEYKHPYLEDRDVK 56

Query: 104 KNVIVTISSDKGLCGGINS----TAVKISKSLHKLNSDIELI------------------ 141
           +   + +S+D+GLCGG+N       +   K+        +L                   
Sbjct: 57  RVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVV 116

Query: 142 --ITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVLSPEL 196
             +T +  NP + +++      +L+       D L I+ +KF + +S +PT++ +L    
Sbjct: 117 AQVTGMGDNP-SLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPA 175

Query: 197 VEREAESGGKLGELDSYEIEGGETKGEILQNL----AEFQFSCVMFNAVLENACSEQGAR 252
            + +            Y  E       +L  L     E Q    ++  V+EN  SEQ AR
Sbjct: 176 SDDDDLKHKSW----DYLYEPDPK--ALLDTLLRRYVESQ----VYQGVVENLASEQAAR 225

Query: 253 MSAM 256
           M AM
Sbjct: 226 MVAM 229

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 3e-07
 Identities = 39/314 (12%), Positives = 101/314 (32%), Gaps = 74/314 (23%)

Query: 12  RFATPLISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMK----- 66
              T    P   + +   ++ + D       +  +   +R++    +++    ++     
Sbjct: 97  PIKTEQRQP---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 67  ----M-------VAASKLRAIQVKAENSRGL-WQPFTALLGDTPTVDAKKNVIVTISSDK 114
               +       VA     + +V+ +    + W            ++  + ++  I  D 
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--DP 211

Query: 115 GLCGGINSTAVKISKSLHKLNSDI-ELIITELQKNPLNYTQVSVLADDILKNVE----FD 169
                 + ++  I   +H + +++  L+ ++  +N L      VL  ++ +N +    F+
Sbjct: 212 NWTSRSDHSS-NIKLRIHSIQAELRRLLKSKPYENCL-----LVL-LNV-QNAKAWNAFN 263

Query: 170 ALR---IIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQ 226
            L    ++ ++F  V  FL                 S      +         T  E+  
Sbjct: 264 -LSCKILLTTRFKQVTDFL-----------------SAATTTHISLDHHSMTLTPDEVKS 305

Query: 227 NLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRN---AGEMLDRLTLTYNRTRQASIT 283
            L ++          L+  C  Q      + ++ R      E +     T++  +  +  
Sbjct: 306 LLLKY----------LD--CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC- 352

Query: 284 TELIEIISGASALE 297
            +L  II   S+L 
Sbjct: 353 DKLTTIIE--SSLN 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
3oaa_G	286	ATP synthase gamma chain; rossmann fold, hydrolase	100.0
3oee_G	278	ATP synthase subunit gamma; ATP phosphatase, F1F0	100.0
2xok_G	311	ATP synthase subunit gamma, mitochondrial; hydrola	100.0
2ck3_G	272	ATP synthase subunit gamma\, mitochondrial; hydrol	100.0
2qe7_G	286	ATP synthase subunit gamma; blockage of ATP hydrol	100.0
1fs0_G	230	ATP synthase gamma subunit; coiled coil, epsilon,	100.0

>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1}

Probab=100.00  E-value=5.3e-75  Score=541.06  Aligned_cols=247  Identities=33%  Similarity=0.465  Sum_probs=215.3

Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcC---------CC---CCCCceEEEEE
Q 040116           43 ISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT---------PT---VDAKKNVIVTI  110 (298)
Q Consensus        43 asl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l---------~~---~~~~k~~~Ivi  110 (298)
                      +++++||+||+||++|+|||+||||||++|+||+|+++.+.|||++++.+++.++         |.   .+.++.++|||
T Consensus         1 a~lkeIk~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~Ivi   80 (286)
T 3oaa_G            1 AGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVV   80 (286)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCCSSCSCCCCSEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhCccccCcccccCCCCcEEEEEE
Confidence            5899999999999999999999999999999999999999999999999888754         11   12466799999


Q ss_pred             cCCCccccccchHHHHHHHHhhhc---cc---------------------CceeeeeeccCCCCChHhhHHHHHHHHh--
Q 040116          111 SSDKGLCGGINSTAVKISKSLHKL---NS---------------------DIELIITELQKNPLNYTQVSVLADDILK--  164 (298)
Q Consensus       111 tSDrGLCG~fN~~vik~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~--  164 (298)
                      |||||||||||+||+|.+.+.++.   ..                     ++...+.+++ +.|+|+++..+++.+++  
T Consensus        81 tSDrGLcG~fN~ni~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~-~~p~~~~~~~i~~~~~~~~  159 (286)
T 3oaa_G           81 STDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMG-DNPSLSELIGPVKVMLQAY  159 (286)
T ss_dssp             CCSCCCSTTHHHHHHHHHHHHHHHHHTTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCT-TCCCHHHHHHHHHHHHHHH
T ss_pred             eCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEeeHHHHHHHHHcCCCeEEeecccc-CCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999987642   11                     2233455564 35899999999998876  


Q ss_pred             -cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 040116          165 -NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLE  243 (298)
Q Consensus       165 -~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alle  243 (298)
                       .|++|+|+||||+|+|+++|+|.++++||++..+.....    ...+.|.|||  +++++|+.|+|.||++.||+|++|
T Consensus       160 ~~g~~d~v~lvyn~f~s~~~q~~~~~~lLPl~~~~~~~~~----~~~~~~~~Ep--~~~~vl~~Llp~yl~~~iy~alle  233 (286)
T 3oaa_G          160 DEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLK----HKSWDYLYEP--DPKALLDTLLRRYVESQVYQGVVE  233 (286)
T ss_dssp             HTTSCSEEEEEEEEEEETTEEEEEEEECSSCCCCHHHHSC----CCSCCCEESS--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCEEEEEEcccccccccceeEEEecCCCcccccccc----cCCCCceeCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence             589999999999999999999999999999865433211    1234689999  999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116          244 NACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL  296 (298)
Q Consensus       244 S~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl  296 (298)
                      |+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||+|++||
T Consensus       234 s~aSE~aARm~AM~~At~NA~eli~~Ltl~yNr~RQa~IT~El~EIv~Ga~Al  286 (286)
T 3oaa_G          234 NLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV  286 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999996

>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G*

Probab=100.00  E-value=4.9e-75  Score=539.17  Aligned_cols=245  Identities=33%  Similarity=0.532  Sum_probs=215.7

Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCC-----CC----CCceEEEEEcCC
Q 040116           43 ISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT-----VD----AKKNVIVTISSD  113 (298)
Q Consensus        43 asl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~-----~~----~~k~~~IvitSD  113 (298)
                      +++++||+||+||++|+|||+||||||++|+||+|+++.+.|||++++.+++.+...     .+    .++.+|||||||
T Consensus         1 a~lkeIk~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~IvitSD   80 (278)
T 3oee_G            1 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLDVEATETGAPKELIVAITSD   80 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC----------CEEEEEECCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcccccccccccccCCcEEEEEEeCC
Confidence            589999999999999999999999999999999999999999999999999987421     11    366799999999


Q ss_pred             CccccccchHHHHHHHHhhhccc---------------------CceeeeeeccCCCCChHhhHHHHHHHHh---cCCcc
Q 040116          114 KGLCGGINSTAVKISKSLHKLNS---------------------DIELIITELQKNPLNYTQVSVLADDILK---NVEFD  169 (298)
Q Consensus       114 rGLCG~fN~~vik~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~---~~~~d  169 (298)
                      ||||||||+||+|.+.+.++...                     .+...+.+++.++|+|+++..|++.+++   .|++|
T Consensus        81 rGLcG~fN~ni~k~~~~~~~~~~~~~l~~vG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~i~~~~~~g~~d  160 (278)
T 3oee_G           81 KGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYP  160 (278)
T ss_dssp             CCCSTTHHHHHHHHHHHHTTSCTTCEEEEESHHHHHHHHHHCTTTEEEEECSCSSSCCCHHHHHHHHHHHHHTTCGGGCS
T ss_pred             ccccchhhHHHHHHHHHHHHhcCCeEEEEEehHHHHHHHHcCCCceEEeeccCCCCCCCHHHHHHHHHHHHHHHhcCCCc
Confidence            99999999999999998874321                     1233455665567899999999999986   47999


Q ss_pred             eEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040116          170 ALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQ  249 (298)
Q Consensus       170 ~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~  249 (298)
                      +|+||||+|+|+++|+|+++++||++..+..       ...+.|+|||  + +++|+.|+|.||++.||+|++||+||||
T Consensus       161 ~v~ivyn~f~s~~~q~~~~~~llP~~~~~~~-------~~~~~y~~eP--~-~~vl~~Llp~yl~~~iy~alles~aSE~  230 (278)
T 3oee_G          161 KISIFYNDPVSSLSFEPSEKPIFNAKTIEQS-------PSFGKFEIDT--D-ANVPRDLFEYTLANQMLTAMAQGYAAEI  230 (278)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEECCHHHHHSC-------TTSTTSCCCS--S-SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecccccceeeeeEEEecCCCCccccc-------cCCCceecCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999753211       1245689999  8 9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116          250 GARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE  297 (298)
Q Consensus       250 aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~  297 (298)
                      +|||+||++|||||+||+++|+++|||+||++||+||+|||+|++||+
T Consensus       231 aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~El~EIv~Ga~Al~  278 (278)
T 3oee_G          231 SARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSLG  278 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999984

>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-74  Score=539.42  Aligned_cols=248  Identities=33%  Similarity=0.526  Sum_probs=215.3

Q ss_pred             cCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCCC---------CCceEEEEE
Q 040116           40 VRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVD---------AKKNVIVTI  110 (298)
Q Consensus        40 ~~Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~~---------~~k~~~Ivi  110 (298)
                      .+|+++++||+||+||++|+|||+||||||++|+||+|+++.+.|||++++++++.++....         .++.++|||
T Consensus        31 ~~MaslkeIk~RI~Svk~t~KITkAMkmVAasKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~p~~~k~~~~Ivi  110 (311)
T 2xok_G           31 RTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLDVEATETGAPKELIVAI  110 (311)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTHHHHHHHHHHHTTCCC-----------CEEEEEE
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccCCcccCceEEEEE
Confidence            44899999999999999999999999999999999999999999999999999999875321         356799999


Q ss_pred             cCCCccccccchHHHHHHHHhhhccc---------------------CceeeeeeccCCCCChHhhHHHHHHHHh---cC
Q 040116          111 SSDKGLCGGINSTAVKISKSLHKLNS---------------------DIELIITELQKNPLNYTQVSVLADDILK---NV  166 (298)
Q Consensus       111 tSDrGLCG~fN~~vik~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~---~~  166 (298)
                      |||||||||||++|+|.+.+.++...                     .+...+.++++.+|+|+++..|++.+++   .|
T Consensus       111 tSDrGLCG~fNsni~k~~~~~i~~~~g~~l~~VG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~i~~~~~~g  190 (311)
T 2xok_G          111 TSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAG  190 (311)
T ss_dssp             CCSCCSSTTHHHHHHHHHHHSSSSCTTCEEEEESHHHHHHHHTTSTTTEEEEEESCTTSCCCHHHHHHHHHHHHHTTCCT
T ss_pred             eCCCcccchhhHHHHHHHHHHHHhcCCCEEEEechHHHHHHHHhcCCCeEEEecccCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999998763210                     2334556666547899999999999997   47


Q ss_pred             CcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040116          167 EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENAC  246 (298)
Q Consensus       167 ~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~a  246 (298)
                      ++|+|+||||+|+|.++|+|+++++||++......       ..++|+|||   +++||+.|+|+||++.||+|++||+|
T Consensus       191 ~~d~v~lvYn~f~s~~~q~p~~~~lLPl~~~~~~~-------~~~~y~~EP---~e~vL~~Llp~yl~~~iy~allEs~A  260 (311)
T 2xok_G          191 TYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSP-------SFGKFEIDT---DANVPRDLFEYTLANQMLTAMAQGYA  260 (311)
T ss_dssp             TCSEEEEEEEECSSSSCCEEEEEEECCHHHHHHSG-------GGGGSCCCC---CSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEeeccccceeeeEEEEEccCCccccccc-------CCCCceeCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999986421111       123588997   57999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116          247 SEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE  297 (298)
Q Consensus       247 SE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~  297 (298)
                      |||+|||+||++|||||+||+++|+++|||+||++||+||+|||+|++||+
T Consensus       261 SE~aARm~AM~~AtdNA~eli~~Ltl~yNraRQa~IT~EL~EIVsGa~Al~  311 (311)
T 2xok_G          261 AEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSLG  311 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999984

>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...

Probab=100.00  E-value=3.4e-74  Score=531.90  Aligned_cols=243  Identities=39%  Similarity=0.560  Sum_probs=162.6

Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCC---CCCceEEEEEcCCCccccc
Q 040116           43 ISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGG  119 (298)
Q Consensus        43 asl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~---~~~k~~~IvitSDrGLCG~  119 (298)
                      +++++||+||+||++|+|||+||||||++|+||+|+++.+.|||++++.+++.++...   +.++.++||||||||||||
T Consensus         1 a~lkeIk~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~~~~~~~~~~~~~~~~~k~~~~ivitSDrGLcG~   80 (272)
T 2ck3_G            1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGA   80 (272)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------CCCCBCCSCCCSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHhccccCccccCceEEEEEeCCcccccc
Confidence            4799999999999999999999999999999999999999999999999999877421   2345689999999999999


Q ss_pred             cchHHHHHHHHhhhcc-----c--------------------CceeeeeeccCCCCChHhhHHHHHHHHhc-CCcceEEE
Q 040116          120 INSTAVKISKSLHKLN-----S--------------------DIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRI  173 (298)
Q Consensus       120 fN~~vik~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~~-~~~d~v~i  173 (298)
                      ||+||+|.+.+.++..     +                    .+...+.++++.+|+|+++..|++.+++. +++|+|+|
T Consensus        81 ~Nsni~k~~~~~~~~~~~~g~~~~l~~vG~K~~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~~~~~~~~~~d~v~i  160 (272)
T 2ck3_G           81 IHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSI  160 (272)
T ss_dssp             SHHHHC------------------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC----------CC
T ss_pred             ccHHHHHHHHHHHHHhhccCCceEEEEecHHHHHHHHhccCCceeeeecccCCCCCCHHHHHHHHHHHHHccCCCceEEE
Confidence            9999999998877321     0                    11222445544468999999999999986 79999999


Q ss_pred             EeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 040116          174 IYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARM  253 (298)
Q Consensus       174 iyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~aaRm  253 (298)
                      +||+|+|+++|+|++.++||++..+..         ...|.|||  ++++||+.|+|.|+.+.||+|++||.||||+|||
T Consensus       161 vyn~f~s~~~q~p~~~~lLPl~~~~~~---------~~~~~~Ep--~~~~vl~~llp~y~~~~iy~alles~aSE~aARm  229 (272)
T 2ck3_G          161 IFNRFRSVISYKTEEKPIFSLDTISSA---------ESMSIYDD--IDADVLRNYQEYSLANIIYYSLKESTTSEQSARM  229 (272)
T ss_dssp             CCCEECSSSCEECC-------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeccccccceeeeeeeccCCCccccc---------ccccccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999642211         12478999  9999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116          254 SAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL  296 (298)
Q Consensus       254 ~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl  296 (298)
                      +||++|||||+||+++|+++|||+||++||+||+|||||++||
T Consensus       230 ~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~El~EIv~Ga~Al  272 (272)
T 2ck3_G          230 TAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL  272 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999996

>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}

Probab=100.00  E-value=3.6e-74  Score=535.54  Aligned_cols=247  Identities=33%  Similarity=0.462  Sum_probs=174.5

Q ss_pred             CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCC------------CCCceEEEE
Q 040116           42 SISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV------------DAKKNVIVT  109 (298)
Q Consensus        42 Masl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~------------~~~k~~~Iv  109 (298)
                      |+++++||+||+||++|+|||+||||||++|+||+|+++...+||++.+++++.++...            +.++.+|||
T Consensus         1 Ma~lkeik~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~~~~~l~~l~~~~~~~~~~~~~~~~~k~~~~Iv   80 (286)
T 2qe7_G            1 MQGMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAGTKDFSHPMLEARPVKKTGYMV   80 (286)
T ss_dssp             --CCSSSSHHHHHHHHHHHHHHHHHHHHHHHTTSTTTSSSSSSSSTTCC--------------CCSSCSCCCCSSCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCccccccccCcEEEEE
Confidence            78999999999999999999999999999999999999999999999999998876321            125679999


Q ss_pred             EcCCCccccccchHHHHHHHHhhhcc-----c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh-
Q 040116          110 ISSDKGLCGGINSTAVKISKSLHKLN-----S-------------------DIELIITELQKNPLNYTQVSVLADDILK-  164 (298)
Q Consensus       110 itSDrGLCG~fN~~vik~~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~-  164 (298)
                      ||||||||||||++|+|.+.+.++..     +                   .+...+.++++ +|+|+++..|++.+++ 
T Consensus        81 itsDrGLcG~~N~ni~k~~~~~i~~~~~~~~~~~~~~iG~Kg~~~~~~~~~~i~~~~~~~~~-~p~~~~a~~i~~~i~~~  159 (286)
T 2qe7_G           81 ITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGRKGRDFFKKRGYPVVEEVTGISD-TPSLTEIQDIAQSAIGM  159 (286)
T ss_dssp             CCCTTCCCTHHHHHHHTGGGTTTTSSCTTSSCCCCCCCSHHHHHHHHSSSSCCSCCCSCCCS-SCCSTTTHHHHHHHHHH
T ss_pred             EeCCCCcccchhHHHHHHHHHHHHHhhccCCceEEEEechHHHHHHHHcCCCceeeeccCCC-CCCHHHHHHHHHHHHHH
Confidence            99999999999999999998877421     0                   12233445543 6789999999999987 


Q ss_pred             --cCCcceEEEEeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040116          165 --NVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVL  242 (298)
Q Consensus       165 --~~~~d~v~iiyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~all  242 (298)
                        .|++|+|+||||+|+|.++|+|.+.++||++..+....      ..++|.|||  +++++|+.|+|.||++.||+|++
T Consensus       160 ~~~~~~d~v~lvyn~f~s~~~q~~~~~~lLP~~~~~~~~~------~~~~y~~Ep--~~~~vl~~Ll~~yl~~~iy~al~  231 (286)
T 2qe7_G          160 FADETFDKLTIFYNEFVSPIVQRPVEKQLLPLTSEEVLDG------PVSAYEYEP--DSESVLEVLLPKYAETLIYSALL  231 (286)
T ss_dssp             HSSSSCSCCCCCCCCCSBTTBCCCCCCCCSSCCC-------------------------------CCCTTSSHHHHTTTT
T ss_pred             HhcCCcceEEEEEeecccceeeeeEEEEecCCCccccccc------cCCCceecC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence              57999999999999999999999999999964322101      123589999  99999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhhc
Q 040116          243 ENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE  297 (298)
Q Consensus       243 eS~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl~  297 (298)
                      ||.||||+|||+||++|||||+||+++|+++|||+||++||+||+|||||++||+
T Consensus       232 Es~asE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~El~EIv~Ga~Al~  286 (286)
T 2qe7_G          232 DAKASEFGARMTAMGNATDNATEMLETLTLQFNRARQAAITQEIAEIVAGANALR  286 (286)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999984

>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1

Probab=100.00  E-value=4.4e-50  Score=362.67  Aligned_cols=191  Identities=29%  Similarity=0.362  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCC------------CCCceEEEEEcCCCccccccchHHHHH
Q 040116           60 KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV------------DAKKNVIVTISSDKGLCGGINSTAVKI  127 (298)
Q Consensus        60 kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~------------~~~k~~~IvitSDrGLCG~fN~~vik~  127 (298)
                      |||+||||||+|||||||+++.+.|||++++++++.++...            +.++.++||||||||||||||+||+|.
T Consensus         1 KITkAMkmVAasKlrkaq~~~~~~rpY~~~~~~~l~~l~~~~~~~~~p~~~~r~~k~~~~IvitSDrGLcG~~Nsni~k~   80 (230)
T 1fs0_G            1 KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKK   80 (230)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCGGGSCCCCSEEEEEEECCSSSCSTTHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCcccCCccccccccCcEEEEEEeCCccccccccHHHHHH
Confidence            79999999999999999999999999999999998865211            125679999999999999999999999


Q ss_pred             HHHhhhcc-----c-------------------CceeeeeeccCCCCChHhhHHHHHHHHh---cCCcceEEEEeeeccc
Q 040116          128 SKSLHKLN-----S-------------------DIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHS  180 (298)
Q Consensus       128 ~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~---~~~~d~v~iiyn~f~s  180 (298)
                      +.+.++..     +                   .+...+.++++ +|+|+++..|++.+++   .|++|+|+||||+|+|
T Consensus        81 ~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~-~p~~~~a~~i~~~i~~~~~~g~~d~v~lvYn~f~s  159 (230)
T 1fs0_G           81 LLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGD-NPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFIN  159 (230)
T ss_dssp             HHHHHHHHHHTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTT-CCCSHHHHHHHHHHHHHHHTTSCSCEEEEEEEEEE
T ss_pred             HHHHHHHhhcCCCcEEEEEEeHHHHHHHHhCCCceEEeecCCCC-CCCHHHHHHHHHHHHHHHhcCCCcEEEEEEeeecc
Confidence            99887321     0                   23344556654 6899999999999986   5899999999999999


Q ss_pred             cccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040116          181 VVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMD  257 (298)
Q Consensus       181 ~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~aaRm~AM~  257 (298)
                      +++|+|++++|||++..+....    ....++|+|||  +++++|+.|+|+||++.||+|++||.||||+|||+||+
T Consensus       160 ~~~q~p~~~~lLP~~~~~~~~~----~~~~~~y~~Ep--~~~~vl~~Llp~yl~~~iy~alles~aSE~aARm~AM~  230 (230)
T 1fs0_G          160 TMSQVPTISQLLPLPASDDDDL----KHKSWDYLYEP--DPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMK  230 (230)
T ss_dssp             TTEEEEEEEEEESCC-----------CCCSCCCEEES--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cEEeeEEEEEecCCChhhcccc----cccCCCeEecC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999964222110    00123689999  99999999999999999999999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	298
d2jdig1	272	c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma	8e-54
d1fs0g_	230	c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subu	3e-28

>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 272

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  174 bits (442), Expect = 8e-54
 Identities = 95/278 (34%), Positives = 148/278 (53%), Gaps = 40/278 (14%)

Query: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---TPTVDAKK 104
           +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK
Sbjct: 6   ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKK 65

Query: 105 NVIVTISSDKGLCGGINSTAVKISKSL-------------------------HKLNSDIE 139
           ++I+ +SSD+GLCG I+S+  K  KS                             +    
Sbjct: 66  HLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFL 125

Query: 140 LIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVE 198
           +   E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S + + 
Sbjct: 126 VTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTIS 185

Query: 199 REAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDS 258
                               +   ++L+N  E+  + +++ ++ E+  SEQ ARM+AMD+
Sbjct: 186 S-----------AESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDN 234

Query: 259 SSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 296
           +S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL
Sbjct: 235 ASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 272

>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Escherichia coli [TaxId: 562]

 Score =  106 bits (265), Expect = 3e-28
 Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 44/235 (18%)

Query: 60  KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD------------TPTVDAKKNVI 107
           KITKAM+MVAASK+R  Q +   SR   +    ++G                 D K+   
Sbjct: 1   KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGY 60

Query: 108 VTISSDKGLCGGINSTAVKISKSLHKLN-----------------------SDIELIITE 144
           + +S+D+GLCGG+N    K   +  K                             +    
Sbjct: 61  LVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVT 120

Query: 145 LQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREA 201
              +  + +++      +L        D L I+ +KF + +S +PT++ +L     + + 
Sbjct: 121 GMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDD 180

Query: 202 ESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAM 256
                  +   Y  E       +L  L        ++  V+EN  SEQ ARM AM
Sbjct: 181 LK----HKSWDYLYEPDPK--ALLDTLLRRYVESQVYQGVVENLASEQAARMVAM 229

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d2jdig1	272	ATP synthase (F1-ATPase), gamma subunit {Cow (Bos	100.0
d1fs0g_	230	ATP synthase (F1-ATPase), gamma subunit {Escherich	100.0

>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4e-71  Score=506.46  Aligned_cols=243  Identities=39%  Similarity=0.560  Sum_probs=160.8

Q ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCCC---CCCceEEEEEcCCCccccc
Q 040116           43 ISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGG  119 (298)
Q Consensus        43 asl~eIk~RI~Sv~~~~kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~~---~~~k~~~IvitSDrGLCG~  119 (298)
                      |||+|||+||+||++|+|||+||||||+||+||+|+++.+.|||+.....++.+....   +.++.++||||||||||||
T Consensus         1 A~Lkeik~RI~Sv~~t~kITkAMkmVAasKlrkaq~~~~~~r~Y~~~~~~~~~~~~~~~~~~~~~~l~IvitSDrGLcG~   80 (272)
T d2jdig1           1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGA   80 (272)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCCCBCCSCCCSTT
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHhhccccchhccccccceeEEEecCCCCCCC
Confidence            6899999999999999999999999999999999999999999998877777664322   3466789999999999999


Q ss_pred             cchHHHHHHHHhhhcc---c----------------------CceeeeeeccCCCCChHhhHHHHHHHHhc-CCcceEEE
Q 040116          120 INSTAVKISKSLHKLN---S----------------------DIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRI  173 (298)
Q Consensus       120 fN~~vik~~~~~~~~~---~----------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~~-~~~d~v~i  173 (298)
                      ||++|+|++.+.+...   .                      .+...+...++.++++..+..+...+... +++|+|+|
T Consensus        81 fN~~iik~~~~~i~~~~~~~~~~~l~~~G~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~d~v~i  160 (272)
T d2jdig1          81 IHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSI  160 (272)
T ss_dssp             HHHHHC------------------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC----------CC
T ss_pred             ccccHHHHHHHHHHHhhccCCceEEEecccchhhhhhhcccceeeeeeeecCCCCchhHHHHHHHHHHHHhhhhcceeEE
Confidence            9999999998877431   0                      01112333444567788887777666553 58999999


Q ss_pred             EeeeccccccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 040116          174 IYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARM  253 (298)
Q Consensus       174 iyn~f~s~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~aaRm  253 (298)
                      +||+|+|.++|+|.+++++|++..+.         ....+.|+|  +++++|+.|+|.||++.||+|++||+||||+|||
T Consensus       161 ~y~~f~~~~~q~p~~~~l~p~~~~~~---------~~~~~~~~~--~~~~vl~~l~~~yl~~~ly~a~~es~aSE~aaRm  229 (272)
T d2jdig1         161 IFNRFRSVISYKTEEKPIFSLDTISS---------AESMSIYDD--IDADVLRNYQEYSLANIIYYSLKESTTSEQSARM  229 (272)
T ss_dssp             CCCEECSSSCEECC-------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Eeecccccccccceeecccccccccc---------cchhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875332         133467899  8999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhhhhh
Q 040116          254 SAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL  296 (298)
Q Consensus       254 ~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIvsGaeAl  296 (298)
                      +||++|||||+|++++|+++|||+||++||+||+|||+|+|||
T Consensus       230 ~AM~~At~Na~eli~~L~~~yNr~RQ~~IT~El~EIv~GaeAl  272 (272)
T d2jdig1         230 TAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL  272 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999996

>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-49  Score=355.14  Aligned_cols=191  Identities=29%  Similarity=0.371  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhcCCC------------CCCCceEEEEEcCCCccccccchHHHHH
Q 040116           60 KITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT------------VDAKKNVIVTISSDKGLCGGINSTAVKI  127 (298)
Q Consensus        60 kIT~AMkmVAaaKlrka~~~l~~~r~Y~~~l~~~l~~l~~------------~~~~k~~~IvitSDrGLCG~fN~~vik~  127 (298)
                      |||+||||||+||+||+|+++.+.|||++.+.+++.++..            .+.++.++||||||||||||||++|+|+
T Consensus         1 KITkAMkmVAasKl~kaq~~~~~~r~Y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ivitSDrGLCG~~Ns~i~k~   80 (230)
T d1fs0g_           1 KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKK   80 (230)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCGGGSCCCCSEEEEEEECCSSSCSTTHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcCcccccccccCCCCCeEEEEEEecCcccccccchhHHHH
Confidence            7999999999999999999999999999999998876421            1235679999999999999999999999


Q ss_pred             HHHhhhcc---c---------------------CceeeeeeccCCCCChHhhHHHHHHHHh---cCCcceEEEEeeeccc
Q 040116          128 SKSLHKLN---S---------------------DIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHS  180 (298)
Q Consensus       128 ~~~~~~~~---~---------------------~~~~~~~~~~~~~~~~~~a~~i~~~l~~---~~~~d~v~iiyn~f~s  180 (298)
                      +.+.++..   +                     .+...+.... ..++++++..+++.+++   .|++|+|+||||+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vGkk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~d~v~iiYn~f~s  159 (230)
T d1fs0g_          81 LLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMG-DNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFIN  159 (230)
T ss_dssp             HHHHHHHHHHTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCT-TCCCSHHHHHHHHHHHHHHHTTSCSCEEEEEEEEEE
T ss_pred             HHHHHhhhhhcCCceeEEEeeeeehhHHHhcCCceeeecccCc-cCccHHHHHHHHHHHHHHHhcCCceEEEEEeccccc
Confidence            99887531   1                     1222333443 45789999999998886   5799999999999999


Q ss_pred             cccccceeeeecCcchhhhhhhhCCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040116          181 VVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMD  257 (298)
Q Consensus       181 ~~~~~~~~~~lLP~~~~~~~~~~~~~~~~~~~~~~ep~~~~~~il~~L~~~yl~~~Ly~alleS~aSE~aaRm~AM~  257 (298)
                      +++|+|+++++||++..+.....    ....+|.|||  +++++|++|+|+|+++.||+|++||.||||+|||+||+
T Consensus       160 ~~~q~p~~~~llP~~~~~~~~~~----~~~~~~~fEP--~~~~vl~~l~~~yl~~~ly~allEs~aSE~aARm~AM~  230 (230)
T d1fs0g_         160 TMSQVPTISQLLPLPASDDDDLK----HKSWDYLYEP--DPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMK  230 (230)
T ss_dssp             TTEEEEEEEEEESCC-------C----CCSCCCEEES--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccceeeeeeccccccccccc----cCCCCceeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999764432211    1345689999  99999999999999999999999999999999999995