Citrus Sinensis ID: 040162

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
Protein Sequence
MAGKQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIRKQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ
Secondary Structure (PSIPRED)
ccccccccccHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
magkqvagdglpanlagmsKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLgmvkppqvipsvqppalqhpqqsapqlqqpnfqatqassgqvglqdqtsasqTQTSIRKqhqnqpampissaslpaanlqsqpmhshalqvpqqlkgrpnaplttmslpqpsqhssmppishhsasqppslhqpqmpaassqlqpplqstgpphmplqpplpqqprpasmqsfhqyaphvgstvgfqhpaaqqrssqpmyhsgpnppasigpsfqqgqppvpsqplpqsvyqaggsrlgsdfnnqignsmqidrgswmsgppenpaftqlsgpppavsgqmgpgnqpprpsslspEMEQALLQQVMSlspeqisllppeqrNQVLQLQQILRQ
Flexible Loop (DISEMBL)
magkqvagdglpanlaGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIRKQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ
Low Complexity Region (SEG)
MAGKQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPSVqppalqhpqqsapqlqqpNFQATQASSGQVGLQDqtsasqtqtsIRKQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQSTGpphmplqpplpqqprpASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGpsfqqgqppvpsqplpqsvyqAGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ
Disordered region (IsUnstruct)
**********************LYEIMT************ARQILIQNPLLTKALFQAQIMLGMVK*****************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
***************AGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQI***********************************************************************************************************************************************************************************************************************************************************************************************************************************N*VLQLQQILR*
Disordered Region (DISEMBL)
********DGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPSVQP*****************************************************PISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMS*******************************************GPPHMPLQP***********QSFHQYAPHVGSTVGFQ****************PNPPASIG****************QSVYQAGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPP*********************MEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ
Disordered Region (DISPRO)
********DGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPP**********************************************************************************************************************************************************************************************************************************************************************************************LSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGKQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIRKQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	395	2.2.26 [Sep-21-2011]
Q8HXM1	572	Cleavage stimulation fact	yes	no	0.118	0.082	0.446	5e-05
Q5RDA3	577	Cleavage stimulation fact	yes	no	0.118	0.081	0.446	5e-05
P33240	577	Cleavage stimulation fact	yes	no	0.118	0.081	0.446	5e-05
Q8BIQ5	580	Cleavage stimulation fact	yes	no	0.113	0.077	0.446	5e-05
Q8C7E9	632	Cleavage stimulation fact	no	no	0.096	0.060	0.425	0.0001

>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 21  NQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKP 67
            Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V P
Sbjct: 138 EQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDP 184

One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs. This subunit is directly involved in the binding to pre-mRNAs.
Bos taurus (taxid: 9913)

>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 21  NQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKP 67
            Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V P
Sbjct: 138 EQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDP 184

One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs. This subunit is directly involved in the binding to pre-mRNAs.

Pongo abelii (taxid: 9601)

>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 21  NQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKP 67
            Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V P
Sbjct: 138 EQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDP 184

One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs. This subunit is directly involved in the binding to pre-mRNAs.

Homo sapiens (taxid: 9606)

>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 21  NQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKP 67
            Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V P
Sbjct: 138 EQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDP 184

One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs. This subunit is directly involved in the binding to pre-mRNAs.

Mus musculus (taxid: 10090)

>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 34/47 (72%)

Query: 21  NQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKP 67
            Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ ++ P
Sbjct: 138 EQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDP 184

May play a significant role in AAUAAA-independent mRNA polyadenylation in germ cells. Directly involved in the binding to pre-mRNAs.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
224121298	396	predicted protein [Populus trichocarpa]	0.997	0.994	0.637	1e-118
449503141	399	PREDICTED: uncharacterized LOC101206596	0.994	0.984	0.605	1e-101
356524138	392	PREDICTED: uncharacterized protein LOC10	0.977	0.984	0.613	7e-99
255634660	387	unknown [Glycine max]	0.967	0.987	0.585	2e-97
356513105	379	PREDICTED: uncharacterized protein LOC10	0.951	0.992	0.595	3e-97
357521139	395	Proline-rich protein [Medicago truncatul	0.989	0.989	0.598	3e-95
255582753	331	proline-rich protein, putative [Ricinus	0.832	0.993	0.623	1e-78
22330606	388	hydroxyproline-rich glycoprotein-like pr	0.954	0.971	0.536	7e-75
351722127	338	proline-rich protein precursor [Glycine	0.843	0.985	0.547	7e-72
297842135	388	hypothetical protein ARALYDRAFT_476521 [	0.954	0.971	0.532	3e-69

>gi|224121298|ref|XP_002318548.1| predicted protein [Populus trichocarpa] gi|222859221|gb|EEE96768.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/397 (63%), Positives = 301/397 (75%), Gaps = 3/397 (0%)

Query: 1   MAGKQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQI 60
           M GK +AG+GLPANLAGM+KNQLY+IM QMK+LIEQN+QQA++ILIQNPLLTKALFQAQI
Sbjct: 1   MTGKPIAGEGLPANLAGMTKNQLYDIMFQMKTLIEQNKQQAKEILIQNPLLTKALFQAQI 60

Query: 61  MLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIR 120
           MLGMV+PPQ IP++QP A Q PQ SA   +Q N QA Q   GQ  LQDQTS SQ+Q  +R
Sbjct: 61  MLGMVQPPQAIPNIQPAASQQPQLSAQPSRQSNIQAAQTLPGQGALQDQTSVSQSQPPMR 120

Query: 121 KQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMP 180
           KQHQ+QPAM IS+   P  NLQSQP+ SH L +PQQ KG  N  +T MS+ QPSQ  ++P
Sbjct: 121 KQHQSQPAMSISAPPGPPVNLQSQPLPSHPLHMPQQPKGHVNPQVTPMSVTQPSQLPNLP 180

Query: 181 PISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSF-HQYA 239
           P S HS SQP  +HQ QM + SSQL  PLQ TG PH+PLQ P P QPR AS+ SF HQY 
Sbjct: 181 PASSHSVSQPLPIHQTQMSSVSSQLLLPLQKTGIPHLPLQQPFPSQPRTASVPSFHHQYG 240

Query: 240 PHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSR 299
             +G  +G+QH  A    SQPM+HS   P +S+GPSF QGQPP+  Q  PQS YQAGGS 
Sbjct: 241 QQMGPNMGYQHAGAPHHPSQPMFHSSNKPQSSMGPSFPQGQPPLSIQQPPQS-YQAGGSH 299

Query: 300 LGSDFNNQIGNSMQIDRG-SWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPE 358
           LG+++N+Q+  SMQ+DRG SWMSGPP++   TQL+GPP    GQM  GNQP R + +S E
Sbjct: 300 LGAEYNSQVPTSMQVDRGSSWMSGPPDSSTMTQLAGPPQFNPGQMAQGNQPSRTAPMSSE 359

Query: 359 MEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
           ME+ALLQQVMSL+PEQI+LLPPEQRNQVLQLQQ+LRQ
Sbjct: 360 MEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503141|ref|XP_004161854.1| PREDICTED: uncharacterized LOC101206596 [Cucumis sativus]

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 243/401 (60%), Positives = 286/401 (71%), Gaps = 8/401 (1%)

Query: 1   MAGKQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQI 60
           MAGKQV+G GLP ++AGMSKNQLY+IM+QMK+LIEQN+QQA+QILIQNPLLTKALFQAQI
Sbjct: 1   MAGKQVSGAGLPESIAGMSKNQLYDIMSQMKTLIEQNQQQAKQILIQNPLLTKALFQAQI 60

Query: 61  MLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIR 120
           MLGMV+PPQV+PS+QP A QH Q S    QQ N Q TQ S+ Q+ LQ+QTSA     S R
Sbjct: 61  MLGMVRPPQVVPSIQPSASQHSQPSTQATQQSNLQPTQTSAPQISLQEQTSAPPLAPS-R 119

Query: 121 KQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMP 180
           KQ+QNQP+MPISS +LP AN+Q +P     LQ PQ  KG        +S+PQPSQ  S+ 
Sbjct: 120 KQYQNQPSMPISSTTLPTANIQPRPTPLIPLQTPQHPKGFDIPQANPISVPQPSQIPSVS 179

Query: 181 PISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFHQ-YA 239
           PI   SA+QPP LHQPQ+  AS QLQ PLQ+    H+P Q  LP   RP +  +FHQ Y 
Sbjct: 180 PIL-PSAAQPPLLHQPQISTASMQLQQPLQTAEIHHLPPQAQLPPHSRPPTGPNFHQHYP 238

Query: 240 PHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPV-PSQPLPQSVYQAGGS 298
           P +G  + +Q P   Q  SQPM+HSG   P  +G SF QGQ  +    P PQS+YQAGGS
Sbjct: 239 PQMGHNMNYQPPGIPQHVSQPMFHSGTKLPPGLGNSFPQGQSGLPSQPPPPQSMYQAGGS 298

Query: 299 RLGSDFNNQIGNSMQIDRGSWMSGPPENPAF-TQLSGPPPAVS---GQMGPGNQPPRPSS 354
           +LG++F NQ+G S   DRG WM GPPENP    QLSGPPP  S   GQMGP NQP     
Sbjct: 299 KLGTEFMNQVGTSKPADRGPWMPGPPENPTLPQQLSGPPPIPSVPGGQMGPNNQPRPAPP 358

Query: 355 LSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
           LS EME+ LLQQVMSL+PEQI+LLPPEQRNQVLQLQ+ILRQ
Sbjct: 359 LSQEMEKMLLQQVMSLTPEQINLLPPEQRNQVLQLQKILRQ 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524138|ref|XP_003530689.1| PREDICTED: uncharacterized protein LOC100801770 [Glycine max]

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 246/401 (61%), Positives = 288/401 (71%), Gaps = 15/401 (3%)

Query: 1   MAGKQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQI 60
           MAGKQV G+GLPANLAGMSKNQLY+IM+QMK+LIEQN+QQARQILIQNP+LTKALFQAQI
Sbjct: 1   MAGKQV-GEGLPANLAGMSKNQLYDIMSQMKNLIEQNQQQARQILIQNPMLTKALFQAQI 59

Query: 61  MLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIR 120
           MLGMV+ PQV+P VQP   Q+ QQ     QQPN Q      G  G QDQ   SQTQ  +R
Sbjct: 60  MLGMVQAPQVVPKVQPMVSQNNQQPVQPTQQPNIQPAPLLPGHGGAQDQAGVSQTQIPLR 119

Query: 121 KQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMP 180
           K HQNQP++P+SSA +PAA  QSQPM +H+L +PQ  KG P   +  +SLPQ SQ  ++P
Sbjct: 120 K-HQNQPSVPVSSA-VPAARHQSQPMAAHSLPMPQHPKGHPTPQMALVSLPQSSQLPNIP 177

Query: 181 PISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFH-QYA 239
           P S  S+SQP  LH  QM  ASSQLQ P+Q++G    PLQPPLP Q RP ++ +FH QY 
Sbjct: 178 PPSLQSSSQP--LHPTQMATASSQLQQPMQTSG--FPPLQPPLPPQIRPTALPTFHPQYP 233

Query: 240 PHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSR 299
           P +G+ +GFQH  A     Q M+H G  P AS+G +F QGQ P+P QP  Q  YQ G   
Sbjct: 234 PQMGANMGFQHAGASHNLPQSMFHPGTKPSASVGSTFPQGQTPLPGQPSSQPPYQVGNMP 293

Query: 300 LGSDFNNQIGNSMQIDRG-SWMSGPPENPAFTQLS---GPPPAVSGQMG-PGNQPPRPSS 354
           LG DF NQ GN+MQ+DRG SWM GP EN     LS   GPP  VSGQMG    QP RP  
Sbjct: 294 LGPDFGNQAGNAMQVDRGSSWMLGPSEN--LAHLSGPPGPPSVVSGQMGAAAKQPLRPPG 351

Query: 355 LSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
           L+PEME+ALLQQVMSL+PEQI+LLPPEQRNQVLQLQQ+LRQ
Sbjct: 352 LTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 392

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634660|gb|ACU17692.1| unknown [Glycine max]

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 234/400 (58%), Positives = 277/400 (69%), Gaps = 18/400 (4%)

Query: 1   MAGKQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQI 60
           MAGKQV G+GL  NLAGMSKNQLY+IM+QMKSLIEQN+QQA+QILIQNP+LTKALFQAQI
Sbjct: 1   MAGKQVGGEGLSVNLAGMSKNQLYDIMSQMKSLIEQNQQQAKQILIQNPMLTKALFQAQI 60

Query: 61  MLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIR 120
           MLGMV+ PQ +P VQP   Q+  QS    Q+PN Q      G  G QDQ   SQTQ  +R
Sbjct: 61  MLGMVQAPQTVPKVQPMVPQNNLQSVQPTQKPNIQPAPLLPGLGGAQDQAGVSQTQIPLR 120

Query: 121 KQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMP 180
           K HQNQP++P+SSA +PA + QSQPM + +L +PQQ KG     +   SLPQ SQ  ++P
Sbjct: 121 K-HQNQPSVPVSSA-VPALSHQSQPMAAQSLTMPQQPKGHLAPQVALASLPQSSQLPNIP 178

Query: 181 PISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFH-QYA 239
             S HS SQP  LH  QM  ASS LQ PL + G PHM    PLP Q R  +M +FH QY 
Sbjct: 179 SPSLHSLSQP--LHPTQMSTASSHLQHPLLTPGFPHM----PLPPQIRQPAMPTFHPQYP 232

Query: 240 PHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSR 299
           P +G+ +GFQH  A    SQ M+H G  PPAS+G +F QG   +PSQ   Q  YQ G   
Sbjct: 233 PQMGANLGFQHAGASHNLSQSMFHPGTKPPASVGSTFPQG---LPSQKSSQPPYQVGNVP 289

Query: 300 LGSDFNNQIGNSMQIDRG-SWMSGPPENPAFTQLSGPPP---AVSGQMGPGNQPPRPSSL 355
            G +F NQ GN+MQ+DRG S M GP +N     LSGPP     VSGQMG  NQP RP +L
Sbjct: 290 SGPEFGNQAGNAMQVDRGASLMPGPSDN--LAHLSGPPGPPYVVSGQMGAANQPLRPPAL 347

Query: 356 SPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
           +P+ME+ALLQQVMSL+PEQI+LLPPEQRNQVLQLQQ+LRQ
Sbjct: 348 TPDMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513105|ref|XP_003525254.1| PREDICTED: uncharacterized protein LOC100811481 [Glycine max]

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 237/398 (59%), Positives = 278/398 (69%), Gaps = 22/398 (5%)

Query: 1   MAGKQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQI 60
           MAGK V G+GL ANLAGMSKNQLY+IM+QMK+LIEQN+QQARQILIQNP+LTKALFQAQI
Sbjct: 1   MAGKHVGGEGLAANLAGMSKNQLYDIMSQMKNLIEQNQQQARQILIQNPMLTKALFQAQI 60

Query: 61  MLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIR 120
           MLGMV+ PQV+  V+P   Q  QQS   +Q+PN Q      G  G QDQ   SQTQ  +R
Sbjct: 61  MLGMVQAPQVVSKVRPMVSQSNQQSVQLIQKPNIQPAPLLPGHGGAQDQAGVSQTQIPLR 120

Query: 121 KQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMP 180
           K HQNQP++PISSA +PA + QSQPM +H+L +PQQ KG P   +  +SLPQ SQ  ++P
Sbjct: 121 K-HQNQPSVPISSA-VPAMSHQSQPMAAHSLPMPQQHKGHPTPQMAPVSLPQSSQLPNVP 178

Query: 181 PISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFH-QYA 239
                     PSLHQ QM  ASSQLQ PLQ++G    PLQPPLP Q RP ++ +FH QY 
Sbjct: 179 ---------LPSLHQTQMATASSQLQQPLQTSG--FPPLQPPLPPQIRPTALPTFHPQYP 227

Query: 240 PHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSR 299
           P VG+ +GFQH        Q M H G  P AS+G +F QGQ P+P QP  Q  YQ G   
Sbjct: 228 PQVGANMGFQHAGTSHNLPQSMIHPGTKPSASVGSTFPQGQTPLPGQPSSQPPYQVGNMP 287

Query: 300 LGSDFNNQIGNSMQIDRG-SWMSGPPENPAFTQLSGPPPAVSGQM-GPGNQPPRPSSLSP 357
           LG DF NQ GN+MQ+DRG SW+ GP EN     LSGPP    GQM    NQ  RP  L+P
Sbjct: 288 LGPDFGNQAGNAMQVDRGSSWLPGPSEN--LAHLSGPP----GQMSAAANQLLRPPGLTP 341

Query: 358 EMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
           EME+ALLQQVMSL+PEQI+LLPPEQRNQVLQLQQ+LRQ
Sbjct: 342 EMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521139|ref|XP_003630858.1| Proline-rich protein [Medicago truncatula] gi|355524880|gb|AET05334.1| Proline-rich protein [Medicago truncatula] gi|388509644|gb|AFK42888.1| unknown [Medicago truncatula]

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 239/399 (59%), Positives = 291/399 (72%), Gaps = 8/399 (2%)

Query: 1   MAGKQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQI 60
           MAGKQV+G+GL ANLAGMSKNQLY+IM+QMK+LIEQN+QQA+QILIQNP+LTKALFQAQI
Sbjct: 1   MAGKQVSGEGLSANLAGMSKNQLYDIMSQMKNLIEQNQQQAKQILIQNPMLTKALFQAQI 60

Query: 61  MLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIR 120
           MLGMV+  Q +P VQP A Q+ QQS    Q+P+ Q       Q G+QDQ   SQTQ   R
Sbjct: 61  MLGMVQSQQAVPKVQPIAPQNNQQSVQPTQRPSVQPAPILPAQGGIQDQAGVSQTQIPPR 120

Query: 121 KQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMP 180
           K HQNQP++P+S A++PA + QSQP  +H+LQ+PQQ KG     +   S+PQ SQ   +P
Sbjct: 121 K-HQNQPSVPVSYAAVPATSHQSQPTAAHSLQMPQQPKGHLTPQVAPASVPQSSQLPHIP 179

Query: 181 PISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFH-QYA 239
           P S HS+SQP  LH  QMP ASSQ   PLQ+ G  HMPLQPPLP QPRP S+Q+FH QY 
Sbjct: 180 PPSVHSSSQP--LHPTQMPTASSQAHQPLQTPGFSHMPLQPPLPPQPRPPSVQTFHPQYP 237

Query: 240 PHVGSTVGFQHP-AAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGS 298
           P +G+ +GFQH   A      PM+H+G  PP S+G +F  GQ  +PSQ   QS YQ G  
Sbjct: 238 PPIGANLGFQHAGGASHNLPPPMFHAGAKPP-SVGSTFPPGQALLPSQQSSQSSYQVGNI 296

Query: 299 RLGSDFNNQIGNSMQIDRG-SWMSGPPENPA-FTQLSGPPPAVSGQMGPGNQPPRPSSLS 356
             GSDF++Q GN+MQI+RG SWM GP EN A  +   GP   VSGQ+G  NQPPRP +L+
Sbjct: 297 PFGSDFSSQAGNAMQIERGSSWMPGPSENLAQHSGPQGPSSMVSGQIGAANQPPRPPALT 356

Query: 357 PEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
           P+ME+ALLQQVMSL+PEQI+LLPPEQRNQVLQLQ +LR+
Sbjct: 357 PDMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQLMLRK 395

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582753|ref|XP_002532153.1| proline-rich protein, putative [Ricinus communis] gi|223528163|gb|EEF30227.1| proline-rich protein, putative [Ricinus communis]

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 210/337 (62%), Positives = 244/337 (72%), Gaps = 8/337 (2%)

Query: 61  MLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIR 120
           MLGMV+PPQVIPSVQP A Q  QQS+   +Q N QA  +    + LQ+Q   SQ Q  +R
Sbjct: 1   MLGMVQPPQVIPSVQPAASQQSQQSSQASKQSNIQAAHS----LALQEQAVMSQNQPPMR 56

Query: 121 KQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMP 180
           KQHQNQP++ ISS S P +NLQSQPM SH LQ PQQ KG  N  +  +S+PQ SQ  ++P
Sbjct: 57  KQHQNQPSISISSTSAPPSNLQSQPMPSHPLQAPQQPKGHLNPQVPPISVPQSSQLPNIP 116

Query: 181 PISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSF-HQYA 239
           P+  HSASQ P LHQPQ+P  S+ LQ PLQ+TG PHMPLQPPLP Q R  S  +F HQY 
Sbjct: 117 PLPLHSASQQPPLHQPQVPTVSTPLQQPLQTTGIPHMPLQPPLPPQSRLPSAPNFHHQYG 176

Query: 240 PHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSR 299
           P +   VGFQHP A Q  SQPMYH    P AS+GPSF QGQPP+PSQ  P  +YQAGGS 
Sbjct: 177 PLMRPNVGFQHPGAPQHPSQPMYHPVNKPQASMGPSFPQGQPPLPSQIPP--MYQAGGSH 234

Query: 300 LGSDFNNQIGNSMQIDRG-SWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPE 358
           LG++FNNQ G+SMQ+DRG SWMS  PE+ A   L GPP    G MG GNQP R + L+PE
Sbjct: 235 LGAEFNNQGGSSMQVDRGSSWMSSQPESSAAAPLPGPPQLNPGHMGLGNQPNRATPLTPE 294

Query: 359 MEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
           ME+ALLQQVMSL+PEQISLLPPEQRNQVLQLQQ+LRQ
Sbjct: 295 MEKALLQQVMSLTPEQISLLPPEQRNQVLQLQQMLRQ 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330606|ref|NP_177525.2| hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana] gi|17979388|gb|AAL49919.1| putative proline-rich protein precursor [Arabidopsis thaliana] gi|20465539|gb|AAM20252.1| putative proline-rich protein precursor [Arabidopsis thaliana] gi|332197394|gb|AEE35515.1| hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana]

 Score =  287 bits (734), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 218/406 (53%), Positives = 257/406 (63%), Gaps = 29/406 (7%)

Query: 1   MAGKQVAGDG-LPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQ 59
           MAGKQ+ GDG LPANLAGM+K+QLY+IM+QMK+LI+QN QQAR+ILI+NPLLTKALFQAQ
Sbjct: 1   MAGKQIGGDGGLPANLAGMTKSQLYDIMSQMKTLIDQNHQQAREILIRNPLLTKALFQAQ 60

Query: 60  IMLGMVKPPQVIPSVQPPALQHPQQSAPQL-QQPNFQATQAS-SGQVGLQDQTSASQTQT 117
           IMLGMV+PPQV P V+P A+Q PQQS   +  +PN QA  +S  G   + +  +  Q Q 
Sbjct: 61  IMLGMVQPPQVTPKVEPQAVQQPQQSHQSIPPKPNVQAHMSSFQGGGSVHEPANTMQPQA 120

Query: 118 SIRKQ-HQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQ- 175
            IRK        MP    S+ A + QSQP  SH      Q +G  N  +T+MS PQ SQ 
Sbjct: 121 PIRKHPTPQPMPMPPPPPSVSANSAQSQPRFSHP-----QRQGHLNPAVTSMSHPQSSQV 175

Query: 176 HSSMPPISHHSASQPPSLHQPQMPAASSQL-QPPLQSTGPPHMPLQPPLPQQPRPASMQS 234
            ++ PP SHH  SQ P  H   +PA+S+QL Q P+ S G PH+       QQ RP     
Sbjct: 176 QNAPPPASHHPTSQQPPFHHLDIPASSTQLQQQPMHSGGGPHV-----AQQQSRPY---- 226

Query: 235 FHQYA-PHVGSTVGFQHPAA-QQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSV 292
            HQY     G   GFQH  A  Q  SQPMYHSG  PPAS GP F QGQP +PSQP     
Sbjct: 227 HHQYGQAQTGPNTGFQHHGAPTQHLSQPMYHSGNRPPASGGPQFPQGQPHLPSQP----T 282

Query: 293 YQAGGSRLGSDFNNQIGNSMQIDRG-SWMSGPPENPAFTQ--LSGPPPAVSGQMGPGNQP 349
           YQ GG   G   NNQ+   M  DRG SWM+G  E+   T     GP P  S     G  P
Sbjct: 283 YQGGGQYRGDYNNNQLAGLMAQDRGPSWMAGQSESSNITHLPGLGPVPPPSQVGPGGGPP 342

Query: 350 PRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
           PRP+ +S EME+ALLQQVMSL+PEQI+LLPPEQRNQVLQLQQILRQ
Sbjct: 343 PRPAPISAEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQILRQ 388

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722127|ref|NP_001237489.1| proline-rich protein precursor [Glycine max] gi|3552013|gb|AAC34889.1| proline-rich protein precursor [Glycine max]

 Score =  277 bits (708), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 192/351 (54%), Positives = 230/351 (65%), Gaps = 18/351 (5%)

Query: 50  LLTKALFQAQIMLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQ 109
           +LTKALFQAQIMLGMV+ PQ +P VQP   Q+  QS    Q+PN Q      G  G QDQ
Sbjct: 1   MLTKALFQAQIMLGMVQAPQTVPKVQPMVPQNNLQSVQPTQKPNIQPAPLLPGLGGAQDQ 60

Query: 110 TSASQTQTSIRKQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMS 169
              SQTQ  +RK HQNQP++P+SSA +PA + QSQPM + +L +PQQ KG     +   S
Sbjct: 61  AGVSQTQIPLRK-HQNQPSVPVSSA-VPALSHQSQPMAAQSLTMPQQPKGHLAPQVALAS 118

Query: 170 LPQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRP 229
           LPQ SQ  ++P  S HS SQP  LH  QM  ASS LQ PL + G PHMPL P    Q R 
Sbjct: 119 LPQSSQLPNIPSPSLHSLSQP--LHPTQMSTASSHLQHPLLTPGFPHMPLPP----QIRQ 172

Query: 230 ASMQSFH-QYAPHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPL 288
            +M +FH QY P +G+ +GFQH  A    SQ M+H G  PPAS+G +F QG   +PSQ  
Sbjct: 173 PAMPTFHPQYPPQMGANLGFQHAGASHNLSQSMFHPGTKPPASVGSTFPQG---LPSQKS 229

Query: 289 PQSVYQAGGSRLGSDFNNQIGNSMQIDRG-SWMSGPPENPAFTQLSGPPP---AVSGQMG 344
            Q  YQ G    G +F NQ GN+MQ+DRG S M GP +      LSGPP     VSGQMG
Sbjct: 230 SQPPYQVGNVPSGPEFGNQAGNAMQVDRGASLMPGPSDT--LAHLSGPPGPPYVVSGQMG 287

Query: 345 PGNQPPRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
             NQP RP +L+P+ME+ALLQQVMSL+PEQI+LLPPEQRNQVLQLQQ+LRQ
Sbjct: 288 AANQPLRPPALTPDMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842135|ref|XP_002888949.1| hypothetical protein ARALYDRAFT_476521 [Arabidopsis lyrata subsp. lyrata] gi|297334790|gb|EFH65208.1| hypothetical protein ARALYDRAFT_476521 [Arabidopsis lyrata subsp. lyrata]

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 216/406 (53%), Positives = 255/406 (62%), Gaps = 29/406 (7%)

Query: 1   MAGKQVAGDG-LPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQ 59
           MAGKQ+ GDG LPANLAGM+K+QLY+IM+QMK+LI+QN QQAR+ILI+NPLLTKALFQAQ
Sbjct: 1   MAGKQIGGDGGLPANLAGMTKSQLYDIMSQMKTLIDQNHQQAREILIRNPLLTKALFQAQ 60

Query: 60  IMLGMVKPPQVIPSVQPPALQHPQQSA-PQLQQPNFQATQAS-SGQVGLQDQTSASQTQT 117
           IMLGMV+PPQ+ P V+P A+Q PQQS  P   +PN QA  +S  G   + +  +  Q Q 
Sbjct: 61  IMLGMVQPPQLTPKVEPQAMQQPQQSHQPIPLKPNVQAHMSSIQGGGSVHEPANTMQPQA 120

Query: 118 SIRKQHQNQPAMPISSASLPAANLQS-QPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQ- 175
            IRK    QP       S+ A N    QP  SH      Q +G  N  +T+MS  Q SQ 
Sbjct: 121 PIRKHPTPQPMPMPPPPSVSATNTALPQPRFSHP-----QRQGHLNPTVTSMSHQQSSQV 175

Query: 176 HSSMPPISHHSASQPPSLHQPQMPAASSQL-QPPLQSTGPPHMPLQPPLPQQPRPASMQS 234
            ++ PP  HH  SQPP  H   +PA+S+QL Q P+ S G PH+P      QQPRP     
Sbjct: 176 QNAPPPAPHHPTSQPPPFHHLDIPASSTQLQQQPMHSGGGPHLP-----QQQPRPY---- 226

Query: 235 FHQYA-PHVGSTVGFQHPAA-QQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSV 292
            HQY     G   GFQH  A  Q  SQPM+HSG  PPAS  P F QGQ  +PSQP     
Sbjct: 227 HHQYGQAQTGPNTGFQHHGAPPQHLSQPMFHSGNRPPASGVPQFPQGQQHLPSQP----T 282

Query: 293 YQAGGSRLGSDFNNQIGNSMQIDRG-SWMSGPPENPAFTQ--LSGPPPAVSGQMGPGNQP 349
           YQ GG   G   NNQ+   M  DRG SWM+G  E+   T     GP P  S     G QP
Sbjct: 283 YQGGGQYRGDYNNNQLAGLMAQDRGPSWMAGHSESSNITHLPGLGPVPPPSQVGPGGGQP 342

Query: 350 PRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
           PRP+ +S EME+ALLQQVMSL+PEQI+LLPPEQRNQVLQLQQILRQ
Sbjct: 343 PRPAPISAEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQILRQ 388

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
TAIR|locus:2027829	388	ESP1 "AT1G73840" [Arabidopsis	0.944	0.961	0.482	8.1e-76
TAIR|locus:2013016	461	CSTF64 "cleavage stimulating f	0.167	0.143	0.492	1.1e-21
ZFIN|ZDB-GENE-031118-2	488	cstf2 "cleavage stimulation fa	0.197	0.159	0.397	4.6e-16
UNIPROTKB|Q5ZLS0	475	CSTF2 "Uncharacterized protein	0.154	0.128	0.377	6.9e-13
UNIPROTKB|E2R1C1	435	CSTF2T "Uncharacterized protei	0.154	0.140	0.360	8.6e-13
UNIPROTKB|E1BVJ6	592	CSTF2 "Uncharacterized protein	0.154	0.103	0.377	1.1e-12
UNIPROTKB|F1MVI1	592	CSTF2 "Cleavage stimulation fa	0.154	0.103	0.377	9e-12
UNIPROTKB|E1C8T0	608	CSTF2 "Uncharacterized protein	0.154	0.100	0.377	1e-11
UNIPROTKB|G3MZ78	632	CSTF2T "Uncharacterized protei	0.154	0.096	0.360	2.7e-11
UNIPROTKB|G1K177	644	CSTF2 "Cleavage stimulation fa	0.154	0.094	0.377	2.8e-11

TAIR|locus:2027829 ESP1 "AT1G73840" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 198/410 (48%), Positives = 235/410 (57%)

Query:     1 MAGKQVAGDG-LPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQ 59
             MAGKQ+ GDG LPANLAGM+K+QLY+IM+QMK+LI+QN QQAR+ILI+NPLLTKALFQAQ
Sbjct:     1 MAGKQIGGDGGLPANLAGMTKSQLYDIMSQMKTLIDQNHQQAREILIRNPLLTKALFQAQ 60

Query:    60 IMLGMVKPPQVIPSVXXXXXXXXXXXXXXXXXX-NFQATQAS-SGQVGLQDXXXXXXXXX 117
             IMLGMV+PPQV P V                   N QA  +S  G   + +         
Sbjct:    61 IMLGMVQPPQVTPKVEPQAVQQPQQSHQSIPPKPNVQAHMSSFQGGGSVHEPANTMQPQA 120

Query:   118 XIRKQHQNQPA-MPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQ- 175
              IRK    QP  MP    S+ A + QSQP  SH    PQ+ +G  N  +T+MS PQ SQ 
Sbjct:   121 PIRKHPTPQPMPMPPPPPSVSANSAQSQPRFSH----PQR-QGHLNPAVTSMSHPQSSQV 175

Query:   176 HSSMPPISHHSASQPPSLHQPQMPAASSQLQP-PLQSTGXXXXXXXXXXXXXXXXASMQS 234
              ++ PP SHH  SQ P  H   +PA+S+QLQ  P+ S G                 S   
Sbjct:   176 QNAPPPASHHPTSQQPPFHHLDIPASSTQLQQQPMHSGGGPHVAQQQ---------SRPY 226

Query:   235 FHQYAP-HVGSTVGFQHPAAQ-QRSSQPMYHSGPNPPASIGXXXXXXXXXXXXXXXXXXX 292
              HQY     G   GFQH  A  Q  SQPMYHSG  PPAS G                   
Sbjct:   227 HHQYGQAQTGPNTGFQHHGAPTQHLSQPMYHSGNRPPASGGPQFPQGQPHLPSQPTYQ-- 284

Query:   293 XXAGGSRLGSDFNN-QIGNSMQIDRG-SWMSGPPENPAFTQLSG----PPPAVSGQMGPG 346
                GG +   D+NN Q+   M  DRG SWM+G  E+   T L G    PPP+   Q+GPG
Sbjct:   285 ---GGGQYRGDYNNNQLAGLMAQDRGPSWMAGQSESSNITHLPGLGPVPPPS---QVGPG 338

Query:   347 N-QPPRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
                PPRP+ +S EME+ALLQQVMSL+PEQI+LLPPEQRNQVLQLQQILRQ
Sbjct:   339 GGPPPRPAPISAEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQILRQ 388

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006396 "RNA processing" evidence=IMP

GO:0035194 "posttranscriptional gene silencing by RNA" evidence=IMP

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006470 "protein dephosphorylation" evidence=RCA

GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

TAIR|locus:2013016 CSTF64 "cleavage stimulating factor 64" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
 Identities = 33/67 (49%), Positives = 48/67 (71%)

Query:     7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
             A D L  +LA MS++QL EI++ +K +  QN++ ARQ+L+  P L KA+F AQ+MLG+V 
Sbjct:   163 ASDPLALHLAKMSRSQLTEIISSIKLMATQNKEHARQLLVSRPQLLKAVFLAQVMLGIVS 222

Query:    67 PPQVIPS 73
             P QV+ S
Sbjct:   223 P-QVLQS 228

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003729 "mRNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0031123 "RNA 3'-end processing" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048589 "developmental growth" evidence=IMP

ZFIN|ZDB-GENE-031118-2 cstf2 "cleavage stimulation factor, 3' pre-RNA, subunit 2" [Danio rerio (taxid:7955)]

 Score = 133 (51.9 bits), Expect = 4.6e-16, Sum P(3) = 4.6e-16
 Identities = 35/88 (39%), Positives = 53/88 (60%)

Query:   314 IDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPP-RP---SSLSPEMEQ--ALLQQV 367
             +D    ++GP   P    + GPPP   G MGPG  PP RP   S +S +  +  AL+ QV
Sbjct:   400 VDARGPIAGP-RGPVAGGMQGPPP--HG-MGPGAPPPARPGPGSDVSSQDHEKAALIMQV 455

Query:   368 MSLSPEQISLLPPEQRNQVLQLQQILRQ 395
             + L+PEQI++LP EQR  +L L++ +++
Sbjct:   456 LQLTPEQIAMLPAEQRQSILILKEQIQK 483

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5ZLS0 CSTF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 6.9e-13, Sum P(3) = 6.9e-13
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query:     7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
             A + +   +A +   Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V 
Sbjct:   124 APESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183

Query:    67 P 67
             P
Sbjct:   184 P 184

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R1C1 CSTF2T "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 121 (47.7 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
 Identities = 22/61 (36%), Positives = 40/61 (65%)

Query:     7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
             A + +   +A +   Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ ++ 
Sbjct:   128 APESITRAVASLPPEQMFELMKQMKLCVQNSHQEARSMLLQNPQLAYALLQAQVVMRIMD 187

Query:    67 P 67
             P
Sbjct:   188 P 188

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BVJ6 CSTF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query:     7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
             A + +   +A +   Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V 
Sbjct:   124 APESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183

Query:    67 P 67
             P
Sbjct:   184 P 184

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MVI1 CSTF2 "Cleavage stimulation factor subunit 2" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 9.0e-12, Sum P(3) = 9.0e-12
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query:     7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
             A + +   +A +   Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V 
Sbjct:   124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183

Query:    67 P 67
             P
Sbjct:   184 P 184

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1C8T0 CSTF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query:     7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
             A + +   +A +   Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V 
Sbjct:   124 APESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183

Query:    67 P 67
             P
Sbjct:   184 P 184

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3MZ78 CSTF2T "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 121 (47.7 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
 Identities = 22/61 (36%), Positives = 40/61 (65%)

Query:     7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
             A + +   +A +   Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ ++ 
Sbjct:   124 APESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMD 183

Query:    67 P 67
             P
Sbjct:   184 P 184

GO:0005622 "intracellular" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|G1K177 CSTF2 "Cleavage stimulation factor subunit 2" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
 Identities = 23/61 (37%), Positives = 40/61 (65%)

Query:     7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
             A + +   +A +   Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V 
Sbjct:   124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183

Query:    67 P 67
             P
Sbjct:   184 P 184

GO:0071920 "cleavage body" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XII0474 hypothetical protein (396 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	395
pfam14327	84	pfam14327, CSTF2_hinge, Hinge domain of cleavage s	2e-13
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	9e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	0.002
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.003

>gnl|CDD|222683 pfam14327, CSTF2_hinge, Hinge domain of cleavage stimulation factor subunit 2

 Score = 65.3 bits (160), Expect = 2e-13
 Identities = 26/63 (41%), Positives = 41/63 (65%)

Query: 14 NLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPS 73
           L+ +   QL E+++QMK+L +QN  QARQ+L QNP L  AL QA +++G+V P  +   
Sbjct: 22 TLSKLPPEQLLELISQMKTLAQQNPDQARQLLQQNPQLAYALLQALLLMGLVDPEVITLV 81

Query: 74 VQP 76
          ++ 
Sbjct: 82 LKS 84

The hinge domain of cleavage stimulation factor subunit 2 proteins, CSTF2, is necessary for binding to the subunit CstF-77 within the polyadenylation complex and subsequent nuclear localisation. This suggests that nuclear import of a pre-formed CSTF complex is an essential step in polyadenylation. Accurate and efficient polyadenylation is essential for transcriptional termination, nuclear export, translation, and stability of eukaryotic mRNAs. CSTF2 is an important regulatory subunit of the polyadenylation complex. Length = 84

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 38/220 (17%), Positives = 56/220 (25%), Gaps = 17/220 (7%)

Query: 35  EQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNF 94
           E    QA +   Q     + +   + +   ++  Q  P +  P  Q   Q  P  Q    
Sbjct: 133 EPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAA-- 190

Query: 95  QATQASSGQVGLQDQTSASQTQTSIRKQHQNQPAMPISSASLPAANLQSQPMHSHALQVP 154
              Q    Q     Q      +    +Q    P+                P+     Q P
Sbjct: 191 FPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQ----------APAQPPLPPQLPQQP 240

Query: 155 QQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQSTGP 214
             L+      L+    P P Q            +QPP  +QP           P     P
Sbjct: 241 PPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHP-----GLPQGQNAP 295

Query: 215 PHMPLQPPLPQQPRPASMQSFHQYAPHVGSTVGFQHPAAQ 254
              P QP L    +    Q            +  Q   A 
Sbjct: 296 LPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREAL 335

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 41/211 (19%), Positives = 56/211 (26%), Gaps = 19/211 (9%)

Query: 107 QDQTSASQTQTSIRKQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLT 166
                A ++Q   +   Q   ++    A L       Q        +PQ +  R  A   
Sbjct: 134 PQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQ 193

Query: 167 TMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQ 226
                QP  +   P            L  P   A +    PP     PP +         
Sbjct: 194 QGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQ-APAQPPLPPQLPQQPPPLQQPQFPGLS 252

Query: 227 PRPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQ----PP 282
            +                    Q P  QQ+  QP     P    +  P   QGQ    PP
Sbjct: 253 QQMPPPPP--------------QPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPP 298

Query: 283 VPSQPLPQSVYQAGGSRLGSDFNNQIGNSMQ 313
                L   V Q  G + G  F  Q+    Q
Sbjct: 299 PQQPQLLPLVQQPQGQQRGPQFREQLVQLSQ 329

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 61/337 (18%), Positives = 89/337 (26%), Gaps = 26/337 (7%)

Query: 67   PPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIRKQHQNQ 126
            PP  +P         P   +P   +P+             +D  +  +     R +   +
Sbjct: 2613 PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

Query: 127  PAMPISSASLP---AANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSS---MP 180
             A   S    P   AA      + S A   P      P       + P P   ++     
Sbjct: 2673 AAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQAS 2732

Query: 181  PISHHSASQPPSLHQPQMPAASSQLQPPLQSTGP-----PHMPLQPPLPQQPRPASMQSF 235
            P    + + P     P  P   ++   P  + GP     P  P   P  +  RPA     
Sbjct: 2733 PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLS 2792

Query: 236  HQYAPHVGSTVGFQHPAA-QQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQ 294
                           PAA    ++     + P  P     S Q   PP P  P P S+  
Sbjct: 2793 ESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852

Query: 295  AGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSS 354
             G    G D   +               P  +PA    +   P V     P       S 
Sbjct: 2853 GGSVAPGGDVRRR--------------PPSRSPAAKPAAPARPPVRRLARPAVSRSTESF 2898

Query: 355  LSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQ 391
              P  +     Q  +  P Q    PP           
Sbjct: 2899 ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPP 2935

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 46/213 (21%), Positives = 70/213 (32%), Gaps = 9/213 (4%)

Query: 77   PALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIRKQHQNQPAMPISSASL 136
            P+   P      +  P      A+S    L   TSA  T           P++P+  +  
Sbjct: 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG-PPPPSLPLGGSVA 2857

Query: 137  PAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQP 196
            P  +++ +P        P         P+  ++ P  S+ +    +      +PP    P
Sbjct: 2858 PGGDVRRRPPSRSPAAKP---AAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAP 2914

Query: 197  QMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRP----ASMQSFHQYAPHVGSTVGFQHPA 252
              P    Q  PP Q   PP  P +P  P  P      A   S     P +G+ V  +   
Sbjct: 2915 PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV 2974

Query: 253  AQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPS 285
             + R  QP   S   P +S  P        V S
Sbjct: 2975 PRFRVPQPA-PSREAPASSTPPLTGHSLSRVSS 3006

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 50/248 (20%), Positives = 71/248 (28%), Gaps = 12/248 (4%)

Query: 127  PAMPISSASLPAANLQSQPMHSHALQVP----QQLKGRPNAPLTTMSLPQPSQHSSMPPI 182
            P  P+  A+ PAA  +S P    A +           RP+AP  +     P      P  
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610

Query: 183  SHHSASQPPSLHQPQMPA------ASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFH 236
                +  PP  H P  P       A+     P  +  PP  P   P P +          
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 237  QYAPHVGSTVGFQHPAAQQRSSQPMYHSG--PNPPASIGPSFQQGQPPVPSQPLPQSVYQ 294
              A    S        A + +   +      P PP +  P+        P  P P +  Q
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730

Query: 295  AGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSS 354
            A  +   +     +        G      P   A      PP A +         P  +S
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790

Query: 355  LSPEMEQA 362
            LS   E  
Sbjct: 2791 LSESRESL 2798

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 42/257 (16%), Positives = 59/257 (22%), Gaps = 15/257 (5%)

Query: 143 SQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAAS 202
                S         +    A      +P      S+   +     QPP   + Q P   
Sbjct: 89  PDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQ-PQPQ 147

Query: 203 SQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMY 262
           +  Q  L          Q     Q      Q   Q  P       F      ++      
Sbjct: 148 TPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPP--RQAAFPQQGPPEQPPGYPQ 205

Query: 263 HSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSRLGSDFNNQIGNSMQIDRGSWMSG 322
               +P       F       P+QP            L       +   M          
Sbjct: 206 PPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQM-------PPP 258

Query: 323 PPENPAFTQLSGPPPAVSGQMGPGNQPPRP-----SSLSPEMEQALLQQVMSLSPEQISL 377
           PP+ P   Q    P A           P       + L P  +  LL  V     +Q   
Sbjct: 259 PPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGP 318

Query: 378 LPPEQRNQVLQLQQILR 394
              EQ  Q+ Q Q+   
Sbjct: 319 QFREQLVQLSQQQREAL 335

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 16/138 (11%)

Query: 217 MPLQPPLPQQPRPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQ-----------PMYHSG 265
           M LQP + Q P  + M       P        Q P  Q                PM   G
Sbjct: 376 MQLQPRMRQLPMGSPMGGAMGQPP-----YYGQGPQQQFNGQPLGWPRMSMMPTPMGPGG 430

Query: 266 PNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSRLGSDFNNQIGNSMQIDRGSWMSGPPE 325
           P  P  + P      P   +Q   Q           +  +  +   +   + +   G   
Sbjct: 431 PLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQN 490

Query: 326 NPAFTQLSGPPPAVSGQM 343
                 L+   P +  Q+
Sbjct: 491 KKLAQVLASATPQMQKQV 508

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 3/122 (2%)

Query: 161 PNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHM-PL 219
           P       +     QH   PP +  +  + P    P+          P Q    P   P 
Sbjct: 75  PANAQEHEAARPSPQHQYQPPYAS-AQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPA 133

Query: 220 QPPLPQQPRPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQG 279
             P P+QP    +      AP        Q      + ++P+    P P A   P   + 
Sbjct: 134 YQPQPEQPLQQPVSPQVAPAPQP-VHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKP 192

Query: 280 QP 281
           + 
Sbjct: 193 KR 194

Length = 333

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	395
PF14327	84	CSTF2_hinge: Hinge domain of cleavage stimulation	99.83
PF14304	46	CSTF_C: Transcription termination and cleavage fac	99.36
KOG0108	435	consensus mRNA cleavage and polyadenylation factor	98.89

>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G

Probab=99.83  E-value=1.7e-21  Score=157.77  Aligned_cols=68  Identities=50%  Similarity=0.728  Sum_probs=56.3

Q ss_pred             CCCCCCchhhhhcCCCHHHHHHHHHHHHHHHhhCHHHHHHHHHhCCchHHHHHHHHHHhcCCCCCCCC
Q 040162            4 KQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVI   71 (395)
Q Consensus         4 ~~~apD~IS~tLasmpP~QL~ELLsqMK~Li~qnP~qARqLL~qNPQLAyALfQAqLlMGmVDp~~Vl   71 (395)
                      +..+.|.|+++|++|+++||||||++||.|+.+||++||+||.+||||+||||||+|+||+||++.+.
T Consensus        12 ~~~~~~~Is~~l~~l~~~ql~ell~~mK~l~~~~p~~ar~lL~~nPqLa~Al~qa~l~lg~vd~~v~~   79 (84)
T PF14327_consen   12 PQSAPDAISQTLSSLPPEQLYELLSQMKQLAQQNPEQARQLLQQNPQLAYALFQALLLLGMVDPDVVQ   79 (84)
T ss_dssp             ---HHHHHHTTSSTSHHHHHHHHHHHHHHHHC----HHHHHHHS-THHHHHHHHHHHHTSS-SSSCHH
T ss_pred             ccCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCCCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999985544

>PF14304 CSTF_C: Transcription termination and cleavage factor C-terminal; PDB: 2J8P_A

Probab=99.36  E-value=6.2e-13  Score=99.12  Aligned_cols=36  Identities=58%  Similarity=0.886  Sum_probs=31.5

Q ss_pred             HHHHHHHHHcCCHHHHhcCChHHHHHHHHHHHHHhC
Q 040162          360 EQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ  395 (395)
Q Consensus       360 ~~aLl~QVl~Lt~eqI~~LPp~qR~QIl~Lr~ql~~  395 (395)
                      ++|||+|||+||+||||+||++||++|++||++|.+
T Consensus         7 q~aLl~QVL~Lt~eQI~~LPp~qR~~I~~Lr~ql~~   42 (46)
T PF14304_consen    7 QAALLMQVLQLTPEQINALPPDQRQQILQLRQQLMR   42 (46)
T ss_dssp             HHHHHHHHHTS-HHHHHTS-HHHHTHHHHHHHHHH-
T ss_pred             HHHHHHHHHcCCHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            459999999999999999999999999999999974

>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]

Probab=98.89  E-value=9.8e-09  Score=105.11  Aligned_cols=73  Identities=21%  Similarity=0.231  Sum_probs=68.0

Q ss_pred             CCCCchhhhhcCCCHHHHHHHHHHHHHHH-hhCHHHHHHHHHhCCchHHH-HHHHHHHhcCCCCCCCCCCCCCCc
Q 040162            6 VAGDGLPANLAGMSKNQLYEIMTQMKSLI-EQNEQQARQILIQNPLLTKA-LFQAQIMLGMVKPPQVIPSVQPPA   78 (395)
Q Consensus         6 ~apD~IS~tLasmpP~QL~ELLsqMK~Li-~qnP~qARqLL~qNPQLAyA-LfQAqLlMGmVDp~~Vl~~~qp~~   78 (395)
                      .+.|.+...++++++++++|+++++|.++ ..++..++++|..+|+++|+ +++++.+++++|+++++..+.+.+
T Consensus       126 ~a~~~~~~~~~~~p~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~s~~~~~~~~p~~~l~~~~~~~  200 (435)
T KOG0108|consen  126 DALKGNGSGVSNEPPSQLFELLSQGANNTNKSNPTPNPSGLTIPPAIVVKNIPQSLVKLTLAKPFTALYILRPYA  200 (435)
T ss_pred             ccccccccccccCCccccccccchhhhhccccCCCcCccccccCchhhhccchhhhhhhhccChHhhhcccchhh
Confidence            45688999999999999999999999999 78999999999999999999 999999999999999998877665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	395
4eba_G	174	RNA15, KLLA0F09383P; HAT domain, heat repeat, monk	8e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-04

>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis} Length = 174

 Score = 47.8 bits (113), Expect = 8e-07
 Identities = 12/90 (13%), Positives = 36/90 (40%)

Query: 15  LAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPSV 74
           L  + K+Q   ++  ++   + +++    +L + P L+ A+ +  +  G+    Q+    
Sbjct: 51  LGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAELLLSNGVCSVDQLTQLA 110

Query: 75  QPPALQHPQQSAPQLQQPNFQATQASSGQV 104
                +  +Q+   ++    +       QV
Sbjct: 111 MASKQRPEEQTDNTVEDGLDEEKVDLLRQV 140

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 25/125 (20%), Positives = 33/125 (26%), Gaps = 2/125 (1%)

Query: 175 QHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQS 234
           Q       +     QP     PQ PAA+       Q   PP   +     QQ    + + 
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYG--QMGMPPQGAVPSMGQQQFLTPAQEQ 68

Query: 235 FHQYAPHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQ 294
            HQ      +++   H           Y     P     P  QQ QP         S   
Sbjct: 69  LHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128

Query: 295 AGGSR 299
               R
Sbjct: 129 GQNMR 133

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 21/148 (14%), Positives = 32/148 (21%)

Query: 143 SQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAAS 202
              +       P Q   +   P    +         MPP     +        P      
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 203 SQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMY 262
            Q+     S    H+   P +                P          PA  Q S+    
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 263 HSGPNPPASIGPSFQQGQPPVPSQPLPQ 290
           +  P           +  PP+    LP 
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITDLTLPP 158

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 9e-06
 Identities = 28/174 (16%), Positives = 36/174 (20%), Gaps = 7/174 (4%)

Query: 188 SQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRP-------ASMQSFHQYAP 240
           S       PQ      Q   PLQ       P  P                ++ S  Q   
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 241 HVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSRL 300
              +         Q  +S    H    P        Q   P     PL Q          
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 301 GSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSS 354
           G        N   +++   +    E P        PP            P   S
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS 175

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 23/156 (14%), Positives = 40/156 (25%), Gaps = 1/156 (0%)

Query: 146 MHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAASS-Q 204
           M  H  +V  Q + +     T +  P        P  +  S  Q     Q  +P+    Q
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 205 LQPPLQSTGPPHMPLQPPLPQQPRPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMYHS 264
              P Q      +             ++      A              QQ+       +
Sbjct: 61  FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120

Query: 265 GPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSRL 300
              P A++G + +      P   L +         L
Sbjct: 121 YGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTL 156

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 3/168 (1%)

Query: 67  PPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIRKQHQNQ 126
                     P  Q  Q   PQ        +    G        S  Q Q     Q Q  
Sbjct: 12  AQLQYGQNATPLQQPAQFMPPQ-DPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 127 PAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHS 186
             +  ++ S+   +L + P+      +  Q+  +   PL     P  +     P  +   
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 187 ASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQS 234
             +P +  Q       ++L PP+     P  PL  P  +   P+ + +
Sbjct: 131 NMRPMN--QLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSN 176

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 19/197 (9%), Positives = 40/197 (20%), Gaps = 19/197 (9%)

Query: 75  QPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIRKQHQNQPAMPISSA 134
                 +PQ      Q        A                        Q+  A  +S  
Sbjct: 3   HHKKRVYPQAQLQYGQNATPLQQPAQFM-------------------PPQDPAAAGMSYG 43

Query: 135 SLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLH 194
            +      + P       +    +          +        ++P +  ++  QP    
Sbjct: 44  QMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPV 103

Query: 195 QPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFHQYAPHVGSTVGFQHPAAQ 254
           Q   P    Q      + G P   +   +    +   +    +  P +        P   
Sbjct: 104 QMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVI 163

Query: 255 QRSSQPMYHSGPNPPAS 271
                 +     N    
Sbjct: 164 PPERMLVPSELSNASPD 180

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 17/180 (9%), Positives = 33/180 (18%), Gaps = 1/180 (0%)

Query: 127 PAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHS 186
           P   +          Q              +           ++P   Q   + P     
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 187 ASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFHQYAPHVGSTV 246
             Q        M        P +         +   +    +               + +
Sbjct: 70  HQQIDQA-TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128

Query: 247 GFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSRLGSDFNN 306
           G       Q     +    P P   +         P     +P  +  A    + S  N 
Sbjct: 129 GQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNA 188

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 23/162 (14%), Positives = 38/162 (23%), Gaps = 15/162 (9%)

Query: 224 PQQPRPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPV 283
            ++  P +   + Q A  +     F  P     +       G  P  ++    QQ     
Sbjct: 5   KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTP 64

Query: 284 PSQPLPQSVYQAGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQM 343
             + L Q + QA  S      +N                P  +P        P  +   +
Sbjct: 65  AQEQLHQQIDQATTSMNDMHLHNV---------------PLVDPNAYMQPQVPVQMGTPL 109

Query: 344 GPGNQPPRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRNQ 385
               QP    +                    I LL       
Sbjct: 110 QQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPI 151

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 5/124 (4%)

Query: 170 LPQPSQHSSMPPISHHSASQPPSLHQPQMPAASS--QLQPPLQSTGPPHMPLQPPLPQQP 227
           +     +SS+   +   +   PSLH    P   S  QL  P+ +   P   + PP     
Sbjct: 15  MFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVIS 74

Query: 228 RPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQP 287
            P    S    +     T+GF   + Q  S      S  +    +G +     P  PS  
Sbjct: 75  SPMGPHSM---SVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGN 131

Query: 288 LPQS 291
           +   
Sbjct: 132 MASF 135

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 24/136 (17%), Positives = 36/136 (26%), Gaps = 2/136 (1%)

Query: 147 HSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQ 206
           H H   V    K          SL  P+   SM   S H +  P      Q+ +  S L 
Sbjct: 3   HHHHHHVDDDDKMFSTQV--NSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS 60

Query: 207 PPLQSTGPPHMPLQPPLPQQPRPASMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMYHSGP 266
            P+   GPP   +  P+              ++          +P +     +P      
Sbjct: 61  SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120

Query: 267 NPPASIGPSFQQGQPP 282
                  PS       
Sbjct: 121 VLKVPAHPSGNMASFT 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	395
4eba_G	174	RNA15, KLLA0F09383P; HAT domain, heat repeat, monk	99.9
2l9b_A	109	MRNA 3'-END-processing protein RNA15; 3' END mRNA	99.82
2j8p_A	49	Cleavage stimulation factor 64 kDa subunit; cleava	99.36

>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}

Probab=99.90  E-value=5.6e-25  Score=198.79  Aligned_cols=68  Identities=13%  Similarity=0.251  Sum_probs=62.1

Q ss_pred             CCCCCC-chhhhhcCCCHHHHHHHHHHHHHHHhhCHHHHHHHHHhCCchHHHHHHHHHHhcCCCCCCCC
Q 040162            4 KQVAGD-GLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVI   71 (395)
Q Consensus         4 ~~~apD-~IS~tLasmpP~QL~ELLsqMK~Li~qnP~qARqLL~qNPQLAyALfQAqLlMGmVDp~~Vl   71 (395)
                      +.+++| .|+++|++|+++||||||++||.|+.+||++||+||.+||||+||||||+|+||+||+++++
T Consensus        39 ~~t~pd~~IS~~Ls~lpp~QL~eiL~qmK~l~~~nP~~ar~LL~~nPQLayAl~QAlL~mgivd~~~l~  107 (174)
T 4eba_G           39 NMTTPAMCISSELGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAELLLSNGVCSVDQLT  107 (174)
T ss_dssp             TTCCHHHHHHHHHTTSCHHHHHHHHHHHHHGGGC--CCHHHHHHSCTHHHHHHHHHHHHTSCCSSSTHH
T ss_pred             CcCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHHHhCCCCHHHHH
Confidence            456788 99999999999999999999999999999999999999999999999999999999986554

>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.82  E-value=5.4e-21  Score=162.17  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=68.3

Q ss_pred             CCCCCCC-chhhhhcCCCHHHHHHHHHHHHHHHhhCHHHHHHHHHhCCchHHHHHHHHHHhcCCCCCCCCCCCCC
Q 040162            3 GKQVAGD-GLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPSVQP   76 (395)
Q Consensus         3 ~~~~apD-~IS~tLasmpP~QL~ELLsqMK~Li~qnP~qARqLL~qNPQLAyALfQAqLlMGmVDp~~Vl~~~qp   76 (395)
                      .+++|+| .|+++|++++++||||||++||.|+..||++||+||.+||||+||||||+|+||+||++++++.+.+
T Consensus        33 ~~~~ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~nP~~a~~LL~q~PQLAyAl~QalL~m~ivd~~~l~~ll~~  107 (109)
T 2l9b_A           33 INMTTPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDAASLLELCPQLSFVTAELLLTNGICKVDDLIPLASR  107 (109)
T ss_dssp             TTTSCHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHTSSCHHHHTTTC--
T ss_pred             CCCCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHHHhCCCCHHHHHHHhcc
Confidence            4568899 9999999999999999999999999999999999999999999999999999999999887766543

>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}

Probab=99.36  E-value=5.3e-13  Score=99.49  Aligned_cols=38  Identities=39%  Similarity=0.730  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHcCCHHHHhcCChHHHHHHHHHHHHHhC
Q 040162          358 EMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ  395 (395)
Q Consensus       358 ~~~~aLl~QVl~Lt~eqI~~LPp~qR~QIl~Lr~ql~~  395 (395)
                      +++++||+|||+||+||||+|||+||++|++||++|.+
T Consensus         7 ~~q~~Li~QVLsLt~eQI~~LPp~qR~qI~~LR~q~~~   44 (49)
T 2j8p_A            7 HEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK   44 (49)
T ss_dssp             HTHHHHHHHHHTSCHHHHHTSCHHHHTHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHhCCHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            55679999999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00