Citrus Sinensis ID: 040168

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MATNTSTEDQRKRTMEALERRFATAKAEALQQVKHGKKRSLNDDEMETPATNSSNIASSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSSRGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRNL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccEEEEEEcccccccccEEEEEEccccEEEEEcccccEEEEEcccEEEEEEEccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHcccHHEEccccEEEcccccccccHHHHHHHHHHHHHccccccccHHHHHHccccccccHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEEEcccEEEEEEcccEEEEEEcccEEEEEEEccEEEEEEccccEEccc
Coil and Loop (DISEMBL)
MATNTSTEDQRKRTMEALERRFATAKAEALQQVKhgkkrslnddemetpatnssniassphvtdrsaantpkslskkgnftfsgYTAFQdleesgltysqlpqSIHENllttnvepssrgstvdnVLHGLFQNGDSAQKYLQgsrsmkidNWILLDnyvqgrnvstgshIKALQIHSKRSRKHMSMKQlkrsgaldlpkdlqkfekykpMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRettetfgmvtpddkfhvvpkKVSVFMFRVDCWKitllgdkltsrnl
Flexible Loop (DISEMBL)
matntstedqrkRTMEALERRFATAKAEalqqvkhgkkrslnddeMETPatnssniassphvtdrsaantpkslskkgnFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSSRGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKqlkrsgaldlpkdlQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKitllgdkltsrnl
Low Complexity Region (SEG)
MATNTSTEDQRKRTMEALERRFATAKAEALQQVKHGKKRSLNDDEMETPATNSSNIASSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSSRGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRNL
Disordered region (IsUnstruct)
*******************************************************************************FTFSGYTAFQDLE**GLTY*************************DNVLHGLFQNGD*AQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKA*******************************FEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGD*******
Disordered Region (DISOPRED)
*************************************************************************************************YSQLPQ*************************************************IL****************************************LDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSR**
Disordered Region (DISEMBL)
*************TMEALERRFATAKAEALQQVKHGKKRSLNDDEMETPATNSSN****************KSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSSRGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIH***************SGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRNL
Disordered Region (DISPRO)
********DQRKRTMEALERRFATAKAEALQQVKH***************************************************AFQDLEESGLTYSQLPQSIHENLLTTNVEPSSRGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNV******K**QIH****RKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATNTSTxxxxxxxxxxxxxxxxxxxxxALQQVKHGKKRSLNDDEMETPATNSSNIASSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSSRGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q5M882	221	Ribonuclease P protein su	yes	no	0.401	0.561	0.351	7e-16
Q5R7B0	220	Ribonuclease P protein su	yes	no	0.404	0.568	0.341	7e-16
Q2KIB9	220	Ribonuclease P protein su	yes	no	0.404	0.568	0.341	8e-16
Q9CR08	221	Ribonuclease P protein su	yes	no	0.420	0.588	0.350	1e-15
O95707	220	Ribonuclease P protein su	yes	no	0.404	0.568	0.341	2e-15
P38336	279	RNases MRP/P 32.9 kDa sub	yes	no	0.352	0.390	0.309	1e-06
Q9P7W9	217	Probable ribonuclease P p	yes	no	0.317	0.451	0.3	3e-06

>sp|Q5M882|RPP29_RAT Ribonuclease P protein subunit p29 OS=Rattus norvegicus GN=Pop4 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 4/128 (3%)

Query: 184 MSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADL 239
           +S KQ +     D+  + Q++  + P+HE+WK YI  L   LK   + Q+ Q  LL ADL
Sbjct: 77  LSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADL 136

Query: 240 HGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITL 299
           HGA I V + K  +  G++GI+++ET   F ++T +D   V+PK+  VF   +D +   +
Sbjct: 137 HGAVISVTKSKCPSYVGVTGILLQETKHVFKIITKEDHLKVIPKQNCVFTIEIDDFISYI 196

Query: 300 LGDKLTSR 307
            G K   R
Sbjct: 197 YGSKFQLR 204

Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. May function with RPP38 to coordinate the nucleolar targeting and/or assembly of RNase P.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 5

>sp|Q5R7B0|RPP29_PONAB Ribonuclease P protein subunit p29 OS=Pongo abelii GN=POP4 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 4/129 (3%)

Query: 184 MSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADL 239
           +S +Q +     D+  + Q++  + P+HE+WK YI  L   LK   + Q+ Q  LL ADL
Sbjct: 76  LSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADL 135

Query: 240 HGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITL 299
           HGA I V + K  +  G++GI+++ET   F ++T +D+  V+PK   VF   +D +   +
Sbjct: 136 HGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVEIDGFISYI 195

Query: 300 LGDKLTSRN 308
            G K   R+
Sbjct: 196 YGSKFQLRS 204

Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. May function with RPP38 to coordinate the nucleolar targeting and/or assembly of RNase P.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q2KIB9|RPP29_BOVIN Ribonuclease P protein subunit p29 OS=Bos taurus GN=POP4 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 4/129 (3%)

Query: 184 MSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADL 239
           +S KQ +     D+  + Q++  + P+HE+WK YI  L   LK   + Q+ Q  LL ADL
Sbjct: 76  LSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADL 135

Query: 240 HGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITL 299
           HGA + V + K  +  G++GI+++ET   F ++T +D+  V+PK   VF   +D +   +
Sbjct: 136 HGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKLNCVFTVEIDGFISYI 195

Query: 300 LGDKLTSRN 308
            G K   R+
Sbjct: 196 YGSKFQLRS 204

Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. May function with RPP38 to coordinate the nucleolar targeting and/or assembly of RNase P.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q9CR08|RPP29_MOUSE Ribonuclease P protein subunit p29 OS=Mus musculus GN=Pop4 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 4/134 (2%)

Query: 178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC- 233
           K+  K +S KQ +     D+  + Q++  + P+HE+WK YI  L   LK   + Q+ Q  
Sbjct: 71  KKKSKGLSAKQRRDMRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAK 130

Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
           LL ADLHGA I V + K  +  G++GI+++ET   F ++T +D   V+PK   VF   +D
Sbjct: 131 LLKADLHGAIISVTKSKCPSYVGVTGILLQETKHVFKIITREDHLKVIPKLNCVFTIEID 190

Query: 294 CWKITLLGDKLTSR 307
            +   + G K   R
Sbjct: 191 DFISYIYGSKFQLR 204

Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. May function with RPP38 to coordinate the nucleolar targeting and/or assembly of RNase P.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|O95707|RPP29_HUMAN Ribonuclease P protein subunit p29 OS=Homo sapiens GN=POP4 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 4/129 (3%)

Query: 184 MSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADL 239
           +S +Q +     D+  + Q++  + P+HE+WK YI  L   LK   + Q+ Q  LL ADL
Sbjct: 76  LSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADL 135

Query: 240 HGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITL 299
           HGA I V + K  +  G++GI+++ET   F ++T +D+  V+PK   VF    D +   +
Sbjct: 136 HGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVETDGFISYI 195

Query: 300 LGDKLTSRN 308
            G K   R+
Sbjct: 196 YGSKFQLRS 204

Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. May function with RPP38 to coordinate the nucleolar targeting and/or assembly of RNase P.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|P38336|POP4_YEAST RNases MRP/P 32.9 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POP4 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 17/126 (13%)

Query: 201 LQKFEKYKPMH-EMWKGYITQLLK-----STGKNQLAQCLLS-ADLHGANIIVAECKTSA 253
           L ++  + PM+ E+W  YI +LL       T    LA   LS AD +GA + V + K   
Sbjct: 133 LPQYVDFVPMYKELWINYIKELLNITKNLKTFNGSLALLKLSMADYNGALLRVTKSKNKT 192

Query: 254 LTGLSGIMIRETTETFGMVTPD---DKFHVVPKKVSVFMFRV-------DCWKITLLGDK 303
           L GL GI+I ++ + F M+      D+   +PKK +VF F +          + ++LGD+
Sbjct: 193 LIGLQGIVIWDSQKFFIMIVKGNIIDEIKCIPKKGTVFQFEIPISDDDDSALRYSILGDR 252

Query: 304 LTSRNL 309
              R++
Sbjct: 253 FKYRSV 258

Required for 5.8S rRNA and tRNA processing; associated with RNase MRP and RNase P.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9P7W9|RNP1_SCHPO Probable ribonuclease P protein subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.01c PE=3 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 2/100 (2%)

Query: 195 LDLPKDLQKFEKYKPMHEMWKGYITQLLK-STGKNQLAQCLLSADLHGANIIVAECKTSA 253
           L++   +  + ++K +H MW  YI +++   TG++ +A+ L  A+  GA + V   K++ 
Sbjct: 84  LNVVPKIADYSQFKHLHSMWCSYILEVIAGCTGESLMAK-LAKAEYQGAYMQVLRSKSTT 142

Query: 254 LTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
             GL GI I E+     ++T +++   VPK+ SV    VD
Sbjct: 143 RVGLEGICIHESKHMLSLITKENRVVRVPKQDSVMKVIVD 182

Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
297741558	306	unnamed protein product [Vitis vinifera]	0.977	0.986	0.623	1e-103
356538807	300	PREDICTED: uncharacterized protein LOC10	0.957	0.986	0.615	1e-102
225439890	300	PREDICTED: uncharacterized protein LOC10	0.957	0.986	0.614	1e-101
224053216	289	predicted protein [Populus trichocarpa]	0.909	0.972	0.599	3e-94
357481161	352	Ribonuclease P protein subunit p29 [Medi	0.944	0.829	0.477	3e-79
255564577	282	expressed protein, putative [Ricinus com	0.792	0.868	0.573	4e-76
297824293	295	ribonuclease P family protein [Arabidops	0.928	0.972	0.501	3e-72
30689290	295	ribonuclease P-like protein [Arabidopsis	0.932	0.976	0.5	3e-71
18406178	296	ribonuclease P-like protein [Arabidopsis	0.928	0.969	0.493	8e-71
449440383	300	PREDICTED: uncharacterized protein LOC10	0.938	0.966	0.466	3e-69

>gi|297741558|emb|CBI32690.3| unnamed protein product [Vitis vinifera]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/311 (62%), Positives = 233/311 (74%), Gaps = 9/311 (2%)

Query: 1   MATNTSTEDQRKRTMEALERRFATAKAEALQQVKH-GKKRSLNDDEMETPATNSSNIASS 59
           MAT T  EDQ+KRT+EALERRFA AKAE LQQ +H  KKR    DE  +P TNS ++ SS
Sbjct: 1   MATGTILEDQKKRTLEALERRFAVAKAELLQQQEHLSKKRFRGVDEKVSPCTNSFSVGSS 60

Query: 60  PHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSS- 118
            H TD S   T  +  KKG+ T       QD+E +G  YSQL Q++HENLL TN + +S 
Sbjct: 61  THPTDSSVTPTLNASLKKGHATS------QDVEANGPAYSQLSQTVHENLLATNAKITSK 114

Query: 119 RGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSK 178
           RGST D +LH L +NGDSA KY+ GSRSMK DNWILLDN VQGR  S G+ I+ L  HSK
Sbjct: 115 RGSTADKILHDLLKNGDSAHKYMMGSRSMKFDNWILLDNVVQGRGAS-GARIRDLLSHSK 173

Query: 179 RSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSAD 238
            SRKH+SMKQ KR G+L+LP++L +++ +KPMH+MWKGY+ QLLK+TGKNQL Q LLSAD
Sbjct: 174 NSRKHISMKQNKRCGSLNLPQELHRYDIFKPMHDMWKGYMMQLLKNTGKNQLVQPLLSAD 233

Query: 239 LHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKIT 298
           LHGA I+V ECK +A  G+SGIMIRET ET G++T DDKF VVPKK SVF+F+ DCWK+T
Sbjct: 234 LHGAIILVVECKIAAFNGVSGIMIRETAETLGIITQDDKFRVVPKKGSVFIFQADCWKVT 293

Query: 299 LLGDKLTSRNL 309
           L GDKLTSRNL
Sbjct: 294 LQGDKLTSRNL 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538807|ref|XP_003537892.1| PREDICTED: uncharacterized protein LOC100802747 [Glycine max]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/304 (61%), Positives = 232/304 (76%), Gaps = 8/304 (2%)

Query: 7   TEDQRKRTMEALERRFATAKAEALQQVKHGKKRSLNDDEMETPATNSSNIASSPHVTDRS 66
            ED RKRT+EALERR A AK E LQ+ K  KK    D ++  PA ++SN   SPH+    
Sbjct: 2   AEDSRKRTLEALERRIAFAKVEVLQKEKKNKKTINEDGKLPIPADSTSN-DPSPHLL--- 57

Query: 67  AANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSS-RGSTVDN 125
             ++    SKKGNF+FSG+T  QD+E+ G  Y+QL   ++ NLLTTN E S+ RG ++D 
Sbjct: 58  --HSSSVSSKKGNFSFSGHTTLQDIED-GPAYAQLSVPVNGNLLTTNEEFSAERGGSIDG 114

Query: 126 VLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMS 185
           +LH L Q GD+A KY+QGSR+MKIDNWILLDNYVQGR +S+GS  +ALQ+HSKRS+KHMS
Sbjct: 115 ILHELLQKGDAAHKYMQGSRNMKIDNWILLDNYVQGRVLSSGSQARALQLHSKRSKKHMS 174

Query: 186 MKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANII 245
           MK+ K+ G+LDLP++ QKF+ +KPMHEMWK YI  LLKSTGKNQLAQCLL ADLHGA I+
Sbjct: 175 MKRHKKDGSLDLPQEFQKFDIFKPMHEMWKDYIMLLLKSTGKNQLAQCLLGADLHGAFIL 234

Query: 246 VAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLT 305
           V ECK +  TG+ GIMIRET E FG++T D+KF VVPKKVSVF+F+VDCWK+TL GDKL 
Sbjct: 235 VVECKITHFTGICGIMIRETAEAFGIITEDNKFRVVPKKVSVFVFQVDCWKVTLHGDKLG 294

Query: 306 SRNL 309
           SR +
Sbjct: 295 SRKV 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439890|ref|XP_002275005.1| PREDICTED: uncharacterized protein LOC100258470 [Vitis vinifera]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/311 (61%), Positives = 229/311 (73%), Gaps = 15/311 (4%)

Query: 1   MATNTSTEDQRKRTMEALERRFATAKAEALQQVKH-GKKRSLNDDEMETPATNSSNIASS 59
           MAT T  EDQ+KRT+EALERRFA AKAE LQQ +H  KKR    DE  +P TNS ++ SS
Sbjct: 1   MATGTILEDQKKRTLEALERRFAVAKAELLQQQEHLSKKRFRGVDEKVSPCTNSFSVGSS 60

Query: 60  PHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSS- 118
            H TD S   T  +  KK            D+E +G  YSQL Q++HENLL TN + +S 
Sbjct: 61  THPTDSSVTPTLNASLKK------------DVEANGPAYSQLSQTVHENLLATNAKITSK 108

Query: 119 RGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSK 178
           RGST D +LH L +NGDSA KY+ GSRSMK DNWILLDN VQGR  S G+ I+ L  HSK
Sbjct: 109 RGSTADKILHDLLKNGDSAHKYMMGSRSMKFDNWILLDNVVQGRGAS-GARIRDLLSHSK 167

Query: 179 RSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSAD 238
            SRKH+SMKQ KR G+L+LP++L +++ +KPMH+MWKGY+ QLLK+TGKNQL Q LLSAD
Sbjct: 168 NSRKHISMKQNKRCGSLNLPQELHRYDIFKPMHDMWKGYMMQLLKNTGKNQLVQPLLSAD 227

Query: 239 LHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKIT 298
           LHGA I+V ECK +A  G+SGIMIRET ET G++T DDKF VVPKK SVF+F+ DCWK+T
Sbjct: 228 LHGAIILVVECKIAAFNGVSGIMIRETAETLGIITQDDKFRVVPKKGSVFIFQADCWKVT 287

Query: 299 LLGDKLTSRNL 309
           L GDKLTSRNL
Sbjct: 288 LQGDKLTSRNL 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053216|ref|XP_002297721.1| predicted protein [Populus trichocarpa] gi|222844979|gb|EEE82526.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 181/302 (59%), Positives = 225/302 (74%), Gaps = 21/302 (6%)

Query: 9   DQRKRTMEALERRFATAKAEALQQVKHGKKRSLNDDEMETPATNSSNIASSPHVTDRSAA 68
           DQRKRTM+ALERRFA AKAE +QQ +  KK  +   E      N++  ++S H  D  A 
Sbjct: 4   DQRKRTMDALERRFAVAKAELVQQQQ--KKHKVTHHEGHRKENNNA-ASTSLHRAD--AP 58

Query: 69  NTPKS-LSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVE-PSSRGSTVDNV 126
            TP S LSKK            D EE+GL YSQLPQ+ HENLLTT V+  S +GS VD +
Sbjct: 59  KTPSSSLSKK------------DPEENGLAYSQLPQAAHENLLTTGVKFESKKGSVVDKI 106

Query: 127 LHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMSM 186
           LH LFQ+GD++QKY+QGSR++KIDNWILLDNYV  +  STGS  +A Q + K SR+HMSM
Sbjct: 107 LHELFQHGDASQKYMQGSRNIKIDNWILLDNYVPSK--STGSQTRASQSNPKHSRRHMSM 164

Query: 187 KQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIV 246
           KQ K+ G  +LP+DLQKF+ YKPMHE+WK Y+ QLLK TG+N+L +CLLSADLHGA I+V
Sbjct: 165 KQHKKLGMFNLPQDLQKFDVYKPMHEIWKDYMMQLLKKTGRNELPKCLLSADLHGAAILV 224

Query: 247 AECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTS 306
           A+CK  + TG+SGIMIRET ETFG++T D K  VVPKK+SVF+F++DCWKIT+LGDKL+S
Sbjct: 225 ADCKIKSFTGISGIMIRETAETFGIITQDSKLKVVPKKLSVFIFQIDCWKITMLGDKLSS 284

Query: 307 RN 308
           RN
Sbjct: 285 RN 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481161|ref|XP_003610866.1| Ribonuclease P protein subunit p29 [Medicago truncatula] gi|355512201|gb|AES93824.1| Ribonuclease P protein subunit p29 [Medicago truncatula]

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 170/356 (47%), Positives = 218/356 (61%), Gaps = 64/356 (17%)

Query: 9   DQRKRTMEALERRFATAKAEALQQVKHGKK-------------RSLNDD-EMETPATNSS 54
           + RKR MEALERR  T     L++ K+ +              +S+N+D +   P  ++S
Sbjct: 4   ESRKRAMEALERRIQTE--HKLKEKKNKRDINHEHILKEKKIIKSINEDVKSPIPPPSTS 61

Query: 55  NIASSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNV 114
           N  S P    R + +TP     KGNF   G    Q+ +E G  Y+QL  +++ENLLTTN 
Sbjct: 62  NDPSLPLC--RPSLDTPN----KGNFGLFGRAISQE-KEDGPEYAQLSVAVNENLLTTNG 114

Query: 115 EPSS-RGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKAL 173
           E SS RG +V  +LH L Q GD+AQKY+QGSRSM+ID++ILLDN+VQGR +S+ S  +AL
Sbjct: 115 EFSSERGGSVSGILHELLQKGDAAQKYMQGSRSMRIDSYILLDNFVQGRALSSSSQTRAL 174

Query: 174 QIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTG------- 226
           Q+HSKRS+KHMSMKQ K+ G++DLPK+  KF+ +KPMH+MWK YI  LLKSTG       
Sbjct: 175 QLHSKRSKKHMSMKQHKKHGSMDLPKEFHKFDIFKPMHDMWKDYIKLLLKSTGYCFCILA 234

Query: 227 ---------------------------------KNQLAQCLLSADLHGANIIVAECKTSA 253
                                             NQLAQCLL ADLHGA I+V ECK + 
Sbjct: 235 IDEFHRFLSSSFSELLFSHGFCNYDNKPVYCSRNNQLAQCLLGADLHGAIILVVECKLTH 294

Query: 254 LTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRNL 309
             G  GIMIRET E FG++T D+KF VVPKK SVF+ +VDCWK TL+GDKL SR +
Sbjct: 295 FIGTGGIMIRETAEAFGIITEDNKFRVVPKKGSVFVLQVDCWKATLIGDKLDSRKV 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564577|ref|XP_002523284.1| expressed protein, putative [Ricinus communis] gi|223537497|gb|EEF39123.1| expressed protein, putative [Ricinus communis]

 Score =  290 bits (743), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 149/260 (57%), Positives = 186/260 (71%), Gaps = 15/260 (5%)

Query: 1   MATNTSTEDQRKRTMEALERRFATAKAEALQQVKHGKKRSLNDDEMET--PATNSSNIAS 58
           M T+T  +DQRKRT EALERRFA AKAE LQQ K  + +  ND+  +     TN  ++AS
Sbjct: 1   MGTDTGCQDQRKRTQEALERRFAVAKAELLQQQKKSQTQRPNDEHRKENYKITNPLSVAS 60

Query: 59  SPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVE-PS 117
             ++       +  S SKK            D+EE+G  YS L   +HENLL TNV+  S
Sbjct: 61  PANLPAAPVTPSVNSSSKK------------DMEENGPAYSLLSHPVHENLLRTNVKFQS 108

Query: 118 SRGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHS 177
           +RGS VD +LH L Q+GDSAQKY+QGS+S K+DNWILLDNYVQGR   T SHI+ALQ HS
Sbjct: 109 NRGSMVDMILHELLQHGDSAQKYMQGSKSKKLDNWILLDNYVQGRGKPTSSHIRALQAHS 168

Query: 178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSA 237
           KRS++HMSMKQ K+ G+ DLP+DLQKF+ +KPMHEMWK Y+ QLLK+TG+NQLAQCL+ A
Sbjct: 169 KRSKRHMSMKQHKKCGSFDLPQDLQKFDAFKPMHEMWKAYMAQLLKNTGRNQLAQCLIGA 228

Query: 238 DLHGANIIVAECKTSALTGL 257
           DLHGANI+VAE K ++ TG+
Sbjct: 229 DLHGANILVAESKIASFTGV 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824293|ref|XP_002880029.1| ribonuclease P family protein [Arabidopsis lyrata subsp. lyrata] gi|297325868|gb|EFH56288.1| ribonuclease P family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/311 (50%), Positives = 214/311 (68%), Gaps = 24/311 (7%)

Query: 1   MATNTSTEDQRKRTMEALERRFATAKAEALQQVKHGKK--RSLNDDEMETPATNSSNIAS 58
           M T T   DQ +  M A+ERR A AKA+ LQQ +  +K  +  +D ++ T  ++ ++   
Sbjct: 1   MGTQTVVHDQARWAMAAMERRLAVAKAQLLQQQQKSEKDKKGTSDVDVSTKESHQADSLP 60

Query: 59  SPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSS 118
           +P  T     + PK                   ++  + Y++L   + ENLL TNV+ SS
Sbjct: 61  TPSKTSIKKVD-PK-------------------DDDSVAYTRLSHPVDENLLATNVKFSS 100

Query: 119 -RGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHS 177
            +G+ VD VLH L ++GDSAQKYLQG++S+K+DN+ILLDN+VQ R+ ++GS  KA Q  S
Sbjct: 101 AKGTIVDKVLHNLLRSGDSAQKYLQGTKSVKLDNYILLDNFVQSRSSASGSK-KASQKDS 159

Query: 178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSA 237
           KRSR  MSMK+LK+SGAL +PKDLQKF+ +KPMH MW+ Y+ +L+K TGK QL+  LLSA
Sbjct: 160 KRSRSRMSMKRLKKSGALHMPKDLQKFDLFKPMHCMWESYMMKLIKVTGKIQLSLTLLSA 219

Query: 238 DLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKI 297
           DLHGA + VAECK ++ TG+ GIM+RET+ETFG++T DDKF VVPKK+SVF+ ++DCWKI
Sbjct: 220 DLHGAFMFVAECKIASFTGVQGIMVRETSETFGIITRDDKFRVVPKKLSVFIIQLDCWKI 279

Query: 298 TLLGDKLTSRN 308
           TL GDK  SR+
Sbjct: 280 TLHGDKFISRD 290

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689290|ref|NP_850389.1| ribonuclease P-like protein [Arabidopsis thaliana] gi|42571209|ref|NP_973678.1| ribonuclease P-like protein [Arabidopsis thaliana] gi|330255131|gb|AEC10225.1| ribonuclease P-like protein [Arabidopsis thaliana] gi|330255132|gb|AEC10226.1| ribonuclease P-like protein [Arabidopsis thaliana]

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 155/310 (50%), Positives = 208/310 (67%), Gaps = 22/310 (7%)

Query: 1   MATNTSTEDQRKRTMEALERRFATAKAEALQQVKH-GKKRSLNDDEMETPATNSSNIASS 59
           M T T   DQ +  M A+ERR A AKA+ LQQ +   +K      +++     S    S 
Sbjct: 1   MGTETVVHDQARWAMAAMERRLAVAKAQLLQQQQQKNEKDKKGTSDVDVSMKESHQADSL 60

Query: 60  PHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSS- 118
           P  +  S    PK                   ++  + Y++L   + ENLL TNV+ SS 
Sbjct: 61  PTPSKTSIKKDPK-------------------DDDSVAYTKLSHPVDENLLATNVKFSSA 101

Query: 119 RGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSK 178
           +G+ VD VLH L ++GDSAQKYLQG++S+K+DN+ILLDN+VQ R+ ++GS  KA Q  SK
Sbjct: 102 KGTIVDKVLHNLLRSGDSAQKYLQGTKSVKLDNYILLDNFVQSRSSASGSK-KASQKDSK 160

Query: 179 RSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSAD 238
           RS+  MSMK+LK+SGAL +PKDLQKF+ +KPMH MW+ Y+ +L+K TGK QL+  LLSAD
Sbjct: 161 RSKSRMSMKRLKKSGALHIPKDLQKFDLFKPMHGMWESYMMKLIKVTGKIQLSLTLLSAD 220

Query: 239 LHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKIT 298
           LHGA + VAECK ++ TG+ GIM+RET+ETFG++T DDKF VVPKK+SVF+ ++DCWKIT
Sbjct: 221 LHGAFMFVAECKIASFTGVQGIMVRETSETFGIITRDDKFRVVPKKLSVFIIQLDCWKIT 280

Query: 299 LLGDKLTSRN 308
           L GDK  SR+
Sbjct: 281 LHGDKFISRD 290

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406178|ref|NP_565993.1| ribonuclease P-like protein [Arabidopsis thaliana] gi|20197152|gb|AAC64308.2| expressed protein [Arabidopsis thaliana] gi|21554179|gb|AAM63258.1| unknown [Arabidopsis thaliana] gi|330255130|gb|AEC10224.1| ribonuclease P-like protein [Arabidopsis thaliana]

 Score =  273 bits (698), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 154/312 (49%), Positives = 212/312 (67%), Gaps = 25/312 (8%)

Query: 1   MATNTSTEDQRKRTMEALERRFATAKAEALQQVK---HGKKRSLNDDEMETPATNSSNIA 57
           M T T   DQ +  M A+ERR A AKA+ LQQ +      K+  +D ++    ++ ++  
Sbjct: 1   MGTETVVHDQARWAMAAMERRLAVAKAQLLQQQQQKNEKDKKGTSDVDVSMKESHQADSL 60

Query: 58  SSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPS 117
            +P  T     + PK                   ++  + Y++L   + ENLL TNV+ S
Sbjct: 61  PTPSKTSIKKVD-PK-------------------DDDSVAYTKLSHPVDENLLATNVKFS 100

Query: 118 S-RGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIH 176
           S +G+ VD VLH L ++GDSAQKYLQG++S+K+DN+ILLDN+VQ R+ ++GS  KA Q  
Sbjct: 101 SAKGTIVDKVLHNLLRSGDSAQKYLQGTKSVKLDNYILLDNFVQSRSSASGSK-KASQKD 159

Query: 177 SKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLS 236
           SKRS+  MSMK+LK+SGAL +PKDLQKF+ +KPMH MW+ Y+ +L+K TGK QL+  LLS
Sbjct: 160 SKRSKSRMSMKRLKKSGALHIPKDLQKFDLFKPMHGMWESYMMKLIKVTGKIQLSLTLLS 219

Query: 237 ADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWK 296
           ADLHGA + VAECK ++ TG+ GIM+RET+ETFG++T DDKF VVPKK+SVF+ ++DCWK
Sbjct: 220 ADLHGAFMFVAECKIASFTGVQGIMVRETSETFGIITRDDKFRVVPKKLSVFIIQLDCWK 279

Query: 297 ITLLGDKLTSRN 308
           ITL GDK  SR+
Sbjct: 280 ITLHGDKFISRD 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440383|ref|XP_004137964.1| PREDICTED: uncharacterized protein LOC101212457 [Cucumis sativus]

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 144/309 (46%), Positives = 201/309 (65%), Gaps = 19/309 (6%)

Query: 1   MATNTSTEDQRKRTMEALERRFATAKAEALQQVK-HGKKRSLNDDEMETPATNSSNIASS 59
           MA N +++D RK  +EALERR A AK E LQQ K    ++S  + E ++   NS+++ S 
Sbjct: 1   MADNKASQDLRKHALEALERRCAAAKVELLQQQKISSTEKSKKEVEGKSALNNSTSVVS- 59

Query: 60  PHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSS- 118
                R+  N+   L  +G         ++D+ ES   Y  L  ++++ L+ T+++ S+ 
Sbjct: 60  -----RNQYNSSIPLPSEGK------PPYKDVNESDPIYFTLSAAVNDKLMATSMDVSNN 108

Query: 119 RGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSK 178
           RG  +D + H L  +G     Y++ S+ +K+D +ILLDN+V  R    GS ++AL+ +SK
Sbjct: 109 RGRVIDRIYHKLKTSG-----YVKRSKELKVDAYILLDNFVPKRAGMIGSRMRALRSNSK 163

Query: 179 RSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSAD 238
           RS++HMSMKQ K+ G LDLP D +KFE + PMH+MWK Y+ Q L + G + LA+ LL AD
Sbjct: 164 RSKRHMSMKQHKKCGTLDLPSDCRKFEIFLPMHDMWKSYMKQRLHNVGPDALARNLLIAD 223

Query: 239 LHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKIT 298
           LHGA I V EC   A TG SG+MIRET ETFG+VT DDKF VVPKK SVF+F+ DCWK+T
Sbjct: 224 LHGAMIRVVECIIPAFTGTSGVMIRETAETFGIVTKDDKFRVVPKKSSVFIFQWDCWKVT 283

Query: 299 LLGDKLTSR 307
           LLGDKL+SR
Sbjct: 284 LLGDKLSSR 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2041021	296	POP4 "similar to yeast POP4" [	0.699	0.729	0.600	1.9e-67
UNIPROTKB|Q2KIB9	220	POP4 "Ribonuclease P protein s	0.588	0.827	0.296	4.6e-18
UNIPROTKB|Q58DW8	182	POP4 "POP4 (Processing of , S.	0.498	0.846	0.310	9.5e-18
RGD|1305955	221	Pop4 "processing of precursor	0.420	0.588	0.350	1.6e-17
UNIPROTKB|F1NGN1	199	POP4 "Uncharacterized protein"	0.569	0.884	0.291	2e-17
UNIPROTKB|F1RNY8	220	POP4 "Uncharacterized protein"	0.436	0.613	0.330	2.5e-17
UNIPROTKB|F1Q2R6	182	POP4 "Uncharacterized protein"	0.423	0.719	0.352	3.2e-17
MGI|MGI:1913411	221	Pop4 "processing of precursor	0.420	0.588	0.350	5.3e-17
ZFIN|ZDB-GENE-050522-505	219	pop4 "processing of precursor	0.423	0.598	0.348	5.3e-17
UNIPROTKB|O95707	220	POP4 "Ribonuclease P protein s	0.423	0.595	0.340	6.7e-17

TAIR|locus:2041021 POP4 "similar to yeast POP4" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 131/218 (60%), Positives = 175/218 (80%)

Query:    92 EESGLTYSQLPQSIHENLLTTNVEPSS-RGSTVDNVLHGLFQNGDSAQKYLQGSRSMKID 150
             ++  + Y++L   + ENLL TNV+ SS +G+ VD VLH L ++GDSAQKYLQG++S+K+D
Sbjct:    75 DDDSVAYTKLSHPVDENLLATNVKFSSAKGTIVDKVLHNLLRSGDSAQKYLQGTKSVKLD 134

Query:   151 NWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPM 210
             N+ILLDN+VQ R+ ++GS  KA Q  SKRS+  MSMK+LK+SGAL +PKDLQKF+ +KPM
Sbjct:   135 NYILLDNFVQSRSSASGSK-KASQKDSKRSKSRMSMKRLKKSGALHIPKDLQKFDLFKPM 193

Query:   211 HEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFG 270
             H MW+ Y+ +L+K TGK QL+  LLSADLHGA + VAECK ++ TG+ GIM+RET+ETFG
Sbjct:   194 HGMWESYMMKLIKVTGKIQLSLTLLSADLHGAFMFVAECKIASFTGVQGIMVRETSETFG 253

Query:   271 MVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRN 308
             ++T DDKF VVPKK+SVF+ ++DCWKITL GDK  SR+
Sbjct:   254 IITRDDKFRVVPKKLSVFIIQLDCWKITLHGDKFISRD 291

GO:0000172 "ribonuclease MRP complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=ISS

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0030677 "ribonuclease P complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IMP

GO:0008033 "tRNA processing" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

UNIPROTKB|Q2KIB9 POP4 "Ribonuclease P protein subunit p29" [Bos taurus (taxid:9913)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 56/189 (29%), Positives = 98/189 (51%)

Query:   125 NVLHGLFQNGDS-AQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKH 183
             +V H   Q  ++  + +L+  RSM   +   L++++Q + V         Q   ++  K 
Sbjct:    18 DVQHSGAQRAEAFVRAFLK--RSMPRMSQQALEDHLQRKAVVLEYFTHRKQKEKRKKSKG 75

Query:   184 MSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADL 239
             +S KQ +     D+  + Q++  + P+HE+WK YI  L   LK   + Q+ Q  LL ADL
Sbjct:    76 LSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADL 135

Query:   240 HGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITL 299
             HGA + V + K  +  G++GI+++ET   F ++T +D+  V+PK   VF   +D +   +
Sbjct:   136 HGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKLNCVFTVEIDGFISYI 195

Query:   300 LGDKLTSRN 308
              G K   R+
Sbjct:   196 YGSKFQLRS 204

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000172 "ribonuclease MRP complex" evidence=IEA

UNIPROTKB|Q58DW8 POP4 "POP4 (Processing of , S. cerevisiae) homolog" [Bos taurus (taxid:9913)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 49/158 (31%), Positives = 84/158 (53%)

Query:   155 LDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMW 214
             L++++Q + V         Q   ++  K +S KQ +     D+  + Q++  + P+HE+W
Sbjct:     9 LEDHLQRKAVVLEYFTHRKQKEKRKKSKGLSAKQRRELRLFDIKPEQQRYSLFLPLHELW 68

Query:   215 KGYITQL---LKSTGKNQLAQC-LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFG 270
             K YI  L   LK   + Q+ Q  LL ADLHGA + V + K  +  G++GI+++ET   F 
Sbjct:    69 KQYIRDLCNGLKPDTQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFK 128

Query:   271 MVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRN 308
             ++T +D+  V+PK   VF   +D +   + G K   R+
Sbjct:   129 IITKEDRLKVIPKLNCVFTVEIDGFISYIYGSKFQLRS 166

GO:0008033 "tRNA processing" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000172 "ribonuclease MRP complex" evidence=IEA

RGD|1305955 Pop4 "processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 47/134 (35%), Positives = 74/134 (55%)

Query:   178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC- 233
             K+  K +S KQ +     D+  + Q++  + P+HE+WK YI  L   LK   + Q+ Q  
Sbjct:    71 KKKSKGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAK 130

Query:   234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
             LL ADLHGA I V + K  +  G++GI+++ET   F ++T +D   V+PK+  VF   +D
Sbjct:   131 LLKADLHGAVISVTKSKCPSYVGVTGILLQETKHVFKIITKEDHLKVIPKQNCVFTIEID 190

Query:   294 CWKITLLGDKLTSR 307
              +   + G K   R
Sbjct:   191 DFISYIYGSKFQLR 204

GO:0000172 "ribonuclease MRP complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

UNIPROTKB|F1NGN1 POP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 53/182 (29%), Positives = 90/182 (49%)

Query:   132 QNGDSAQKYLQG--SRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKQL 189
             Q  + A+ ++     RSM       + + +  + V    H +  +   +R  K  + KQ 
Sbjct:     1 QGSEEAKAFVSAFLKRSMPQKKDEAIQDVLTRKAVVLEHHCRRRKQPKRRKTKTFTAKQR 60

Query:   190 KRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADLHGANII 245
             +     ++  + Q++E + P+HE+WK YI  L   LK   + Q+ Q  LL ADLHGA + 
Sbjct:    61 RELRLFEIEPEQQRYELFLPLHELWKQYIRDLCYGLKPDAQPQMVQSKLLKADLHGAIVT 120

Query:   246 VAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLT 305
             V + K  +  G++GI+++E    F ++T D+K  VVPK  +VF    D +   + G K  
Sbjct:   121 VTKSKCPSYVGITGIILQEFKHVFKIITKDNKLKVVPKMNNVFSLETDGFISYIYGSKFQ 180

Query:   306 SR 307
              R
Sbjct:   181 FR 182

GO:0000172 "ribonuclease MRP complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

UNIPROTKB|F1RNY8 POP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 46/139 (33%), Positives = 76/139 (54%)

Query:   174 QIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQL 230
             Q   K+  + +S KQ +     D+  + Q++  + P+HE+WK YI  L   LK   + Q+
Sbjct:    66 QKEKKKKSRGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQM 125

Query:   231 AQC-LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFM 289
              Q  LL ADLHGA + V + K  +  G++GI+++ET   F ++T +D+  V+PK   VF 
Sbjct:   126 IQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKLNCVFT 185

Query:   290 FRVDCWKITLLGDKLTSRN 308
               +D +   + G K   R+
Sbjct:   186 VEIDGFISYIYGSKFQLRS 204

GO:0008033 "tRNA processing" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000172 "ribonuclease MRP complex" evidence=IEA

UNIPROTKB|F1Q2R6 POP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 48/136 (35%), Positives = 76/136 (55%)

Query:   178 KRSR-KHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC 233
             KR R K +S +Q +     D+  + Q++  + P+HE+WK YI  L   LK   + Q+ Q 
Sbjct:    31 KRKRSKGLSARQRRELHLFDITAEQQRYNLFLPLHELWKQYIRDLCGGLKPDTQPQMIQA 90

Query:   234 -LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRV 292
              LL ADLHGA I V + K  +  G++GI+++ET   F ++T +D+  V+PK   VF   +
Sbjct:    91 KLLKADLHGALISVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKLNCVFTVEI 150

Query:   293 DCWKITLLGDKLTSRN 308
             D +   + G K   R+
Sbjct:   151 DGFISYIYGSKFQLRS 166

GO:0008033 "tRNA processing" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000172 "ribonuclease MRP complex" evidence=IEA

MGI|MGI:1913411 Pop4 "processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 47/134 (35%), Positives = 73/134 (54%)

Query:   178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC- 233
             K+  K +S KQ +     D+  + Q++  + P+HE+WK YI  L   LK   + Q+ Q  
Sbjct:    71 KKKSKGLSAKQRRDMRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAK 130

Query:   234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
             LL ADLHGA I V + K  +  G++GI+++ET   F ++T +D   V+PK   VF   +D
Sbjct:   131 LLKADLHGAIISVTKSKCPSYVGVTGILLQETKHVFKIITREDHLKVIPKLNCVFTIEID 190

Query:   294 CWKITLLGDKLTSR 307
              +   + G K   R
Sbjct:   191 DFISYIYGSKFQLR 204

GO:0000172 "ribonuclease MRP complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030677 "ribonuclease P complex" evidence=IEA

ZFIN|ZDB-GENE-050522-505 pop4 "processing of precursor 4, ribonuclease P/MRP subunit" [Danio rerio (taxid:7955)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 47/135 (34%), Positives = 71/135 (52%)

Query:   178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKST--GKNQ--LAQC 233
             K   K ++ K+ +R     L  + QK+E + P+HE+WK YI  L      G N   + Q 
Sbjct:    69 KVKAKGLNAKERRRLQIFQLKPEHQKYELFLPLHELWKSYIEDLCNGLKPGSNPQVIQQK 128

Query:   234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
             LL AD HGA + V   K  +  GL+GI+++E    F ++T +DK  V+PK+ SVF   V 
Sbjct:   129 LLKADFHGAILTVVRSKCPSYVGLTGILVQELKHIFKLITKEDKLKVIPKRNSVFSVEVG 188

Query:   294 CWKITLLGDKLTSRN 308
              +   + G K   R+
Sbjct:   189 GFVSHIYGSKFELRS 203

GO:0030677 "ribonuclease P complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0000172 "ribonuclease MRP complex" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

UNIPROTKB|O95707 POP4 "Ribonuclease P protein subunit p29" [Homo sapiens (taxid:9606)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 46/135 (34%), Positives = 74/135 (54%)

Query:   178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC- 233
             K+  K +S +Q +     D+  + Q++  + P+HE+WK YI  L   LK   + Q+ Q  
Sbjct:    70 KKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAK 129

Query:   234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
             LL ADLHGA I V + K  +  G++GI+++ET   F ++T +D+  V+PK   VF    D
Sbjct:   130 LLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVETD 189

Query:   294 CWKITLLGDKLTSRN 308
              +   + G K   R+
Sbjct:   190 GFISYIYGSKFQLRS 204

GO:0000172 "ribonuclease MRP complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26	0.691
3rd Layer	3.1.26.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.6928.1 hypothetical protein (284 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
pfam01868	89	pfam01868, UPF0086, Domain of unknown function UPF	1e-15
smart00538	92	smart00538, POP4, A domain found in a protein subu	1e-14
PRK03879	96	PRK03879, PRK03879, ribonuclease P protein compone	2e-05

>gnl|CDD|202017 pfam01868, UPF0086, Domain of unknown function UPF0086

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 223 KSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVP 282
             T  N     +L  +L G  + V      +L G+ G ++ ET  T  + T   +   +P
Sbjct: 1   MITPSN-----ILRHELIGLEVEVVRSTNPSLVGIKGRVVDETRNTLVIETEKGREKTIP 55

Query: 283 KKVSVFMFRV-DCWKITLLGDKLTSR 307
           K  SVF F + D  K+ + G  L  R
Sbjct: 56  KDGSVFRFELPDGEKVEIDGSLLVGR 81

This family consists of several archaeal and eukaryotic proteins. The archaeal proteins are found to be expressed within ribosomal operons and several of the sequences are described as ribonuclease P protein subunit p29 proteins. Length = 89

>gnl|CDD|197780 smart00538, POP4, A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRV- 292
           LL  +L G  + V   K  +L G+ GI++ ET  T  + T + +   VPK  +VF F + 
Sbjct: 6   LLRHELIGLKVRVVASKNPSLVGIEGIVVDETRNTLVIETKEGRVKTVPKDGAVFEFELP 65

Query: 293 DCWKITLLGDKLTSR 307
              K+ + GD L  R
Sbjct: 66  GGEKVRIDGDLLVGR 80

Length = 92

>gnl|CDD|235169 PRK03879, PRK03879, ribonuclease P protein component 1; Validated

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 230 LAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFM 289
               +L  +L G  + V +    +L G+ G ++ ET  T  + T D K  +VPK  + F 
Sbjct: 4   TPSNILRHELIGLKVEVVDSTNPSLVGIKGRVVDETRNTLVIET-DGKEWMVPKDGATFE 62

Query: 290 FRVDCW---KITLLGDKLTSR 307
           F +      K+ + G  L  R
Sbjct: 63  FELGRDDVVKVKVDGRLLVGR 83

Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
KOG4046	224	consensus RNase MRP and P, subunit POP4/p29 [RNA p	100.0
PF01868	89	UPF0086: Domain of unknown function UPF0086; Inter	99.94
smart00538	92	POP4 A domain found in a protein subunit of human	99.94
PRK03879	96	ribonuclease P protein component 1; Validated	99.93
COG1588	95	POP4 RNase P/RNase MRP subunit p29 [Translation, r	99.76

>KOG4046 consensus RNase MRP and P, subunit POP4/p29 [RNA processing and modification]

Probab=100.00  E-value=3.2e-41  Score=306.18  Aligned_cols=189  Identities=35%  Similarity=0.569  Sum_probs=163.1

Q ss_pred             CCCCCCCCccccccCCCCCcccccCCccccccccccccccccCccccccCccccccccccCcccCCCCchHHHHHHHHhh
Q 040168           53 SSNIASSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSSRGSTVDNVLHGLFQ  132 (309)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~l~~~~~~~~~~~~~v~~~l~~l~~  132 (309)
                      .+++.+++.+.|+.+.++|....               +..+-.+|..|.+++.+|++.+|++++.+..+          
T Consensus        15 ~~~dv~~~~~qq~~s~~~~~~~~---------------~~~d~i~~~~l~~~~d~~~~~kn~k~h~rk~~----------   69 (224)
T KOG4046|consen   15 SDKDVSISESQQAKSLPNPKVKP---------------KDPDSIAYLKLLHPVDENLLLKNVKQHSRKET----------   69 (224)
T ss_pred             ccccccccccccccccCChhhcc---------------CCcchhhhhhhccchhHHHHHHhHHHHHHHHH----------
Confidence            35677767788888887652222               23367789999999999999999998833322          


Q ss_pred             CCChhhHhhhccccccccceeehhhhhccccccchhhhHHHHHhcccccCcCCHHHHHHCCCCCCCccccChhchHhHHH
Q 040168          133 NGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHE  212 (309)
Q Consensus       133 ~~~~a~k~~~g~~~~k~dk~i~Ldnyi~~~~~~~~a~aK~i~~~sK~s~k~LS~r~~kklGl~~lp~~~~kYe~f~pLhe  212 (309)
                                                                 .++++.+.+|.|+++++|+++||+.+++|++|.|||+
T Consensus        70 -------------------------------------------~~~kk~k~lssRe~~~l~l~~ip~k~~ky~~f~Pmh~  106 (224)
T KOG4046|consen   70 -------------------------------------------ASKKKSKTLSSREYKKLGLNTIPKKLQKYSDFKPMHE  106 (224)
T ss_pred             -------------------------------------------HHhhhhccchHHHHHHhcCCCCcHHHHhHHhhchHHH
Confidence                                                       2235556789999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCc--hhHhhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEE
Q 040168          213 MWKGYITQLLKSTGK--NQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMF  290 (309)
Q Consensus       213 LW~~Yi~eLL~~~~~--~~~~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f  290 (309)
                      ||++||+|+|+.+..  .....+|++||||||.+.|..|+||.+||+.||||+||+++|.|+|.+|++++|||++|||.|
T Consensus       107 lW~~Yirell~~~~~~~q~~~a~LlkADyhGA~m~V~~Sk~~t~vgl~GI~l~etkh~fklitke~ri~~IPK~~cVf~~  186 (224)
T KOG4046|consen  107 LWKSYIRELLKGTKGDPQLSLAKLLKADYHGALMFVTKSKNPTLVGLLGIVLLETKHFFKLITKENRIVVIPKKECVFAF  186 (224)
T ss_pred             HHHHHHHHHHhccCCChHHHHHHHHhhhhccceEEEecccCCceeceeeEEeeecchhhhhhccCCeEEEEeccCcEEEE
Confidence            999999999998765  334567999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECC--EEEEEEcCccccCCC
Q 040168          291 RVDC--WKITLLGDKLTSRNL  309 (309)
Q Consensus       291 ~ld~--~~vtI~G~~L~~RP~  309 (309)
                      .+++  +.|+|+|++|.+||.
T Consensus       187 ~~g~~~~~f~i~g~~f~~R~~  207 (224)
T KOG4046|consen  187 ITGVQGLMFSIFGDHFGIRPA  207 (224)
T ss_pred             EeCCccEEEEEecccccceeh
Confidence            9988  999999999999984

>PF01868 UPF0086: Domain of unknown function UPF0086; InterPro: IPR002730 The p29 subunit (also known as Rpp29 or Pop4) of the related ribonucleoproteins ribonuclease (RNase) P and RNase MRP can be found in both eukaryotes and arachea []

Probab=99.94  E-value=3e-27  Score=188.97  Aligned_cols=78  Identities=42%  Similarity=0.628  Sum_probs=72.3

Q ss_pred             hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEECCEE-EEEEcCccccCC
Q 040168          231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWK-ITLLGDKLTSRN  308 (309)
Q Consensus       231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld~~~-vtI~G~~L~~RP  308 (309)
                      .++|++||||||.++|++|+||++||++||||+||+|||.|+|++|++++|||++|+|.|++++.. |+|+|++|.+||
T Consensus         4 ~~~l~~~dl~G~~i~V~~s~~pslvG~~GiVV~ETknt~~I~t~~~~~~~IpK~~~vF~~~~~~~~~~~i~G~~l~~rp   82 (89)
T PF01868_consen    4 PQNLLKADLIGAKIEVVRSKNPSLVGIEGIVVDETKNTFVIVTEDGKVKTIPKAGSVFEFELPGGSKVTIYGSRLVGRP   82 (89)
T ss_dssp             HHHHTTS--TT-EEEEEEESSCCCTTEEEEEEEEETTEEEEEETTEEEEEEESTTEEEEEEETTTEEEEEEGGGCSS-H
T ss_pred             hhhhhhhhhcCCEEEEEEcCCCCccCCEEEEEEcccceEEEEecCCcEEEEecCCEEEEEEeCCCcEEEEEChhhccCh
Confidence            578999999999999999999999999999999999999999999999999999999999999988 999999999998

The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex []. Rpp29 (3.1.26.5 from EC) catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits. RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA (approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor (approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits Mth Rpp29, a homologue of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme []. In Saccharomyces cerevisiae (Baker's yeast), RNase P consists of 9 protein subunits (Pop1, Pop3-8, Rpr2 and Rpp1), while in humans there are 10 subunits (Rpp14, 20, 21, 25, 29, 30, 38, 40, hPop1, 5). RNase MRP (mitochondrial RNA processing) is an rRNA processing enzyme that cleaves a specific site within precursor rRNA to generate the mature 5'-end of 5.8S rRNA []. RNase MRP also cleaves primers for mitochondrial DNA replication and CLB2 mRNA. In yeast, RNase MRP possesses one putatively catalytic RNA and at least 9 protein subunits and is highly related to RNase P (Pop1, Pop3-Pop8, Rpp1, Snm1 and Rmp1).; GO: 0003723 RNA binding, 0004540 ribonuclease activity, 0006364 rRNA processing, 0006379 mRNA cleavage, 0008033 tRNA processing, 0000172 ribonuclease MRP complex, 0030677 ribonuclease P complex; PDB: 1V76_B 2ZAE_C 1OQK_A 2KI7_A 1TSF_A 1TS9_A 1PC0_A.

>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins

Probab=99.94  E-value=5.3e-27  Score=189.11  Aligned_cols=78  Identities=31%  Similarity=0.508  Sum_probs=76.1

Q ss_pred             hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEECC-EEEEEEcCccccCC
Q 040168          231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDC-WKITLLGDKLTSRN  308 (309)
Q Consensus       231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld~-~~vtI~G~~L~~RP  308 (309)
                      .++|++||||||.++|++|+||++||++||||+||+|||.|+|++|++++|||++|+|.|++++ ..|+|+|++|.+||
T Consensus         3 ~~~l~~~el~G~~v~Vv~s~~ps~vGi~GiVv~ET~nt~~I~t~~~~~~~IpK~~~vF~f~l~~~~~~~i~G~~l~~rp   81 (92)
T smart00538        3 PRKLLRHELIGLKVRVVASKNPSLVGIEGIVVDETRNTLKIETKEGRVKTVPKDGAVFEFELPGGEIVRIDGDRLVGRP   81 (92)
T ss_pred             hhhhhhhhhcCCEEEEEEcCCCCccCcEEEEEEeeeeEEEEEeCCCcEEEEECCCeEEEEEECCCeEEEEECceeeeCc
Confidence            4689999999999999999999999999999999999999999999999999999999999987 99999999999999

>PRK03879 ribonuclease P protein component 1; Validated

Probab=99.93  E-value=1.5e-25  Score=182.27  Aligned_cols=77  Identities=29%  Similarity=0.456  Sum_probs=74.1

Q ss_pred             hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEE---CCEEEEEEcCccccC
Q 040168          231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRV---DCWKITLLGDKLTSR  307 (309)
Q Consensus       231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~l---d~~~vtI~G~~L~~R  307 (309)
                      .++|++||||||.++|++|+||++||++||||+||+|||.|+ .++++++|||++|+|.|++   ++..|+|+|++|.+|
T Consensus         5 ~~nl~~~eliGl~v~Vv~S~npslvGi~GiVv~ETknt~~I~-~~~~~~~VPK~~~iF~f~~~~~~~~~v~I~G~~l~~R   83 (96)
T PRK03879          5 PSNILRHELIGLKVEVVDSTNPSLVGIKGRVVDETRNTLVIE-TDGKEWMVPKDGATFEFELGRDDVVKVKVDGRLLVGR   83 (96)
T ss_pred             HHHHHHHHhcCCEEEEEEcCCCCcccceEEEEEeceeEEEEE-cCCcEEEEeCCCeEEEEEEcCCCCeEEEEECceeecC
Confidence            468999999999999999999999999999999999999999 6788999999999999999   889999999999999


Q ss_pred             C
Q 040168          308 N  308 (309)
Q Consensus       308 P  308 (309)
                      |
T Consensus        84 P   84 (96)
T PRK03879         84 P   84 (96)
T ss_pred             c
Confidence            8

>COG1588 POP4 RNase P/RNase MRP subunit p29 [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=1e-18  Score=142.07  Aligned_cols=77  Identities=26%  Similarity=0.373  Sum_probs=73.1

Q ss_pred             hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEEC-CEEEEEEcCccccCC
Q 040168          231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD-CWKITLLGDKLTSRN  308 (309)
Q Consensus       231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld-~~~vtI~G~~L~~RP  308 (309)
                      ..+|+.+||+|..++|++|.||+++|++|-||+||+|||.|.+.+ +.++|||.+++|+|+.+ |..|.|.|+.|.+||
T Consensus         7 p~~i~~hEliGl~vrVv~s~~~s~vGI~G~VVdETkNtLvi~t~~-~~~~VpK~~~vfef~~~~G~~vkVdG~lL~~rP   84 (95)
T COG1588           7 PRNIIRHELIGLEVRVVRSTNPSYVGIEGRVVDETKNTLVIDTGS-REKVVPKDGAVFEFEGPDGEKVKVDGRLLLGRP   84 (95)
T ss_pred             CCCcChHHhcCcEEEEEecCCCCccceeEEEEeeeccEEEEECCC-ceEEEecCcEEEEEEcCCCcEEEEcchhhhcCH
Confidence            357899999999999999999999999999999999999999976 88899999999999996 899999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
1oqk_A	97	Conserved protein MTH11; OB fold, archaeal RNAse P	1e-21
1ts9_A	102	Ribonuclease P protein component 1; anti-parallel,	2e-21
1v76_A	96	RNAse P protein PH1771P; RNA binding protein, arch	2e-18
2zae_A	127	Ribonuclease P protein component 1; ribonuclease P	3e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1oqk_A Conserved protein MTH11; OB fold, archaeal RNAse P protein subunit, hydrolase; NMR {Methanothermobacterthermautotrophicus} SCOP: b.137.1.1 Length = 97

 Score = 86.6 bits (215), Expect = 1e-21
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 232 QCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFR 291
           + +   +L G ++ +A      + G+SG ++ ET  T  +   D +   VPK ++VF FR
Sbjct: 9   RNIFRHELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMDDGREITVPKGIAVFHFR 68

Query: 292 V-DCWKITLLGDKLTSR 307
                 + + G  L +R
Sbjct: 69  TPQGELVEIDGRALVAR 85

>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A Length = 102

 Score = 85.9 bits (213), Expect = 2e-21
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
           L++ D  G  + V E    +  G+ G ++ ET  T  ++T +    VV K+   F     
Sbjct: 10  LIARDWIGLMVEVVESPNHSEVGIKGEVVDETQNTLKIMT-EKGLKVVAKRGRTFRVWYK 68

Query: 294 CWKITLLGDKLTSR 307
              + + GD +  R
Sbjct: 69  GKIMRIKGDLINFR 82

>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1 Length = 96

 Score = 77.8 bits (192), Expect = 2e-18
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 232 QCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFR 291
           + ++  +L G  + +      A  G+ G +I ET     +    D+   VPK VS+F F 
Sbjct: 10  RNIIWHELIGLRVRIVGSTHPAFVGIEGYVIDETRNMLVIAG--DRIWKVPKDVSIFEFE 67

Query: 292 V-DCWKITLLGDKLTSR 307
             D  KI + G++L  R
Sbjct: 68  ADDGTKIKIPGERLVGR 84

>2zae_A Ribonuclease P protein component 1; ribonuclease P protein subunits, hetero dimer, hydrolase, TR processing; 2.21A {Pyrococcus horikoshii} PDB: 2ki7_A Length = 127

 Score = 78.3 bits (193), Expect = 3e-18
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 206 KYKPMHEMWKGYITQLLKSTGKN--QLAQCLLSADLHGANIIVAECKTSALTGLSGIMIR 263
             +      +      +           + ++  +L G  + +      A  G+ G +I 
Sbjct: 13  TRRSQGSYQEIIGRTWIFRGAHRGRVTRRNIIWHELIGLRVRIVGSTHPAFVGIEGYVID 72

Query: 264 ETTETFGMVTPDDKFHVVPKKVSVFMFRV-DCWKITLLGDKLTSR 307
           ET     +    D+   VPK VS+F F   D  KI + G++L  R
Sbjct: 73  ETRNMLVIAG--DRIWKVPKDVSIFEFEADDGTKIKIPGERLVGR 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 52/366 (14%), Positives = 96/366 (26%), Gaps = 149/366 (40%)

Query: 11  RKRTMEALERRFATAKAEALQQVK-------HGK----KRSLNDDEMETPATNSSNIASS 59
           R +    L         +AL +++        G     K  +                  
Sbjct: 133 RLQPYLKLR--------QALLELRPAKNVLIDGVLGSGKTWV------------------ 166

Query: 60  PHVTDRSAANTPKSLSKKGNFTFSGY--TAFQDLEESGLTYSQLPQSIHENL--LTTNVE 115
                  A +   S   +    F  +            L     P+++ E L  L   ++
Sbjct: 167 -------ALDVCLSYKVQCKMDFKIFWLN---------LKNCNSPETVLEMLQKLLYQID 210

Query: 116 PS--SRGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNW----ILLDNYVQGRNVSTGSH 169
           P+  SR     N    +     S Q  L   R +K   +    ++L N      V     
Sbjct: 211 PNWTSRSDHSSN----IKLRIHSIQAEL--RRLLKSKPYENCLLVLLN------VQNAKA 258

Query: 170 IKALQIHSK-----R-----------SRKHMSMKQLKRS----------------GALDL 197
             A  +  K     R           +  H+S+     +                   DL
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 198 PKDLQKF---------EKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAE 248
           P+++            E  +     W  +     K    ++L             II   
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNW-----KHVNCDKL-----------TTII--- 359

Query: 249 CKTSALTGLSGIMIRETTETFGMVTPDDKFHV-VPKKV-SVF---MFRVDCWKITLLGDK 303
            ++S L  L     R+  +    V P       +P  + S+    + + D   +    +K
Sbjct: 360 -ESS-LNVLEPAEYRKMFDRLS-VFPPS---AHIPTILLSLIWFDVIKSDVMVVV---NK 410

Query: 304 LTSRNL 309
           L   +L
Sbjct: 411 LHKYSL 416

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 27/195 (13%), Positives = 57/195 (29%), Gaps = 61/195 (31%)

Query: 72  KSLSKKGN--FTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSSRGSTVDNVLHG 129
            SL +K     T S  + + +L+        L    H +++              N+   
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSIVDH-----------YNIPKT 458

Query: 130 LFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRS--------- 180
              +               +D +    +++       G H+K ++   + +         
Sbjct: 459 FDSDDLIPPY---------LDQYFY--SHI-------GHHLKNIEHPERMTLFRMVFLDF 500

Query: 181 ----RK--HMSMKQLKRSGALDLPKDLQKFEKY----KPMHEMWKGYITQLLKSTGKN-- 228
               +K  H S         L+  + L+ ++ Y     P +E     I   L    +N  
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 229 -----QLAQCLLSAD 238
                 L +  L A+
Sbjct: 561 CSKYTDLLRIALMAE 575

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 40/293 (13%), Positives = 90/293 (30%), Gaps = 100/293 (34%)

Query: 90  DLEESGLTYSQ---LP---QSIHENLLTTNVEPSSRG----STVDNVLHG---------L 130
           D E     Y     L     +  +N    +V+   +       +D+++           L
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 131 F-----QNGDSAQKYLQGSRSMKID-NWIL-------------LDNYVQGRNVSTGSHIK 171
           F     +  +  QK+++    ++I+  +++                Y++ R+     +  
Sbjct: 68  FWTLLSKQEEMVQKFVEEV--LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 172 ALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLA 231
             + +  R + ++ ++Q     AL    +L+   K   +  +  G        +GK  +A
Sbjct: 126 FAKYNVSRLQPYLKLRQ-----AL---LELRP-AKNVLIDGV-LG--------SGKTWVA 167

Query: 232 -QCLLSADLHGAN------IIVAECKTSA-----LTGL-SGIMIRETTETFGMVTPDDKF 278
               LS  +          + +  C +       L  L   I    T+ +        + 
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 279 HVVPKKVSVFM-----------------------FRVDCWKITLLGDKLTSRN 308
           H +  ++   +                       F + C KI L    LT+R 
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KI-L----LTTRF 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
1oqk_A	97	Conserved protein MTH11; OB fold, archaeal RNAse P	99.95
1ts9_A	102	Ribonuclease P protein component 1; anti-parallel,	99.94
2zae_A	127	Ribonuclease P protein component 1; ribonuclease P	99.94
1v76_A	96	RNAse P protein PH1771P; RNA binding protein, arch	99.94

>1oqk_A Conserved protein MTH11; OB fold, archaeal RNAse P protein subunit, hydrolase; NMR {Methanothermobacterthermautotrophicus} SCOP: b.137.1.1

Probab=99.95  E-value=7.3e-28  Score=194.68  Aligned_cols=79  Identities=25%  Similarity=0.405  Sum_probs=72.6

Q ss_pred             hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEEC-CEEEEEEcCccccCCC
Q 040168          231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD-CWKITLLGDKLTSRNL  309 (309)
Q Consensus       231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld-~~~vtI~G~~L~~RP~  309 (309)
                      .++|++||||||.|+|++|+||++||++||||+||+|||.|+|++|++++|||++|+|.|+++ |..|+|+|++|.+||-
T Consensus         8 ~~~l~~~dl~G~~v~Vv~S~~pslvGi~GiVV~ET~ntf~I~t~~~~~k~VPK~~~vF~f~~~dg~~~~i~G~~l~~Rp~   87 (97)
T 1oqk_A            8 PRNIFRHELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMDDGREITVPKGIAVFHFRTPQGELVEIDGRALVARPE   87 (97)
T ss_dssp             -----CCCCSSCEEEEEECSSTTTTTCEEECCEEETTEEEEEETTTEEEEEECTTCEEEEEETTTEEEEECSSSCCCCST
T ss_pred             HHHhhHHHhcCCEEEEEEcCCCCccCcEEEEEEcccceEEEEcCCCcEEEEECCCEEEEEEECCCcEEEEECceeccChH
Confidence            468999999999999999999999999999999999999999999999999999999999998 8999999999999993

>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A

Probab=99.94  E-value=2.3e-27  Score=193.57  Aligned_cols=78  Identities=23%  Similarity=0.315  Sum_probs=76.1

Q ss_pred             HhhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEECCEEEEEEcCccccCC
Q 040168          230 LAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRN  308 (309)
Q Consensus       230 ~~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld~~~vtI~G~~L~~RP  308 (309)
                      ..++|++||||||.|+|++|+||++||++||||+||+|||.|+| +|++++|||++|+|.|++++..|+|+|++|.+||
T Consensus         6 ~~~~L~~adl~G~~v~Vv~S~~pslVGi~GiVV~ETkntf~I~t-~~~~k~VPK~~~vF~f~l~~~~~~I~G~~l~~Rp   83 (102)
T 1ts9_A            6 QGVELIARDWIGLMVEVVESPNHSEVGIKGEVVDETQNTLKIMT-EKGLKVVAKRGRTFRVWYKGKIMRIKGDLINFRP   83 (102)
T ss_dssp             HHHHHHHSCCTTCEEEEEECSSGGGTTCEEEEEEECSSEEEEEE-SSSEEEEECTTCEEEEEETTEEEEEEGGGTCSCH
T ss_pred             hhhHHhhhhhcCCEEEEEEcCCCCccCcEEEEEEeccceEEEEe-CCcEEEEECCCEEEEEEECCEEEEEECceeccCh
Confidence            46799999999999999999999999999999999999999999 8999999999999999999999999999999998

>2zae_A Ribonuclease P protein component 1; ribonuclease P protein subunits, hetero dimer, hydrolase, TR processing; 2.21A {Pyrococcus horikoshii} PDB: 2ki7_A

Probab=99.94  E-value=5.8e-28  Score=203.98  Aligned_cols=100  Identities=23%  Similarity=0.390  Sum_probs=88.1

Q ss_pred             cccChhchHhHHHHHHHHHHHHhccCCchhHhhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceE
Q 040168          200 DLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFH  279 (309)
Q Consensus       200 ~~~kYe~f~pLheLW~~Yi~eLL~~~~~~~~~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk  279 (309)
                      .+++|+.+  ++.+|..|-...=.     -..++|++||||||.|+|++|+||++||++||||+||+|||.|+|  |+++
T Consensus        16 ~~~~~~~~--~~~~w~~~~~~~~~-----~t~~~L~~aDl~Ga~v~Vv~S~~pslVGi~GiVV~ETknTf~I~t--~~~k   86 (127)
T 2zae_A           16 SQGSYQEI--IGRTWIFRGAHRGR-----VTRRNIIWHELIGLRVRIVGSTHPAFVGIEGYVIDETRNMLVIAG--DRIW   86 (127)
T ss_dssp             --CTTGGG--TTCGGGGTTTCCSC-----CCTTTTTTSCCTTCEEEEEEESSGGGTTCEEEEEEEETTEEEEES--SSEE
T ss_pred             CCCchhhh--hhhhhhhhhccccc-----cCHHHHHHHHhcCCEEEEEEcCCCCccCcEEEEEEcccceEEEEc--CCEE
Confidence            45689998  59999987332212     125689999999999999999999999999999999999999999  6999


Q ss_pred             EeeecceEEEEEEC-CEEEEEEcCccccCC
Q 040168          280 VVPKKVSVFMFRVD-CWKITLLGDKLTSRN  308 (309)
Q Consensus       280 ~IPK~gsVF~f~ld-~~~vtI~G~~L~~RP  308 (309)
                      +|||++|+|.|+++ +..|+|+|++|.+||
T Consensus        87 ~VPK~~~vF~f~l~dg~~v~I~G~~l~~RP  116 (127)
T 2zae_A           87 KVPKDVSIFEFEADDGTKIKIPGERLVGRP  116 (127)
T ss_dssp             EEESTTEEEEEECTTSCEEEEEGGGGCSCT
T ss_pred             EEECCCeEEEEEeCCCeEEEEECceeccCH
Confidence            99999999999998 899999999999999

>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1

Probab=99.94  E-value=6e-27  Score=189.12  Aligned_cols=76  Identities=29%  Similarity=0.504  Sum_probs=73.9

Q ss_pred             hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEEC-CEEEEEEcCccccCC
Q 040168          231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD-CWKITLLGDKLTSRN  308 (309)
Q Consensus       231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld-~~~vtI~G~~L~~RP  308 (309)
                      .++|++||||||.|+|++|+||++||++||||+||+|||.|+|  |++++|||++|+|.|+++ +..|+|+|++|.+||
T Consensus         9 ~~~l~~~dl~G~~v~Vv~S~~pslVGi~GiVV~ET~ntf~I~t--~~~~~VPK~~~vF~f~~~~~~~v~i~G~~l~~Rp   85 (96)
T 1v76_A            9 RRNIIWHELIGLRVRIVGSTHPAFVGIEGYVIDETRNMLVIAG--DRIWKVPKDVSIFEFEADDGTKIKIPGERLVGRP   85 (96)
T ss_dssp             TTGGGTSCCTTCEEEEEEESSGGGTTCEEEEEEECSSEEEEES--SSEEEEESTTEEEEEECTTSCEEEEEGGGGCSCH
T ss_pred             HHHhhhhhhcCCEEEEEEcCCCCccCcEEEEEEeccceEEEEc--CCEEEEECCCEEEEEEECCCcEEEEECceeccCh
Confidence            5799999999999999999999999999999999999999999  699999999999999998 899999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d1ts9a_	98	b.137.1.1 (A:) Hypothetical protein AF1917 {Archae	2e-21
d1oqka_	78	b.137.1.1 (A:) Hypothetical protein MTH11 {Archaeo	8e-21
d1v76a_	92	b.137.1.1 (A:) Hypothetical protein PH1771 {Archae	2e-19

>d1ts9a_ b.137.1.1 (A:) Hypothetical protein AF1917 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 98

class: All beta proteins
fold: Rof/RNase P subunit-like
superfamily: Rof/RNase P subunit-like
family: RNase P subunit p29-like
domain: Hypothetical protein AF1917
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 84.4 bits (209), Expect = 2e-21
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
           L++ D  G  + V E    +  G+ G ++ ET  T  ++T +    VV K+   F     
Sbjct: 6   LIARDWIGLMVEVVESPNHSEVGIKGEVVDETQNTLKIMT-EKGLKVVAKRGRTFRVWYK 64

Query: 294 CWKITLLGDKLTSR 307
              + + GD +  R
Sbjct: 65  GKIMRIKGDLINFR 78

>d1oqka_ b.137.1.1 (A:) Hypothetical protein MTH11 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 78

class: All beta proteins
fold: Rof/RNase P subunit-like
superfamily: Rof/RNase P subunit-like
family: RNase P subunit p29-like
domain: Hypothetical protein MTH11
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 82.5 bits (204), Expect = 8e-21
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 237 ADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRV-DCW 295
            +L G ++ +A      + G+SG ++ ET  T  +   D +   VPK ++VF FR     
Sbjct: 2   HELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMDDGREITVPKGIAVFHFRTPQGE 61

Query: 296 KITLLGDKLTSR 307
            + + G  L +R
Sbjct: 62  LVEIDGRALVAR 73

>d1v76a_ b.137.1.1 (A:) Hypothetical protein PH1771 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 92

class: All beta proteins
fold: Rof/RNase P subunit-like
superfamily: Rof/RNase P subunit-like
family: RNase P subunit p29-like
domain: Hypothetical protein PH1771
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 79.4 bits (196), Expect = 2e-19
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 232 QCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFR 291
           + ++  +L G  + +      A  G+ G +I ET     +    D+   VPK VS+F F 
Sbjct: 6   RNIIWHELIGLRVRIVGSTHPAFVGIEGYVIDETRNMLVIAG--DRIWKVPKDVSIFEFE 63

Query: 292 V-DCWKITLLGDKLTSR 307
             D  KI + G++L  R
Sbjct: 64  ADDGTKIKIPGERLVGR 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1oqka_	78	Hypothetical protein MTH11 {Archaeon Methanobacter	99.93
d1ts9a_	98	Hypothetical protein AF1917 {Archaeon Archaeoglobu	99.92
d1v76a_	92	Hypothetical protein PH1771 {Archaeon Pyrococcus h	99.92

>d1oqka_ b.137.1.1 (A:) Hypothetical protein MTH11 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Rof/RNase P subunit-like
superfamily: Rof/RNase P subunit-like
family: RNase P subunit p29-like
domain: Hypothetical protein MTH11
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.93  E-value=2.3e-26  Score=177.41  Aligned_cols=73  Identities=27%  Similarity=0.436  Sum_probs=71.1

Q ss_pred             hhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEE-CCEEEEEEcCccccCC
Q 040168          236 SADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRV-DCWKITLLGDKLTSRN  308 (309)
Q Consensus       236 kaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~l-d~~~vtI~G~~L~~RP  308 (309)
                      +||||||.++|++|+||++||++||||+||+|||.|+|++|++++|||++|+|.|++ ++..|+|+|++|.+||
T Consensus         1 RheliG~~i~Vv~S~~pslvGi~GiVv~ETk~tf~I~t~~~~~~~IpK~~~~F~f~~~~g~~v~i~G~~l~~RP   74 (78)
T d1oqka_           1 RHELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMDDGREITVPKGIAVFHFRTPQGELVEIDGRALVARP   74 (78)
T ss_dssp             CCCCSSCEEEEEECSSTTTTTCEEECCEEETTEEEEEETTTEEEEEECTTCEEEEEETTTEEEEECSSSCCCCS
T ss_pred             CccccCCEEEEEEcCCCCccCcEEEEEEeccceEEEEeCCCcEEEEeCCCEEEEEEECCCCEEEEECceecCCh
Confidence            589999999999999999999999999999999999999999999999999999999 6799999999999999

>d1ts9a_ b.137.1.1 (A:) Hypothetical protein AF1917 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Rof/RNase P subunit-like
superfamily: Rof/RNase P subunit-like
family: RNase P subunit p29-like
domain: Hypothetical protein AF1917
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=9.6e-26  Score=180.84  Aligned_cols=76  Identities=24%  Similarity=0.328  Sum_probs=73.4

Q ss_pred             hhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEECCEEEEEEcCccccCC
Q 040168          232 QCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRN  308 (309)
Q Consensus       232 ~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld~~~vtI~G~~L~~RP  308 (309)
                      .+|++||||||.++|++|+||++||++||||+||+|||.|+| +|++++|||++|+|.|++++..|+|+|++|.+||
T Consensus         4 ~~ll~~eliG~~i~Vv~S~npslvGi~GiVV~ETkntf~I~t-~~~~k~IpK~~~~F~f~~~~~~v~I~G~~l~~RP   79 (98)
T d1ts9a_           4 VELIARDWIGLMVEVVESPNHSEVGIKGEVVDETQNTLKIMT-EKGLKVVAKRGRTFRVWYKGKIMRIKGDLINFRP   79 (98)
T ss_dssp             HHHHHSCCTTCEEEEEECSSGGGTTCEEEEEEECSSEEEEEE-SSSEEEEECTTCEEEEEETTEEEEEEGGGTCSCH
T ss_pred             HhhhhhhhcCCeEEEEEcCCCCccCcEEEEEEeccceEEEEe-CCCEEEEeCCCeEEEEEeCCEEEEEEChhhccCH
Confidence            579999999999999999999999999999999999999999 5668899999999999999999999999999998

>d1v76a_ b.137.1.1 (A:) Hypothetical protein PH1771 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Rof/RNase P subunit-like
superfamily: Rof/RNase P subunit-like
family: RNase P subunit p29-like
domain: Hypothetical protein PH1771
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=1.8e-25  Score=177.23  Aligned_cols=76  Identities=29%  Similarity=0.504  Sum_probs=71.7

Q ss_pred             hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEEC-CEEEEEEcCccccCC
Q 040168          231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD-CWKITLLGDKLTSRN  308 (309)
Q Consensus       231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld-~~~vtI~G~~L~~RP  308 (309)
                      .++|++||||||.|+|++|+||++||++||||+||+|||.|++  +++++|||++|+|.|+++ +..|+|+|++|.+||
T Consensus         5 ~~nl~~~eliG~~i~V~~S~~pslvGi~GiVv~ETk~t~~I~t--~~~~~IpK~~~vF~f~~~~~~~v~I~G~~l~~RP   81 (92)
T d1v76a_           5 RRNIIWHELIGLRVRIVGSTHPAFVGIEGYVIDETRNMLVIAG--DRIWKVPKDVSIFEFEADDGTKIKIPGERLVGRP   81 (92)
T ss_dssp             TTGGGTSCCTTCEEEEEEESSGGGTTCEEEEEEECSSEEEEES--SSEEEEESTTEEEEEECTTSCEEEEEGGGGCSCH
T ss_pred             hHHhhhHHhcCCEEEEEEcCCCCccCcEEEEEEeccceEEEEc--CCeEEEecCCeEEEEEECCCeEEEEECceeccCh
Confidence            4689999999999999999999999999999999999999988  578899999999999995 578999999999998