Citrus Sinensis ID: 040279
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 626 | 2.2.26 [Sep-21-2011] | |||||||
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.841 | 0.875 | 0.356 | 1e-105 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.789 | 0.785 | 0.362 | 1e-100 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.837 | 0.843 | 0.345 | 3e-99 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.813 | 0.822 | 0.356 | 8e-99 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.813 | 0.799 | 0.352 | 2e-98 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.817 | 0.795 | 0.343 | 4e-97 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.793 | 0.786 | 0.348 | 2e-96 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.789 | 0.804 | 0.352 | 3e-96 | |
| Q3ECK2 | 548 | Pentatricopeptide repeat- | no | no | 0.734 | 0.839 | 0.384 | 2e-95 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.789 | 0.784 | 0.357 | 4e-95 |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/570 (35%), Positives = 328/570 (57%), Gaps = 43/570 (7%)
Query: 21 LSSLFKS-PRQIAAVSSPETQLNEFLHENCKSGIINL--NEARYFFGYMTHMQPSPPISS 77
+SS F S R +++S+ N E +SGI+++ ++A F M +P P +
Sbjct: 35 ISSFFSSCERDFSSISNG----NVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVD 90
Query: 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCF----------------- 120
F+ F A+A+ + ++ V+ F ++L G+ + TLNI+INCF
Sbjct: 91 FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVM 150
Query: 121 -----------GNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLS 169
+GL +E ++ EA L M+ G +PDV+TY +++NG CR+G+ S
Sbjct: 151 KLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTS 210
Query: 170 VALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVV 229
+AL L +KM + K ++F+YS IIDSLC++G +D A LF EM+ +GI +VV
Sbjct: 211 LALDLLRKMEERNV------KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVV 264
Query: 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELM 289
+L+ G C AG W + L +M+ PN++TFNV++D K GK+ EAN L + M
Sbjct: 265 TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM 324
Query: 290 IQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNV 349
I RG++P+ TYN+LMDGYC+ R+ A + M C +V++ LI GYC + V
Sbjct: 325 ITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRV 384
Query: 350 EEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNIL 409
++ M ++R I G+ +TY+ L+ G Q+G+ A++LF EM + V PD+ TY IL
Sbjct: 385 DDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444
Query: 410 IDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL 469
+DGLC N +++A+++F L+ +K + GI ++ +I+G+CK G++++AW LF LP KG+
Sbjct: 445 LDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGV 504
Query: 470 VPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVE 529
P V+TY++MI GLC+KG L +AN L ME++G APN T+NTL+ L++ + +
Sbjct: 505 KPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAK 564
Query: 530 LLHKMAEPERNLVPDDTTFSIVVDLLAKDE 559
L+ +M D ++ +V+D+L E
Sbjct: 565 LIEEMKSC--GFSADASSIKMVIDMLLSGE 592
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/565 (36%), Positives = 309/565 (54%), Gaps = 71/565 (12%)
Query: 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVIS----------------- 96
+ L++A FG M +P P I FN L A+AK +D VIS
Sbjct: 59 LKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSY 118
Query: 97 ------FYR------------KLVSIGLLPDFLTLNILINCFGNKER------------- 125
F R K++ +G PD +TL+ L+N + + +R
Sbjct: 119 NILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV 178
Query: 126 ---------------GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSV 170
GL + N+ EA L M+A G +PD+ TYGT++NG C+ G++ +
Sbjct: 179 MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 238
Query: 171 ALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230
AL L KKM G E ++ Y+ IID+LC V+ A LF EM +GI P VV
Sbjct: 239 ALSLLKKMEKGKIE------ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292
Query: 231 CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMI 290
+LI C G W + + L +M++ PN++TF+ +ID K GK+ EA L + MI
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352
Query: 291 QRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVE 350
+R ++PD FTY+SL++G+C+ R+D A+ +F M SK C VV+YN LI G+CK VE
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 412
Query: 351 EAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILI 410
E M L+R++ G+ +TYNTL+ GLFQAG AQK+F +M V PD+ TY+IL+
Sbjct: 413 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472
Query: 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV 470
DGLCK +++A+ +F L+ +K E I +N +I+G+CKAG++++ W+LF L KG+
Sbjct: 473 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 532
Query: 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL 530
P V+ Y+ MI G CRKG E+A+ M+++G PN T+NTL+ L++ + EL
Sbjct: 533 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAEL 592
Query: 531 LHKMAEPERNLVPDDTTFSIVVDLL 555
+ +M V D +T S+V+++L
Sbjct: 593 IKEMRSC--GFVGDASTISMVINML 615
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (931), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 203/587 (34%), Positives = 317/587 (54%), Gaps = 63/587 (10%)
Query: 29 RQIAAVSSPETQLNEFLHENCKSGIINLNE--ARYFFGYMTHMQPSPPISSFNLLFGAVA 86
R ++VS + +++ E +SGI+++ E A F MT +P P + F+ LF VA
Sbjct: 26 RVFSSVSDGKGKVS--YRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVA 83
Query: 87 KNRHYDAVISFYRKLVSIGLLPDFLTLNILINC--------------------------- 119
+ + YD V+ +++ G+ + TL+I+INC
Sbjct: 84 RTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTV 143
Query: 120 -FGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKM 178
F GLC+E R+ EA L M+ G +P +IT L+NG C G +S A+ L +M
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203
Query: 179 VSGDYENGLIS-----------------------------KTNIFSYSIIIDSLCKEGLV 209
V ++ ++ K + YSIIID LCK+G +
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSL 263
Query: 210 DKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVM 269
D A LF EM+ +G +++ TTLI GFC AG W++ L +M+ P+++ F+ +
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323
Query: 270 IDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGC 329
IDC K GK+ EA L + MIQRG++PD TY SL+DG+C ++D A + M SKGC
Sbjct: 324 IDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGC 383
Query: 330 KHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQK 389
+ ++NILINGYCK +++ + L+R++ GV +TYNTL+ G + G+ A++
Sbjct: 384 GPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKE 443
Query: 390 LFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLC 449
LF EM V PD+ +Y IL+DGLC N ++A+++F +E +K E I I+N +I G+C
Sbjct: 444 LFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMC 503
Query: 450 KAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVV 509
A ++D+AW+LF LP KG+ P V TY+IMI GLC+KG L +A+ ME++G +PN
Sbjct: 504 NASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGC 563
Query: 510 TFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLA 556
T+N L+ L +K +L+ ++ D +T +VVD+L+
Sbjct: 564 TYNILIRAHLGEGDATKSAKLIEEIKRC--GFSVDASTVKMVVDMLS 608
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (927), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 203/570 (35%), Positives = 307/570 (53%), Gaps = 61/570 (10%)
Query: 46 HENCKSGIINL--NEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVS 103
E ++GI+++ N+A F M +P P FN L AVA+ + YD V+ F + +
Sbjct: 39 KERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMEL 98
Query: 104 IGLLPDFLTLNILINCFGNKER----------------------------GLCVENRIKE 135
G+ D T+ I+INC+ K++ G C+E R+ E
Sbjct: 99 NGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSE 158
Query: 136 ATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLIS------ 189
A L M+ RPD++T TLING C G +S AL L +MV ++ ++
Sbjct: 159 AVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLN 218
Query: 190 -----------------------KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP 226
K ++ YSI+IDSLCK+G D A LF EM+ +GI
Sbjct: 219 RLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKA 278
Query: 227 AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLL 286
VV ++LI G C G W++ + EM+ P+++TF+ +ID K GK+ EA L
Sbjct: 279 DVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELY 338
Query: 287 ELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKI 346
MI RG+ PD TYNSL+DG+C + A ++F M SKGC+ +V+Y+ILIN YCK
Sbjct: 339 NEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKA 398
Query: 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTY 406
V++ M L+R+I S G+ ITYNTL+ G Q+G+ A++LF EM V P + TY
Sbjct: 399 KRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTY 458
Query: 407 NILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466
IL+DGLC N + +A+++F ++ ++ GI I+N +I G+C A ++D+AW LF L
Sbjct: 459 GILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 467 KGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK 526
KG+ P VVTY++MI GLC+KG L +A+ M+++GC P+ T+N L+ L +
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLIS 578
Query: 527 VVELLHKMAEPERNLVPDDTTFSIVVDLLA 556
VEL+ +M D +T +V+D+L+
Sbjct: 579 SVELIEEMKVC--GFSADSSTIKMVIDMLS 606
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (925), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 201/570 (35%), Positives = 310/570 (54%), Gaps = 61/570 (10%)
Query: 46 HENCKSGIINL--NEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVS 103
E +SG++++ ++A F M H +P P + F+ LF A+AK + YD V++ +++
Sbjct: 57 RERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMEL 116
Query: 104 IGLLPDFLTLNILINCFGNKER----------------------------GLCVENRIKE 135
G+ + TL+I+INCF + GLC+E R+ E
Sbjct: 117 KGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSE 176
Query: 136 ATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLIS------ 189
A L M+ G +PD+IT TL+NG C +G + A+ L KMV + ++
Sbjct: 177 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 236
Query: 190 -----------------------KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP 226
K + YSIIID LCK G +D A LF EM+ +GI
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITT 296
Query: 227 AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLL 286
++ LI GFC AG W++ L +M+ PN++TF+V+ID K GK+ EA L
Sbjct: 297 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 356
Query: 287 ELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKI 346
+ MI RG+ PD TY SL+DG+C +D A ++ M SKGC + ++NILINGYCK
Sbjct: 357 KEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKA 416
Query: 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTY 406
+++ + L+R++ GV +TYNTL+ G + G+ A++LF EM V P++ TY
Sbjct: 417 NRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 476
Query: 407 NILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466
IL+DGLC N ++A+++F +E +K E I I+N +I G+C A ++D+AW+LF LP
Sbjct: 477 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 536
Query: 467 KGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK 526
KG+ P V TY+IMI GLC+KG L +A ME++G AP+ T+N L+ L + +K
Sbjct: 537 KGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATK 596
Query: 527 VVELLHKMAEPERNLVPDDTTFSIVVDLLA 556
V+L+ ++ D +T +V+D+L+
Sbjct: 597 SVKLIEELKRC--GFSVDASTIKMVIDMLS 624
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 197/573 (34%), Positives = 310/573 (54%), Gaps = 61/573 (10%)
Query: 46 HENCKSGIINL--NEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVS 103
+ SG++ + ++A F M +P P + FN LF A+AK + Y+ V++ +++ S
Sbjct: 57 RDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMES 116
Query: 104 IGLLPDFLTLNILINCFGNKER----------------------------GLCVENRIKE 135
G+ TL+I+INCF + GLC+E R+ E
Sbjct: 117 KGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSE 176
Query: 136 ATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLIS------ 189
A L M+ G +P +IT TL+NG C G +S A+ L +MV ++ ++
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLN 236
Query: 190 -----------------------KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP 226
K + YSIIID LCK+G +D A LF EM+ +G
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKA 296
Query: 227 AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLL 286
++ TLI GFC AG W++ L +M+ PN++TF+V+ID K GK+ EA+ LL
Sbjct: 297 DIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLL 356
Query: 287 ELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKI 346
+ M+QRG+ P+ TYNSL+DG+C R++ A ++ M SKGC ++++NILINGYCK
Sbjct: 357 KEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKA 416
Query: 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTY 406
+++ + L+R++ GV +TYNTL+ G Q+G+ A+KLF EM V PD+ +Y
Sbjct: 417 NRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSY 476
Query: 407 NILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466
IL+DGLC N +++A+++F +E +K E I I+ +I G+C A ++D+AW+LF LP
Sbjct: 477 KILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPL 536
Query: 467 KGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK 526
KG+ Y+IMI LCRK L KA+ M + G AP+ +T+N L+ L ++ +
Sbjct: 537 KGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATT 596
Query: 527 VVELLHKMAEPERNLVPDDTTFSIVVDLLAKDE 559
EL+ +M D +T +V+++L+ E
Sbjct: 597 AAELIEEMKSS--GFPADVSTVKMVINMLSSGE 627
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 198/568 (34%), Positives = 298/568 (52%), Gaps = 71/568 (12%)
Query: 51 SGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDF 110
S II +++A FG M +P P I FN L AVAK ++ VIS ++ ++G+ D
Sbjct: 59 SDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDL 118
Query: 111 LTLNILINCFGNKER----------------------------GLCVENRIKEATWLFKN 142
T +I INCF + + G C RI +A L
Sbjct: 119 YTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQ 178
Query: 143 MIAFGVR-----------------------------------PDVITYGTLINGFCRTGN 167
M+ G + PD++TYGT++NG C+ G+
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238
Query: 168 LSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA 227
+ +AL L KKM G E ++ Y+ IID LCK +D A LF EM +GI P
Sbjct: 239 IDLALSLLKKMEKGKIE------ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292
Query: 228 VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLE 287
V ++LI C G W + + L +M++ PN++TF+ +ID K GK+ EA L +
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 352
Query: 288 LMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL 347
MI+R ++PD FTY+SL++G+C+ R+D A+ +F M SK C VV+Y+ LI G+CK
Sbjct: 353 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAK 412
Query: 348 NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYN 407
VEE M L+R++ G+ +TY TL+ G FQA AQ +F +M V P++ TYN
Sbjct: 413 RVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN 472
Query: 408 ILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467
IL+DGLCKN + +A+ +F L+ + E I +N +I+G+CKAG++++ WELF L K
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK 532
Query: 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKV 527
G+ P V+ Y+ MI G CRKG E+A+ L M+++G PN T+NTL+ L++
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592
Query: 528 VELLHKMAEPERNLVPDDTTFSIVVDLL 555
EL+ +M D +T +V ++L
Sbjct: 593 AELIKEMRSC--GFAGDASTIGLVTNML 618
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 199/565 (35%), Positives = 295/565 (52%), Gaps = 71/565 (12%)
Query: 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL 113
+ L+EA FG M +P P I F+ L A+AK + +D VISF K+ +G+ + T
Sbjct: 44 LKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTY 103
Query: 114 NILINCFGNKER----------------------------GLCVENRIKEATWLFKNMIA 145
NI+INC + + G C NRI EA L M+
Sbjct: 104 NIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 163
Query: 146 FGV-----------------------------------RPDVITYGTLINGFCRTGNLSV 170
G +PD++TYG +ING C+ G +
Sbjct: 164 MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 223
Query: 171 ALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230
AL L KM G E ++ YS +IDSLCK VD A LF EM +GI P V
Sbjct: 224 ALNLLNKMEKGKIE------ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFT 277
Query: 231 CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMI 290
++LI C G W + + L +ML+ PN++TFN +ID K GK+ EA L + MI
Sbjct: 278 YSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI 337
Query: 291 QRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVE 350
QR ++P+ TYNSL++G+C+ R+D A++IF M SK C VV+YN LING+CK V
Sbjct: 338 QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVV 397
Query: 351 EAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILI 410
+ M L+R + G+ +TY TL+ G FQA AQ +F +M V P++ TYN L+
Sbjct: 398 DGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLL 457
Query: 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV 470
DGLCKN +++A+ +F L+ +K E I +N + +G+CKAG++++ W+LF L KG+
Sbjct: 458 DGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVK 517
Query: 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL 530
P V+ Y+ MI G C+KG E+A + M+++G P+ T+NTL+ L++ + EL
Sbjct: 518 PDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 577
Query: 531 LHKMAEPERNLVPDDTTFSIVVDLL 555
+ +M D +T+ +V D+L
Sbjct: 578 IKEMRSCR--FAGDASTYGLVTDML 600
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 350 bits (897), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 185/481 (38%), Positives = 271/481 (56%), Gaps = 21/481 (4%)
Query: 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL 113
I LN+A F M +P P I FN L A+ K + YD VIS +K+ +G+ D T
Sbjct: 64 IKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTF 123
Query: 114 NILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALR 173
NI+INCF C ++ A + M+ G PD +T G+L+NGFCR +S A+
Sbjct: 124 NIVINCF-------CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176
Query: 174 LHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233
L KMV Y K +I +Y+ IIDSLCK V+ A + F E++ +GI P VV T
Sbjct: 177 LVDKMVEIGY------KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230
Query: 234 LIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRG 293
L++G C + W + L +M+ PN++T++ ++D K GK+ EA L E M++
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290
Query: 294 LNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAM 353
++PD TY+SL++G CL RID A ++F M SKGC VVSYN LING+CK VE+ M
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350
Query: 354 SLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGL 413
L+R++ G+ +TYNTL+ G FQAG AQ+ F +M + + PD+ TYNIL+ GL
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410
Query: 414 CKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTV 473
C N +++A+ +F ++ + + I + +I G+CK G+++ AW LF L KGL P +
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDI 470
Query: 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHK 533
VTY+ M+ GLC KG L + M++ G N T L + + EL+ K
Sbjct: 471 VTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT--------LSDGDITLSAELIKK 522
Query: 534 M 534
M
Sbjct: 523 M 523
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 349 bits (896), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 202/565 (35%), Positives = 302/565 (53%), Gaps = 71/565 (12%)
Query: 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVIS----------------- 96
+ L++A FG M +P P I F+ L A+AK +D VIS
Sbjct: 60 LKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTY 119
Query: 97 ------FYR------------KLVSIGLLPDFLTLNILIN--CFGNKE------------ 124
F R K++ +G PD +TLN L+N C GN+
Sbjct: 120 SILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE 179
Query: 125 --------------RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSV 170
GL NR EA L M+ G +PD++TYG ++NG C+ G++ +
Sbjct: 180 MGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDL 239
Query: 171 ALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230
AL L KKM G E G++ Y+ IID+LC V+ A LF EM +GI P VV
Sbjct: 240 ALSLLKKMEQGKIEPGVVI------YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 293
Query: 231 CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMI 290
+LI C G W + + L +M++ PN++TF+ +ID K GK+ EA L + MI
Sbjct: 294 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 353
Query: 291 QRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVE 350
+R ++PD FTY+SL++G+C+ R+D A+ +F M SK C VV+YN LI G+CK V+
Sbjct: 354 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVD 413
Query: 351 EAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILI 410
E M L+R++ G+ +TY TL+ G FQA + AQ +F +M V PD+ TY+IL+
Sbjct: 414 EGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILL 473
Query: 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV 470
DGLC N V+ A+ +F L+ +K E I +N +I+G+CKAG++++ W+LF L KG+
Sbjct: 474 DGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 533
Query: 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL 530
P VVTY+ M+ G CRKG E+A+ M++ G P+ T+NTL+ L++ + EL
Sbjct: 534 PNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAEL 593
Query: 531 LHKMAEPERNLVPDDTTFSIVVDLL 555
+ +M V D +T +V ++L
Sbjct: 594 IREMRSCR--FVGDASTIGLVTNML 616
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 626 | ||||||
| 359479583 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.875 | 0.874 | 0.530 | 1e-174 | |
| 449520325 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.873 | 0.904 | 0.488 | 1e-157 | |
| 449529622 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.878 | 0.889 | 0.476 | 1e-151 | |
| 449520323 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.837 | 0.866 | 0.491 | 1e-148 | |
| 255559961 | 628 | pentatricopeptide repeat-containing prot | 0.881 | 0.878 | 0.459 | 1e-147 | |
| 449462479 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.833 | 0.9 | 0.466 | 1e-143 | |
| 449462477 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.824 | 0.864 | 0.479 | 1e-140 | |
| 449444228 | 585 | PREDICTED: pentatricopeptide repeat-cont | 0.787 | 0.842 | 0.446 | 1e-126 | |
| 449444222 | 588 | PREDICTED: pentatricopeptide repeat-cont | 0.789 | 0.840 | 0.437 | 1e-123 | |
| 147768816 | 653 | hypothetical protein VITISV_031897 [Viti | 0.790 | 0.758 | 0.404 | 1e-110 |
| >gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 313/590 (53%), Positives = 407/590 (68%), Gaps = 42/590 (7%)
Query: 14 ETVSKVKLSSLFKSP------------RQIAAVSSPETQLNEFLHENCKSGIINLNEARY 61
T + KLSSLF+ P + + + QL FL NCKSG I +EA
Sbjct: 19 RTTPRCKLSSLFEHPHRPISPGPISLTKDTVSNAPDRGQLENFLKSNCKSGHIKRSEAFS 78
Query: 62 FFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFG 121
F ++ MQP+PPISSFN L GAVAK + Y VIS Y+++ IGL PDF+TLNILINC+
Sbjct: 79 VFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYC 138
Query: 122 NKE----------------------------RGLCVENRIKEATWLFKNMIAFGVRPDVI 153
N +GLC+ +RI EAT L + M+ G RP+V+
Sbjct: 139 NLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVV 198
Query: 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAK 213
TYGTL+NG C TGN +A++LH++M++G+ G+ K N+ Y IIDSLCK+GL+DK K
Sbjct: 199 TYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGK 258
Query: 214 ELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCL 273
ELFLEMKGRGI+P VV +++IHG C G WE GLF EM+D G PN++TFNV+ID L
Sbjct: 259 ELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDAL 318
Query: 274 CKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTV 333
CK GK+ EAN LL+LMIQRG +PD FTYN+L+DG+CL GRID AR++F+SM SKG +
Sbjct: 319 CKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDA 378
Query: 334 VSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDE 393
VSYN+LINGYCK + EA LYR+++ + TVITYNTLL+GLF+ G+ A LF E
Sbjct: 379 VSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGE 438
Query: 394 MKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGR 453
MK++++ P+ TYNIL+DGLCKNN + EA++LFH LE + F+ I+IFNCLIDGLCKA +
Sbjct: 439 MKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARK 498
Query: 454 LDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNT 513
++ A ELF++L +GL P V+TY++MIHGLC+ G+LE A D L ME+ GCAPN+VTFNT
Sbjct: 499 IEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNT 558
Query: 514 LMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHE 563
LM GF QN++ KVVELL +MA E++ PD +T SIVVDLL+KDEKY E
Sbjct: 559 LMRGFCQNDEMQKVVELLQEMA--EKDFSPDASTISIVVDLLSKDEKYRE 606
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 284/581 (48%), Positives = 388/581 (66%), Gaps = 34/581 (5%)
Query: 12 SSETVSKVKLSSLFKSPRQIAAVSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQP 71
S+ ++ LSSLF +A+ SP Q+ FL +CK+G + A +FF M P
Sbjct: 10 SASSIRNSNLSSLFTHS---SAIPSPNPQIAFFL-RHCKTGNVTATHALHFFHLMMRSTP 65
Query: 72 SPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKER------ 125
+P +SSFN L +AK +HY V S Y ++ GL D TLNIL+NC N R
Sbjct: 66 TPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFA 125
Query: 126 ----------------------GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFC 163
GLC+E+RI EAT LF M G PDV+TYGTLI G C
Sbjct: 126 AFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLC 185
Query: 164 RTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG 223
TGN+++AL+LH++M++ + K N+ +Y+II+D LCK G D+AK+LF EMK +G
Sbjct: 186 GTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQG 245
Query: 224 INPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283
+ P+++ +LIHGFCCAG WEE L EMLD G +P+++TFNV+ID LCK GK+ EA
Sbjct: 246 MIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAK 305
Query: 284 GLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGY 343
LL +MI+ G+ PD TYNSL++G+C+VG +++ARE+F+SM SKGC+ V+SYN+LINGY
Sbjct: 306 KLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGY 365
Query: 344 CKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDL 403
K L VEEAM LY +++ G R VITY++LL G+F AG+ A+KLF MK + + +
Sbjct: 366 SKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENS 425
Query: 404 STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK 463
TY I +DGLCKN+C+ EA+KLF L+ + F+ IE NCLIDGLCKAG+L+ AWELF K
Sbjct: 426 YTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEK 485
Query: 464 LPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNK 523
L +G P VVTY+IMIHG CR+G+++KAN + ME NGC P+++T+NTLM GF ++NK
Sbjct: 486 LSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNK 545
Query: 524 TSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHEC 564
+VV+LLH+MA ++++ PD T SIVVD+L+KDEKY EC
Sbjct: 546 LEEVVQLLHRMA--QKDVSPDAITCSIVVDMLSKDEKYQEC 584
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 279/585 (47%), Positives = 379/585 (64%), Gaps = 35/585 (5%)
Query: 12 SSETVSKVKLSSLFKSPRQI--AAVSSPETQLNEFLH---ENCKSGIINLNEARYFFGYM 66
SS S + +S P I AA + E + L NCK+G I +A +FF M
Sbjct: 23 SSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSLFLRNCKTGNITAIQAFHFFDLM 82
Query: 67 THMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKER- 125
P PPISSFN L G +AK HY + S Y ++ GL PD TL+IL NC N R
Sbjct: 83 MRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRV 142
Query: 126 ---------------------------GLCVENRIKEATWLFKNMIAFGVRPDVITYGTL 158
GLC+E+RI EAT LF M G P+ +TYGTL
Sbjct: 143 SEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTL 202
Query: 159 INGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLE 218
I G C+TGN+++AL+LHK+M++ + G+ K + +YSIIID LCK G D+AKELF E
Sbjct: 203 IKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEE 262
Query: 219 MKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGK 278
MK +G+ P V+ +TLIHGFCCAG W++ LF EM+D G +P+++TF+V+ID LCK GK
Sbjct: 263 MKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGK 322
Query: 279 INEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNI 338
+ EA LLE+MIQRG+ P+ TYNSL+DG+C+VG +++ARE+FLSM SKG + +SY
Sbjct: 323 VTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTT 382
Query: 339 LINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN 398
LINGYCK V+EAM+LY +++ G V TY TLL GLFQ G+ G A+KLF MK Y
Sbjct: 383 LINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYG 442
Query: 399 VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAW 458
V + Y I +DGLCKN+C+ EA++LF+ L+ F+ IE ++CLIDGLCKAG+L+ AW
Sbjct: 443 VSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAW 502
Query: 459 ELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518
ELF KL Q+GL P VVTY+IMIHG C+ G+++ AN ME+NGC P+++ +NTL+ GF
Sbjct: 503 ELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGF 562
Query: 519 LQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHE 563
+ NK +V++LLHKM ++++ P+ + +IVVD+L KDEKY +
Sbjct: 563 CEGNKLEEVIKLLHKMV--QKDVSPNAASCTIVVDMLCKDEKYKK 605
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/553 (49%), Positives = 360/553 (65%), Gaps = 29/553 (5%)
Query: 17 SKVKLSSLFKSPRQIAAVSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPIS 76
S V SL SP+ S + QL+ FLH NCK+G I +A FF M + P+PP+S
Sbjct: 39 SAVHHKSLNVSPQNFNTPISFQQQLSMFLH-NCKTGNITATQAFQFFHLMMYSNPTPPLS 97
Query: 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKER----------- 125
SF L +AK +HY V Y ++ G+ PD TLNIL+NC N R
Sbjct: 98 SFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGI 157
Query: 126 -----------------GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNL 168
GLC+E+RI +A LF M G P+ ITYGTL+ G CRTGN+
Sbjct: 158 LRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNI 217
Query: 169 SVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAV 228
S+AL+LH++M++ G+ K + SYSIIID+LCK+ D+A++LF EMK +G+ P V
Sbjct: 218 SIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTV 277
Query: 229 VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLEL 288
+ T+LIHGFCC G WEE LF EM++ G +PN++TFNV+ID LCK GK+ EA LLE+
Sbjct: 278 ISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEV 337
Query: 289 MIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILN 348
MIQRG+ P+ TYNSL++G+CLVG +++ARE+F+SM SKGC+ V+ Y +LINGYCK
Sbjct: 338 MIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSK 397
Query: 349 VEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNI 408
VEEAM LY ++ G R V TY LL+GLFQ G+ G A+KLF MK+Y + DL Y I
Sbjct: 398 VEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGI 457
Query: 409 LIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKG 468
++GLCKN C+ EA++LF+ L+ + IE FNCLIDGLCKAG+L+ AWELF KLPQ+
Sbjct: 458 FLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEE 517
Query: 469 LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVV 528
L P VVTY+IMIH CR G++ KAN MEKNGC P+ +T+ TL+ GF ++ K KVV
Sbjct: 518 LQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVV 577
Query: 529 ELLHKMAEPERNL 541
ELLH M + + +L
Sbjct: 578 ELLHMMVQRDVSL 590
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 288/627 (45%), Positives = 388/627 (61%), Gaps = 75/627 (11%)
Query: 1 MASRTQFRCLFSSET----VSKVKLSSLFKS------------------------PRQIA 32
MA +T L+++ + S KLSSLF S + +
Sbjct: 1 MARKTSSSSLYTATSSLSAASTAKLSSLFTSLHTHAISNLKTSPKISNEQFINFKSKTLP 60
Query: 33 AVSSPETQ----LNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKN 88
S+P TQ L +FL NCKSG L+EA +FF M HMQ +P +S FN LFGA+AK
Sbjct: 61 INSTPNTQSDNPLEQFLEINCKSGDFTLHEALHFFNQMIHMQTTPALSRFNNLFGALAKK 120
Query: 89 RHYDAVISFYRKLVSIGLLPDFLTLNILINC----------------------------F 120
+ Y VIS ++ SIGLL +F++LNIL+NC F
Sbjct: 121 KQYLHVISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTF 180
Query: 121 GNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVS 180
N +GLC+E +I EA +FK M F RP IT G LI+G CRTGN AL+LH+ M++
Sbjct: 181 TNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMIN 240
Query: 181 GDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC 240
G+ + G+ K + SYS IIDSLCK+GLV++AKE F+EMK +GI P VV T+L+HG C
Sbjct: 241 GNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCS 300
Query: 241 AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFT 300
A WEE LFIEM+D G P+++TF+V+I LCK GK+ EA+GL +LM+QR + P T
Sbjct: 301 ASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRT 360
Query: 301 YNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQII 360
YN L++GYCL G +D ++IFLSM +K C+H SY+IL+ YCK V AM LYR+++
Sbjct: 361 YNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMM 420
Query: 361 SNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPD---LSTYNILIDGLCKNN 417
G++ TVITY+ + G A+KLF E++ ++ D S YN+ +DGLCKN
Sbjct: 421 DRGIQPTVITYS----------KVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNG 470
Query: 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYS 477
CV EA+ +F+ LE KF + IFN LI+G+C++ +L+ AWELF++L + L P VVTY+
Sbjct: 471 CVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYT 530
Query: 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEP 537
IMI+GLC+ G+ +KA D L ME+ GCAPNVVTFNTLM G N++ K+VELLHKMA
Sbjct: 531 IMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMA-- 588
Query: 538 ERNLVPDDTTFSIVVDLLAKDEKYHEC 564
R L PD +T IV+D+L KDE YHEC
Sbjct: 589 ARKLSPDASTLLIVMDILLKDENYHEC 615
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 271/581 (46%), Positives = 371/581 (63%), Gaps = 59/581 (10%)
Query: 12 SSETVSKVKLSSLFKSPRQIAAVSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQP 71
S+ ++ LSSLF +A+ SP Q+ FL +CK+G + A +FF M P
Sbjct: 10 SASSIRNSNLSSLFTHS---SAIPSPNPQIAFFL-RHCKTGNVTATHALHFFHLMMRSTP 65
Query: 72 SPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKER------ 125
+P +SSFN L +AK +HY V S Y ++ GL D TLNIL+NC N R
Sbjct: 66 TPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFA 125
Query: 126 ----------------------GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFC 163
GLC+E+RI EAT LF M G PDV+TYGTLI G C
Sbjct: 126 AFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLC 185
Query: 164 RTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG 223
TGN+++AL+LH++M++ + K N+ +Y+II+D LCK G D+AK+LF EMK +G
Sbjct: 186 GTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQG 245
Query: 224 INPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283
+ P EMLD G +P+++TFNV+ID LCK GK+ EA
Sbjct: 246 MIPN-------------------------EMLDQGLQPDMVTFNVLIDTLCKEGKVIEAK 280
Query: 284 GLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGY 343
LL +MI+ G+ PD TYNSL++G+C+VG +++ARE+F+SM SKGC+ V+SYN+LINGY
Sbjct: 281 KLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGY 340
Query: 344 CKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDL 403
K L VEEAM LY +++ G R VITY++LL G+F AG+ A+KLF MK + + +
Sbjct: 341 SKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENS 400
Query: 404 STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK 463
TY I +DGLCKN+C+ EA+KLF L+ + F+ IE NCLIDGLCKAG+L+ AWELF K
Sbjct: 401 YTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEK 460
Query: 464 LPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNK 523
L +G P VVTY+IMIHG CR+G+++KAN + ME NGC P+++T+NTLM GF ++NK
Sbjct: 461 LSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNK 520
Query: 524 TSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHEC 564
+VV+LLH+MA ++++ PD T SIVVD+L+KDEKY EC
Sbjct: 521 LEEVVQLLHRMA--QKDVSPDAITCSIVVDMLSKDEKYQEC 559
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 265/553 (47%), Positives = 354/553 (64%), Gaps = 37/553 (6%)
Query: 17 SKVKLSSLFKSPRQIAAVSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPIS 76
S V SL SP+ S + QL+ FLH NCK+G I +A FF M + P+PP+S
Sbjct: 39 SAVHHKSLNVSPQNFNTPISFQQQLSMFLH-NCKTGNITAIQAFQFFHLMMYSNPTPPLS 97
Query: 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKER----------- 125
SF L +AK +HY V Y ++ G+ PD TLNIL+NC N R
Sbjct: 98 SFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGI 157
Query: 126 -----------------GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNL 168
GLC+E+RI +A LF M G P+ ITYGTL+ G CRTGN+
Sbjct: 158 LRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNI 217
Query: 169 SVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAV 228
S+AL+LH++M++ G+ K + SYSIIID+LCK+ D+A++LF EMK +G+ P V
Sbjct: 218 SIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTV 277
Query: 229 VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLEL 288
+ T+L+ WEE LF EM++ G +PN++TFNV+ID LCK GK+ EA LLE+
Sbjct: 278 ISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEV 329
Query: 289 MIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILN 348
MIQRG+ P+ TYNSL++G+CLVG +++ARE+F+SM SKGC+ V+ Y +LINGYCK
Sbjct: 330 MIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSK 389
Query: 349 VEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNI 408
VEEAM LY ++ G R V TY LL+GLFQ G+ G A+KLF MK+Y + DL Y I
Sbjct: 390 VEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGI 449
Query: 409 LIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKG 468
++GLCKN C+ EA++LF+ L+ + IE FNCLIDGLCKAG+L+ AWELF KLPQ+
Sbjct: 450 FLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEE 509
Query: 469 LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVV 528
L P VVTY+IMIH CR G++ KAN MEKNGC P+ +T+ TL+ GF ++ K KVV
Sbjct: 510 LQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVV 569
Query: 529 ELLHKMAEPERNL 541
ELLH M + + +L
Sbjct: 570 ELLHMMVQRDVSL 582
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/567 (44%), Positives = 344/567 (60%), Gaps = 74/567 (13%)
Query: 28 PRQIAAVS---SPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGA 84
P+ + A+S S + L F+H NCK G I +A FF M I SFNLL GA
Sbjct: 47 PKSLHALSERISLQHGLPMFIH-NCKKGNITSTQALQFFDLMMR-----SIISFNLLLGA 100
Query: 85 VAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKER------------------- 125
+AK +HY V S Y+K+ GL P+F TLNILINC N R
Sbjct: 101 LAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPD 160
Query: 126 ---------GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHK 176
GLC+E+RI EAT LF M G P+V+TYGTLI G CRTGN+++AL+LH+
Sbjct: 161 VVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQ 220
Query: 177 KMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236
+M++G + K NIFSY+IIID LCK
Sbjct: 221 EMLNGTSPYAINCKPNIFSYNIIIDELCK------------------------------- 249
Query: 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNP 296
G W+E LF EM+D G RP+++TF+ +ID LCK G + EA LE M+ RG+ P
Sbjct: 250 ----IGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVP 305
Query: 297 DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLY 356
D FT+ SL++G+CLVG +D+A+E+FLSM SKG + V+SY +LI GYCK NVEEAM LY
Sbjct: 306 DLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLY 365
Query: 357 RQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN 416
+++ G + T+ LL GLF AG+ G A+KLF +K + V +L ++ +DGLCKN
Sbjct: 366 NEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKN 425
Query: 417 NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTY 476
C+ EA++LF+ L+ + IE FNCLIDGLCKA +L+ AWELF KL Q+GL P VVTY
Sbjct: 426 GCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTY 485
Query: 477 SIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536
IMI+G C+ G+++ AN ME+NGC PN++T++ L+HGF +NNK +VV+LLHKM +
Sbjct: 486 CIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQ 545
Query: 537 PERNLVPDDTTFSIVVDLLAKDEKYHE 563
+ +L + ++IV D+++KDEK E
Sbjct: 546 KDVSLAA--SIYTIVEDMVSKDEKCRE 570
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 249/569 (43%), Positives = 340/569 (59%), Gaps = 75/569 (13%)
Query: 23 SLFKSPRQIAAVSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLF 82
SL SP +I S + + FLH+ CK+G I++ +A FF M I SFN L
Sbjct: 49 SLHASPERI----SFQHGIPMFLHK-CKTGSISVTQAHQFFDLMMR-----SIFSFNRLL 98
Query: 83 GAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKER----------------- 125
+AK HY V S Y+++ GL PD LTLNILINC N R
Sbjct: 99 AGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYI 158
Query: 126 -----------GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRL 174
GLCVE+RI EAT LF M G P+V+TYGTLI G C GN+++AL+
Sbjct: 159 PDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKW 218
Query: 175 HKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTL 234
H++M++ + N+ SYSIIID
Sbjct: 219 HQEMLNDTSPYVFNCRPNVISYSIIID--------------------------------- 245
Query: 235 IHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL 294
G C GNWEE LF EM+D G +PN++TF+V+ID LCK G++ +A LLE+MIQ G+
Sbjct: 246 --GLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGI 303
Query: 295 NPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMS 354
P+ FTY SL+ G+CLVG +++A+E+F+SM SKG + V+SYN+LINGYCK L VEEAM
Sbjct: 304 VPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMK 363
Query: 355 LYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLC 414
L+ +++ G+ V T LL LF AG+ A++LF +K Y + DL I +DGLC
Sbjct: 364 LFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLC 423
Query: 415 KNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVV 474
KN + EA+KLF+ LE + IE F CLIDGLCKAG+L+ AWELF KL ++G+ P +
Sbjct: 424 KNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAM 483
Query: 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534
YS MIHG C+KG+++KAN ME+NGC+P+++T++ LM GF ++NK KVV+LLH+M
Sbjct: 484 AYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRM 543
Query: 535 AEPERNLVPDDTTFSIVVDLLAKDEKYHE 563
E+++ PDD ++IV D++ KDEKY E
Sbjct: 544 I--EKDVWPDDGIYAIVEDMVCKDEKYKE 570
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/531 (40%), Positives = 312/531 (58%), Gaps = 36/531 (6%)
Query: 56 LNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNI 115
L+EA F M H QP P FN L ++AK +H+ ++S R++ S G+ PD TL I
Sbjct: 51 LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110
Query: 116 LIN--CFGNKE--------------------------RGLCVENRIKEATWLFKNMIAFG 147
+IN C N+ RGLCVE +I EA LF MI G
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170
Query: 148 VRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG 207
+P+V+TYGTLING C+ GN S A+RL + M G+ + N+ +S +IDSLCK+
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCKDR 224
Query: 208 LVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFN 267
V +A +F EM +GI+P +V +LIHG C W+ V L EM+D P++ T N
Sbjct: 225 QVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLN 284
Query: 268 VMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSK 327
++D LCK G + EA+ ++++MI RG+ P+ TYN+LMDG+CL +D A ++F +M K
Sbjct: 285 TVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHK 344
Query: 328 GCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYA 387
C V+SYN LINGYCKI +V++AM L+ ++ + +TYNTL+ GL G+ A
Sbjct: 345 DCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDA 404
Query: 388 QKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDG 447
LF EM PDL TY L D LCKN + +A+ L +E + ++ I+I+ ++DG
Sbjct: 405 ISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDG 464
Query: 448 LCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN 507
+C+AG L++A +LF L KGL P V TY+IMIHGLC++G L +A+ M KNGC+PN
Sbjct: 465 MCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPN 524
Query: 508 VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKD 558
T+N + GFL+NN+ + +ELL +M R D +T +++V +L+ D
Sbjct: 525 DCTYNLITRGFLRNNEALRTIELLEEML--ARGFSVDVSTTTLLVGMLSDD 573
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 626 | ||||||
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.749 | 0.757 | 0.382 | 1.1e-89 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.787 | 0.783 | 0.374 | 2.2e-89 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.789 | 0.795 | 0.363 | 7.5e-89 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.785 | 0.780 | 0.385 | 2.5e-88 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.749 | 0.736 | 0.373 | 2.5e-88 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.712 | 0.813 | 0.392 | 5.3e-88 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.785 | 0.801 | 0.377 | 8.6e-88 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.782 | 0.772 | 0.370 | 1.8e-87 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.793 | 0.771 | 0.359 | 2.9e-87 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.787 | 0.782 | 0.358 | 3e-85 |
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 185/484 (38%), Positives = 285/484 (58%)
Query: 73 PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132
P +F+ L ++ ++V + PD +T++ LIN GLC++ R
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLIN-------GLCLKGR 190
Query: 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTN 192
+ EA L M+ +G +PD +TYG ++N C++GN ++AL L +KM E + K +
Sbjct: 191 VSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME----ERNI--KAS 244
Query: 193 IFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFI 252
+ YSI+IDSLCK+G D A LF EM+ +GI VV ++LI G C G W++ +
Sbjct: 245 VVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLR 304
Query: 253 EMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVG 312
EM+ P+++TF+ +ID K GK+ EA L MI RG+ PD TYNSL+DG+C
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364
Query: 313 RIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYN 372
+ A ++F M SKGC+ +V+Y+ILIN YCK V++ M L+R+I S G+ ITYN
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424
Query: 373 TLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMN 432
TL+ G Q+G+ A++LF EM V P + TY IL+DGLC N + +A+++F ++ +
Sbjct: 425 TLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS 484
Query: 433 KFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKA 492
+ GI I+N +I G+C A ++D+AW LF L KG+ P VVTY++MI GLC+KG L +A
Sbjct: 485 RMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 544
Query: 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVV 552
+ M+++GC P+ T+N L+ L + VEL+ +M D +T +V+
Sbjct: 545 DMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVC--GFSADSSTIKMVI 602
Query: 553 DLLA 556
D+L+
Sbjct: 603 DMLS 606
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 190/508 (37%), Positives = 291/508 (57%)
Query: 48 NCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLL 107
NC L A G M + P I + + L + ++ ++ +
Sbjct: 123 NCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQ 182
Query: 108 PDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGN 167
P+ +T N LI+ GL + N+ EA L M+A G +PD+ TYGT++NG C+ G+
Sbjct: 183 PNTVTFNTLIH-------GLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 235
Query: 168 LSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA 227
+ +AL L KKM G E ++ Y+ IID+LC V+ A LF EM +GI P
Sbjct: 236 IDLALSLLKKMEKGKIE------ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 289
Query: 228 VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLE 287
VV +LI C G W + + L +M++ PN++TF+ +ID K GK+ EA L +
Sbjct: 290 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349
Query: 288 LMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL 347
MI+R ++PD FTY+SL++G+C+ R+D A+ +F M SK C VV+YN LI G+CK
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409
Query: 348 NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYN 407
VEE M L+R++ G+ +TYNTL+ GLFQAG AQK+F +M V PD+ TY+
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469
Query: 408 ILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467
IL+DGLCK +++A+ +F L+ +K E I +N +I+G+CKAG++++ W+LF L K
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529
Query: 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKV 527
G+ P V+ Y+ MI G CRKG E+A+ M+++G PN T+NTL+ L++ +
Sbjct: 530 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAAS 589
Query: 528 VELLHKMAEPERNLVPDDTTFSIVVDLL 555
EL+ +M V D +T S+V+++L
Sbjct: 590 AELIKEMRSC--GFVGDASTISMVINML 615
|
|
| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
Identities = 185/509 (36%), Positives = 293/509 (57%)
Query: 48 NCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLL 107
NC L+ A G + + P +F+ L + + ++V +G
Sbjct: 115 NCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK 174
Query: 108 PDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGN 167
P +TLN L+N GLC+ ++ +A L M+ G +P+ +TYG ++ C++G
Sbjct: 175 PTLITLNALVN-------GLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227
Query: 168 LSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA 227
++A+ L +KM E I K + YSIIID LCK+G +D A LF EM+ +G
Sbjct: 228 TALAMELLRKM-----EERKI-KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 281
Query: 228 VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLE 287
+++ TTLI GFC AG W++ L +M+ P+++ F+ +IDC K GK+ EA L +
Sbjct: 282 IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK 341
Query: 288 LMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL 347
MIQRG++PD TY SL+DG+C ++D A + M SKGC + ++NILINGYCK
Sbjct: 342 EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKAN 401
Query: 348 NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYN 407
+++ + L+R++ GV +TYNTL+ G + G+ A++LF EM V PD+ +Y
Sbjct: 402 LIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYK 461
Query: 408 ILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467
IL+DGLC N ++A+++F +E +K E I I+N +I G+C A ++D+AW+LF LP K
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 521
Query: 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKV 527
G+ P V TY+IMI GLC+KG L +A+ ME++G +PN T+N L+ L +K
Sbjct: 522 GVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKS 581
Query: 528 VELLHKMAEPERNLVPDDTTFSIVVDLLA 556
+L+ ++ ++ D +T +VVD+L+
Sbjct: 582 AKLIEEIKRCGFSV--DASTVKMVVDMLS 608
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 196/509 (38%), Positives = 290/509 (56%)
Query: 48 NCKSGIINLNEARYFFGYMTHMQPSPPISSFN-LLFGAVAKNRHYDAVISFYRKLVSIGL 106
NC L+ A M + P I + N LL G NR DAV S ++V +G
Sbjct: 124 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAV-SLVGQMVEMGY 182
Query: 107 LPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTG 166
PD T N LI+ GL NR EA L M+ G +PD++TYG ++NG C+ G
Sbjct: 183 QPDSFTFNTLIH-------GLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235
Query: 167 NLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP 226
++ +AL L KKM G E G++ Y+ IID+LC V+ A LF EM +GI P
Sbjct: 236 DIDLALSLLKKMEQGKIEPGVVI------YNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289
Query: 227 AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLL 286
VV +LI C G W + + L +M++ PN++TF+ +ID K GK+ EA L
Sbjct: 290 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 349
Query: 287 ELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKI 346
+ MI+R ++PD FTY+SL++G+C+ R+D A+ +F M SK C VV+YN LI G+CK
Sbjct: 350 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKA 409
Query: 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTY 406
V+E M L+R++ G+ +TY TL+ G FQA + AQ +F +M V PD+ TY
Sbjct: 410 KRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTY 469
Query: 407 NILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466
+IL+DGLC N V+ A+ +F L+ +K E I +N +I+G+CKAG++++ W+LF L
Sbjct: 470 SILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 529
Query: 467 KGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK 526
KG+ P VVTY+ M+ G CRKG E+A+ M++ G P+ T+NTL+ L++ +
Sbjct: 530 KGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAA 589
Query: 527 VVELLHKMAEPERNLVPDDTTFSIVVDLL 555
EL+ +M V D +T +V ++L
Sbjct: 590 SAELIREMRSCR--FVGDASTIGLVTNML 616
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 181/484 (37%), Positives = 284/484 (58%)
Query: 73 PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132
P +F+ L + + ++V +G PD +T+N L+N GLC+ +
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVN-------GLCLSGK 208
Query: 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTN 192
EA L M+ +G +P+ +TYG ++N C++G ++A+ L +KM E + K +
Sbjct: 209 EAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKME----ERNI--KLD 262
Query: 193 IFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFI 252
YSIIID LCK G +D A LF EM+ +GI ++ LI GFC AG W++ L
Sbjct: 263 AVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLR 322
Query: 253 EMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVG 312
+M+ PN++TF+V+ID K GK+ EA L + MI RG+ PD TY SL+DG+C
Sbjct: 323 DMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKEN 382
Query: 313 RIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYN 372
+D A ++ M SKGC + ++NILINGYCK +++ + L+R++ GV +TYN
Sbjct: 383 HLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYN 442
Query: 373 TLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMN 432
TL+ G + G+ A++LF EM V P++ TY IL+DGLC N ++A+++F +E +
Sbjct: 443 TLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKS 502
Query: 433 KFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKA 492
K E I I+N +I G+C A ++D+AW+LF LP KG+ P V TY+IMI GLC+KG L +A
Sbjct: 503 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 562
Query: 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVV 552
ME++G AP+ T+N L+ L + +K V+L+ ++ ++ D +T +V+
Sbjct: 563 ELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSV--DASTIKMVI 620
Query: 553 DLLA 556
D+L+
Sbjct: 621 DMLS 624
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 180/459 (39%), Positives = 264/459 (57%)
Query: 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL 113
I LN+A F M +P P I FN L A+ K + YD VIS +K+ +G+ D T
Sbjct: 64 IKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTF 123
Query: 114 NILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALR 173
NI+INCF C ++ A + M+ G PD +T G+L+NGFCR +S A+
Sbjct: 124 NIVINCF-------CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176
Query: 174 LHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233
L KMV Y K +I +Y+ IIDSLCK V+ A + F E++ +GI P VV T
Sbjct: 177 LVDKMVEIGY------KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230
Query: 234 LIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRG 293
L++G C + W + L +M+ PN++T++ ++D K GK+ EA L E M++
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290
Query: 294 LNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAM 353
++PD TY+SL++G CL RID A ++F M SKGC VVSYN LING+CK VE+ M
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350
Query: 354 SLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGL 413
L+R++ G+ +TYNTL+ G FQAG AQ+ F +M + + PD+ TYNIL+ GL
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410
Query: 414 CKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTV 473
C N +++A+ +F ++ + + I + +I G+CK G+++ AW LF L KGL P +
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDI 470
Query: 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFN 512
VTY+ M+ GLC KG L + M++ G N T +
Sbjct: 471 VTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS 509
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 192/509 (37%), Positives = 287/509 (56%)
Query: 48 NCKSGIINLNEARYFFGYMTHMQPSPPISSFN-LLFGAVAKNRHYDAVISFYRKLVSIGL 106
NC L+ A G M + P I + N LL G NR +AV + ++V +G
Sbjct: 108 NCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAV-ALVDQMVEMGY 166
Query: 107 LPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTG 166
PD +T L++ GL N+ EA L + M+ G +PD++TYG +ING C+ G
Sbjct: 167 QPDTVTFTTLVH-------GLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG 219
Query: 167 NLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP 226
+AL L KM G E ++ YS +IDSLCK VD A LF EM +GI P
Sbjct: 220 EPDLALNLLNKMEKGKIE------ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRP 273
Query: 227 AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLL 286
V ++LI C G W + + L +ML+ PN++TFN +ID K GK+ EA L
Sbjct: 274 DVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLF 333
Query: 287 ELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKI 346
+ MIQR ++P+ TYNSL++G+C+ R+D A++IF M SK C VV+YN LING+CK
Sbjct: 334 DEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA 393
Query: 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTY 406
V + M L+R + G+ +TY TL+ G FQA AQ +F +M V P++ TY
Sbjct: 394 KKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453
Query: 407 NILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466
N L+DGLCKN +++A+ +F L+ +K E I +N + +G+CKAG++++ W+LF L
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSL 513
Query: 467 KGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK 526
KG+ P V+ Y+ MI G C+KG E+A + M+++G P+ T+NTL+ L++ +
Sbjct: 514 KGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAA 573
Query: 527 VVELLHKMAEPERNLVPDDTTFSIVVDLL 555
EL+ +M D +T+ +V D+L
Sbjct: 574 SAELIKEMRSCR--FAGDASTYGLVTDML 600
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 188/507 (37%), Positives = 291/507 (57%)
Query: 49 CKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLP 108
C+ I+L A G M + P I + + L + ++ ++V +G P
Sbjct: 131 CRRSQISL--ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188
Query: 109 DFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNL 168
D +T LI+ GL + N+ EA L M+ G +P+++TYG ++NG C+ G+
Sbjct: 189 DTITFTTLIH-------GLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241
Query: 169 SVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAV 228
+AL L KM + E ++ IF+ IIDSLCK VD A LF EM+ +GI P V
Sbjct: 242 DLALNLLNKMEAAKIEADVV----IFN--TIIDSLCKYRHVDDALNLFKEMETKGIRPNV 295
Query: 229 VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLEL 288
V ++LI C G W + + L +M++ PNL+TFN +ID K GK EA L +
Sbjct: 296 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 355
Query: 289 MIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILN 348
MI+R ++PD FTYNSL++G+C+ R+D A+++F M SK C VV+YN LI G+CK
Sbjct: 356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415
Query: 349 VEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNI 408
VE+ L+R++ G+ +TY TL+ GLF G AQK+F +M V PD+ TY+I
Sbjct: 416 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 475
Query: 409 LIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKG 468
L+DGLC N +++A+++F ++ ++ + I I+ +I+G+CKAG++D+ W+LF L KG
Sbjct: 476 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 535
Query: 469 LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVV 528
+ P VVTY+ MI GLC K L++A L M+++G PN T+NTL+ L++ +
Sbjct: 536 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA 595
Query: 529 ELLHKMAEPERNLVPDDTTFSIVVDLL 555
EL+ +M V D +T +V ++L
Sbjct: 596 ELIREMRSCR--FVGDASTIGLVANML 620
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| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 184/512 (35%), Positives = 291/512 (56%)
Query: 48 NCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLL 107
NC L+ A G + + P FN L + + ++V +G
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK 190
Query: 108 PDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGN 167
P +TLN L+N GLC+ ++ +A L M+ G +P+ +TYG ++N C++G
Sbjct: 191 PTLITLNTLVN-------GLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQ 243
Query: 168 LSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA 227
++A+ L +KM E + K + YSIIID LCK+G +D A LF EM+ +G
Sbjct: 244 TALAMELLRKME----ERNI--KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 297
Query: 228 VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLE 287
++ TLI GFC AG W++ L +M+ PN++TF+V+ID K GK+ EA+ LL+
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357
Query: 288 LMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL 347
M+QRG+ P+ TYNSL+DG+C R++ A ++ M SKGC ++++NILINGYCK
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417
Query: 348 NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYN 407
+++ + L+R++ GV +TYNTL+ G Q+G+ A+KLF EM V PD+ +Y
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477
Query: 408 ILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467
IL+DGLC N +++A+++F +E +K E I I+ +I G+C A ++D+AW+LF LP K
Sbjct: 478 ILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLK 537
Query: 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKV 527
G+ Y+IMI LCRK L KA+ M + G AP+ +T+N L+ L ++ +
Sbjct: 538 GVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTA 597
Query: 528 VELLHKMAEPERNLVPDDTTFSIVVDLLAKDE 559
EL+ +M D +T +V+++L+ E
Sbjct: 598 AELIEEMKSS--GFPADVSTVKMVINMLSSGE 627
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| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
Identities = 182/508 (35%), Positives = 284/508 (55%)
Query: 48 NCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLL 107
NC L A G M + P I + + L ++ ++ ++ G
Sbjct: 124 NCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQ 183
Query: 108 PDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGN 167
P+ +T N LI+ GL + N+ EA L M+A G +PD++TYG ++NG C+ G+
Sbjct: 184 PNTVTFNTLIH-------GLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGD 236
Query: 168 LSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA 227
+A L KM G E G++ Y+ IID LCK +D A LF EM+ +GI P
Sbjct: 237 TDLAFNLLNKMEQGKLEPGVLI------YNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 290
Query: 228 VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLE 287
VV ++LI C G W + + L +M++ P++ TF+ +ID K GK+ EA L +
Sbjct: 291 VVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 350
Query: 288 LMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL 347
M++R ++P TY+SL++G+C+ R+D A+++F M SK C VV+YN LI G+CK
Sbjct: 351 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYK 410
Query: 348 NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYN 407
VEE M ++R++ G+ +TYN L+ GLFQAG AQ++F EM V P++ TYN
Sbjct: 411 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 470
Query: 408 ILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467
L+DGLCKN +++A+ +F L+ +K E I +N +I+G+CKAG++++ W+LF L K
Sbjct: 471 TLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK 530
Query: 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKV 527
G+ P VV Y+ MI G CRKG E+A+ M+++G PN +NTL+ L++
Sbjct: 531 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREAS 590
Query: 528 VELLHKMAEPERNLVPDDTTFSIVVDLL 555
EL+ +M D +T +V ++L
Sbjct: 591 AELIKEMRSC--GFAGDASTIGLVTNML 616
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023872001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (660 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 626 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-29 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-27 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-24 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 7e-29
Identities = 73/309 (23%), Positives = 139/309 (44%), Gaps = 2/309 (0%)
Query: 209 VDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNV 268
+D A + ++ G+ + TTLI +G + + +F EM++ G N+ TF
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512
Query: 269 MIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSM--HS 326
+ID + G++ +A G +M + + PDR +N+L+ G +D A ++ M +
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572
Query: 327 KGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGY 386
++ L+ V+ A +Y+ I ++ T Y ++ Q G +
Sbjct: 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632
Query: 387 AQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446
A ++D+MK V+PD ++ L+D + +A ++ + G ++ L+
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 447 GLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP 506
A A EL+ + L PTV T + +I LC +L KA + L M++ G P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 507 NVVTFNTLM 515
N +T++ L+
Sbjct: 753 NTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-27
Identities = 82/319 (25%), Positives = 147/319 (46%), Gaps = 8/319 (2%)
Query: 196 YSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEML 255
Y+ +I + K G VD E+F EM G+ V LI G AG + G + M
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 256 DLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRG--LNPDRFTYNSLMDGYCLVGR 313
+P+ + FN +I + G ++ A +L M ++PD T +LM G+
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 314 IDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNT 373
+D A+E++ +H K T Y I +N + + + A+S+Y + GV+ + ++
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 374 LLSGLFQAGQAGYAQKLF---DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLE 430
L+ AG AG K F + + ++ +Y+ L+ ++A++L+ ++
Sbjct: 655 LVDV---AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 431 MNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLE 490
K + N LI LC+ +L A E+ ++ + GL P +TYSI++ RK +
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 491 KANDFLLYMEKNGCAPNVV 509
D L +++G PN+V
Sbjct: 772 VGLDLLSQAKEDGIKPNLV 790
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-25
Identities = 132/541 (24%), Positives = 228/541 (42%), Gaps = 65/541 (12%)
Query: 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL- 113
L A Y FG M P + S+N+L G AK ++D + Y +++ G+ PD T
Sbjct: 136 ELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFP 191
Query: 114 NILINCFG--NKERGLCVE-------------------------NRIKEATWLFKNMIAF 146
+L C G + RG V + A +F M
Sbjct: 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM--- 248
Query: 147 GVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE 206
R D I++ +I+G+ G L L M + L++ T++ S + L E
Sbjct: 249 -PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC---ELLGDE 304
Query: 207 GLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTF 266
L +E+ + G V VC +LI + G+W E +F M + +++
Sbjct: 305 RL---GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSW 357
Query: 267 NVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHS 326
MI K G ++A LM Q ++PD T S++ +G +D ++
Sbjct: 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417
Query: 327 KGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGY 386
KG VV N LI Y K +++A+ ++ I + VI++ ++++GL +
Sbjct: 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNI----PEKDVISWTSIIAGLRLNNRCFE 473
Query: 387 AQKLFDEMKLYNVEPDLSTYNILIDGL--CKNNCVQEAVKLFHMLEMNKFEFGIEIF--N 442
A F +M L ++P+ T LI L C K H + + G + F N
Sbjct: 474 ALIFFRQMLL-TLKPNSVT---LIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPN 528
Query: 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502
L+D + GR++ AW F+ + VV+++I++ G GK A + M ++
Sbjct: 529 ALLDLYVRCGRMNYAWNQFNSHEKD-----VVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 503 GCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYH 562
G P+ VTF +L+ ++ ++ +E H M E + ++ P+ ++ VVDLL + K
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSM-EEKYSITPNLKHYACVVDLLGRAGKLT 642
Query: 563 E 563
E
Sbjct: 643 E 643
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-24
Identities = 96/397 (24%), Positives = 174/397 (43%), Gaps = 33/397 (8%)
Query: 71 PSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVE 130
+P +S+FN+L A ++ D + R + GL D LI+ C +
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST--------CAK 484
Query: 131 NRIKEATW-LFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYE----- 184
+ +A + +F M+ GV +V T+G LI+G R G ++ A + M S + +
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544
Query: 185 -NGLISKTNIFSYSIIIDSLCKE-GLVDKAKELFLEMKGRG--INPAVVVCTTLIHGFCC 240
N LIS C + G VD+A ++ EMK I+P + L+
Sbjct: 545 FNALISA-------------CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 241 AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFT 300
AG + ++ + + + + + ++ + G + A + + M ++G+ PD
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 301 YNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQII 360
+++L+D G +D A EI +G K VSY+ L+ N ++A+ LY I
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 361 SNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQ 420
S +R TV T N L++ L + Q A ++ EMK + P+ TY+IL+ + +
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 421 EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNA 457
+ L + + + + + C+ GLC R + A
Sbjct: 772 VGLDLLSQAKEDGIKPNLVMCRCIT-GLCLR-RFEKA 806
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 6e-22
Identities = 87/377 (23%), Positives = 152/377 (40%), Gaps = 19/377 (5%)
Query: 127 LCVENRIKEATWLFKNM-IAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYEN 185
L R +EA LF+ + TY L+ ++ ++ + S +E
Sbjct: 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156
Query: 186 GLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWE 245
+ + K G++ A+ LF EM R + T+I G AGN+
Sbjct: 157 DQYMMNRVLLMHV------KCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYR 206
Query: 246 EVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLM 305
E LF EM + G TF VM+ G L +++ G+ D F +L+
Sbjct: 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266
Query: 306 DGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVR 365
D Y G I+ AR +F M K T V++N ++ GY EEA+ LY ++ +GV
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322
Query: 366 QTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKL 425
T++ ++ + +A++ + D+ L+D K +++A +
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382
Query: 426 FHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR 485
F + + +N LI G GR A E+F ++ +G+ P VT+ ++
Sbjct: 383 FDRMPRKN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438
Query: 486 KGKLEKANDFLLYMEKN 502
G E+ + M +N
Sbjct: 439 SGLSEQGWEIFQSMSEN 455
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 2e-20
Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 8/264 (3%)
Query: 257 LGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDT 316
L P L TFN+++ I+ A +L L+ + GL D Y +L+ G++D
Sbjct: 431 LIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 317 AREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLS 376
E+F M + G + V ++ LI+G + V +A Y + S V+ + +N L+S
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 377 GLFQAGQAGYAQKLFD---EMK--LYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEM 431
GQ+G + FD EMK + ++PD T L+ V A +++ M+
Sbjct: 551 A---CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607
Query: 432 NKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491
+ E++ ++ + G D A ++ + +KG+ P V +S ++ G L+K
Sbjct: 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
Query: 492 ANDFLLYMEKNGCAPNVVTFNTLM 515
A + L K G V++++LM
Sbjct: 668 AFEILQDARKQGIKLGTVSYSSLM 691
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 9e-19
Identities = 119/529 (22%), Positives = 216/529 (40%), Gaps = 92/529 (17%)
Query: 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLN-IL---INCFGNKERGLCV 129
P S+++ L A + V + Y + S G PD +N +L + C G+
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC------GM-- 173
Query: 130 ENRIKEATWLFKNMIAFGVRPD--VITYGTLINGFCRTGNLSVALRLHKKM--VSGDYEN 185
+ +A LF M P+ + ++GT+I G GN A L ++M D E
Sbjct: 174 ---LIDARRLFDEM------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224
Query: 186 -----------GLIS------------KT----NIFSYSIIIDSLCKEGLVDKAKELFLE 218
GL S KT + F +ID K G ++ A+ +F
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284
Query: 219 MKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGK 278
M + V +++ G+ G EE L+ EM D G + TF++MI +
Sbjct: 285 MPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
Query: 279 INEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNI 338
+ A +I+ G D +L+D Y GR++ AR +F M K ++S+N
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNA 396
Query: 339 LINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEM-KLY 397
LI GY +A+ ++ ++I+ GV +T+ +LS +G + ++F M + +
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456
Query: 398 NVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE-----FGIEIFNCLIDGLCKAG 452
++P Y +I+ L + + EA + M+ F+ + + C I + G
Sbjct: 457 RIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513
Query: 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC----APNV 508
RL A +L+ P+K + Y ++++ G+ +A + +++ G A
Sbjct: 514 RL-AAEKLYGMGPEK-----LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567
Query: 509 VTFNTLMHGFLQNNKT--------SKVVELLHKMAE-----PERNLVPD 544
+ H F ++ K+ EL+ +++E E L+PD
Sbjct: 568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPD 616
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 1e-18
Identities = 79/336 (23%), Positives = 139/336 (41%), Gaps = 70/336 (20%)
Query: 140 FKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSII 199
+ M V PD IT ++++ G+L V ++LH+ L + + SY ++
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE----------LAERKGLISYVVV 426
Query: 200 IDSL------CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIE 253
++L CK +DKA E+F + V+ T++I G E F +
Sbjct: 427 ANALIEMYSKCKC--IDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 254 MLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGR 313
ML L +PN +T + + G + + +++ G+ D F N+L+D Y GR
Sbjct: 481 ML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 314 IDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNT 373
++ A F S + VVS+NI
Sbjct: 540 MNYAWNQFNS-----HEKDVVSWNI----------------------------------- 559
Query: 374 LLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK 433
LL+G G+ A +LF+ M V PD T+ L+ ++ V + ++ FH +E
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK- 618
Query: 434 FEFGI----EIFNCLIDGLCKAGRLDNAWELFHKLP 465
+ I + + C++D L +AG+L A+ +K+P
Sbjct: 619 --YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-17
Identities = 100/447 (22%), Positives = 174/447 (38%), Gaps = 73/447 (16%)
Query: 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCR----------------TGNL 168
R LC ++++A L ++M V D Y L C + +
Sbjct: 59 RALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHP 117
Query: 169 SVALRLHKKMVS-----GD-----YENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLE 218
S+ +RL M+S G+ Y G + + ++FS+++++ K G D+A L+
Sbjct: 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR 177
Query: 219 MKGRGINPAVVVCTTLIHGFCCAG--NW-------------------EEVNGLFIEM--- 254
M G+ P V ++ C G + + VN L I M
Sbjct: 178 MLWAGVRPDVYTFPCVLR--TCGGIPDLARGREVHAHVVRFGFELDVDVVNAL-ITMYVK 234
Query: 255 ----------LDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSL 304
D PR + +++N MI + G+ E L M + ++PD T S+
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 305 MDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGV 364
+ L+G RE+ + G V N LI Y + + EA ++ S
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA----EKVFSRME 350
Query: 365 RQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK 424
+ +++ ++SG + G A + + M+ NV PD T ++ + VK
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 425 LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLC 484
L + E + + N LI+ K +D A E+FH +P+K V++++ +I GL
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLR 466
Query: 485 RKGKLEKANDFLLYMEKNGCAPNVVTF 511
+ +A F M PN VT
Sbjct: 467 LNNRCFEALIFFRQM-LLTLKPNSVTL 492
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 3e-17
Identities = 99/437 (22%), Positives = 177/437 (40%), Gaps = 83/437 (18%)
Query: 109 DFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNL 168
D ++ N +I+ G E G C E LF M V PD++T ++I+ G+
Sbjct: 252 DCISWNAMIS--GYFENGEC-----LEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 169 SVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAV 228
+ +H +V + ++ + +I G +A+++F M+ +
Sbjct: 305 RLGREMHGYVVKTGFA------VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA---- 354
Query: 229 VVCTTLIHGFCCAGNWEEVNGLFIEMLDL-------GPRPNLLTF-NVMIDCLCKGGKIN 280
V T +I G+ E NGL + L+ P+ +T +V+ C C G ++
Sbjct: 355 VSWTAMISGY-------EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG-DLD 406
Query: 281 EANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILI 340
L EL ++GL N+L++ Y ID A E+F ++ K V+S+ +I
Sbjct: 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSII 462
Query: 341 NGYCKILNVEEAMSLYRQIISNGVRQTVITY----------------------------- 371
G EA+ +RQ++ ++ +T
Sbjct: 463 AGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521
Query: 372 ------NTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKL 425
N LL + G+ YA F+ E D+ ++NIL+ G + AV+L
Sbjct: 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVEL 576
Query: 426 FH-MLEMNKFEFGIEI-FNCLIDGLCKAGRLDNAWELFHKLPQK-GLVPTVVTYSIMIHG 482
F+ M+E E+ F L+ ++G + E FH + +K + P + Y+ ++
Sbjct: 577 FNRMVESG--VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634
Query: 483 LCRKGKLEKANDFLLYM 499
L R GKL +A +F+ M
Sbjct: 635 LGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 6e-17
Identities = 69/320 (21%), Positives = 124/320 (38%), Gaps = 58/320 (18%)
Query: 148 VRPDVITYGTLINGFCRTGNLSVALRLHKKM--------------------VSGDYENGL 187
+ PD IT G L+ G + A +++ + GD++ L
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 188 ----------ISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG 237
+ +F +S ++D G +DKA E+ + + +GI V ++L+ G
Sbjct: 635 SIYDDMKKKGVKPDEVF-FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-G 692
Query: 238 FCC-AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNP 296
C A NW++ L+ ++ + RP + T N +I LC+G ++ +A +L M + GL P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 297 DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK----------- 345
+ TY+ L+ D ++ G K +V + G C
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLRRFEKACALGE 811
Query: 346 -----------ILN--VEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFD 392
I N A+ +YR+ IS G T+ + +L L A +L +
Sbjct: 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIE 871
Query: 393 EMKLYNVEPDLSTYNILIDG 412
+ + S + L+DG
Sbjct: 872 NLGISADSQKQSNLSTLVDG 891
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 1e-16
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518
P VVTY+ +I G C+KGK+E+A M+K G PNV T++ L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.4 bits (179), Expect = 3e-16
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR 485
+N LIDG CK G+++ A +LF+++ ++G+ P V TYSI+I GLC+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 5e-16
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 296 PDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK 345
PD TYN+L+DGYC G+++ A ++F M +G K V +Y+ILI+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 8e-16
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK 415
V+TYNTL+ G + G+ A KLF+EMK ++P++ TY+ILIDGLCK
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 1e-14
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 261 PNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYC 309
P+++T+N +ID CK GK+ EA L M +RG+ P+ +TY+ L+DG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 2e-13
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 192 NIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFC 239
++ +Y+ +ID CK+G V++A +LF EMK RGI P V + LI G C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 2e-12
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 226 PAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCK 275
P VV TLI G+C G EE LF EM G +PN+ T++++ID LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-11
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 6/56 (10%)
Query: 150 PDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205
PDV+TY TLI+G+C+ G + AL+L +M + G+ K N+++YSI+ID LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK----KRGI--KPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-10
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 506 PNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAK 557
P+VVT+NTL+ G+ + K + ++L ++M +R + P+ T+SI++D L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 108 PDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCR 164
PD +T N LI+ G C + +++EA LF M G++P+V TY LI+G C+
Sbjct: 1 PDVVTYNTLID-------GYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (128), Expect = 2e-09
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 467 KGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYME 500
KGL P VVTY+ +I GLCR G++++A + L ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 2e-09
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 146 FGVRPDVITYGTLINGFCRTGNLSVALRLHKKMV 179
G++PDV+TY TLI+G CR G + A+ L +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 75/403 (18%), Positives = 140/403 (34%), Gaps = 125/403 (31%)
Query: 273 LCKGGKINEANGLLELMIQRGLNPDRFTY------------------------------- 301
LC G++ +A LLE M + + D Y
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 302 ----NSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYR 357
N+++ + G + A +F M + + S+N+L+ GY K +EA+ LY
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYH 176
Query: 358 QIISNGVRQTVITY-----------------------------------NTLLSGLFQAG 382
+++ GVR V T+ N L++ + G
Sbjct: 177 RMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236
Query: 383 QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK--------- 433
A+ +FD M D ++N +I G +N E ++LF +
Sbjct: 237 DVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
Query: 434 --------------------------FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467
F + + N LI G A ++F ++ K
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
Query: 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKV 527
V+++ MI G + G +KA + ME++ +P+ +T +++
Sbjct: 353 ----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408
Query: 528 VELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKS 570
V+ LH++AE + ++ +V + L E Y +C + K+
Sbjct: 409 VK-LHELAERKGL-----ISYVVVANALI--EMYSKCKCIDKA 443
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 1e-08
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 398 NVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEM 431
++PD+ TYN LIDGLC+ V EAV+L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLD--EM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 9e-08
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 292 RGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSM 324
+GL PD TYN+L+DG C GR+D A E+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 1e-07
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 192 NIFSYSIIIDSLCKEGLVDKAKELFLEMK 220
++ +Y+ +ID LC+ G VD+A EL EM+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 4e-07
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 327 KGCKHTVVSYNILINGYCKILNVEEAMSLYRQ 358
KG K VV+YN LI+G C+ V+EA+ L +
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV 508
VTY+ +I GLC+ G++E+A + M++ G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-07
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 299 FTYNSLMDGYCLVGRIDTAREIFLSMHSKGCK 330
TYN+L+DG C GR++ A E+F M +G +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 9e-07
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 194 FSYSIIIDSLCKEGLVDKAKELFLEMKGRGI 224
+Y+ +I CK G +++A ELF EMK +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 1e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 502 NGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534
G P+VVT+NTL+ G + + + VELL +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 194 FSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP 226
+Y+ +ID LCK G V++A ELF EMK RGI P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 265 TFNVMIDCLCKGGKINEANGLLELMIQRGLNPD 297
T+N +ID LCK G++ EA L + M +RG+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-06
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 441 FNCLIDGLCKAGRLDNAWELFHK 463
+N LIDGLC+AGR+D A EL +
Sbjct: 10 YNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTV 473
+N LIDGLCKAGR++ A ELF ++ ++G+ P V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 334 VSYNILINGYCKILNVEEAMSLYRQIISNGV 364
V+YN LI+GYCK +EEA+ L++++ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 8e-06
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 258 GPRPNLLTFNVMIDCLCKGGKINEANGLLELM 289
G +P+++T+N +ID LC+ G+++EA LL+ M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGC 504
VTY+ +I G C+ GKLE+A + M++ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 362 NGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMK 395
G++ V+TYNTL+ GL +AG+ A +L DEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 299 FTYNSLMDGYCLVGRIDTAREIFLSMHSKGC 329
TYNSL+ GYC G+++ A E+F M KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 8e-05
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 265 TFNVMIDCLCKGGKINEANGLLELMIQRGL 294
T+N +I CK GK+ EA L + M ++G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 9e-05
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 334 VSYNILINGYCKILNVEEAMSLYRQIISNGVR 365
V+YN LI+G CK VEEA+ L++++ G+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 9e-05
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 405 TYNILIDGLCKNNCVQEAVKLFHMLEMNKFE 435
TYN LIDGLCK V+EA++LF ++ E
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 222 RGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEM 254
+G+ P VV TLI G C AG +E L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 404 STYNILIDGLCKNNCVQEAVKLFH-MLEMN 432
TYN LI G CK ++EA++LF M E
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGL 469
+N LI G CKAG+L+ A ELF ++ +KG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP 471
+E +N L+ L KAG D A + ++ GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 229 VVCTTLIHGFCCAGNWEEVNGLFIEMLDLG 258
V +LI G+C AG EE LF EM + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 153 ITYGTLINGFCRTGNLSVALRLHKKMVS 180
+TY +LI+G+C+ G L AL L K+M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 229 VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPN 262
V TLI G C AG EE LF EM + G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 63 FGYMTHMQPS---PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINC 119
F + + S++ L GA + +++ + Y + SI L P T+N LI
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT- 727
Query: 120 FGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRL 174
LC N++ +A + M G+ P+ ITY L+ R + V L L
Sbjct: 728 ------ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 509 VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD 545
VT+NTL+ G + + + +EL +M ER + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM--KERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 153 ITYGTLINGFCRTGNLSVALRLHKKMVS 180
+TY TLI+G C+ G + AL L K+M
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKE 28
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 6/33 (18%), Positives = 20/33 (60%)
Query: 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVR 365
+ +YN L+ K + + A+++ ++ ++G++
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 73 PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGN 122
P + ++N L K + + + ++ G+ P+ T +ILI+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 265 TFNVMIDCLCKGGKINEANGLLELMIQRGLNP 296
T+N ++ L K G + A +LE M GL P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPD 402
+TYNTL+ GL +AG+ A +LF EMK +EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNV 399
+TYN+L+SG +AG+ A +LF EMK V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 626 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.83 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.68 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.54 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.45 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.45 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.43 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.35 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.34 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.34 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.25 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.22 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.21 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.11 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.1 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.09 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.07 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.06 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.04 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.03 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.02 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.98 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.94 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.93 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.91 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.9 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.79 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.77 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.75 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.72 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.69 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.67 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.67 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.63 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.61 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.59 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.57 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.56 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.4 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.34 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.33 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.26 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.15 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.01 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.98 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.97 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.96 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.95 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.94 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.93 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.92 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.91 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.87 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.83 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.83 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.78 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.78 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.78 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.76 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.76 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.74 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.73 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.73 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.72 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.72 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.72 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.67 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.65 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.63 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.6 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.58 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.56 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.54 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.53 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.46 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.45 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.43 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.42 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.39 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.37 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.35 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.35 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.33 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.33 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.31 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.3 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.25 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.23 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.19 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.14 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.1 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.07 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.05 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.97 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.95 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.94 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.91 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.9 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.88 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.86 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.84 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.78 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.72 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.68 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.64 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.6 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.59 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.56 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.55 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.5 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.43 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.4 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.4 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.36 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.32 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.27 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.22 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.17 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.17 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.14 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.08 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.06 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.92 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.82 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.81 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.75 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.73 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.66 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.56 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.41 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.36 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.33 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.31 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.23 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.18 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.09 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.08 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.04 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.98 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.92 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.82 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.68 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.61 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.58 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.43 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.31 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.26 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.22 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.13 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.9 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.81 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.8 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.77 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.34 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.34 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.34 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.18 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.05 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.94 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.78 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.74 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.45 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.44 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.36 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.3 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.15 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.14 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.93 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.83 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.77 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.45 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.32 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.01 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.82 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.49 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.4 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.28 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.2 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.03 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.5 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.16 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.08 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.73 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.66 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.34 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.88 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.65 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.61 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.57 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.4 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.38 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.3 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.24 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.94 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.76 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.69 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.54 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.16 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.11 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 85.33 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 85.12 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.1 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 84.61 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.2 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.06 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 83.39 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.94 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.61 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.13 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.87 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.83 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.66 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 81.65 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.45 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.27 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.15 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-71 Score=601.02 Aligned_cols=545 Identities=23% Similarity=0.372 Sum_probs=503.6
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINC 119 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 119 (626)
..+.++..+++.| +++.|.++|++| +.||+.+|+.++.+|.+.|++++|+.+|++|...|+.||..+|+.++.+
T Consensus 123 ~~n~li~~~~~~g--~~~~A~~~f~~m----~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 123 LGNAMLSMFVRFG--ELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred HHHHHHHHHHhCC--ChHHHHHHHhcC----CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 3467788888887 999999999999 5689999999999999999999999999999999999999999999988
Q ss_pred hh----------------------------hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH
Q 040279 120 FG----------------------------NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVA 171 (626)
Q Consensus 120 ~~----------------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 171 (626)
|+ .++.+|++.|++++|..+|++|. .||..+|+.+|.+|++.|++++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHH
Confidence 74 56788899999999999999986 46888999999999999999999
Q ss_pred HHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 040279 172 LRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLF 251 (626)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 251 (626)
+++|++|...+ +.||..+|+.++.++.+.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|
T Consensus 273 l~lf~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 273 LELFFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred HHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999888 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 040279 252 IEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKH 331 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (626)
++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.+
T Consensus 347 ~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 347 SRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 9985 468889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|..+|++|.. +++||..||+.++.
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 999999999999999999999999998864 5788999999999999999999999999986 58999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
+|++.|.++.+.+++..+.+.|+.++..+++.++++|++.|++++|.++|+.+ .||..+|++++.+|++.|+.++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999998 4799999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ ..|+.|+..+|..++++|.+.|++++|.+++++|
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~-~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE-KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH-HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999994 3899999999999999999999999999999998
Q ss_pred HhhccccccccCCc--hhhhhhhheeccCCccch----hccccCCCCCCchhHHHHHHh
Q 040279 572 YRACLYVTIFQPSS--LGSMIGCTVRLMPQPEMS----DTLGDDGDGNAGPIILSAVLL 624 (626)
Q Consensus 572 ~~~~~~~~~~~p~~--~~~l~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~ 624 (626)
+..|+. |.+++++| +.+++.+.+ ++++++.|+++++|++++.++
T Consensus 652 --------~~~pd~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 652 --------PITPDPAVWGALLNAC-RIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred --------CCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 567776 99999987 889997765 567789999999999998775
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-66 Score=549.78 Aligned_cols=519 Identities=16% Similarity=0.253 Sum_probs=486.1
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040279 39 TQLNEFLHENCKSGIINLNEARYFFGYMTHMQP-SPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILI 117 (626)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 117 (626)
.....++..+++.| ++++|+++|++|.+.+. .++...++.++.+|.+.|.+++|..+|+.|. .|+..+|+.+|
T Consensus 371 ~~~~~~y~~l~r~G--~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL 444 (1060)
T PLN03218 371 PEYIDAYNRLLRDG--RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLM 444 (1060)
T ss_pred hHHHHHHHHHHHCc--CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHH
Confidence 33556667788876 99999999999998875 4677788889999999999999999999997 49999999998
Q ss_pred HhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHH
Q 040279 118 NCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYS 197 (626)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (626)
. ++++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+ +.||..+|+
T Consensus 445 ~-------a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~PdvvTyn 511 (1060)
T PLN03218 445 S-------VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEANVHTFG 511 (1060)
T ss_pred H-------HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHH
Confidence 6 557889999999999999999999999999999999999999999999999999988 789999999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHh
Q 040279 198 IIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLD--LGPRPNLLTFNVMIDCLCK 275 (626)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~ 275 (626)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 6789999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 040279 276 GGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSL 355 (626)
Q Consensus 276 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 355 (626)
.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 356 YRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE 435 (626)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (626)
+++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh----c-------------------CCHHHH
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR----K-------------------GKLEKA 492 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A 492 (626)
||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999866432 1 224679
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..+|++|.+.|+.||..||+.++.++...+..+.+..+++.|.. .+..|+..+|..+++.+.+. .++|..++++|.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~--~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI--SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc--CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 99999999999999999999999888889999999999999887 67888999999999987332 368999999999
Q ss_pred hhcccccc
Q 040279 573 RACLYVTI 580 (626)
Q Consensus 573 ~~~~~~~~ 580 (626)
..++.+..
T Consensus 908 ~~Gi~p~~ 915 (1060)
T PLN03218 908 SLGVVPSV 915 (1060)
T ss_pred HcCCCCCc
Confidence 88776644
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-64 Score=532.14 Aligned_cols=499 Identities=21% Similarity=0.308 Sum_probs=464.7
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCC
Q 040279 71 PSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLL-PDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVR 149 (626)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (626)
+.++...|..+...+.+.|++++|+++|++|.+.|+. ++..+++.++. .+.+.|.+++|..+|+.|..
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~-------~~~~~g~~~eAl~lf~~M~~---- 434 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFK-------ACKKQRAVKEAFRFAKLIRN---- 434 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-------HHHHCCCHHHHHHHHHHcCC----
Confidence 4457788999999999999999999999999998864 55566666654 56778999999999999874
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcc
Q 040279 150 PDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVV 229 (626)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 229 (626)
|+..+|+.++.+|++.|+++.|.++|++|.+.+ ..||..+|+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 899999999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCHhhHHHHHHH
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQ--RGLNPDRFTYNSLMDG 307 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~ 307 (626)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 5789999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 040279 308 YCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYA 387 (626)
Q Consensus 308 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 387 (626)
|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 040279 388 QKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467 (626)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (626)
.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...++.|+..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCH
Q 040279 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ----N-------------------NKT 524 (626)
Q Consensus 468 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~ 524 (626)
|+.||..+|+.++.+|.+.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 99999999999999999999999999999999999999999999999876432 1 234
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCc--hhhhhhhh
Q 040279 525 SKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSS--LGSMIGCT 593 (626)
Q Consensus 525 ~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--~~~l~~~~ 593 (626)
++|..+|++|++ .|+.||..+|..++.++.+.+..+.+...++.+... +..|+. +.+++..+
T Consensus 829 ~~Al~lf~eM~~--~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-----~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 829 SWALMVYRETIS--AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-----ADSQKQSNLSTLVDGF 892 (1060)
T ss_pred HHHHHHHHHHHH--CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-----CCCcchhhhHHHHHhh
Confidence 689999999999 999999999999999998999999999999887321 233332 66676654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=547.60 Aligned_cols=551 Identities=21% Similarity=0.266 Sum_probs=456.5
Q ss_pred CChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 040279 36 SPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNI 115 (626)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 115 (626)
++..+.+.++..+++.| ++++|..+|+.+...+..|+..+|..++..+.+.+.++.|..++..+.+.|..++...++.
T Consensus 49 ~~~~~~n~~i~~l~~~g--~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 49 SSTHDSNSQLRALCSHG--QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cchhhHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 34555788899999987 8999999999999888778888887777777777777777777777776666666666666
Q ss_pred HHHhhh------------------------hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH
Q 040279 116 LINCFG------------------------NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVA 171 (626)
Q Consensus 116 ll~~~~------------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 171 (626)
++.+|+ .++.+|++.|++++|+.+|++|...|+.||..||+.++.+|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 666543 44567788888999999999998888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 040279 172 LRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLF 251 (626)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 251 (626)
.+++..+.+.+ ..++..+++.|+.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|+++|
T Consensus 207 ~~~~~~~~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 207 REVHAHVVRFG------FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred HHHHHHHHHcC------CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 88888888877 678888999999999999999999999999874 58889999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 040279 252 IEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKH 331 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (626)
++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.. |
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~ 352 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----K 352 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998864 5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
|..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.|+++.|.++++.+.+.|+.|+..+|+.++.
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
+|++.|++++|.++|++|. .+|..+|+.++.+|.+.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.
T Consensus 433 ~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 9999999999999888876 34667788888888888888888888888765 467777777666655555544444
Q ss_pred HHHHHHHHHHCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 040279 492 ANDFLLYMEKNGC------------------------------APNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNL 541 (626)
Q Consensus 492 A~~~~~~~~~~~~------------------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 541 (626)
+.+++..+.+.|+ .||..+|+.++.+|.+.|+.++|.++|++|.+ .|+
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~--~g~ 585 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVE--SGV 585 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--cCC
Confidence 4444444444332 56888999999999999999999999999998 899
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCc--hhhhhhhheeccCCccchhccccCCCCCC
Q 040279 542 VPDDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSS--LGSMIGCTVRLMPQPEMSDTLGDDGDGNA 614 (626)
Q Consensus 542 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 614 (626)
.||..||..++.+|.+.|++++|.++|+.|.+. ....|+. +..++..+.+ .|+.+.|+.+++.-|-.+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~----~gi~P~~~~y~~lv~~l~r-~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK----YSITPNLKHYACVVDLLGR-AGKLTEAYNFINKMPITP 655 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH----hCCCCchHHHHHHHHHHHh-CCCHHHHHHHHHHCCCCC
Confidence 999999999999999999999999999999621 1456765 6777766534 566666666666444333
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=504.75 Aligned_cols=472 Identities=19% Similarity=0.273 Sum_probs=427.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 73 PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIG-LLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD 151 (626)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (626)
.+..+|+.++..+.+.|++++|+.+|+.|...+ ..||..+|+.++.+ +.+.++++.|.+++..|.+.|+.||
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a-------~~~~~~~~~a~~l~~~m~~~g~~~~ 157 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEA-------CIALKSIRCVKAVYWHVESSGFEPD 157 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-------HHhCCCHHHHHHHHHHHHHhCCCcc
Confidence 456689999999999999999999999998754 67899999998864 4667888999999999999999999
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchH
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVC 231 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (626)
..+++.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 227 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence 9999999999999999999999999984 467889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLV 311 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 311 (626)
+.++.++...|..+.+.+++..+.+.|..||..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999998863 5888999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 040279 312 GRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLF 391 (626)
Q Consensus 312 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (626)
|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-CCCC
Q 040279 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ-KGLV 470 (626)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 470 (626)
++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|.+ .|+.
T Consensus 384 ~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 9986 4788899999999999999999999999999999999999999999999999999999999999976 6889
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFS 549 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~ 549 (626)
|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+.+.|..+++++.+ +.|+ ..+|.
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~----~~p~~~~~y~ 532 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG----MGPEKLNNYV 532 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC----CCCCCCcchH
Confidence 99999999999999999999999988765 4689999999999999999999999999999877 6774 67899
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhhcc
Q 040279 550 IVVDLLAKDEKYHECSAVSKSSYRACL 576 (626)
Q Consensus 550 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 576 (626)
.++++|.+.|++++|.++++.|.+.++
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999987765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=498.47 Aligned_cols=471 Identities=18% Similarity=0.305 Sum_probs=446.4
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQ-PSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILIN 118 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 118 (626)
.++.++..+++.| ++++|+++|+.+...+ ..||..+|+.++.++.+.++++.|..++..|.+.|+.||..+++.++.
T Consensus 89 ~~~~~i~~l~~~g--~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACG--RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 6788899999887 9999999999998765 468999999999999999999999999999999999999999999984
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHH
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSI 198 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (626)
.|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.+ ..|+..+|+.
T Consensus 167 -------~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~p~~~t~~~ 229 (697)
T PLN03081 167 -------MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG------SDAEPRTFVV 229 (697)
T ss_pred -------HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCChhhHHH
Confidence 6789999999999999996 4799999999999999999999999999999988 7899999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 040279 199 IIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGK 278 (626)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 278 (626)
++.++.+.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~ 305 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGY 305 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999995 4589999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 040279 279 INEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQ 358 (626)
Q Consensus 279 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 358 (626)
+++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcC
Q 040279 359 IISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEM-NKFEFG 437 (626)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 437 (626)
|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.|+
T Consensus 386 m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 386 MPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred CCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 964 689999999999999999999999999999999999999999999999999999999999999985 689999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
..+|+.++++|++.|++++|.+++++|. +.|+..+|++++.+|...|+++.|..+++++.+.+ +.+..+|..++..
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~ 537 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNL 537 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHH
Confidence 9999999999999999999999999874 57999999999999999999999999999998653 3346799999999
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCC
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVP 543 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p 543 (626)
|.+.|++++|.++++.|.+ .|+..
T Consensus 538 y~~~G~~~~A~~v~~~m~~--~g~~k 561 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKR--KGLSM 561 (697)
T ss_pred HHhCCCHHHHHHHHHHHHH--cCCcc
Confidence 9999999999999999998 77653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=311.57 Aligned_cols=534 Identities=14% Similarity=0.084 Sum_probs=349.4
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
++++|...++.++...+. +...+..++..+.+.|++++|..+|+++.+. .|+....... ++..+...|+++
T Consensus 344 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~------l~~~~~~~~~~~ 414 (899)
T TIGR02917 344 RVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQ------LGISKLSQGDPS 414 (899)
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHH------HHHHHHhCCChH
Confidence 555555555555444332 4445555555555555555555555555543 2332221111 123445556666
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKE 214 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (626)
+|+..++.+.+.. +........++..+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+
T Consensus 415 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 415 EAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-------PDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred HHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 6666666655543 1123344445555666666666666666665543 4556666777777777777777777
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040279 215 LFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL 294 (626)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 294 (626)
.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.++. +..++..+...+...|+.++|...++++.+.+
T Consensus 487 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 563 (899)
T TIGR02917 487 AFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN- 563 (899)
T ss_pred HHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777766543 334455666667777777777777777777665432 55666777777777777777777777776653
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 040279 295 NPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTL 374 (626)
Q Consensus 295 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 374 (626)
+.+...+..++..+...|++++|..+++.+.... +.+...|..+..++...|++++|+..|+++.+.. +.+...+..+
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 641 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL 641 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 3345566667777777777777777777776653 3356677777777777888888888887777653 3355666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 040279 375 LSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRL 454 (626)
Q Consensus 375 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 454 (626)
...+...|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.... +.+...+..+...+...|++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 777777788888888887777643 4456677777777778888888888887777665 45666777777778888888
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
++|.+.|+++... .|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++
T Consensus 720 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 8888888887775 3455667777778888888888888888887763 556677777788888888888888888888
Q ss_pred hcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchhhhhhhheeccCCc----cchhccccC
Q 040279 535 AEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLGSMIGCTVRLMPQP----EMSDTLGDD 609 (626)
Q Consensus 535 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~----~~~~~~~~~ 609 (626)
++ ..| +...+..++..+...|+ .+|.++++++... .+..|..+.. ++.+....++. +..+++++.
T Consensus 797 ~~----~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 797 VK----KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL----APNIPAILDT-LGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HH----hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh----CCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77 444 56677788888888888 7788888887532 1222332322 23333444543 334677788
Q ss_pred CCCCCchhHHHHHHhh
Q 040279 610 GDGNAGPIILSAVLLI 625 (626)
Q Consensus 610 ~p~~~~~~~~~~~~~~ 625 (626)
.|+++..+..++.+++
T Consensus 867 ~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 867 APEAAAIRYHLALALL 882 (899)
T ss_pred CCCChHHHHHHHHHHH
Confidence 8888888777776653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=305.54 Aligned_cols=470 Identities=13% Similarity=0.065 Sum_probs=251.9
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
.+...|++++|...++.+.... +.+...+..+...+.+.|++++|.+.|+++.+.+ +.+...+..+...+..
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-------PENAAARTQLGISKLS 409 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHh
Confidence 3444455555555555544432 2234444455555555555555555555554433 2233334444444444
Q ss_pred cCCcchHHHHHHHHhhCC---------------------------------CCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 040279 206 EGLVDKAKELFLEMKGRG---------------------------------INPAVVVCTTLIHGFCCAGNWEEVNGLFI 252 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 252 (626)
.|++++|.+.++.+.+.. .+.+..++..+...+...|++++|.+.|+
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444444444444443321 12234445555555555555555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 040279 253 EMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHT 332 (626)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 332 (626)
++.+..+. +...+..+...+...|++++|...++.+.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +.+
T Consensus 490 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 566 (899)
T TIGR02917 490 KALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQE 566 (899)
T ss_pred HHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 55443221 33344444555555555555555555555442 2234445555555555555555555555554443 223
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG 412 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (626)
...+..++..+...|++++|..+++++.+. .+.+...|..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 444555555556666666666666665543 23345556666666666666666666666665432 3344455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040279 413 LCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 492 (626)
+.+.|++++|..+++++.... +.+...+..++..+...|++++|.++++.+.+.+ +++...+..++..+...|++++|
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 666666666666666655443 3445566666666666666666666666665543 33455566666666666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.+.|+++.+. .|+..++..++.++.+.|++++|.+.++++.+ ..| +...+..++..+.+.|++++|.+.|+++
T Consensus 723 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 723 IQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK----THPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 7777766664 34445566666666677777777777777665 334 4556666677777777777777777776
Q ss_pred HhhccccccccCCc---hhhhhhhheeccCC---ccchhccccCCCCCCchhHHHHHHh
Q 040279 572 YRACLYVTIFQPSS---LGSMIGCTVRLMPQ---PEMSDTLGDDGDGNAGPIILSAVLL 624 (626)
Q Consensus 572 ~~~~~~~~~~~p~~---~~~l~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~ 624 (626)
.. ..|+. +..+... ....++ .+..++++++.|+++..+..++.++
T Consensus 797 ~~-------~~p~~~~~~~~l~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 797 VK-------KAPDNAVVLNNLAWL-YLELKDPRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HH-------hCCCCHHHHHHHHHH-HHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 52 23332 2222111 122222 3334566667777776666555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-25 Score=247.69 Aligned_cols=546 Identities=12% Similarity=0.030 Sum_probs=356.2
Q ss_pred CCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 040279 35 SSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLN 114 (626)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 114 (626)
+.+.+.+...+...-..+ +.+.|.+.++++....|. ++.++..++..+.+.|+.++|...++++.+. .|+...+.
T Consensus 25 ~~~~~~Ll~q~~~~~~~~--~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~ 99 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATH--REDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYR 99 (1157)
T ss_pred CCHHHHHHHHHHHHHhhC--ChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHH
Confidence 344444555555555554 999999999999988776 7888999999999999999999999999987 56654443
Q ss_pred HHHHhh----------hhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 040279 115 ILINCF----------GNKERGLCVENRIKEATWLFKNMIAFGVRPDVI-TYGTLINGFCRTGNLSVALRLHKKMVSGDY 183 (626)
Q Consensus 115 ~ll~~~----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 183 (626)
.+.... -..++.+...|++++|++.|+++.+.+ +|+.. ....+.......|+.++|++.++++.+..
T Consensus 100 ~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~- 177 (1157)
T PRK11447 100 SSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY- 177 (1157)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-
Confidence 211110 123456788999999999999998764 33432 22222223335699999999999999886
Q ss_pred CCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCC----------------C----------------CCcchH
Q 040279 184 ENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGI----------------N----------------PAVVVC 231 (626)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------~----------------~~~~~~ 231 (626)
|.+...+..+...+...|+.++|++.++++..... . |+....
T Consensus 178 ------P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~ 251 (1157)
T PRK11447 178 ------PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSV 251 (1157)
T ss_pred ------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHH
Confidence 66788888999999999999999999998754310 0 010000
Q ss_pred ---------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 232 ---------------------TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMI 290 (626)
Q Consensus 232 ---------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 290 (626)
......+...|++++|+..|++.++..+. +...+..+..++.+.|++++|+..|++..
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 01134456789999999999999886443 67788889999999999999999999988
Q ss_pred hcCCCCC-HhhH------------HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 040279 291 QRGLNPD-RFTY------------NSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYR 357 (626)
Q Consensus 291 ~~~~~~~-~~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 357 (626)
+...... ...+ ......+.+.|++++|...|+++.+... .+...+..+..++...|++++|++.|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7643211 1111 1224466788999999999999988743 356677778889999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHH------------------------------------------HHHcCCHHHHHHHHHHHH
Q 040279 358 QIISNGVRQTVITYNTLLSG------------------------------------------LFQAGQAGYAQKLFDEMK 395 (626)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~------------------------------------------~~~~~~~~~a~~~~~~~~ 395 (626)
++.+.. +.+...+..+... +...|++++|.+.+++..
T Consensus 410 ~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al 488 (1157)
T PRK11447 410 QALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL 488 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 988753 2233333333333 334455556666665555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHh-
Q 040279 396 LYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVV- 474 (626)
Q Consensus 396 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~- 474 (626)
+.. +.+...+..+...|.+.|++++|...++++.... +.+...+..+...+...++.++|+..++.+......++..
T Consensus 489 ~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~ 566 (1157)
T PRK11447 489 ALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQE 566 (1157)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHH
Confidence 432 2233444555555666666666666666555432 2233333333333444555555555555543321111111
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CH
Q 040279 475 --------TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DD 545 (626)
Q Consensus 475 --------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~ 545 (626)
.+..++..+...|+.++|.++++ . .+.+...+..+...+.+.|++++|+..|+++++ ..| +.
T Consensus 567 l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~----~~P~~~ 637 (1157)
T PRK11447 567 LAQRLQSDQVLETANRLRDSGKEAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT----REPGNA 637 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCH
Confidence 11223444556666666666655 1 244555667777788888888888888888887 566 46
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchhh--hhhhheeccCCccch----hccccCCCCCC
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLGS--MIGCTVRLMPQPEMS----DTLGDDGDGNA 614 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~--l~~~~~~~~~~~~~~----~~~~~~~p~~~ 614 (626)
..+..++.+|...|++++|.+.++++. ...|+.... .++.++...++.+.| +++.+..|+++
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll-------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLP-------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHh-------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 777888888888888888888888775 234443222 123333344553333 55555666554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-24 Score=241.74 Aligned_cols=493 Identities=11% Similarity=0.005 Sum_probs=322.8
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
++++|.+.|+.++...|.................|++++|+..++++.+. .|+.......+ +..+...|+++
T Consensus 127 ~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~L------A~ll~~~g~~~ 198 (1157)
T PRK11447 127 RTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTL------ALLLFSSGRRD 198 (1157)
T ss_pred CHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHH------HHHHHccCCHH
Confidence 78888888887776544322111111112223457778888888887765 55554443333 35667777777
Q ss_pred HHHHHHHHHHHCCC------------------C--------------CCHh---------------------HHHHHHHH
Q 040279 135 EATWLFKNMIAFGV------------------R--------------PDVI---------------------TYGTLING 161 (626)
Q Consensus 135 ~A~~~~~~~~~~~~------------------~--------------~~~~---------------------~~~~li~~ 161 (626)
+|+..++++..... . |+.. ........
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 77777777644210 0 0000 00122455
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCC-CcchHH--------
Q 040279 162 FCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP-AVVVCT-------- 232 (626)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-------- 232 (626)
+...|++++|+..|++.++.+ |.+...+..+...+.+.|++++|+..|++..+..... ....|.
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 677899999999999999876 6678899999999999999999999999988763211 111121
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040279 233 ----TLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGY 308 (626)
Q Consensus 233 ----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 308 (626)
.....+.+.|++++|+..|+++++..+. +...+..+...+...|++++|++.|+++.+... .+...+..+...+
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 2244667899999999999999987543 666788889999999999999999999987632 2333343333333
Q ss_pred ------------------------------------------HhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 040279 309 ------------------------------------------CLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKI 346 (626)
Q Consensus 309 ------------------------------------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (626)
...|++++|++.|++..+.... +...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3445555555555555554321 334444555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcC
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLS---------TYNILIDGLCKNN 417 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g 417 (626)
|++++|+..++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 55555555555555432 1223333333334445555555555555443221111111 1123344566677
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLL 497 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (626)
+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++.++...|++++|++.++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777777661 25566677888889999999999999999998863 3357888899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 498 YMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP---DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 498 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.+.+.. +.+..++..+..++...|++++|.+++++++.....-.| +...+..++.++...|++++|.+.|++++.
T Consensus 662 ~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 887752 334566777888888999999999999998871111122 224566778889999999999999999864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-22 Score=214.58 Aligned_cols=531 Identities=11% Similarity=0.007 Sum_probs=332.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhh
Q 040279 44 FLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNK 123 (626)
Q Consensus 44 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l 123 (626)
++.+......|++++|+..|+.+++..|. +..++..++..|.+.|++++|+..+++..+. .|+...+..++..
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~---- 120 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAA---- 120 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHH----
Confidence 44444433336999999999999999887 5899999999999999999999999999987 6766666655531
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCCCccccccHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLING--------FCRTGNLSVALRLHKKMVSGDYENGLISKTNIFS 195 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 195 (626)
.+++++|..+++++.+.. +-+..++..+... |.+. ++|.+.++ ..... ..++..+
T Consensus 121 ------i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~------~~~~~~v 183 (987)
T PRK09782 121 ------IPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFA------ASPEGKT 183 (987)
T ss_pred ------hccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhC------CCCCcHH
Confidence 178889999999998873 3345555555554 4444 44444444 22211 1223443
Q ss_pred HHHH-HHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040279 196 YSII-IDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC-AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCL 273 (626)
Q Consensus 196 ~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (626)
.... ...|.+.|++++|++++.++.+.+ +.+......|...|.. .++ +++..+++.. .+.+...+..++..+
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~y 257 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATAL 257 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHH
Confidence 3433 778888888888888888888775 2344445566666666 355 6666664431 224666777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-CCHhhH------------------------------HHHHHHHH-------------
Q 040279 274 CKGGKINEANGLLELMIQRGLN-PDRFTY------------------------------NSLMDGYC------------- 309 (626)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~------------------------------~~ll~~~~------------- 309 (626)
.+.|+.++|.++++++...... |...++ ..++..+.
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA 337 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 7777777777777665432111 111110 00122222
Q ss_pred --------------------------------------------------hcCChHHHHHHHHHHHhc-C-CCCChhhHH
Q 040279 310 --------------------------------------------------LVGRIDTAREIFLSMHSK-G-CKHTVVSYN 337 (626)
Q Consensus 310 --------------------------------------------------~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~ 337 (626)
+.|+.++|.++|+..... + ...+.....
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 338 TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 334444444444444331 0 111222333
Q ss_pred HHHHHHHhcCC---hHHHHHH----------------------HHHHHHC-C-CCC--ChhhHHHHHHHHHHcCCHHHHH
Q 040279 338 ILINGYCKILN---VEEAMSL----------------------YRQIISN-G-VRQ--TVITYNTLLSGLFQAGQAGYAQ 388 (626)
Q Consensus 338 ~l~~~~~~~~~---~~~A~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~ 388 (626)
-++..|.+.+. ..++..+ ++..... + .++ +...+..+...+.. ++.++|.
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 44555554443 2222222 1111111 0 122 44555656655555 6777788
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC
Q 040279 389 KLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKG 468 (626)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 468 (626)
..+...... .|+......+...+...|++++|...|+.+... +|+...+..+...+.+.|++++|...+++..+..
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 877776654 355444444455556788888888888877544 3444455666777888888888888888887753
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHH
Q 040279 469 LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTT 547 (626)
Q Consensus 469 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~ 547 (626)
+++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++++. +.|+ ...
T Consensus 573 -P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~~~a 645 (987)
T PRK09782 573 -LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE----LEPNNSNY 645 (987)
T ss_pred -CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHH
Confidence 223333333444445568888888888888875 46777888888888888888888888888888 6774 567
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchhhh--hhhheeccCCccc----hhccccCCCCCCchhHHHH
Q 040279 548 FSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLGSM--IGCTVRLMPQPEM----SDTLGDDGDGNAGPIILSA 621 (626)
Q Consensus 548 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l--~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~ 621 (626)
+..++.++...|++++|.+.++++. ...|+....+ ++.++...|+.+. .++++++.|+++......+
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL-------~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAH-------KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 7788888888888888888888886 3456553222 3444455566443 4677888888877665555
Q ss_pred HH
Q 040279 622 VL 623 (626)
Q Consensus 622 ~~ 623 (626)
.+
T Consensus 719 ~~ 720 (987)
T PRK09782 719 EQ 720 (987)
T ss_pred HH
Confidence 43
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-24 Score=201.32 Aligned_cols=453 Identities=16% Similarity=0.128 Sum_probs=371.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGT 157 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (626)
...|+.-..+.|++.+|.+-...+-+. .|.......+++ ..+.+..+.+....--...++.. +.-..+|+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~------ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn 121 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLS------AIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSN 121 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeeh------hhhhcccchhhhhhhhhhhhhcc-chHHHHHHH
Confidence 445677778899999999888776654 344333333433 46777777777766655555542 446788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchH-HHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVC-TTLIH 236 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~ 236 (626)
+.+.+-..|++++|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.... ..+..
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 9999999999999999999999986 677889999999999999999999999999886 4554433 33555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChH
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD-RFTYNSLMDGYCLVGRID 315 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~ 315 (626)
.+-..|+.++|...+.+.++..+. =...|..+...+-.+|+...|+..|++..+.+ |+ ...|..|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcch
Confidence 556789999999999999886432 35578999999999999999999999998863 33 467888999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040279 316 TAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMK 395 (626)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 395 (626)
.|...+.+..... +.....+..+...|...|.+|-|+..|++.++.. +.-...|+.+..++-..|+..+|.+.|.+.+
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999998887763 2256778888888999999999999999999863 2245789999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-Hh
Q 040279 396 LYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VV 474 (626)
Q Consensus 396 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 474 (626)
... +......+.|...+...|.+++|..+|....+.. +.-....+.|...|-++|++++|+..+++.+. +.|+ ..
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd 423 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD 423 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH
Confidence 753 3345678889999999999999999999887654 44567789999999999999999999999988 5777 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVV 552 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~ 552 (626)
.|+.+...|...|+.+.|.+.+.+.+.. .|. ...++.|...|-..|+..+|+.-|+.+++ ++|| +..+..++
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk----lkPDfpdA~cNll 497 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK----LKPDFPDAYCNLL 497 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc----cCCCCchhhhHHH
Confidence 8999999999999999999999999985 565 46889999999999999999999999998 8997 57788877
Q ss_pred HHHHccCCHhH
Q 040279 553 DLLAKDEKYHE 563 (626)
Q Consensus 553 ~~~~~~g~~~~ 563 (626)
.++.-..+|.+
T Consensus 498 h~lq~vcdw~D 508 (966)
T KOG4626|consen 498 HCLQIVCDWTD 508 (966)
T ss_pred HHHHHHhcccc
Confidence 77654444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-24 Score=201.27 Aligned_cols=434 Identities=15% Similarity=0.126 Sum_probs=360.8
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
+....+.|++++|++....+-..+ +.+......+-..+.+..+.+....--....+.. +.-..+|..+.+.+
T Consensus 55 ah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-------~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 55 AHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-------PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-------chHHHHHHHHHHHH
Confidence 355678899999999887766553 3344455556677777778887776666666554 56688999999999
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHH
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLT-FNVMIDCLCKGGKINEA 282 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a 282 (626)
...|++++|+..++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+... ...+....-..|++++|
T Consensus 127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchh
Confidence 99999999999999999874 336789999999999999999999999999885 444443 33455556678999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 283 NGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
...+.+.++.. +-=...|+.|...+...|+.-.|+..|++..+.+.. -...|-.+...|...+.++.|+..|.+....
T Consensus 204 ~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 204 KACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 99998888763 223467888888999999999999999999987422 3567888999999999999999999998876
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 040279 363 GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPD-LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIF 441 (626)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 441 (626)
. +.....+..+...|...|..+.|+..|++.++. .|+ ...|+.|..++...|++.+|...++...... +......
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 2 234577888888999999999999999999875 454 5689999999999999999999999988765 5567788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 040279 442 NCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV-VTFNTLMHGFL 519 (626)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 519 (626)
+.|...|...|.++.|..+|....+- .|. ...++.|...|.++|++++|+..|++.++ +.|+. ..++.+...|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 99999999999999999999999883 455 66789999999999999999999999998 67875 58999999999
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCch
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSL 586 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~ 586 (626)
..|+.+.|++.+.+++. ++|. .+.+..|+.+|..+|...+|+.-|++++ ..+|..|+.+
T Consensus 434 e~g~v~~A~q~y~rAI~----~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL----klkPDfpdA~ 493 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ----INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL----KLKPDFPDAY 493 (966)
T ss_pred HhhhHHHHHHHHHHHHh----cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH----ccCCCCchhh
Confidence 99999999999999998 8996 5789999999999999999999999996 2344455543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-21 Score=205.77 Aligned_cols=501 Identities=12% Similarity=0.005 Sum_probs=317.8
Q ss_pred CCCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 040279 34 VSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL 113 (626)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 113 (626)
.|........+...+...| +.++|+..+++.++.+|. |...+..+... +++++|+.+++++.+. .|+....
T Consensus 74 dP~n~~~~~~LA~~yl~~g--~~~~A~~~~~kAv~ldP~-n~~~~~~La~i----~~~~kA~~~ye~l~~~--~P~n~~~ 144 (987)
T PRK09782 74 VPDNIPLTLYLAEAYRHFG--HDDRARLLLEDQLKRHPG-DARLERSLAAI----PVEVKSVTTVEELLAQ--QKACDAV 144 (987)
T ss_pred CCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCcc-cHHHHHHHHHh----ccChhHHHHHHHHHHh--CCCChhH
Confidence 3445555666666777766 999999999999998763 66666555332 9999999999999987 6665544
Q ss_pred HHHHHhh--hhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCcccc
Q 040279 114 NILINCF--GNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTL-INGFCRTGNLSVALRLHKKMVSGDYENGLISK 190 (626)
Q Consensus 114 ~~ll~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 190 (626)
..++... +.-.-.|.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+++++++.+.+ +
T Consensus 145 ~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-------p 213 (987)
T PRK09782 145 PTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-------T 213 (987)
T ss_pred HHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-------C
Confidence 4443221 0000012222 33333333 2222122233333333 555666666666666666655544 2
Q ss_pred ccHHHHHHHHHHHHh-cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------
Q 040279 191 TNIFSYSIIIDSLCK-EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGP---------- 259 (626)
Q Consensus 191 ~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------- 259 (626)
.+......|...|.. .++ +++..+++.. ++.+...+..+...|.+.|+.++|.++++++.....
T Consensus 214 l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 214 LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 223333333334433 233 3333332211 112333444444444444444444444433321100
Q ss_pred --------------------------------------------------------------------------------
Q 040279 260 -------------------------------------------------------------------------------- 259 (626)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (626)
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence
Q ss_pred ----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-C-CCCCHhhHHHHHHHHHhcCC---hHHHHHH----------
Q 040279 260 ----RPNLLTFNVMIDCLCKGGKINEANGLLELMIQR-G-LNPDRFTYNSLMDGYCLVGR---IDTAREI---------- 320 (626)
Q Consensus 260 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~---~~~a~~~---------- 320 (626)
+-+......+.-.....|+.++|.++++..... + ...+.....-++..|.+.+. ..++..+
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 001111112222234556677777777766552 1 12233344466777777665 3333222
Q ss_pred ------------HHHHHhc-CC-CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 040279 321 ------------FLSMHSK-GC-KH--TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQA 384 (626)
Q Consensus 321 ------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (626)
++..... +. ++ +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCH
Confidence 1111111 11 23 56677777777776 8899999988888775 34544433445555789999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 040279 385 GYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKL 464 (626)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (626)
++|...++++... +|+...+..+...+.+.|+.++|...++...... +.+...+..+.......|++++|...+++.
T Consensus 526 eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 526 ATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999998654 4555556677788899999999999999998765 334444444445555669999999999999
Q ss_pred ccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-
Q 040279 465 PQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP- 543 (626)
Q Consensus 465 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p- 543 (626)
.+. .|+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++|+..++++++ +.|
T Consensus 603 L~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~----l~P~ 675 (987)
T PRK09782 603 LNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK----GLPD 675 (987)
T ss_pred HHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCC
Confidence 985 5678899999999999999999999999999974 55677888889999999999999999999998 778
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 544 DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 544 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+...+..++.++...|++++|+..++++.
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57789999999999999999999999997
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-21 Score=189.49 Aligned_cols=513 Identities=11% Similarity=0.072 Sum_probs=247.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhh
Q 040279 42 NEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFG 121 (626)
Q Consensus 42 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 121 (626)
.-+..+....+-+|+..|+.+|..++...|..-+...-.+...+.+.|+.+.|+..|+++++. .|+.+.....|+.+.
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHH
Confidence 333444444455699999999999887776533333444556778999999999999999976 554333333333221
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
-.+.....+..+..++...-... +-++.+.+.|..-|.-.|++..+..+.+.+...... -+.-...|..+.+
T Consensus 244 ---l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~----~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 244 ---LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN----KSIKAESFYQLGR 315 (1018)
T ss_pred ---HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHH
Confidence 11111223445555555544432 334555555666666666666666665555543210 0122334555566
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAV--VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGG-- 277 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 277 (626)
+|-..|++++|...|.+..+.. ++. ..+.-|...|.+.|+.+.+...|+.+.... +.+..+...+...|...+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh
Confidence 6666666666666665555442 222 223334555556666666666666655542 224444555555554443
Q ss_pred --CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH----hcCCCCChhhHHHHHHHHHhcCChHH
Q 040279 278 --KINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMH----SKGCKHTVVSYNILINGYCKILNVEE 351 (626)
Q Consensus 278 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (626)
..+.|..++....+.- +.|...|..+...+.... ...++..|..+. ..+..+.+...|.+...+...|+++.
T Consensus 393 ~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred hHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHH
Confidence 2344444444444332 223444444433333222 222233333222 22223344445555555555555555
Q ss_pred HHHHHHHHHHC---CCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC------------------------
Q 040279 352 AMSLYRQIISN---GVRQTV------ITYNTLLSGLFQAGQAGYAQKLFDEMKLYN------------------------ 398 (626)
Q Consensus 352 A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------ 398 (626)
|...|...... ...++. .+-..+...+-..++.+.|.+.|..+.+..
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHH
Confidence 55555444432 001111 111223333334444444544444444321
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHH------------cCCHHH
Q 040279 399 ---------VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK-FEFGIEIFNCLIDGLCK------------AGRLDN 456 (626)
Q Consensus 399 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~ 456 (626)
...++..+..+...+.+...+..|.+-|+.+.+.. ..+|..+...|.+.|.. .+..++
T Consensus 551 ~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 551 LLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 12233333333444444444444444443333221 11333444444443322 223455
Q ss_pred HHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 457 AWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 457 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|+++|.++++.. +.|...-|-++-+++..|++.+|..+|.+..+.. .....+|..+.++|...|++..|++.|+...+
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555542 2244444555555555566666666666555542 22344555555566666666666666655554
Q ss_pred CCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 537 PERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 537 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+.-.-+..+...|+.++.+.|++.+|.+++..+.
T Consensus 709 -kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 709 -KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred -HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12222245555555566666666666655555553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-20 Score=193.85 Aligned_cols=426 Identities=13% Similarity=0.023 Sum_probs=296.9
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
..+..+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++++++.+ +.+...+..+..
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~~a~ 202 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHH
Confidence 4577889999999999999999876 6778889999999999999999999999999876 667888999999
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINE 281 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 281 (626)
+|...|++++|+.-|..+...+. .+......++..+.. ..+........+... ++...+..+...+ .......
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCc
Confidence 99999999999988877655421 111111222221111 223333333333322 2222333332222 1111111
Q ss_pred HHHHHHHHHhcCCCCCH-hhHHHHHHH---HHhcCChHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDR-FTYNSLMDG---YCLVGRIDTAREIFLSMHSKG--CKHTVVSYNILINGYCKILNVEEAMSL 355 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 355 (626)
...-+....+. .++. ..+..+... ....+++++|.+.|+...+.+ .+.....+..+...+...|++++|+..
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11111111111 1111 111111111 123467889999999988764 122455677788888889999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 356 YRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE 435 (626)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (626)
+++.++.. +.....|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...|+...... +
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence 99998763 2245677788888889999999999999988753 4457788888888999999999999999888765 5
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVV------ 509 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------ 509 (626)
.+...+..+..++.+.|++++|+..|++..+. .+.+...++.+..++...|++++|++.|++..+..-..+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 56777888888999999999999999998875 23357788889999999999999999999988753111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 510 TFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.++.....+...|++++|.+++++++. +.|+ ...+..++.++...|++++|.++|+++.+
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~----l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALI----IDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111222233446899999999999887 6675 45688889999999999999999999853
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-19 Score=187.41 Aligned_cols=431 Identities=13% Similarity=0.016 Sum_probs=304.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYG 156 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 156 (626)
.+...+..+.+.|++++|+..|+++++. .|+...+. .++.+|...|++++|+..++..++.. +.+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~-------n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~ 198 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYS-------NRAACHNALGDWEKVVEDTTAALELD-PDYSKALN 198 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHH-------HHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 4557788899999999999999999876 56644332 23567888999999999999999874 44677899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
.+..++...|++++|+.-|..+...+ +.+......++..+.. ..+........+.. +++...+..+..
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~-------~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~ 266 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIID-------GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN 266 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-------CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH
Confidence 99999999999999999888776544 1111111222221111 12223333333321 223334443333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHhcC-C-CCCHhhHHHHHHHHHhc
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCL---CKGGKINEANGLLELMIQRG-L-NPDRFTYNSLMDGYCLV 311 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~ 311 (626)
|......+....-+.+..+.... ....+..+...+ ...+++++|...|+...+.+ . +.....+..+...+...
T Consensus 267 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 267 -YLQSFRPKPRPAGLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred -HHHHccCCcchhhhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 22222222222222221111111 011111111111 23478999999999998764 2 22445677788888899
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 040279 312 GRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLF 391 (626)
Q Consensus 312 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (626)
|++++|+..++...+... .....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|
T Consensus 345 g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 345 GKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred CCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999988742 245678888889999999999999999998863 446788888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC
Q 040279 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP 471 (626)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (626)
++..+.. +.+...+..+..++.+.|++++|+..|+...... +.+...++.+...+...|++++|++.|++........
T Consensus 423 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 423 QKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 9998864 4456677788889999999999999999988654 5678889999999999999999999999988742211
Q ss_pred CH------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 472 TV------VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 472 ~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+. ..++..+..+...|++++|.+++++..+.+ +.+...+..++..+.+.|++++|+++|+++.+
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11 112222333445799999999999998864 34456788999999999999999999999988
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-19 Score=180.48 Aligned_cols=465 Identities=14% Similarity=0.084 Sum_probs=351.7
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
.+..+...+...-...+. ++++.+.|...+.-.|++..+..+...+.... ..-...-..|-.++++|..+|+++
T Consensus 251 s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHH
Confidence 456666666666555444 67778888888888888888888888887531 111222234446789999999999
Q ss_pred HHHHHHHHHHHCCCCCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC----C
Q 040279 135 EATWLFKNMIAFGVRPDVI--TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG----L 208 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~ 208 (626)
+|...|.+..+. .++.+ .+--++..+.+.|+++.+...|+.+.... |.+..+...|...|...+ .
T Consensus 325 kA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-------p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 325 KAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-------PNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred HHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-------cchHHHHHHHHhHHHhhhhhhHH
Confidence 999999998876 44443 44567899999999999999999999876 777888888888888775 4
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040279 209 VDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEML----DLGPRPNLLTFNVMIDCLCKGGKINEANG 284 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 284 (626)
.+.|..++.+..+.- +.|...|..+...+...+-+.. +..|.... ..+..+.+...|.+...+...|++++|..
T Consensus 396 ~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 566777777766653 4577788888887766655544 77666544 34445678889999999999999999999
Q ss_pred HHHHHHhc---CCCCCH------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHH
Q 040279 285 LLELMIQR---GLNPDR------FTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVV-SYNILINGYCKILNVEEAMS 354 (626)
Q Consensus 285 ~~~~~~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~ 354 (626)
.|+..... ...+|. .+-..+..+.-..++++.|.+.|..+.+. .|+-. .|-.++......++..+|..
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHH
Confidence 99988765 122333 12233455666678999999999999987 23333 33333323334578889999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh------------cCCHHH
Q 040279 355 LYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN-VEPDLSTYNILIDGLCK------------NNCVQE 421 (626)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~ 421 (626)
.++.+... ...++..+..+...+.....+..|.+-|..+.+.- ..+|..+...|.+.|.+ .+..++
T Consensus 552 ~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 552 LLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 99998876 34467777777788999999999998777776532 23577777777776643 346778
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 422 AVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
|+++|.++.+.. |-|...-|.+.-+++..|++..|..+|.+..+... ....+|..++.+|..+|++..|+++|+...+
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888776 66888888999999999999999999999988632 3567899999999999999999999999876
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH
Q 040279 502 N-GCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 502 ~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 545 (626)
. .-..+..+...|.+++.+.|.+.+|.+.+..+.. ..|..
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~----~~p~~ 749 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH----LAPSN 749 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----hCCcc
Confidence 5 3344678899999999999999999999999987 66743
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=187.50 Aligned_cols=301 Identities=12% Similarity=0.098 Sum_probs=157.6
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
++++|...|+++++.+|. +..++..++..+.+.|++++|+.+++.+...+..++.... ..+..++..|...|+++
T Consensus 50 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~----~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL----LALQELGQDYLKAGLLD 124 (389)
T ss_pred ChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHHHHHHCCCHH
Confidence 666666666666665443 4556666666666666666666666666653211111111 11112345566666666
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKE 214 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (626)
+|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. .......+..+...+.+.|++++|.+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL--RVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6666666666542 33455666666666666666666666666655431000 00011223444555555666666666
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040279 215 LFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL 294 (626)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 294 (626)
.|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+.++.....+++.++.+|...|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 666655442 22334455555555666666666666666554432222334455555555556666665555555554
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCh
Q 040279 295 NPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK---ILNVEEAMSLYRQIISNGVRQTV 368 (626)
Q Consensus 295 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~ 368 (626)
.|+...+..+...+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.+++++.+.++.|++
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 233334455555555555555555555555544 3445555554444442 33555555555555554443333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-19 Score=186.54 Aligned_cols=402 Identities=9% Similarity=-0.016 Sum_probs=237.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcch
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 230 (626)
+.....-.+.+....|+.++|++++++..... +.+...+..+...+...|++++|.+++++..+.. +.+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a 85 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDY 85 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 33334444555555566666665555555422 2334445555555555566666666665555442 223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040279 231 CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL 310 (626)
Q Consensus 231 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 310 (626)
+..++..+...|++++|+..+++..+..+. +.. +..+..++...|+.++|+..++++.+... .+...+..+..++..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~ 162 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 455555555556666666666655554222 333 55555555555666666666666555421 133333444445555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHH-----hcCCh---HHHHHHHHHHHHC-CCCCChh-hHH--
Q 040279 311 VGRIDTAREIFLSMHSKGCKHTV------VSYNILINGYC-----KILNV---EEAMSLYRQIISN-GVRQTVI-TYN-- 372 (626)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~~~-- 372 (626)
.+..+.|++.++.+... |+. ......+.... ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 163 ~~~~e~Al~~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 55555555555543321 110 01111111111 11223 6677777777753 1122211 111
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHH
Q 040279 373 --TLLSGLFQAGQAGYAQKLFDEMKLYNVE-PDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEF---GIEIFNCLID 446 (626)
Q Consensus 373 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~ 446 (626)
..+..+...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+.+|+.+....... .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 1133445668888888888888775421 322 22224667888888888888888876543111 1234555666
Q ss_pred HHHHcCCHHHHHHHHHhcccCCC-----------CCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGL-----------VPT---VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFN 512 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (626)
++...|++++|.++++++..... .|+ ...+..++..+...|++++|++.++++.... +.+...+.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~ 397 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRI 397 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 77888888888888888776421 122 2245566778888899999999999988763 55677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.++..+...|++++|++.+++++. +.|+ ...+...+..+...|++++|+.+++++.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~----l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEV----LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888888899999999999999988 7785 5667777778888999999999999986
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-18 Score=185.16 Aligned_cols=409 Identities=13% Similarity=-0.008 Sum_probs=311.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
.....|+.++|++++.+..... +.+...+..+..++.+.|++++|.+++++.++.. |.+...+..++..+..
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 4466899999999999998632 5566679999999999999999999999999876 6677888899999999
Q ss_pred cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040279 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGL 285 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 285 (626)
.|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...+..++|+..
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999998873 34555 888899999999999999999999997544 566667788888889999999998
Q ss_pred HHHHHhcCCCCCH------hhHHHHHHHHH-----hcCCh---HHHHHHHHHHHhc-CCCCChh-hHH----HHHHHHHh
Q 040279 286 LELMIQRGLNPDR------FTYNSLMDGYC-----LVGRI---DTAREIFLSMHSK-GCKHTVV-SYN----ILINGYCK 345 (626)
Q Consensus 286 ~~~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~ 345 (626)
++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+..+..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 887654 2221 11122222222 12234 7788888888864 1222221 111 11334567
Q ss_pred cCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHH
Q 040279 346 ILNVEEAMSLYRQIISNGVR-QTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEP---DLSTYNILIDGLCKNNCVQE 421 (626)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 421 (626)
.+++++|+..|+++.+.+.+ |+. ....+...|...|++++|...|+.+.+..... .......+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 79999999999999987532 222 22335778999999999999999987643111 12445666778899999999
Q ss_pred HHHHHHHHHHCCC-----------CcC---HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcC
Q 040279 422 AVKLFHMLEMNKF-----------EFG---IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKG 487 (626)
Q Consensus 422 A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 487 (626)
|..+++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...+..++..+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 9999999886531 122 2345667788899999999999999998863 445788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 040279 488 KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLL 555 (626)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 555 (626)
++++|++.++++.+.. +.+...+...+..+...|++++|...++++++ ..|+......+-..+
T Consensus 408 ~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~----~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 408 WPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA----REPQDPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHH
Confidence 9999999999999963 44466777778889999999999999999998 788766555554443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-20 Score=184.83 Aligned_cols=302 Identities=13% Similarity=0.102 Sum_probs=163.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCC---cchHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA---VVVCTTL 234 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 234 (626)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3445567778888888888887765 45566777777777788888888888777766421111 1345666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----hhHHHHHHHHHh
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDR----FTYNSLMDGYCL 310 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~ 310 (626)
+..|...|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 677777777777777777776542 234556666777777777777777777776665322211 122333444445
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 040279 311 VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKL 390 (626)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 390 (626)
.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+....
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------------- 248 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----------------------- 248 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----------------------
Confidence 555555555555554432 11233344444444444555555555444443311111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC
Q 040279 391 FDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV 470 (626)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (626)
..++..++.+|...|++++|...++.+.+.. |+...+..++..+.+.|++++|..+++++.+. .
T Consensus 249 ------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~ 312 (389)
T PRK11788 249 ------------SEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--H 312 (389)
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--C
Confidence 2234444445555555555555555544432 23333344555555555555555555555443 3
Q ss_pred CCHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 040279 471 PTVVTYSIMIHGLCR---KGKLEKANDFLLYMEKNGCAPN 507 (626)
Q Consensus 471 p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~ 507 (626)
|+..+++.++..+.. .|+.+++..+++++.+.++.|+
T Consensus 313 P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 313 PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 444445444444332 2355555555555554443333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-19 Score=182.88 Aligned_cols=326 Identities=12% Similarity=0.030 Sum_probs=160.3
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
...+.|++++|+.+++..+... +-+...+..++.+....|++++|+..++++...+ |.+...+..+...+.+
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-------P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-------VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHH
Confidence 3444555555555555555542 2233444444455555555555555555555544 4444455555555555
Q ss_pred cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040279 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGL 285 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 285 (626)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+....+. +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 555555555555555431 223444555555555555555555555555443222 12222222 224455555555555
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 040279 286 LELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEE----AMSLYRQIIS 361 (626)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~ 361 (626)
++.+.+....++...+..+...+...|++++|...+++..+... .+...+..+...+...|++++ |+..++++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 55554442222222333334445555555555555555554432 234445555555555555553 4555555554
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 040279 362 NGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIF 441 (626)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 441 (626)
.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++.+.... +.+...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHH
Confidence 42 2234455555555555555555555555555432 2233344445555555555555555555555432 1122223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 442 NCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
..+..++...|+.++|...|+++.+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334445555555555555555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-18 Score=181.45 Aligned_cols=333 Identities=15% Similarity=0.045 Sum_probs=213.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGT 157 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (626)
.-.++..+.++|++++|..+++..+.. .|+.......+. ......|++++|+..|+++.... +.+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~------~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~ 115 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWV------ISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLL 115 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHh------hhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 344556667777777777777777765 444444433332 23455777777777777777663 334566677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG 237 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (626)
+...+...|++++|+..++++.... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~ 186 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LS 186 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HH
Confidence 7777777777777777777777654 4556667777777777777777777777665542 1122233232 33
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHH-
Q 040279 238 FCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDT- 316 (626)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~- 316 (626)
+...|++++|...++.+++....++...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhh
Confidence 66677777777777777665433334444445566677777777777777777653 3345566667777777777764
Q ss_pred ---HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 040279 317 ---AREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDE 393 (626)
Q Consensus 317 ---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 393 (626)
|...|++..+... .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.
T Consensus 266 ~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6777777776542 255667777777777777777777777777653 22445566667777777777777777777
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 394 MKLYNVEPDL-STYNILIDGLCKNNCVQEAVKLFHMLEMNK 433 (626)
Q Consensus 394 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 433 (626)
+... .|+. ..+..+..++...|+.++|...|++..+..
T Consensus 344 al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 344 LARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7654 2333 233334556677777777777777766543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-17 Score=172.81 Aligned_cols=457 Identities=12% Similarity=0.032 Sum_probs=247.3
Q ss_pred CCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 040279 35 SSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLN 114 (626)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 114 (626)
|..+.+...-+....+.| +++.|+..|+++++..|...+.++ .++..+...|+.++|+..+++.. .|+...+.
T Consensus 31 p~~~~~~y~~aii~~r~G--d~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~ 103 (822)
T PRK14574 31 PAMADTQYDSLIIRARAG--DTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSR 103 (822)
T ss_pred ccchhHHHHHHHHHHhCC--CHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHH
Confidence 333344444444455655 888888888888887665333344 77777778888888888888887 45555555
Q ss_pred HHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHH
Q 040279 115 ILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIF 194 (626)
Q Consensus 115 ~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (626)
.++. ++..+...|++++|+++|+++++.. +.+...+..++..+...++.++|++.++++...+ |+..
T Consensus 104 ~lla----lA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------p~~~ 170 (822)
T PRK14574 104 GLAS----AARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--------PTVQ 170 (822)
T ss_pred HHHH----HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------cchH
Confidence 4442 2356777788888888888888874 3356677777888888888888888888887765 3344
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLC 274 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (626)
.+..++..+...++..+|++.++++.+.. +.+...+..+.....+.|-...|.++..+-... ..+...-+ +.
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~---l~--- 242 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ---LE--- 242 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH---HH---
Confidence 44444444444566656888888888773 335666777777888888888887766553321 11111100 00
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCC-hhhH----HHHHHHHHhcCC
Q 040279 275 KGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSK-GCKHT-VVSY----NILINGYCKILN 348 (626)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~ 348 (626)
.+.+-+.. +.+..++..- . .+.--.+.|+.-++.+... +..|. ...| .-.+-++...++
T Consensus 243 ----~~~~a~~v----r~a~~~~~~~-~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 243 ----RDAAAEQV----RMAVLPTRSE-T------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred ----HHHHHHHH----hhcccccccc-h------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 00000000 0000000000 0 0000122233333333321 00111 1111 112334445555
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 349 VEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN-----VEPDLSTYNILIDGLCKNNCVQEAV 423 (626)
Q Consensus 349 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~ 423 (626)
+.++++.|+.+...+.+....+-..+..+|...+++++|..+|+.+.... ..++......|..++...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 55555555555555444334444555555555555555555555554321 1122223344555555555555555
Q ss_pred HHHHHHHHCCC-----------CcC---HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCH
Q 040279 424 KLFHMLEMNKF-----------EFG---IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKL 489 (626)
Q Consensus 424 ~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 489 (626)
.+++.+.+..+ .|+ ...+..++..+...|++.+|++.++++.... +-|......+...+...|.+
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 55555554211 011 1223334455556666666666666665542 23455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 490 EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+|++.++...... +-+..+....+.++...|++++|..+.++..+
T Consensus 467 ~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 467 RKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 66666665544431 22344555555566666666666666666655
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-17 Score=172.26 Aligned_cols=450 Identities=13% Similarity=0.066 Sum_probs=323.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHh
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL--TLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVI 153 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 153 (626)
.+...-+....+.|+++.|+..|+++++. .|+.. .+ .++ ..+...|+.++|+..+++.... .+....
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll-------~l~~~~G~~~~A~~~~eka~~p-~n~~~~ 103 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWL-------QIAGWAGRDQEVIDVYERYQSS-MNISSR 103 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHH-------HHHHHcCCcHHHHHHHHHhccC-CCCCHH
Confidence 33344445678999999999999999876 56542 33 333 3455679999999999998832 122333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (626)
....+...+...|++++|+++|+++.+.+ |.++..+..++..+...++.++|++.++++... .|+...+..
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~ 174 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMT 174 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHH
Confidence 34444668888999999999999999987 667788888888999999999999999999886 455555544
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 040279 234 LIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGR 313 (626)
Q Consensus 234 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 313 (626)
++..+...++..+|++.++++.+..+. +...+..++.+..+.|-...|.++..+- |+.++-...... +
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~ 242 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----E 242 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----H
Confidence 544444566666699999999987533 6777788888889999988888776653 222221111110 1
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCChhhH----HHHHHHHHHcCCHHHH
Q 040279 314 IDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN-G-VRQTVITY----NTLLSGLFQAGQAGYA 387 (626)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~a 387 (626)
.+.|.+..+..... +... . .+..-.+.|+.-++.+... + .++....| .-.+-++...+++.++
T Consensus 243 ~~~~a~~vr~a~~~---~~~~--~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 243 RDAAAEQVRMAVLP---TRSE--T------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred HHHHHHHHhhcccc---cccc--h------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 12222222221111 0000 0 0111345666666666652 1 12221222 2345577889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040279 388 QKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK-----FEFGIEIFNCLIDGLCKAGRLDNAWELFH 462 (626)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 462 (626)
++.|+.+...+.+.-..+-..+.++|...+++++|..+++.+.... .+++......|.-+|...+++++|..+++
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999988765445678889999999999999999999987543 13345556788999999999999999999
Q ss_pred hcccCCC-----------CCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 463 KLPQKGL-----------VPT---VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 463 ~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
++.+.-. .|+ ...+..++..+...|+..+|++.++++.... |-|......+...+...|.+.+|.
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9987311 133 2344566778899999999999999998874 678889999999999999999999
Q ss_pred HHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 529 ELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 529 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+.++.+.. +.|+ ..+....+.++...|++++|..+.++...
T Consensus 471 ~~~k~a~~----l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 471 QELKAVES----LAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHhh----hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99988877 7885 56777888899999999999999977643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-17 Score=152.68 Aligned_cols=461 Identities=13% Similarity=0.070 Sum_probs=298.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC----
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD---- 151 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---- 151 (626)
.+...|.+.|..+..+.+|+..|+-+++....|+......-+ ++.+.+..++.+|++.|+-.+..-...+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmni------gni~~kkr~fskaikfyrmaldqvpsink~~r 275 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNI------GNIHFKKREFSKAIKFYRMALDQVPSINKDMR 275 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeee------cceeeehhhHHHHHHHHHHHHhhccccchhhH
Confidence 345557777888888999999999999988889887766544 5789999999999999998877621111
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcc--
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVV-- 229 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 229 (626)
...++.+...|.+.|+++.|+..|+...+.. |+..+-..|+-++...|+-++..+.|.+|...-..||..
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~~--------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky 347 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEEA--------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY 347 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHhC--------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc
Confidence 2346667778889999999999999998865 666666667777778899999999999998653222222
Q ss_pred ------hHHHHHHHHHhcCCH-----------HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 230 ------VCTTLIHGFCCAGNW-----------EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 230 ------~~~~li~~~~~~~~~-----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
.-..|+.--.++... ++++-.--+++.--+.|+.. . -.+-+++.++.....
T Consensus 348 i~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~-g~dwcle~lk~s~~~ 415 (840)
T KOG2003|consen 348 IKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------A-GCDWCLESLKASQHA 415 (840)
T ss_pred cCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------c-ccHHHHHHHHHhhhh
Confidence 122233322222211 11111111111111111110 0 011122222211111
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHh-cCChHHHHHHHHHHHHCCCCCChhh
Q 040279 293 GLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILING-YCK-ILNVEEAMSLYRQIISNGVRQTVIT 370 (626)
Q Consensus 293 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~A~~~~~~~~~~~~~~~~~~ 370 (626)
.+..+.. ..-...+.+.|+++.|+++++-+.+..-+.....-+.+-.. |.+ -.++.+|.++-+..... ..-+...
T Consensus 416 ~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a 492 (840)
T KOG2003|consen 416 ELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAA 492 (840)
T ss_pred hhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHH
Confidence 1111111 11123467889999999988888776433222222322222 222 34577777776666543 1223332
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 040279 371 YNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK 450 (626)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (626)
...-.......|++++|.+.|++.+..+..-....|+ +.-.+-..|++++|+..|-.+...- ..+..+...+...|..
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYEL 570 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 2222333445788999999998888643211112222 2334567789999998886654321 3467777888888888
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
..+...|++++.+.... ++.|+..+..|...|-+.|+-..|.+.+-.--+. ++-|..+..+|..-|....-+++++.+
T Consensus 571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 88999999998887765 5567888888999999999988888877665554 567788888888888888888999999
Q ss_pred HHHhhcCCCCCCCCHHHHHHHH-HHHHccCCHhHHHHHHHHHHh
Q 040279 531 LHKMAEPERNLVPDDTTFSIVV-DLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 531 ~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~ 573 (626)
|+++.- +.|+..-|..++ .++.+.|.+++|.++|+..++
T Consensus 649 ~ekaal----iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 649 FEKAAL----IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHh----cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999876 889888888665 456788999999999999874
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-14 Score=144.54 Aligned_cols=550 Identities=12% Similarity=0.064 Sum_probs=363.6
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHhhhhhhhhhhhcCC
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDF-LTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
|++++|..++.++++..|. ....|..|+..|-..|+.+++...+-.+.-. .|+. ..|..+ .....++|+
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~l-------adls~~~~~ 222 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRL-------ADLSEQLGN 222 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHH-------HHHHHhccc
Confidence 4999999999999999876 7889999999999999999999887666533 4433 333332 355678899
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHH----HHHHHHHhcCC
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYS----IIIDSLCKEGL 208 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 208 (626)
+++|.-.|.++++.. +++-...-.-...|-+.|+...|...|.++.... .+.|..-.. ..++.+...++
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999985 4454555556788999999999999999999876 223333232 34566777777
Q ss_pred cchHHHHHHHHhhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------------------------
Q 040279 209 VDKAKELFLEMKGR-GINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRP-------------------------- 261 (626)
Q Consensus 209 ~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------- 261 (626)
.+.|.+.++..... +-..+...++.++..+.+...++.+.....++.....++
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 79999999988763 223456788999999999999999999888877621111
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHH
Q 040279 262 -NLLTFNVMIDCLCKGGKINEANGLLELMIQRG--LNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNI 338 (626)
Q Consensus 262 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (626)
+...+ -++-++...+..+....+...+.+.+ +.-+...|..+.+++...|++..|+.+|..+......-+...|..
T Consensus 376 ~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 22221 12222334444444444555555555 333556788899999999999999999999998865557789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHH
Q 040279 339 LINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKL--------YNVEPDLSTYNILI 410 (626)
Q Consensus 339 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~ 410 (626)
+..+|...|.++.|++.|++++... +.+...-..|...+.+.|+.++|.+.+..+.. .+..|+........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999999863 33556667788889999999999999998642 23345555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC----------------------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhc----
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNK----------------------FEFGIEIFNCLIDGLCKAGRLDNAWELFHKL---- 464 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 464 (626)
..+.+.|+.++-+.+-..|.... .+-.....-.+..+-.+.++.....+-...-
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 77788888877555444443211 1111222223333333333322222221111
Q ss_pred --ccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH---HH-HHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 465 --PQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC-APNVV---TF-NTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 465 --~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~---~~-~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
...|...+ -..+..++.++.+.+++++|+.+...+.+... .-+.. .+ ...+.+....+++..|...++.++
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11122111 12345677788999999999999999887532 11222 33 334456778999999999999998
Q ss_pred cCCCCC--CCCH-HHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCc--hhhhhhhheeccCCccchhccccCC
Q 040279 536 EPERNL--VPDD-TTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSS--LGSMIGCTVRLMPQPEMSDTLGDDG 610 (626)
Q Consensus 536 ~~~~~~--~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--~~~l~~~~~~~~~~~~~~~~~~~~~ 610 (626)
. ..+. .|.. ..|+...+.+.+.|+-.--.+++..+.......+ +|-. .+-..-.+..-.......-+++..+
T Consensus 694 ~-~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~--~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~ 770 (895)
T KOG2076|consen 694 T-QFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDT--PPLALIYGHNLFVNASFKHALQEYMRAFRQN 770 (895)
T ss_pred H-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCC--cceeeeechhHhhccchHHHHHHHHHHHHhC
Confidence 7 1111 3332 2344455666677766555566665542211111 1111 1111111112222244556888999
Q ss_pred CCCCchhHHHHHHhh
Q 040279 611 DGNAGPIILSAVLLI 625 (626)
Q Consensus 611 p~~~~~~~~~~~~~~ 625 (626)
|++|-.-+.+|.-++
T Consensus 771 pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 771 PDSPLINLCLGLAFI 785 (895)
T ss_pred CCCcHHHHHHHHHHH
Confidence 999988887776543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-14 Score=133.66 Aligned_cols=493 Identities=12% Similarity=0.065 Sum_probs=360.2
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
+++..|+.+|++++.-+ ..+...|...+.+-.++++..-|..+|++++..-...|...|..+. +--..|++
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y--------mEE~LgNi 157 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY--------MEEMLGNI 157 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH--------HHHHhccc
Confidence 57889999999998865 4488899999999999999999999999999875555666665543 33457999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHH
Q 040279 134 KEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAK 213 (626)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 213 (626)
..|.++|++.... .|+..+|.+.|+.-.+.+.++.|..++++.+- +.|++..|......-.++|+...|.
T Consensus 158 ~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 158 AGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 9999999999876 89999999999999999999999999999986 4699999999999999999999999
Q ss_pred HHHHHHhhC-CC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH-----
Q 040279 214 ELFLEMKGR-GI-NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPN-LLTFNVMIDCLCKGGKINEANGL----- 285 (626)
Q Consensus 214 ~~~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~----- 285 (626)
.+|+...+. |- ..+...+.+....=..+..++.|.-+|+-.+..-+... ...|..+...--+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999988764 10 11223344444444567889999999988887532211 34455555544455665444432
Q ss_pred ---HHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh-hhHHHHHHH--------HHhcCChHHHH
Q 040279 286 ---LELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTV-VSYNILING--------YCKILNVEEAM 353 (626)
Q Consensus 286 ---~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~--------~~~~~~~~~A~ 353 (626)
++.+.+.+ +-|-.+|-..+..-...|+.+...++|++....-.+.+. ..|...|.. -....+.+.+.
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444442 345566667777777889999999999999886322221 122222211 12467899999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 354 SLYRQIISNGVRQTVITYNTLLSGL----FQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHML 429 (626)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 429 (626)
++|+..++. ++....||..+--+| .++.+...|.+++...+ |..|...++...|..-.+.++++.+..+++..
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999985 666677776654444 46788999999998887 55888899999999999999999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 430 EMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL-VPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV 508 (626)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (626)
.+.+ |-+..+|......-...|+.+.|..+|+-+++... ..-...|.+.|..-...|.+++|..+|+++++. .+..
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~ 540 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHV 540 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccc
Confidence 9877 66788898888888899999999999999887421 112446777777778899999999999999986 3455
Q ss_pred HHHHHHHHHHH-----hcC-----------CHHHHHHHHHHhhcCCCCCCCCH---HHHHHHHHHHHccCCHhHHHHHHH
Q 040279 509 VTFNTLMHGFL-----QNN-----------KTSKVVELLHKMAEPERNLVPDD---TTFSIVVDLLAKDEKYHECSAVSK 569 (626)
Q Consensus 509 ~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~ 569 (626)
.+|.+....-. +.+ ....|..+|+.+........|.. ..+....+.-...|...+...+-.
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s 620 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQS 620 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 56666654332 233 45678888888765222233321 122233333345566656555555
Q ss_pred HHH
Q 040279 570 SSY 572 (626)
Q Consensus 570 ~~~ 572 (626)
.|+
T Consensus 621 ~mP 623 (677)
T KOG1915|consen 621 KMP 623 (677)
T ss_pred hcc
Confidence 554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-15 Score=135.07 Aligned_cols=429 Identities=17% Similarity=0.189 Sum_probs=263.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHH-HHHHHHHHCCCCCCH
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEAT-WLFKNMIAFGVRPDV 152 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~ 152 (626)
.+++-+.|+.. ..+|....+.-+|+.|.+.|+......-..++.. ..|....++.-|. +.|-.|...| ..+.
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~L-----V~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~ 187 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRL-----VTYYNSSNVPFAEWEEFVGMRNFG-EDST 187 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHH-----HHhhcCCCCcchhHHHHhhccccc-cccc
Confidence 34556666654 5678899999999999999888887777777753 3455555554332 2333444443 2233
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHH
Q 040279 153 ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCT 232 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 232 (626)
.+| +.|+..+ -+|+. .|.+..++..+|.++++.-..+.|.+++++......+.+..+||
T Consensus 188 ~sW--------K~G~vAd--L~~E~-----------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN 246 (625)
T KOG4422|consen 188 SSW--------KSGAVAD--LLFET-----------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFN 246 (625)
T ss_pred ccc--------ccccHHH--HHHhh-----------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhh
Confidence 334 3454433 33333 25556788888888888888888888888887776677778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040279 233 TLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINE----ANGLLELMIQRGLNPDRFTYNSLMDGY 308 (626)
Q Consensus 233 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~ 308 (626)
.+|.+-.-..+ .+++.+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+
T Consensus 247 ~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f 322 (625)
T KOG4422|consen 247 GLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNF 322 (625)
T ss_pred hhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHh
Confidence 88765443222 6777888887788888888888888888887654 456777788888888888888888877
Q ss_pred HhcCChHH-HHHHHHHHHhc----CC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---hhhHH
Q 040279 309 CLVGRIDT-AREIFLSMHSK----GC----KHTVVSYNILINGYCKILNVEEAMSLYRQIISNG----VRQT---VITYN 372 (626)
Q Consensus 309 ~~~g~~~~-a~~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~ 372 (626)
.+.++..+ +..++.++... .. +.+...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|.
T Consensus 323 ~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr 402 (625)
T KOG4422|consen 323 KRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYR 402 (625)
T ss_pred cccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHH
Confidence 77776543 44555554432 12 2234456666777777777777776655444221 1222 13345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 040279 373 TLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG 452 (626)
Q Consensus 373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 452 (626)
.+....++....+.....|+.|.-.-.-|+..+...++.+..-.|.++-.-++|.++...|...+......++..+++..
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 56666677777778888888887665667777777777877777888877777777776554433333333333333322
Q ss_pred -C--------HHH-----HHHHH-------HhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C---CCC
Q 040279 453 -R--------LDN-----AWELF-------HKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG-C---APN 507 (626)
Q Consensus 453 -~--------~~~-----A~~~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~---~p~ 507 (626)
+ +.. |..++ .++.+. .......+.++..+.+.|..++|.+++..+.+++ - .|.
T Consensus 483 ~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ 560 (625)
T KOG4422|consen 483 LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL 560 (625)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence 0 000 11111 111211 2233344555555666677777777776664432 1 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 508 VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
......++....+.+++..|...++-|..
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22333444555566666666666666655
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.8e-14 Score=133.92 Aligned_cols=519 Identities=10% Similarity=0.025 Sum_probs=268.7
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC------------CCCCCHhhHHHHHHhhh
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSI------------GLLPDFLTLNILINCFG 121 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------g~~p~~~~~~~ll~~~~ 121 (626)
+|...|+.+++.+.+.+|. ++..|-.-++.--..|.+..|..+..+=-+. .+.|....-..+-.+..
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4678899999999988876 5556666555556666666666554332111 01222221111111111
Q ss_pred -------------------------------------hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 040279 122 -------------------------------------NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCR 164 (626)
Q Consensus 122 -------------------------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 164 (626)
.+=.......+.+.|..++.+..+. ++.+.. |..++.+
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec-cp~s~d----LwlAlar 418 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC-CPQSMD----LWLALAR 418 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHH
Confidence 1111112223333444444444433 222222 3345666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHH----hhCCCCCCcchHHHHHHHHHh
Q 040279 165 TGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEM----KGRGINPAVVVCTTLIHGFCC 240 (626)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~ 240 (626)
..-++.|..++.++.+. +|.+..+|.+-...--.+|+.+...+++++- ...|+..+...|..=...|-.
T Consensus 419 LetYenAkkvLNkaRe~-------iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREI-------IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHhh-------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 67788888888888776 4778888888888888888888888877754 344666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHH
Q 040279 241 AGNWEEVNGLFIEMLDLGPRPN--LLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAR 318 (626)
Q Consensus 241 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 318 (626)
.|-.--+..+....+..|+.-. ..||+.-...|.+.+.++-|..+|...++. ++.+...|......--..|..+...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 6666666666666665554321 235555566666666666666666665554 2333344444444444445555555
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 040279 319 EIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN 398 (626)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 398 (626)
.+|++....- +.....|-.....+-..|+...|..++.++.+.. +.+...|-..+.......+++.|..+|.+....
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 5555554441 1123333333344444455555555555554432 123344444444444555555555555544432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHH
Q 040279 399 VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSI 478 (626)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (626)
.|+...|.--+...-..++.++|++++++..+.- +.-...|..+.+.+.+.++++.|...|..-.+. ++-.+..|..
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 2333333333333333444555555554444331 223344444444444444555444444443332 1222334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--------------------
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPE-------------------- 538 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------- 538 (626)
+...--+.|..-.|..++++..-.+ +.|...|...++.-.+.|..+.|..+..++++.-
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccc
Confidence 4444444444444444444444433 3344444444444444444444444433333200
Q ss_pred -------CCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchhhhhhhheecc
Q 040279 539 -------RNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLGSMIGCTVRLM 597 (626)
Q Consensus 539 -------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 597 (626)
....-|+..+..++..+....+++.|.++|++++.. .+...|.|..++...++.+
T Consensus 804 Tks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~----d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 804 TKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK----DPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCccchHHHHHHHHHHHhC
Confidence 001235667777888888888999999999998622 2233334777776654433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-14 Score=135.18 Aligned_cols=483 Identities=13% Similarity=0.062 Sum_probs=333.2
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
+.++|+.++.++.+--|. +...|. +|++...|+.|..+++...+. +.-+...|.+.- ..--.+|+.+
T Consensus 391 ~~~darilL~rAveccp~-s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa-------~LEE~ngn~~ 457 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQ-SMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAA-------KLEEANGNVD 457 (913)
T ss_pred ChHHHHHHHHHHHHhccc-hHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH-------HHHHhcCCHH
Confidence 455577777776665443 455554 445556677777777777654 122233333221 2334566666
Q ss_pred HHHHHHHHH----HHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcc
Q 040279 135 EATWLFKNM----IAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVD 210 (626)
Q Consensus 135 ~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (626)
...++..+- ...|+..+...|..=...|-..|..-.+..+....+..+.+. ..-..+|..-...|.+.+.++
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe----ed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE----EDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc----chhHhHHhhhHHHHHhcchHH
Confidence 666666553 334666677777777777777777777777777766655331 233556777777788888888
Q ss_pred hHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 211 KAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMI 290 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 290 (626)
-|+.+|....+. .+-+...|......--..|..++...+|++....-+ -....|......+-..|+...|..++.+..
T Consensus 534 carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 534 CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 888888877765 244556677666666667778888888888877633 245566666677777788888888888887
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 040279 291 QRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVIT 370 (626)
Q Consensus 291 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 370 (626)
+.... +...|...+..-.....++.|..+|.+.... .++...|..-+...--.++.++|++++++.++. ++.-...
T Consensus 612 ~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl 687 (913)
T KOG0495|consen 612 EANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKL 687 (913)
T ss_pred HhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHH
Confidence 76433 6667777777777888888888888877765 456777777666666678888888888887775 3323445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 040279 371 YNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK 450 (626)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (626)
|..+...+.+.++.+.|.+.|..=.+. ++-....|..+...--+.|++-.|..++++....+ |.+...|...+++-.+
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELR 765 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHH
Confidence 666667777777888877777665543 23334455566666667778888888888777655 5677788888888888
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
.|+.+.|..++.++++. ++.+...|..-|....+.++-......+++. ..|+..+..+...+....++++|.+.
T Consensus 766 ~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred cCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777764 3445666777776666666644444433332 45778888888899999999999999
Q ss_pred HHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 531 LHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 531 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
|.++++ +.|| -.+|..+...+.+.|.-++-.+++.+..
T Consensus 840 f~Ravk----~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 840 FERAVK----KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHc----cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999998 7786 4788888999999999888888888874
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-15 Score=137.18 Aligned_cols=485 Identities=13% Similarity=0.050 Sum_probs=304.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhh
Q 040279 44 FLHENCKSGIINLNEARYFFGYMTHMQPSPPISSF-NLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGN 122 (626)
Q Consensus 44 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 122 (626)
+...|-... -..+|+..++-+.+....|+.-.. ..+...+.+.+++..|+..|+-.+..-...+..+...++ ..
T Consensus 207 laqqy~~nd--m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil---~n 281 (840)
T KOG2003|consen 207 LAQQYEAND--MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL---NN 281 (840)
T ss_pred HHHHhhhhH--HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH---hh
Confidence 334444433 478899999988776666665433 336678889999999999999888652222333333333 35
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc------cccccHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGL------ISKTNIFSY 196 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~ 196 (626)
++..+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|++++....+++. ...|+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 678899999999999999998876 688777666777777789999999999999875432211 011222222
Q ss_pred HHHH-----HHHHhcCCcchHHHHHH---HHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 040279 197 SIII-----DSLCKEGLVDKAKELFL---EMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNV 268 (626)
Q Consensus 197 ~~l~-----~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 268 (626)
+.-+ ...-+.. -..|.+.+- ++..--+.|+-. . | .+-+++.++.-... +.-...-..
T Consensus 360 ~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa------~-----g-~dwcle~lk~s~~~--~la~dlei~ 424 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFA------A-----G-CDWCLESLKASQHA--ELAIDLEIN 424 (840)
T ss_pred HHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchh------c-----c-cHHHHHHHHHhhhh--hhhhhhhhh
Confidence 2111 1111111 111222111 111111111100 0 0 11112222111110 000001111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 040279 269 MIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL--VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKI 346 (626)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (626)
-...+.+.|+++.|.++++-+.+..-+.....-+.|...+.- ..++..|.++-+...... .-+......-.+....+
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 223467889999999998888776433333333334333333 335666766665555431 11222222222333457
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLF 426 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 426 (626)
|++++|.+.|++.+.....-....|+ +.-.+...|+.++|++.|-++... +..+..+...+...|....+..+|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 88999999999988752221112222 333466788999999888776432 2346667777888888888999999988
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040279 427 HMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP 506 (626)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (626)
.+.... ++.|+.+...|.+.|-+.|+-..|.+++-+--.. ++.+..+...|..-|....-+++++.+|++..- +.|
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 776643 4778889999999999999999998887665554 566788888888888888888999999988866 689
Q ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCC
Q 040279 507 NVVTFNTLMHGF-LQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEK 560 (626)
Q Consensus 507 ~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 560 (626)
+..-|..++..| .+.|++++|.++|+..-+ .++-|..++..|+..+...|-
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr---kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR---KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCccchHHHHHHHHHhccccc
Confidence 999998887754 568999999999999865 344577888888887766653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-14 Score=143.43 Aligned_cols=529 Identities=12% Similarity=0.047 Sum_probs=355.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYG 156 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 156 (626)
.....+..+...|++++|..++.++++. .|.....=. .++..|-.+|+.+++...+--+.-.. +-|...|.
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~------tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~ 211 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYY------TLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWK 211 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHH------HHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHH
Confidence 3334445556679999999999999987 443322222 23578999999999998777666553 44678999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHH----
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCT---- 232 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---- 232 (626)
.+.....+.|.+++|.-.|.++++.. |++...+---+..|-+.|+...|.+.|.++.....+.|..-..
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~-------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQAN-------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 99999999999999999999999987 6666666777889999999999999999999874322222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------------
Q 040279 233 TLIHGFCCAGNWEEVNGLFIEMLDL-GPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNP--------------- 296 (626)
Q Consensus 233 ~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------- 296 (626)
..++.+...++-+.|.+.++..... +-..+...++.++..+.+...++.+.............+
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 3456677778889999999888762 233456678899999999999999998888776622222
Q ss_pred ------------CHhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 297 ------------DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKG--CKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 297 ------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
+..+ -.++-++......+....+...+.+.. ..-+...|.-+..+|...|++..|+.+|..+...
T Consensus 365 ~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 2222 122334445555555555666666655 3335667888999999999999999999999988
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCC
Q 040279 363 GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLE--------MNKF 434 (626)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~ 434 (626)
....+...|..+...|...|.++.|...|+..+... +.+...-..|...+.+.|+.++|.+.++.+. ....
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 666678899999999999999999999999998753 3344455667778889999999999998854 2334
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC----------------------CCCCHhHHHHHHHHHHhcCCHHHH
Q 040279 435 EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKG----------------------LVPTVVTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------~~p~~~~~~~l~~~~~~~g~~~~A 492 (626)
.|+........+.+...|+.++=+.+...|+..+ .+-.......++.+-.+.++....
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 5556666667777888888877555444443210 111122223333344444432222
Q ss_pred HHHHHH------HHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHH---HHH-HHHHHHHccCC
Q 040279 493 NDFLLY------MEKNGCAPNV--VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDT---TFS-IVVDLLAKDEK 560 (626)
Q Consensus 493 ~~~~~~------~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~---~~~-~l~~~~~~~g~ 560 (626)
.+-... -...|+..+. ..+..++.++.+.+++++|..+...+.... -+.-+.. .+. ..+.+....++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~-~f~~~~~~~k~l~~~~l~~s~~~~d 681 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAY-IFFQDSEIRKELQFLGLKASLYARD 681 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHHHHhcCC
Confidence 221111 1112222221 355667778899999999999999998721 1222332 233 44456678999
Q ss_pred HhHHHHHHHHHHhh-ccccccccCCchhhhhhhheeccCC---ccchhccccCCCCC-CchhHHHHHHh
Q 040279 561 YHECSAVSKSSYRA-CLYVTIFQPSSLGSMIGCTVRLMPQ---PEMSDTLGDDGDGN-AGPIILSAVLL 624 (626)
Q Consensus 561 ~~~A~~~~~~~~~~-~~~~~~~~p~~~~~l~~~~~~~~~~---~~~~~~~~~~~p~~-~~~~~~~~~~~ 624 (626)
+.+|.+.++.+... ..+..+.++..|...++.......+ .....++.-..|++ +..+++.+..+
T Consensus 682 ~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~ 750 (895)
T KOG2076|consen 682 PGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNL 750 (895)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhH
Confidence 99999999998643 2233445556676443332222222 22234556677777 45555444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-14 Score=128.86 Aligned_cols=442 Identities=15% Similarity=0.188 Sum_probs=304.9
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHH--HHhcCChhHH-HHHHHHHHHCCCCCCHhhHHHH
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGA--VAKNRHYDAV-ISFYRKLVSIGLLPDFLTLNIL 116 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~g~~p~~~~~~~l 116 (626)
+-+.++.... ++ .+.++.-+++.|...+...+...-..|... |..+.+..-| .+.|-.|...|-.. ..+|
T Consensus 118 ~E~nL~kmIS-~~--EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--- 190 (625)
T KOG4422|consen 118 TENNLLKMIS-SR--EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--- 190 (625)
T ss_pred chhHHHHHHh-hc--ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence 4455555444 44 799999999999998877777766555543 3344444322 23444444443221 1222
Q ss_pred HHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHH
Q 040279 117 INCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSY 196 (626)
Q Consensus 117 l~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (626)
+.|.+. . ++-+.. +-+..++..+|.+.|+-...+.|.+++++..... .+.+..++
T Consensus 191 ------------K~G~vA--d-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aF 245 (625)
T KOG4422|consen 191 ------------KSGAVA--D-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAF 245 (625)
T ss_pred ------------ccccHH--H-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhh
Confidence 234433 3 333332 4467889999999999999999999999988766 57888999
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHH
Q 040279 197 SIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEE----VNGLFIEMLDLGPRPNLLTFNVMIDC 272 (626)
Q Consensus 197 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (626)
|.+|.+-.-. .-.+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..
T Consensus 246 N~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~ 321 (625)
T KOG4422|consen 246 NGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKN 321 (625)
T ss_pred hhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence 9998764433 227899999999999999999999999999998865 46778889999999999999999999
Q ss_pred HHhcCCHHH-HHHHHHHHHh----cCCC----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC---hhhH
Q 040279 273 LCKGGKINE-ANGLLELMIQ----RGLN----PDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKG----CKHT---VVSY 336 (626)
Q Consensus 273 ~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~ 336 (626)
+.+.++..+ +..++..+.. ..++ .|...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|
T Consensus 322 f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYy 401 (625)
T KOG4422|consen 322 FKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYY 401 (625)
T ss_pred hcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHH
Confidence 988888644 4444444332 2222 245567778888889999999988766554331 1222 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040279 337 NILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN 416 (626)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (626)
..+....++....+.-...|+.+.-.-.-|+..+...++++....+.++-..+++..+...|..-+......++..+++.
T Consensus 402 r~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 402 RKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 66777888888999999999999988788899999999999999999999999999998876444444444444444433
Q ss_pred C-CH--------H-----HHHHHHH-------HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC-CCCHh
Q 040279 417 N-CV--------Q-----EAVKLFH-------MLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL-VPTVV 474 (626)
Q Consensus 417 g-~~--------~-----~A~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~ 474 (626)
. +. . -|..+++ ++... .......+.+.-.+.+.|..++|.++|..+.+++. .|-..
T Consensus 482 k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 482 KLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 2 11 1 1122221 22222 34556678888889999999999999999866432 23344
Q ss_pred HHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 475 TYS---IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 475 ~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
..| .++..-...+....|..+++-|...+.+.-...-+.+...|.
T Consensus 560 ~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 560 LLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 455 455566777889999999999987653332223344444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-13 Score=123.77 Aligned_cols=482 Identities=9% Similarity=0.055 Sum_probs=346.6
Q ss_pred HHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHH
Q 040279 61 YFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLF 140 (626)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~ 140 (626)
+-|+.-+... ..+...|-..++.-..++++..|.++|++++.. |......-|. .+..-.+...+..|..++
T Consensus 60 kefEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdv----d~r~itLWlk----Yae~Emknk~vNhARNv~ 130 (677)
T KOG1915|consen 60 KEFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDV----DYRNITLWLK----YAEFEMKNKQVNHARNVW 130 (677)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc----ccccchHHHH----HHHHHHhhhhHhHHHHHH
Confidence 3444444332 235667777777778889999999999999843 3222222221 124456778889999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHh
Q 040279 141 KNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMK 220 (626)
Q Consensus 141 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (626)
++.... ++.-...|--.+..--..|++..|.++|++-.+- .|+...|.+.+..-.+.+.++.|..++++..
T Consensus 131 dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~eqaW~sfI~fElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 131 DRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDEQAWLSFIKFELRYKEIERARSIYERFV 201 (677)
T ss_pred HHHHHh-cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 998876 2222334666666677789999999999998874 5889999999999999999999999999988
Q ss_pred hCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-
Q 040279 221 GRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL-GP-RPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD- 297 (626)
Q Consensus 221 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 297 (626)
-. .|++..|......=.+.|....|..+|+...+. |- .-+...+.++...-..+..++.|.-+|+-.+.. ++.+
T Consensus 202 ~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~r 278 (677)
T KOG1915|consen 202 LV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGR 278 (677)
T ss_pred ee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccc
Confidence 74 689999998888888999999999999888763 11 112334555555556677888899999888876 2323
Q ss_pred -HhhHHHHHHHHHhcCChHHHHHH--------HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 040279 298 -RFTYNSLMDGYCLVGRIDTAREI--------FLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTV 368 (626)
Q Consensus 298 -~~~~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 368 (626)
...|......--+-|+....... ++.+...+ +.|-.+|-..++.-...|+.+...++|++++.. ++|-.
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ 356 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPAS 356 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchh
Confidence 34455555544455665444433 33344443 457788888888888899999999999999976 44422
Q ss_pred --hhHHHHH--------HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCC
Q 040279 369 --ITYNTLL--------SGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG----LCKNNCVQEAVKLFHMLEMNKF 434 (626)
Q Consensus 369 --~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~ 434 (626)
..|...| -.-....+.+.+.++|+..++. ++....|+.-+=-. -.++.++..|.+++...+. .
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~ 433 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--K 433 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--c
Confidence 1121111 1123568889999999998873 44445555544333 3467899999999987764 4
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHH
Q 040279 435 EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG-CAPNVVTFNT 513 (626)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ 513 (626)
.|...+|...|..-.+.+++|....++++.++.+. -+..+|...+..-...|+.+.|..+|.-+++.. +......|..
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 67888999999999999999999999999999753 367889888888888999999999999998753 1122345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHH-----ccC-----------CHhHHHHHHHHHHh
Q 040279 514 LMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLA-----KDE-----------KYHECSAVSKSSYR 573 (626)
Q Consensus 514 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 573 (626)
.+..=...|.++.|..+|+.+++ ..+...+|...+..-. ..| ....|.++|+++..
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~----rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLD----RTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHH----hcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 66666789999999999999988 5555567766665433 334 56778888888753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7e-14 Score=129.46 Aligned_cols=414 Identities=12% Similarity=-0.000 Sum_probs=263.1
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGVRPD-VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIII 200 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (626)
..++-+.++|.+++|++.|.+.+.. .|+ +.-|.....+|...|+|++.++--.+.++.+ |.-+..+..-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-------P~Y~KAl~RRA 190 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-------PDYVKALLRRA 190 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-------cHHHHHHHHHH
Confidence 5577888999999999999999987 667 6678888889999999999999988888866 44456666777
Q ss_pred HHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCChhhHHHHHHHHHhcC
Q 040279 201 DSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLD-LG--PRPNLLTFNVMIDCLCKGG 277 (626)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~ 277 (626)
.++-+.|++++|+.=..-.--.+--.+..+--.+=+.+- ..|....++-.+ .+ +-|+.....+....+...-
T Consensus 191 ~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred HHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 788888888877643222211110111111111111111 112222222222 11 2344444344333321110
Q ss_pred CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH----Hhc-CChHHHHHHHHHHHhc---CC---CCC------hhhHHHHH
Q 040279 278 KINEANGLLELMIQRGLNPDRFTYNSLMDGY----CLV-GRIDTAREIFLSMHSK---GC---KHT------VVSYNILI 340 (626)
Q Consensus 278 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~-g~~~~a~~~~~~~~~~---~~---~~~------~~~~~~l~ 340 (626)
. .....+.......+..++ ... ..+..|...+.+-... .. ..| ..+...-.
T Consensus 266 ~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 266 K------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred c------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 0 000000000111111111 000 1122332222221100 00 011 11222222
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 040279 341 NGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQ 420 (626)
Q Consensus 341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (626)
..+.-.|+.-.|..-|+..+..... +...|..+..+|....+.++-...|.+....+ +.++.+|..-.+.+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 3344578888999999998886433 23337777888999999999999999998765 446667777778888888999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 421 EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYME 500 (626)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (626)
+|..=|+..+... |.+...|..+..+..+.+++++++..|++..++ ++..++.|+.....+..++++++|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999888765 556777778888888899999999999999886 55568899999999999999999999999998
Q ss_pred HCCCCCC-------HHHHHHH-HHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 501 KNGCAPN-------VVTFNTL-MHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 501 ~~~~~p~-------~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
+. .|+ ...+..- +-.+.-.+++..|.++++++++ +.|. ...+..|+....+.|+.++|+++|++.
T Consensus 490 ~L--E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e----~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE----LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hh--ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc----cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 74 333 2222111 1112234889999999999998 8885 567889999999999999999999986
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-12 Score=118.06 Aligned_cols=366 Identities=11% Similarity=0.004 Sum_probs=239.9
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCC
Q 040279 148 VRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA 227 (626)
Q Consensus 148 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 227 (626)
...|...+-..+..+-+.|....|+..|...+... |-.-..|..|..... +. ++...... |.+.+
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-------P~~W~AWleL~~lit---~~----e~~~~l~~-~l~~~ 224 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-------PWFWSAWLELSELIT---DI----EILSILVV-GLPSD 224 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-------CcchHHHHHHHHhhc---hH----HHHHHHHh-cCccc
Confidence 34566666666777778888999999998887654 444555555444332 22 22222221 11212
Q ss_pred cchH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHhhHHH
Q 040279 228 VVVC--TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLN--PDRFTYNS 303 (626)
Q Consensus 228 ~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 303 (626)
.... --+..++-...+.+++.+-.......|.+-+...-+....+.....++++|+.+|+++.+...- -|..+|..
T Consensus 225 ~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN 304 (559)
T KOG1155|consen 225 MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSN 304 (559)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhH
Confidence 1111 1234455566677788877777777776655555555555666778888999999888887311 14456655
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 040279 304 LMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQ 383 (626)
Q Consensus 304 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (626)
++-. +..+- .+.++..-...--+--+.|...+.+-|+-.++.++|...|++.++.+. .....|+.+.+-|....+
T Consensus 305 ~LYv--~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 305 VLYV--KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred HHHH--HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcc
Confidence 5432 22211 122222211111123456777778888888888888888888887632 245667777888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 040279 384 AGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK 463 (626)
Q Consensus 384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (626)
...|.+-++...+.. +.|...|-.+.++|.-.+.+.-|+-.|++..... |.|...|.+|.++|.+.++.++|++.|.+
T Consensus 380 t~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 380 THAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred cHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888888888754 5577788888888888888888888888887765 66888888888888888888888888888
Q ss_pred cccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 464 LPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN----GC-AP-NVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 464 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
....|.. +...+..++..|-+.++.++|...|++.++. |. .| .......|..-+.+.+++++|..+......
T Consensus 458 ai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 458 AILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 8876432 5577888888888888888888888777652 21 22 122233345556677777777776666654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-13 Score=133.51 Aligned_cols=251 Identities=9% Similarity=0.030 Sum_probs=161.5
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 040279 309 CLVGRIDTAREIFLSMHSKGCKHTVVSYN--ILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGY 386 (626)
Q Consensus 309 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (626)
.+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++++.+.. +.++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 22222111 22344555555666666555555542 2244455555555666666666
Q ss_pred HHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 040279 387 AQKLFDEMKLYNVEPDL-------STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWE 459 (626)
Q Consensus 387 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 459 (626)
|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+.- +.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666554432211 122222333333445566666666654332 4577788888888889999999999
Q ss_pred HHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 040279 460 LFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER 539 (626)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (626)
++++..+. .|+.... ++.+....++.+++.+..+...+.. +-|...+..+.+.|.+.+++++|.+.|+++.+
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--- 356 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--- 356 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---
Confidence 98888774 4555322 2333445688899999998888763 45566778888899999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 540 NLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 540 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..|+...+..+..++.+.|+.++|.+++++.+
T Consensus 357 -~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 357 -QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred -cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78998888889999999999999999988874
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-12 Score=122.77 Aligned_cols=267 Identities=10% Similarity=0.010 Sum_probs=138.3
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 040279 297 DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLS 376 (626)
Q Consensus 297 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 376 (626)
+......-.+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .|....+|-.+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33334444445555566666666666655543 334444444455555556555555555555554 3334555655555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 040279 377 GLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDN 456 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 456 (626)
.|...|+..+|.+.|.+....+ +.=...|..+...++-.|..++|+..+....+.- +-...-+-.+..-|.+.+++..
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 5555566666666666554322 1112345555555666666666666555443221 1111112223334555566666
Q ss_pred HHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 457 AWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN--GC---A-PNVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 457 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~-p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
|.+.|.+.... .+-|+..++.+.......+.+.+|..+|+..... .+ . --..+++.|+.+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 66666665543 1224555555555555555666666666555421 00 0 1223455566666666666666666
Q ss_pred HHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 531 LHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 531 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+++.+. ..| +..++..++-+|...|+++.|.+.|.+++
T Consensus 478 ~q~aL~----l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 478 YQKALL----LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHH----cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 666655 444 45556666666666666666666666654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-13 Score=133.34 Aligned_cols=291 Identities=10% Similarity=0.024 Sum_probs=165.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 040279 275 KGGKINEANGLLELMIQRGLNPDR-FTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAM 353 (626)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 353 (626)
..|+++.|.+.+....+. .|+. ..+-....+..+.|+++.|.+++.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 345555555555544443 2222 1222223444445555555555555544321111112222344455555566666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHH
Q 040279 354 SLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGL---CKNNCVQEAVKLFHMLE 430 (626)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~ 430 (626)
..++.+.+.. +.+......+...+...|+++.|.+++..+.+.+..+.......-..++ ...+..+++...+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5555555542 2244445555555666666666666666665554322111111111111 11122222223333333
Q ss_pred HCCC---CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 431 MNKF---EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVT---YSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 431 ~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
.... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 2221 2367778888888888888888888888888752 34331 1112222334577888899888888752
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 505 APNV--VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 505 ~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+-|+ ....++++.+.+.|++++|.++|++... ....|+...+..++..+.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a--~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA--CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH--hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345 5677899999999999999999995333 23789998889999999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-12 Score=117.35 Aligned_cols=365 Identities=12% Similarity=0.034 Sum_probs=258.0
Q ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH--H
Q 040279 191 TNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFN--V 268 (626)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ 268 (626)
.|...+-...-.+.+.|..+.|.+.|...... -+..|.+-+....-..+.+.+. .... +.+.+..-+. -
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHHHH
Confidence 44444445555666777888888888777654 2334443333222222222221 1111 1221222111 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhc
Q 040279 269 MIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCK--HTVVSYNILINGYCKI 346 (626)
Q Consensus 269 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 346 (626)
+..++....+.+++..-.+.....|++.+...-+....+.....|+|.|+.+|+++.+..+- -|..+|+.++-. +.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hh
Confidence 34455566678888888888888888777766666667777889999999999999987321 145666665533 22
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLF 426 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 426 (626)
.+.. +..+-+-.-.-.+-.+.|...+...|.-.++.++|...|+..++.+ +.....|+.+.+-|....+...|+.-+
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2221 1222211111122345677778888999999999999999999864 334567888888999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040279 427 HMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP 506 (626)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (626)
+...+.. |.|-..|-.|.++|.-.+...-|+-+|++..+.. +.|...|.+|+.+|.+.++.++|++.|.+....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999876 7789999999999999999999999999999852 4468999999999999999999999999999986 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--CCCCCCCC--HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 507 NVVTFNTLMHGFLQNNKTSKVVELLHKMAE--PERNLVPD--DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+...+..+...|-+.++.++|..+|++.++ ...|...+ .....-|..-+.+.+++++|..+.....
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 778999999999999999999999999876 11222222 2333445666789999999999888774
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-16 Score=145.53 Aligned_cols=259 Identities=17% Similarity=0.159 Sum_probs=107.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 040279 303 SLMDGYCLVGRIDTAREIFLSMHSKG-CKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQA 381 (626)
Q Consensus 303 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (626)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|+..++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44667778888888888886544443 2334555555666666788888888888888876433 45556666666 678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 040279 382 GQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK-FEFGIEIFNCLIDGLCKAGRLDNAWEL 460 (626)
Q Consensus 382 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 460 (626)
+++++|.+++....+. .++...+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776543 3456667777888888899999998888876432 345677888888888999999999999
Q ss_pred HHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 040279 461 FHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER 539 (626)
Q Consensus 461 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (626)
+++.++. .| |....+.++..+...|+.+++.+++....+.. +.|+..+..+..+|...|++++|+.++++..+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--- 242 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--- 242 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH---
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc---
Confidence 9998885 34 47778888888888999999888888887763 55667788888899999999999999999887
Q ss_pred CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 540 NLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 540 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..| |+.+...++.++...|+.++|.++.+++.
T Consensus 243 -~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 -LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HSTT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccccc
Confidence 667 67778888999999999999999988874
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-12 Score=128.85 Aligned_cols=252 Identities=9% Similarity=0.022 Sum_probs=136.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHhhHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 040279 274 CKGGKINEANGLLELMIQRGLNPDRFTYN--SLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEE 351 (626)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (626)
...|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+... .+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 22322111 223444555555555555555555432 234445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 352 AMSLYRQIISNGVRQTV-------ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 352 A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
|.+++..+.+.+..++. ..|..++.......+.+...++++...+. .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555554332111 01122222222333344444555544332 23455566666677777777777777
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 425 LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
++++..+. +++.... ++.+....++.+++.+..+...+.. +-|...+..+...+.+.|++++|.+.|+.+.+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 77666653 3344222 1222334467777777777766642 234556667777777777777777777777763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 505 APNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.|+...+..+...+.+.|+.++|.+++++...
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57777777777777777777777777776644
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-11 Score=110.42 Aligned_cols=230 Identities=10% Similarity=0.102 Sum_probs=122.7
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H----HhcCCHHHH
Q 040279 348 NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG-L----CKNNCVQEA 422 (626)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~----~~~g~~~~A 422 (626)
+-+.|++++-.+.+. - +..-..++-.|.+.++..+|..+.+++.- ..|-......++.+ + .......-|
T Consensus 269 ngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred CCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 345566555554442 1 12223445556666777777666665531 12222222222211 1 111223445
Q ss_pred HHHHHHHHHCCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 423 VKLFHMLEMNKFEFGI-EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 423 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
.+.|+..-..+...|. .--.++...+.-..++++.+.+++.+...-...|...+ .+..+++..|++.+|+++|-++..
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcC
Confidence 5555544444333222 22233444445556677777777766653222233333 466777777888888888877765
Q ss_pred CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH-HHHHHHHHHHHccCCHhHHHHHHHHHHhhccccc
Q 040279 502 NGCAPNVVTF-NTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD-TTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVT 579 (626)
Q Consensus 502 ~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 579 (626)
-.++ |..+| ..|.++|.++++++-|.+++-++-. +.+. ..+..+++.+.+.+.+=-|.+.|......
T Consensus 422 ~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l----- 490 (557)
T KOG3785|consen 422 PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT-----PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL----- 490 (557)
T ss_pred hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc-----
Confidence 4434 34444 4555677788888888777766643 2222 33445566677777777666666665321
Q ss_pred cccCCchhhhhhhhee
Q 040279 580 IFQPSSLGSMIGCTVR 595 (626)
Q Consensus 580 ~~~p~~~~~l~~~~~~ 595 (626)
...|..|..-.|+|..
T Consensus 491 DP~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 491 DPTPENWEGKRGACAG 506 (557)
T ss_pred CCCccccCCccchHHH
Confidence 3355558777776643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-12 Score=128.76 Aligned_cols=293 Identities=10% Similarity=0.001 Sum_probs=169.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 040279 240 CAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTARE 319 (626)
Q Consensus 240 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 319 (626)
..|+++.|.+.+.+..+.... ....+-....++...|+.+.|.+.+.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456666666666665554222 1223334445556666677776666666554211111222333555666677777777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHH---HHHcCCHHHHHHHHHHHH
Q 040279 320 IFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYN-TLLSG---LFQAGQAGYAQKLFDEMK 395 (626)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~a~~~~~~~~ 395 (626)
.++.+.+..+. +......+...+.+.|++++|.+.+..+.+.+.. +...+. .-..+ ....+..+...+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77666666422 4455666666666777777777777776665433 222221 11111 122222222233333333
Q ss_pred hCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHHcCCHHHHHHHHHhcccCCCCC
Q 040279 396 LYN---VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEI-FNCLIDGLCKAGRLDNAWELFHKLPQKGLVP 471 (626)
Q Consensus 396 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (626)
+.. .+.+...+..+...+...|+.++|.+++++..+..+...... .....-.....++.+.+.+.+++..+.. +-
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~ 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DD 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CC
Confidence 321 123666777777788888888888888887776542221111 1111112233567777888887777642 22
Q ss_pred CH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 472 TV--VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 472 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34 566688888888888888888888544333467887788888888888888888888888654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-12 Score=120.10 Aligned_cols=221 Identities=18% Similarity=0.117 Sum_probs=172.5
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 040279 308 YCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYA 387 (626)
Q Consensus 308 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 387 (626)
+.-.|+.-.|..-|+...+.... +...|-.+...|....+.++....|.+..+.+ +.++.+|..-..++.-.++++.|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44568888888889888887533 22337777788889999999999999988874 34778888888888888999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 040279 388 QKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467 (626)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (626)
..-|++..+.. +.+...|..+..+..+.+.++++...|++.++. +|..++.|+...+.+..+++++.|.+.|+...+.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998753 334556666666667888999999999998865 4778899999999999999999999999998774
Q ss_pred CCCCC---------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 468 GLVPT---------VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 468 ~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.|+ +.+.-+++..- -.+++..|..++++..+.+ +.....+..|...-.+.|+.++|+++|++...
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred --ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 233 11222223222 3489999999999999864 33567899999999999999999999999876
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-12 Score=112.77 Aligned_cols=229 Identities=16% Similarity=0.167 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
+.+.|.+.|-++.+.++. +..+..+|++.+.+.|..+.|+++.+.+... || .|++.=+.+.-.+++-|...|-++
T Consensus 50 Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pd-lT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PD-LTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CC-CchHHHHHHHHHHHHHHHHhhhhh
Confidence 456666666666554433 4455555666666666666666666666542 33 222222222334555666666666
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKE 214 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (626)
.|+.+|..+...+ .--..+...|+..|-...+|++|+++-+++.+.+..+.. ..-...|.-|...+....+++.|..
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~--~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR--VEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch--hHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 6666666665432 112344555666666666666666666655554411000 0001223334444444445555555
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 215 LFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
++.+..+.+ +..+..-..+.+.....|+++.|.+.++.+.+.++.--..+...+..+|...|+.++....+..+.+.
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 555554432 11223333344444455555555555555554433333334444445555555555555554444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-11 Score=115.54 Aligned_cols=283 Identities=14% Similarity=0.035 Sum_probs=195.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILIN 341 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (626)
+......-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++...- +..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 45555556666777777888888877777663 4444455555567777777766666666666553 335677777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040279 342 GYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQE 421 (626)
Q Consensus 342 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (626)
-|...|+..+|.+.|.+....... =...|-.+...|.-.+..+.|...+....+. .+-....+..+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 777778888888888777654211 2345677777777778888887777776553 11122223334445777788888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC--CCC----CCHhHHHHHHHHHHhcCCHHHHHHH
Q 040279 422 AVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK--GLV----PTVVTYSIMIHGLCRKGKLEKANDF 495 (626)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A~~~ 495 (626)
|.+.|.+..... |.|+.+.+.+.-.....+.+.+|..+|+..+.. ... --..+++.|+.+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888887777554 667777777777777788888888888776531 011 1244678888888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Q 040279 496 LLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDL 554 (626)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 554 (626)
+++.+... +.+..++.+++-.|...|+++.|++.|.+++- +.|+..+...++..
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~----l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA----LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh----cCCccHHHHHHHHH
Confidence 98888863 66788888888888888999999999998887 88877555544443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-12 Score=112.15 Aligned_cols=292 Identities=16% Similarity=0.173 Sum_probs=208.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC
Q 040279 129 VENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL 208 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (626)
-.++.++|..+|-+|.+.+ +.+..+..+|.+.|-..|..+.|+.+++.+.+.. +........+...|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHHhhh
Confidence 3578899999999999864 3355677889999999999999999999988643 11112223345567788889999
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHH
Q 040279 209 VDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNL----LTFNVMIDCLCKGGKINEANG 284 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 284 (626)
+|.|+++|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+.+..+.. ..|..+...+....+++.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999998864 234567788899999999999999999988887655432 245556666667788888898
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040279 285 LLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGV 364 (626)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 364 (626)
++.+..+.+.+ ....--.+.+.....|+++.|.+.++.+.+.+...-..+...+..+|.+.|+.++....+..+.+...
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 88888876422 33333455677888899999999999988886555566777888888889999888888888887633
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 040279 365 RQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK---NNCVQEAVKLFHMLE 430 (626)
Q Consensus 365 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 430 (626)
....-..+........-.+.|..++.+-.+. +|+...+..+++.... .|...+....++.|.
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3333344444444444455555554444433 6888888888876543 334555555555555
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-09 Score=105.29 Aligned_cols=496 Identities=15% Similarity=0.146 Sum_probs=307.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhHhcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhh
Q 040279 45 LHENCKSGIINLNEARYFFGYMTHMQPS-PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNK 123 (626)
Q Consensus 45 l~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l 123 (626)
+.....++ ++..-+..|++++..-|. .....|...+......|-++-++.+|++.++. .|.. .+-.|
T Consensus 109 lq~l~~Q~--~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyi------ 176 (835)
T KOG2047|consen 109 LQFLIKQG--LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYI------ 176 (835)
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHH------
Confidence 34444444 888999999998876543 34568999999888999999999999999875 4443 33333
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCCCccccccHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFG------VRPDVITYGTLINGFCRTGNLSV---ALRLHKKMVSGDYENGLISKTNIF 194 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~ 194 (626)
..++..+++++|.+.+..++... .+.+-..|..+-....++-+.-. ..++++.+...- ...-..
T Consensus 177 -e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf------tDq~g~ 249 (835)
T KOG2047|consen 177 -EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF------TDQLGF 249 (835)
T ss_pred -HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC------cHHHHH
Confidence 34567889999999998886542 12334456666555555443322 334444444432 122345
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhc----------------C------CHHHHHHHHH
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCA----------------G------NWEEVNGLFI 252 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~------~~~~a~~~~~ 252 (626)
.|.+|.+.|.+.|.+++|.++|++.... ..+..-|..+.+.|+.- + +++-...-|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 7899999999999999999999998765 23444455555554421 1 1223334444
Q ss_pred HHHHCCC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------HhhHHHHHHHHHhcCChH
Q 040279 253 EMLDLGP-----------RPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD------RFTYNSLMDGYCLVGRID 315 (626)
Q Consensus 253 ~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~ 315 (626)
.+.+..+ +.++..|..-+. ...|+..+....+.+..+. +.|. ...|..+.+.|-..|+.+
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 4443321 113333433333 2356677777777777654 2222 235677888899999999
Q ss_pred HHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------------ChhhHHHHH
Q 040279 316 TAREIFLSMHSKGCKHT---VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQ-----------------TVITYNTLL 375 (626)
Q Consensus 316 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~l~ 375 (626)
.|..+|++..+...+.- ..+|......-.+..+++.|+++++......-.| +...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999887644322 3445555566667888999999988876532111 123345555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHH---c
Q 040279 376 SGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFG-IEIFNCLIDGLCK---A 451 (626)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~ 451 (626)
..--..|-++....+|+.+....+. ++.........+-...-++++.+++++-...-..|+ ..+|+..+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 5556678888888899998875542 222222222233445567888888876554332333 3466666665554 2
Q ss_pred CCHHHHHHHHHhcccCCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 040279 452 GRLDNAWELFHKLPQKGLVPTVV--TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV--VTFNTLMHGFLQNNKTSKV 527 (626)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a 527 (626)
..++.|..+|++.++ |.+|... .|......--+.|....|+.+++++... +++.. ..|+..+.-....=-....
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 468889999999888 5555532 2222223334568888888888887654 34432 3666666544433334566
Q ss_pred HHHHHHhhcCCCCCCCCHHHHH---HHHHHHHccCCHhHHHHHHHHH
Q 040279 528 VELLHKMAEPERNLVPDDTTFS---IVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 528 ~~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
..+|+++++ .-|+...-. ..++.-.+.|..+.|..+|...
T Consensus 642 R~iYekaIe----~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 642 REIYEKAIE----SLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHHH----hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 777888877 566654433 2333445678888888877664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-13 Score=130.07 Aligned_cols=288 Identities=15% Similarity=0.069 Sum_probs=203.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcc
Q 040279 131 NRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVD 210 (626)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (626)
-+..+|+..|+.+... +.-.......++.+|...+++++|.++|+.+.+.... ...+..+|.+.+..+-+.-..
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~----rv~~meiyST~LWHLq~~v~L- 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY----RVKGMEIYSTTLWHLQDEVAL- 406 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cccchhHHHHHHHHHHhhHHH-
Confidence 3467888888885544 3334466677888888888888888888888776521 234566777766654332111
Q ss_pred hHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 211 KAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMI 290 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 290 (626)
--+-+++.+.. +-.+.+|..+.++|.-+++.+.|++.|++.++.++. ...+|+.+..-+....++|.|...|+..+
T Consensus 407 --s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 407 --SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred --HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 11122222221 336778888888888888888888888888875332 67788888888888888888888888876
Q ss_pred hcCCCCCHhhHH---HHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040279 291 QRGLNPDRFTYN---SLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT 367 (626)
Q Consensus 291 ~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 367 (626)
.. |...|+ -+...|.+.++++.|+-.|+...+.+.. +.+....+...+.+.|+.|+|+++++++...... |
T Consensus 483 ~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 483 GV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-N 556 (638)
T ss_pred cC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-C
Confidence 54 444444 4556788888888888888888877533 5666777777888888888888888888876433 5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE 435 (626)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (626)
+..--..+..+...+++++|+..++++++. ++.+...+..+...|.+.|+.+.|+.-|.-+.+..++
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 555555667777788888888888888875 2344557777788888888888888888877766543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-10 Score=108.92 Aligned_cols=500 Identities=11% Similarity=0.083 Sum_probs=282.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSI-GLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDV 152 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (626)
-+..|-..++.+.++|+...-+..|+..+.. .+.-....|...+. -....+-++-++.++++.++. ++
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~-------Fv~~~~lPets~rvyrRYLk~----~P 169 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLK-------FVESHGLPETSIRVYRRYLKV----AP 169 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHH-------HHHhCCChHHHHHHHHHHHhc----CH
Confidence 3467888899999999999999999988753 22223345555542 344567788999999999976 44
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCc---chHHHHHHHHhhCCCCCC--
Q 040279 153 ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLV---DKAKELFLEMKGRGINPA-- 227 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~-- 227 (626)
..-.-.+..+++.+++++|.+.+...+..+..-+...+.+-..|.-+.....+..+. -...+++..+..+ -+|
T Consensus 170 ~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~ 247 (835)
T KOG2047|consen 170 EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQL 247 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHH
Confidence 457788899999999999999999988655332223456666777777777665443 2344455555443 233
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHhhHHHHHH
Q 040279 228 VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL-NPDRFTYNSLMD 306 (626)
Q Consensus 228 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~ 306 (626)
...|++|...|.+.|.+++|.++|++.++. ..+..-|..+.++|+.-..-.-+.. ++...+.+. +-+..
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~-me~a~~~~~n~ed~~------- 317 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAK-MELADEESGNEEDDV------- 317 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHH-HhhhhhcccChhhhh-------
Confidence 357899999999999999999999998874 2244556666666654322111111 110001111 11111
Q ss_pred HHHhcCChHHHHHHHHHHHhc-----------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------hh
Q 040279 307 GYCLVGRIDTAREIFLSMHSK-----------GCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT------VI 369 (626)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~ 369 (626)
+++-....|+.+... .-+.+...|..-+..+ .|+..+.+..|.++.+. +.|. ..
T Consensus 318 ------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 318 ------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGT 388 (835)
T ss_pred ------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhh
Confidence 111222222222221 1122334444333332 45566666666666554 2221 23
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------
Q 040279 370 TYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPD---LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE----------- 435 (626)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------- 435 (626)
.|..+...|-..|+.+.|..+|++..+...+.- ..+|..-...-.+..+++.|+++++......-+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 455666666677777777777777665432211 123333333444556666666666554422111
Q ss_pred c------CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-
Q 040279 436 F------GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV- 508 (626)
Q Consensus 436 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 508 (626)
+ +..+|...++.....|-++....+++++.+..+. ++...-..+..+-.+.-++++.++|++-+..=-.|+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 2234455555555667777777777777775443 3333333333445556677777777776654223443
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHhhcCCCCCCCC-HHH-HHHHHHHHHccCCHhHHHHHHHHHHhhccccccccC
Q 040279 509 VTFNTLMHGFLQ---NNKTSKVVELLHKMAEPERNLVPD-DTT-FSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQP 583 (626)
Q Consensus 509 ~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~p~-~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p 583 (626)
..|+..+..+.+ ..+.+.|..+|+++++ +.+|. ..+ |...+..-.+-|.-..|.++++++-.+ .++
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~---~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~------v~~ 618 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD---GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA------VKE 618 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc------CCH
Confidence 356665554432 2356778888888876 44453 222 223333334567777777777776321 122
Q ss_pred C----chhhhhhhheeccCC---ccchhccccCCCCCCc
Q 040279 584 S----SLGSMIGCTVRLMPQ---PEMSDTLGDDGDGNAG 615 (626)
Q Consensus 584 ~----~~~~l~~~~~~~~~~---~~~~~~~~~~~p~~~~ 615 (626)
. +|..++...--..|- .+..+++++.-|++.+
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 2 244444332222232 4555677776666544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-15 Score=138.58 Aligned_cols=257 Identities=17% Similarity=0.132 Sum_probs=74.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFG-VRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
..+.+.|++++|++++++..... .+.+...|..+.......++++.|+..++++...+ +.++..+..++..
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-------~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-------KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccccccccccc-
Confidence 45556666666666664433322 12234444455555556666666666666666554 2344445555555
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHH
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLG-PRPNLLTFNVMIDCLCKGGKINEA 282 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a 282 (626)
...+++++|.++++...++ .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4666666666666555443 2344555556666666666666666666654322 233445555566666666666666
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 283 NGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
++.+++..+.. +-|......++..+...|+.+++.++++...+.. +.+...+..+..++...|+.++|+..+++..+.
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 66666666552 1134455555566666666666555555555442 234445555566666666666666666665554
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 040279 363 GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEM 394 (626)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 394 (626)
.+.|+.....+..++...|+.++|.++..+.
T Consensus 244 -~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 244 -NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -STT-HHHHHHHHHHHT---------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 2235555555556666666666666555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-11 Score=112.95 Aligned_cols=285 Identities=15% Similarity=0.111 Sum_probs=177.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 040279 276 GGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSL 355 (626)
Q Consensus 276 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 355 (626)
.|++.+|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+..+....++....-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 445555555555544443221 2223333344444555555555555554442223333344444444555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 356 YRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDL-------STYNILIDGLCKNNCVQEAVKLFHM 428 (626)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (626)
+.++.+.+.. ++........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555554322 3444455555555566666666666655555443332 3455555555555555555566666
Q ss_pred HHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 429 LEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV 508 (626)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (626)
....- ..++..-.+++.-+...|+.++|.++.++..+++..|+.. ....+.+-++.+.-++..++-.+.. +.++
T Consensus 255 ~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 55432 4567777788888888999999999888888876555521 1224556677777777777666542 4456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 509 VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
-.+.+|+..|.+.+.|.+|.++|+.+.+ ..|+..++..++.++.+.|+..+|.+..++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~----~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK----LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7888899999999999999999998888 78999999999999999999999999998876
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-13 Score=130.63 Aligned_cols=286 Identities=13% Similarity=0.021 Sum_probs=200.2
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHhhHHHHHHHHHhcCChHHHHHH
Q 040279 243 NWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL--NPDRFTYNSLMDGYCLVGRIDTAREI 320 (626)
Q Consensus 243 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~ 320 (626)
+.++|...|..+... +.-+..+...+.++|...+++++|+++|+.+.+... .-+...|.+.+-..-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467888888885443 333445666778888888888888888888877521 1144555555432211 222333
Q ss_pred HHH-HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 040279 321 FLS-MHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQ-TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN 398 (626)
Q Consensus 321 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 398 (626)
+.+ +.+. .+-.+.+|.++.++|.-.++++.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 322 2222 2346788888888888888888888888888875 33 56777777777888888888888888887431
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHH
Q 040279 399 VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSI 478 (626)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (626)
+-+...|..+.-.|.+.++++.|+-.|+...+.+ |.+......+...+.+.|+.|+|+++++++..... .|+..-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHH
Confidence 1122344456667888888888888888887765 55677777778888888888888888888877543 35555556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD 544 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 544 (626)
.+..+...+++++|+..++++.+. ++.+...+..++..|.+.|+.+.|+.-|.-|.+ +.|.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~----ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD----LDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc----CCCc
Confidence 667777788888888888888885 233445677777788888888888888888877 5564
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-11 Score=109.09 Aligned_cols=287 Identities=13% Similarity=0.071 Sum_probs=212.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC
Q 040279 129 VENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL 208 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (626)
..|+|.+|+++..+..+.+-. ....|..-..+.-..|+.+.+-.++.++.+.. ..++.....+........|+
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------GDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHhCCC
Confidence 478999999999988777533 33445555666678899999999999988763 24666677778888888999
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHH
Q 040279 209 VDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNL-------LTFNVMIDCLCKGGKINE 281 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 281 (626)
.+.|..-++++.+.+ +.++........+|.+.|+|.....++..+.+.+.-.+. .+|+.+++-....+..+.
T Consensus 169 ~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 169 YPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred chhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999888888765 446778888889999999999999999999888765443 356666666666666666
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
-...|+..... .+.++..-..++.-+.++|+.++|.++.++..+++..+. ... .-.+.+.++.+.-++..++..+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHH
Confidence 55666665443 344566666777788888888888888888888765544 111 2234456777777777777665
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 362 NGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEM 431 (626)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (626)
. .+.++..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++...
T Consensus 323 ~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 323 Q-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred h-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4 3445577788888888888888888888877764 67888888888888888888888888876653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-10 Score=104.33 Aligned_cols=445 Identities=12% Similarity=0.085 Sum_probs=267.5
Q ss_pred CHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 55 NLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
|+.+|+.+++.-...+..- +...| ++.++.+.|+|++|...|..+....-.|.....+.. ..+.-.|.
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLA--------cc~FyLg~ 106 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLA--------CCKFYLGQ 106 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHH--------HHHHHHHH
Confidence 8999999999876544331 23333 556778999999999999988865433333333322 24556688
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchH
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKA 212 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 212 (626)
+.+|..+-.+..+ ++-.-..+.....+.|+-++-..+.+.+... ..--.+|....-..-.+.+|
T Consensus 107 Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----------~EdqLSLAsvhYmR~HYQeA 170 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----------LEDQLSLASVHYMRMHYQEA 170 (557)
T ss_pred HHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----------HHHHHhHHHHHHHHHHHHHH
Confidence 8999887776532 3444556667777888888877777766432 23345556655556678999
Q ss_pred HHHHHHHhhCCCCCCcchHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040279 213 KELFLEMKGRGINPAVVVCTT-LIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQ 291 (626)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 291 (626)
++++.+....+ |+-...|. +.-+|.+..-++-+.+++.-.++. ++.++.+.|..+....+.=+-..|++-...+-.
T Consensus 171 IdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad 247 (557)
T KOG3785|consen 171 IDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELAD 247 (557)
T ss_pred HHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh
Confidence 99999998763 44444444 445677888899999999888875 333444555544443333222233333344433
Q ss_pred cCCCCCHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040279 292 RGLNPDRFTYNSLMDGYCL-----VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQ 366 (626)
Q Consensus 292 ~~~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 366 (626)
.+-.. |- .+.-.++ ...-+.|++++-.+.+. -+..--.++--|.+.++..+|..+.+++.. .
T Consensus 248 N~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----t 314 (557)
T KOG3785|consen 248 NIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP----T 314 (557)
T ss_pred ccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC----C
Confidence 32110 11 1122222 23456777777666654 223334455567788888888888776532 1
Q ss_pred ChhhHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 040279 367 TVITYNTLLSGLFQAGQ-------AGYAQKLFDEMKLYNVEPDLS-TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI 438 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 438 (626)
++.-|..-...+...|+ ..-|...|.-.-..+..-|.. --.++..++.-..++++.+..++.+..--...|.
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~ 394 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD 394 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 22222222222333333 334444444443333222211 2233444555556788888888877755434444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFN-TLMHG 517 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~ 517 (626)
..+ .+.++++..|++.+|+++|-++....++.+..-...|.++|.+.|.++.|..++-.+.. +.+..++. .+...
T Consensus 395 Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 395 FNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIAND 470 (557)
T ss_pred hhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHH
Confidence 444 46788888899999999988887755553333344567788888888888776554432 22333333 34457
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHH
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVPDDTTFS 549 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~ 549 (626)
|.+.+.+=-|.+.|..+.. +.|+++.|.
T Consensus 471 CYk~~eFyyaaKAFd~lE~----lDP~pEnWe 498 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEI----LDPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHHhhhHHHc----cCCCccccC
Confidence 8888888778888887766 677766663
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-09 Score=106.72 Aligned_cols=405 Identities=13% Similarity=0.053 Sum_probs=270.5
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCC
Q 040279 147 GVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP 226 (626)
Q Consensus 147 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 226 (626)
.+.-|...|..|.-+....|+++.+.+.|++..... -.....|..+...|...|.-..|..++++-......|
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 345577888888888899999999999999987654 3456788889999999999999999998877653223
Q ss_pred C-cchHHHHHHHHH-hcCCHHHHHHHHHHHHHC--C--CCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 040279 227 A-VVVCTTLIHGFC-CAGNWEEVNGLFIEMLDL--G--PRPNLLTFNVMIDCLCKG-----------GKINEANGLLELM 289 (626)
Q Consensus 227 ~-~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~ 289 (626)
+ +..+-..-..|. ..+..+++++.-.+.... + .......|..+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 3 333333333443 446777777777666651 1 112233444444444322 1245677788888
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 040279 290 IQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVI 369 (626)
Q Consensus 290 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 369 (626)
.+.+.. |+.+.-.+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...+. ...|..
T Consensus 471 v~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~ 548 (799)
T KOG4162|consen 471 VQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHV 548 (799)
T ss_pred HhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhh
Confidence 776532 333333445557788999999999999998866778899999999999999999999999888765 111222
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhC---------------------CC-------CCCHHHHHHHHHHHHhc---CC
Q 040279 370 TYNTLLSGLFQAGQAGYAQKLFDEMKLY---------------------NV-------EPDLSTYNILIDGLCKN---NC 418 (626)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~l~~~~~~~---g~ 418 (626)
....-+..-..-++.+++......+... |. .....++..+..-.... -.
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 1111222223345555555444333210 00 00111121111111100 00
Q ss_pred HHHHHHHHHHHHHCCCC--cC------HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHH
Q 040279 419 VQEAVKLFHMLEMNKFE--FG------IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLE 490 (626)
Q Consensus 419 ~~~A~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 490 (626)
.+.. +...... |+ ...|......+.+.++.++|...+.+.... .+-....|......+...|..+
T Consensus 629 se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 629 SELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred cccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhH
Confidence 0000 1111111 12 234566677788899999999888888764 2335667777788889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHH
Q 040279 491 KANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVE--LLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAV 567 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 567 (626)
+|.+.|......+ +.+......+...+.+.|+..-|.. ++..+++ +.| +++.|..++..+.+.|+.++|.+.
T Consensus 702 EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr----~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 702 EAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR----LDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 9999999998853 3345688999999999999888887 9999999 888 689999999999999999999999
Q ss_pred HHHHH
Q 040279 568 SKSSY 572 (626)
Q Consensus 568 ~~~~~ 572 (626)
|..+.
T Consensus 777 f~aa~ 781 (799)
T KOG4162|consen 777 FQAAL 781 (799)
T ss_pred HHHHH
Confidence 99985
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-09 Score=96.85 Aligned_cols=312 Identities=14% Similarity=0.082 Sum_probs=222.9
Q ss_pred CCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHhc-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH
Q 040279 260 RPNLLTFNVMIDCLC--KGGKINEANGLLELMIQR-GLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSY 336 (626)
Q Consensus 260 ~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 336 (626)
.|...+....+.+++ ..++...+...+-.+... -++-|......+.+++...|+.+.|+..|++....++. +....
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhH
Confidence 333333333444433 344444444444433333 25567778888999999999999999999998876311 23333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040279 337 NILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN 416 (626)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (626)
....-.+.+.|+.++...+...+.... ......|-.-........++..|+.+-++.++.+ +-+...|..-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 344455667889988888888876541 1223334444445566788999999999888754 33455666666778889
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHH-HHH-HhcCCHHHHHH
Q 040279 417 NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMI-HGL-CRKGKLEKAND 494 (626)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~ 494 (626)
|++++|.-.|+..+... |.+...|..|+.+|...|.+.+|.-.-+...+. ++.+..+...+. ..+ .....-++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999888765 678899999999999999999998877766553 234555555542 222 23344688999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 495 FLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 495 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+++...+. .|+. ...+.+...|...|.+++++.++++.+. ..||......+++.+...+.+++|.+.|..++
T Consensus 426 f~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL- 498 (564)
T KOG1174|consen 426 FAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL- 498 (564)
T ss_pred HHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH-
Confidence 99988874 6664 4667777889999999999999999988 88999999999999999999999999999997
Q ss_pred hccccccccCCchhhh
Q 040279 574 ACLYVTIFQPSSLGSM 589 (626)
Q Consensus 574 ~~~~~~~~~p~~~~~l 589 (626)
..+|..=.++
T Consensus 499 ------r~dP~~~~sl 508 (564)
T KOG1174|consen 499 ------RQDPKSKRTL 508 (564)
T ss_pred ------hcCccchHHH
Confidence 4566664444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-09 Score=102.20 Aligned_cols=454 Identities=13% Similarity=0.069 Sum_probs=232.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 040279 87 KNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTG 166 (626)
Q Consensus 87 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 166 (626)
..++|...+.+.+.+++. .|....--++. +-.+...|+-++|....+..++.+ ..+.+.|..++-.+-...
T Consensus 19 E~kQYkkgLK~~~~iL~k--~~eHgeslAmk------GL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK--FPEHGESLAMK------GLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHhHHHHHHHHHHh--CCccchhHHhc------cchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhh
Confidence 445666666666666653 33322222222 123445566666666666665543 225566666666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHH
Q 040279 167 NLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEE 246 (626)
Q Consensus 167 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 246 (626)
++++|++.|+.+...+ +.|...+.-+.-.-++.++++.....-..+.+.. +.....|..+..++.-.|++..
T Consensus 90 ~Y~eaiKcy~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 6777777777766665 5566666666555566666666666665555541 2234456666666666677777
Q ss_pred HHHHHHHHHHCCC-CCChhhHHHH------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhH-HHHHHHHHhcCChHHHH
Q 040279 247 VNGLFIEMLDLGP-RPNLLTFNVM------IDCLCKGGKINEANGLLELMIQRGLNPDRFTY-NSLMDGYCLVGRIDTAR 318 (626)
Q Consensus 247 a~~~~~~~~~~~~-~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~ 318 (626)
|..++++..+... .|+...+.-. .....+.|.+++|.+.+..-... ..|...+ ..-...+.+.++.++|.
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 7777666655431 2343333221 12334556666666655544332 1122222 22334556667777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHH-hcCChHHHH-HHHHHHHHCCCCCChhhHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 040279 319 EIFLSMHSKGCKHTVVSYNILINGYC-KILNVEEAM-SLYRQIISNGVRQTVITYNTL-LSGLFQAGQAGYAQKLFDEMK 395 (626)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~ 395 (626)
.++..+... .||...|......+. +..+.-++. .+|....+.- |....-..+ +.......-.+..-+++....
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 777777666 345544444333322 233333333 4444444331 111111111 111111122233344445555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCC----------CCcCHHH--HHHHHHHHHHcCCHHHHHH
Q 040279 396 LYNVEPDLSTYNILIDGLCKNNCVQEAVKLF----HMLEMNK----------FEFGIEI--FNCLIDGLCKAGRLDNAWE 459 (626)
Q Consensus 396 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~----------~~~~~~~--~~~l~~~~~~~g~~~~A~~ 459 (626)
+.|+++--.. +...|-.....+--.++. ..+...+ -+|.... +-.+...+-+.|+++.|..
T Consensus 316 ~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 5554432222 222221111111001111 1111000 1333333 3345666777788888888
Q ss_pred HHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 040279 460 LFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPE 538 (626)
Q Consensus 460 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 538 (626)
+++...+. .|+ ++.|..=.+.+...|++++|..++++..+.+ .+|...=..-+.-..+++..++|.++.....+
T Consensus 393 yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr-- 467 (700)
T KOG1156|consen 393 YIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTR-- 467 (700)
T ss_pred HHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhh--
Confidence 88887764 455 4455555677777888888888888887764 34443333455556677788888888777776
Q ss_pred CCCCC--C---H-HHHHHH--HHHHHccCCHhHHHHHHHHH
Q 040279 539 RNLVP--D---D-TTFSIV--VDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 539 ~~~~p--~---~-~~~~~l--~~~~~~~g~~~~A~~~~~~~ 571 (626)
.|... + . -.|..+ +.+|.+.|++.+|.+=+..+
T Consensus 468 ~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 468 EGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred cccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 33211 1 1 113222 44577777777777766665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-08 Score=99.22 Aligned_cols=450 Identities=14% Similarity=0.099 Sum_probs=295.9
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHhhhhhhhhhhhcCCH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDF-LTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
++...+++.+.+++..|. ...+....+-.+...|+-++|....+..+.. .+.+ +.|.. ++ -.+....++
T Consensus 22 QYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv-~g------l~~R~dK~Y 91 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHV-LG------LLQRSDKKY 91 (700)
T ss_pred HHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHH-HH------HHHhhhhhH
Confidence 788889999988885444 5667766777778889999999998887764 3333 33443 22 234566789
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHH
Q 040279 134 KEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAK 213 (626)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 213 (626)
++|++.|...+..+ +.|...|.-+.-.-.+.++++.......+..+.. +.....|..++.++.-.|+...|.
T Consensus 92 ~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 92 DEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886 5577888888778888899998888888887765 556777888888888999999999
Q ss_pred HHHHHHhhCC-CCCCcchHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 040279 214 ELFLEMKGRG-INPAVVVCTTLI------HGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLL 286 (626)
Q Consensus 214 ~~~~~~~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 286 (626)
.++++..+.. ..|+...+.... ....+.|..++|++.+...... +.-....-..-...+.+.++.++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999988764 245555554332 3345778888888877665443 2212223344567788999999999999
Q ss_pred HHHHhcCCCCCHhhHHHHHH-HHHhcCChHHHH-HHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCC
Q 040279 287 ELMIQRGLNPDRFTYNSLMD-GYCLVGRIDTAR-EIFLSMHSKGCKHTVVSYNILINGYCKILN-VEEAMSLYRQIISNG 363 (626)
Q Consensus 287 ~~~~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~ 363 (626)
..++.. .||..-|...+. ++.+-.+.-++. .+|....+. .|....-..+--......+ .+..-.++....+.|
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 999987 567766665554 443333444444 566655554 1122111111111122222 334445666677777
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 040279 364 VRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKL----YN----------VEPDLS--TYNILIDGLCKNNCVQEAVKLFH 427 (626)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~ 427 (626)
+++ ++..+...|-.....+-..++.-.+.. .| -+|... ++..+++.+-+.|+++.|...++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 334444444332222211122111111 10 144444 44567788889999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 428 MLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN 507 (626)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 507 (626)
....+. |.-++.|..=.+.+...|++++|..++++..+.+ .+|...-..-+.-..+..+.++|.++.....+.|. +
T Consensus 396 ~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~ 471 (700)
T KOG1156|consen 396 LAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--G 471 (700)
T ss_pred HHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--c
Confidence 988764 3345667666788999999999999999998863 35655554666777888999999999999988763 2
Q ss_pred H--------HHHHHH--HHHHHhcCCHHHHHHHHHHh
Q 040279 508 V--------VTFNTL--MHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 508 ~--------~~~~~l--~~~~~~~g~~~~a~~~~~~~ 534 (626)
. -.|-.+ +.+|.+.|++..|++-|...
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 2 123222 45677888877776544443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-11 Score=109.08 Aligned_cols=223 Identities=10% Similarity=0.007 Sum_probs=101.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcC
Q 040279 339 LINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTY-NILIDGLCKNN 417 (626)
Q Consensus 339 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g 417 (626)
+..+|.+.|.+.+|.+.++..++. .|-+.||..|...|.+..++..|+.++.+-.+. .|..+|| ..+...+...+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 344444444444444444444433 233334444444444444444444444444432 2222222 22333344444
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLL 497 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (626)
+.++|.++++...+.. +.+.+...++...|.-.++++-|+.+++++++.|+. ++..|+.+.-+|...++++-++.-|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 4555555554444333 334444444444444445555555555555554443 44445555555555555555555555
Q ss_pred HHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 498 YMEKNGCAPNV--VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 498 ~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
+....--.|+. ..|-.+.......||+.-|.+.|+-++. -.|+ .+.++.|+-.-.+.|+.++|..+++.+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~----~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT----SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc----cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 54443222222 2444444444455555555555555444 2332 344555554445555555555555544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-11 Score=123.70 Aligned_cols=273 Identities=11% Similarity=-0.018 Sum_probs=192.4
Q ss_pred CCCCHhhHHHHHHHHH-----hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhh-hhhh--hhhhcCCHHHHHHHHHH
Q 040279 71 PSPPISSFNLLFGAVA-----KNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFG-NKER--GLCVENRIKEATWLFKN 142 (626)
Q Consensus 71 ~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~-~l~~--~~~~~~~~~~A~~~~~~ 142 (626)
+..+...|...+.+.. ..+++++|+.+|++.++. .|+.......++.+. .+.. .....+++++|...+++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 4456676666666542 235689999999999876 676654443333221 1111 12355678999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC
Q 040279 143 MIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR 222 (626)
Q Consensus 143 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (626)
.++.+ +.+..++..+..++...|++++|...|+++++.+ |.+...+..+...+...|++++|...+++..+.
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99875 4477888888899999999999999999999887 667788888999999999999999999999887
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-hh
Q 040279 223 GINPA-VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDR-FT 300 (626)
Q Consensus 223 ~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 300 (626)
. |+ ...+..++..+...|++++|...+++......+-+...+..+..++...|++++|...++++... .|+. ..
T Consensus 402 ~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~ 477 (553)
T PRK12370 402 D--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIA 477 (553)
T ss_pred C--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHH
Confidence 4 33 23344455557778999999999999887643334556777888888999999999999887665 3343 33
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 301 YNSLMDGYCLVGRIDTAREIFLSMHSKG-CKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 301 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
.+.+...|...| +.|...++.+.+.. ..+....+ +-..+.-.|+-+.+... +++.+.
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 444555666666 47777777765531 11222222 44445556777777666 777765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-11 Score=109.18 Aligned_cols=234 Identities=13% Similarity=0.059 Sum_probs=202.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 040279 302 NSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQA 381 (626)
Q Consensus 302 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (626)
+.+.++|.+.|.+.+|.+.|+...+. .|-+.+|-.+...|.+..+...|+.++.+-.+. .+-++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 57889999999999999999998887 567889999999999999999999999998886 344554455667888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040279 382 GQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELF 461 (626)
Q Consensus 382 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 461 (626)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+..++++...| ..+++.|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998764 5567777778888889999999999999999998 458899999999999999999999999
Q ss_pred HhcccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 040279 462 HKLPQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER 539 (626)
Q Consensus 462 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (626)
++....--.|+ ...|..+.......|++..|.+.|+-...++ ..+...++.|.-.-.+.|+.++|..++..+.+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--- 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--- 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh---
Confidence 99877433344 5679999999999999999999999999875 55678999999989999999999999999987
Q ss_pred CCCCCH
Q 040279 540 NLVPDD 545 (626)
Q Consensus 540 ~~~p~~ 545 (626)
+.|+.
T Consensus 458 -~~P~m 462 (478)
T KOG1129|consen 458 -VMPDM 462 (478)
T ss_pred -hCccc
Confidence 77763
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-10 Score=113.18 Aligned_cols=259 Identities=14% Similarity=0.130 Sum_probs=164.3
Q ss_pred HHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHH
Q 040279 61 YFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLF 140 (626)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~ 140 (626)
.++..+...|..|+.++|..+|.-|+..|+.+.|- +|..|.......+...++.++. +....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~-------sh~~And~Enpk--- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVA-------SHKEANDAENPK--- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHh-------cccccccccCCC---
Confidence 34556666788899999999999999999999998 8888887666677778887763 445566666555
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCCCccccccHHH-------------HHHHHHHHH
Q 040279 141 KNMIAFGVRPDVITYGTLINGFCRTGNLSV---ALRLHKKMVSGDYENGLISKTNIFS-------------YSIIIDSLC 204 (626)
Q Consensus 141 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~ 204 (626)
.|...+|..|..+|...||+.. ..+.++.+...-...|.+ .+.... -...+....
T Consensus 80 --------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv 150 (1088)
T KOG4318|consen 80 --------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLV 150 (1088)
T ss_pred --------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHH
Confidence 5788899999999999999765 222122221111001110 011111 112233333
Q ss_pred hcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040279 205 KEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAG-NWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 283 (626)
-.|-++.+++++..++..... . ....+++-+.... .+++-....+...+ .|+..+|..++..-...|+.+.|.
T Consensus 151 ~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHH
Confidence 344455555555444332100 0 1111233222222 22333222222222 478888888888888888999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 040279 284 GLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILN 348 (626)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (626)
.++..|.+.|++.+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999888888888777666654 77788888888888888888888888877766666444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-09 Score=104.61 Aligned_cols=438 Identities=12% Similarity=0.033 Sum_probs=275.7
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCC
Q 040279 71 PSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRP 150 (626)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (626)
.+-+...|..+.-++.+.|+++.+.+.|++....-+ -....|..+ ...|...|.-..|..+++........|
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~-------als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQL-------ALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHH-------HHHHHHhccchHHHHHHHhhcccccCC
Confidence 445788999999999999999999999999874322 222333332 234566777888999998877654334
Q ss_pred C-HhHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc-----------CCcchHHHHHH
Q 040279 151 D-VITYGTLINGFC-RTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE-----------GLVDKAKELFL 217 (626)
Q Consensus 151 ~-~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~ 217 (626)
+ ...+-..-..|. +.+..++++.+..+++....... .......|..+.-+|... ....++++.++
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 3 333333333443 46778888888888776221000 122344455555555432 12457788888
Q ss_pred HHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040279 218 EMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD 297 (626)
Q Consensus 218 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 297 (626)
+..+.+. -|+.+...+.--|+..++.+.|.+..++.++.+..-+...|..+.-.+...+++.+|+.+.+.....- ..|
T Consensus 469 ~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N 546 (799)
T KOG4162|consen 469 EAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDN 546 (799)
T ss_pred HHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhh
Confidence 8877642 24444444455577889999999999999988767788899999999999999999999998877651 111
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhhHHHHH
Q 040279 298 RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN--GVRQTVITYNTLL 375 (626)
Q Consensus 298 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~ 375 (626)
......-+..-...++.++++.....+...- -+.... .+.++-...++....+.-. .....+.++..+.
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALW--EAEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHH--HhhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 1111122233334677777777666655420 000000 1111111122222111100 0111122232222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 040279 376 SGLFQAGQAGYAQKLFDEMKLYNVE--PD------LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDG 447 (626)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (626)
......+........ +.+..+. |+ ...+......+.+.++.++|...+.+..... +.....|......
T Consensus 618 ~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 618 SLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred HHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 221111110000000 1111111 22 1234455566778889999988887777554 5567778888888
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040279 448 LCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKAND--FLLYMEKNGCAPNVVTFNTLMHGFLQNNKT 524 (626)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (626)
+...|+..+|.+.|...... .|+ +.+..++..++.+.|+..-|.. ++..+.+.+ +.+...|-.++..+.+.|+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccch
Confidence 88999999999999998875 344 6788899999999998888887 999999976 66889999999999999999
Q ss_pred HHHHHHHHHhhc
Q 040279 525 SKVVELLHKMAE 536 (626)
Q Consensus 525 ~~a~~~~~~~~~ 536 (626)
++|.+.|..+.+
T Consensus 771 ~~Aaecf~aa~q 782 (799)
T KOG4162|consen 771 KQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHh
Confidence 999999999887
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-10 Score=119.55 Aligned_cols=218 Identities=15% Similarity=0.112 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 131 NRIKEATWLFKNMIAFGVRPDVITYGTLINGFCR---------TGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
+++++|+..|++.++.. +.+...|..+..++.. .+++++|...++++++.+ |.+...+..+..
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~ 346 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHH
Confidence 34667778888777663 2234455555444432 234677777777777765 566667777777
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINE 281 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 281 (626)
.+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHH
Confidence 7777777777777777777663 334556666777777777777777777777775443 22223333444555677777
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
|...++++.+...+-+...+..+..++...|++++|...++++.... +.+....+.+...|...| +.|...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 77777776654322234445556666667777777777776665442 112233444444555555 355555555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-08 Score=100.70 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=37.2
Q ss_pred HHhcC-CHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 518 FLQNN-KTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 518 ~~~~g-~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
+.+.. -.++|.++++-+.+ ..| +..+|..-..+|.+.|++--|.+.+.+
T Consensus 466 L~~t~dPLe~A~kfl~pL~~----~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLE----LAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHH----hCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 33444 44889999999887 555 467888888899999999888877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-10 Score=103.64 Aligned_cols=198 Identities=12% Similarity=0.079 Sum_probs=134.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 040279 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGL 448 (626)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (626)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 445555666666666666666666665542 3334556666666777777777777777666554 34455666667777
Q ss_pred HHcCCHHHHHHHHHhcccCCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040279 449 CKAGRLDNAWELFHKLPQKGL-VPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKV 527 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 527 (626)
...|++++|.+.++++.+... ......+..+..++...|++++|.+.+.+..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777765321 1234456667777888888888888888887753 33456777777888888888888
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 528 VELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 528 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
...++++.+ . .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQ--T-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHH--h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888877 2 12345666677777788888888888877764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-07 Score=90.93 Aligned_cols=457 Identities=13% Similarity=0.076 Sum_probs=268.4
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINC 119 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 119 (626)
.+..-+......| ++++|.+.-+.++..+|. +..++..-+.++.+.++|++|+.+.+.-... ..-+...+. .+
T Consensus 14 ~l~t~ln~~~~~~--e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~-~~~~~~~fE---KA 86 (652)
T KOG2376|consen 14 ALLTDLNRHGKNG--EYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL-LVINSFFFE---KA 86 (652)
T ss_pred HHHHHHHHhccch--HHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-hhcchhhHH---HH
Confidence 3444455555555 899999999999998765 6777777778899999999999666543211 011112122 22
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHH
Q 040279 120 FGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSII 199 (626)
Q Consensus 120 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (626)
| +..+.+..++|+..++-.. +.+..+...-...+.+.|++++|+.+|+.+.+.+.. ..+...-..+
T Consensus 87 Y-----c~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-----d~d~~~r~nl 152 (652)
T KOG2376|consen 87 Y-----CEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-----DQDEERRANL 152 (652)
T ss_pred H-----HHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-----hHHHHHHHHH
Confidence 3 4568899999999998332 224557777788899999999999999999877621 1222222222
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHH---HHHHHhcCCHHHHHHHHHHHHHCC-------CCCC------h
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTL---IHGFCCAGNWEEVNGLFIEMLDLG-------PRPN------L 263 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~~~-------~~~~------~ 263 (626)
+..-.. ..+. +.+.... .| ..+|..+ ...+...|++.+|+++++...+.+ -.-+ .
T Consensus 153 ~a~~a~----l~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 153 LAVAAA----LQVQ-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred HHHHHh----hhHH-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 222111 1111 2222222 22 3344433 345668899999999999883221 1100 1
Q ss_pred h-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHH---HHHhcCC-hH-HHHHHHHHHHhcCC--------
Q 040279 264 L-TFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMD---GYCLVGR-ID-TAREIFLSMHSKGC-------- 329 (626)
Q Consensus 264 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~g~-~~-~a~~~~~~~~~~~~-------- 329 (626)
. .-..+.-++...|+.++|..++...++.+. +|........+ +.....+ ++ .++..++.......
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls 302 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS 302 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 1 122345567789999999999999998853 34432222211 1111111 11 12222222221100
Q ss_pred --CCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCHH
Q 040279 330 --KHTVVSY-NILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLF--QAGQAGYAQKLFDEMKLYNVEPDLS 404 (626)
Q Consensus 330 --~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~ 404 (626)
.-..... +.++..| .+..+.+.++...... ..|. ..+..++.... +...+..+..++...-+........
T Consensus 303 ~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~ 377 (652)
T KOG2376|consen 303 KKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKV 377 (652)
T ss_pred HHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHH
Confidence 0011111 1222222 2333344333332221 1223 33334443322 2234677777777776543222345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC--CCCCC--
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFH--------MLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK--GLVPT-- 472 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~-- 472 (626)
+...+++.....|+++.|..++. .+.+.+ ..+.+...++..+.+.++-+.|..++.+.... ...+.
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 66677788889999999999998 555443 34556677778888888877777777665441 11112
Q ss_pred --HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 473 --VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 473 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..++..++..-.+.|+.++|..+++++.+.+ ++|..+...++.+|++. +++.|..+-+.+..
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 2234444455567899999999999999975 77888999999999776 67888887777643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.7e-10 Score=101.78 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=126.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG 412 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (626)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666665542 2234555556666666666666666666666543 3344455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 413 LCKNNCVQEAVKLFHMLEMNKF-EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
+...|++++|...++....... +.....+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6667777777777766654321 2234455566677777777777777777776642 2245567777777777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888777765 244555666666777777788887777776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-08 Score=99.14 Aligned_cols=293 Identities=15% Similarity=0.111 Sum_probs=158.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHH-HHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCT-TLIH 236 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~ 236 (626)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+.+++ |+...|. .+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~ 80 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 344555666777777766654433 23445555566666666677777777777766663 3433333 3333
Q ss_pred HHHh-----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040279 237 GFCC-----AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKIN-EANGLLELMIQRGLNPDRFTYNSLMDGYCL 310 (626)
Q Consensus 237 ~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 310 (626)
+... ..+.+...++++++...- |.......+.-.+.....+. .+...+..+...|++ .+|+.+-..|..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 3311 124555666666665432 22222211111111112222 234455555566644 234444444444
Q ss_pred cCChHHHHHHHHHHHhc----C----------CCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 040279 311 VGRIDTAREIFLSMHSK----G----------CKHTVVSY--NILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTL 374 (626)
Q Consensus 311 ~g~~~~a~~~~~~~~~~----~----------~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 374 (626)
..+.+-..+++...... + -+|+...| ..+...|...|++++|++++++.++.. +..+..|..-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~K 234 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTK 234 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 33444444444443321 0 12333223 444566667777778887777777762 2235666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--------HHHHHHHH
Q 040279 375 LSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI--------EIFNCLID 446 (626)
Q Consensus 375 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~l~~ 446 (626)
...+-+.|++.+|.+.++.....+ ..|...-+-.+..+.+.|+.++|.+++....+.+..|.. ........
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 777777788888877777777654 345555555666677777888887777776655432221 11234556
Q ss_pred HHHHcCCHHHHHHHHHhccc
Q 040279 447 GLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~ 466 (626)
+|.+.|++..|++.|..+.+
T Consensus 314 a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 67777887777766665544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-07 Score=89.64 Aligned_cols=447 Identities=15% Similarity=0.118 Sum_probs=259.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 040279 80 LLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLI 159 (626)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 159 (626)
+=++.+..+|++++|.....+++..+..+....+..+ .++.+.+.|++|+.+.+.-... ..+..-+ +=
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKv--------ValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fE 84 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKV--------VALIQLDKYEDALKLIKKNGAL--LVINSFF--FE 84 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhH--------hhhhhhhHHHHHHHHHHhcchh--hhcchhh--HH
Confidence 3445667889999999999999977533333333334 3567889999999665543321 1111111 23
Q ss_pred HHH--HhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCC-CcchHHHHHH
Q 040279 160 NGF--CRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP-AVVVCTTLIH 236 (626)
Q Consensus 160 ~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~ 236 (626)
.+| .+.+..++|+..++-.. +.+..+...-...+-+.|++++|+++|+.+.+.+.+- +...-..++.
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLD----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred HHHHHHHcccHHHHHHHHhccc----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 444 47899999999998331 3445577777888899999999999999998764321 1111112221
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHHhcC--------CC-----CCHh-
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVM---IDCLCKGGKINEANGLLELMIQRG--------LN-----PDRF- 299 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~--------~~-----~~~~- 299 (626)
+-. +... +.+......| ..+|..+ ...+...|++.+|+++++...+.+ .. .+..
T Consensus 155 ~~a-------~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 155 VAA-------ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHH-------hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 111 1111 0111211222 3344443 345667899999999999883321 00 0011
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH----HHHHHHHHhcCCh-H-HHHHHHHHHHHCC----------
Q 040279 300 TYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSY----NILINGYCKILNV-E-EAMSLYRQIISNG---------- 363 (626)
Q Consensus 300 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~-~-~A~~~~~~~~~~~---------- 363 (626)
.-..+.-.+...|+.++|..++..+...... |.... |.++ ++....++ + .++..++......
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~ 303 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK 303 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1123444566789999999999999988543 33222 2222 22221111 1 2222222221110
Q ss_pred -CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCcCHHH
Q 040279 364 -VRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLC--KNNCVQEAVKLFHMLEMNKFEFGIEI 440 (626)
Q Consensus 364 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~ 440 (626)
-......-+.++..| .+..+.+.++...... ..|... +..++..+. +.....++..++....+........+
T Consensus 304 ~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v 378 (652)
T KOG2376|consen 304 KQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVV 378 (652)
T ss_pred HHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHH
Confidence 000111112223333 2344444444433322 233333 333443332 22356777777777766543334566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--------hcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH--
Q 040279 441 FNCLIDGLCKAGRLDNAWELFH--------KLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN--GCAPNV-- 508 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~-- 508 (626)
....++.....|+++.|++++. .+.+.+.. +.+..++...+.+.++.+.|..++.+.+.. .-.+..
T Consensus 379 ~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~ 456 (652)
T KOG2376|consen 379 LLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA 456 (652)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH
Confidence 7777888899999999999999 55554433 445556677788888877788887777642 111222
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 509 --VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 509 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.++..+...-.+.|+.++|...++++++ ..| |..+...++.+|.+.. .+.|+.+-+..
T Consensus 457 l~~~~~~aa~f~lr~G~~~ea~s~leel~k----~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 457 LLSLMREAAEFKLRHGNEEEASSLLEELVK----FNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HHhHHHHHhHHHHhcCchHHHHHHHHHHHH----hCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 2344444455678999999999999998 555 6788888888888764 67888776665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.7e-09 Score=98.16 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=88.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
+..+..|+++.|+.+|.+.+... +++...|+.-..+|...|++++|++=-.+-++.. |.-...|+....++.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------PDWAKGYSRKGAALF 81 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------CchhhHHHHhHHHHH
Confidence 45678899999999999999886 5588889999999999999999999888887765 566778999999999
Q ss_pred hcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 040279 205 KEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGF 238 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (626)
-.|++++|+..|.+-.+.. +.+...++-+..++
T Consensus 82 ~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999999999999988763 33455666666665
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-09 Score=104.47 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 040279 191 TNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMI 270 (626)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 270 (626)
++..+|..++..-...|+.+.|..++.+|+++|++.+..-|-.|+-+ .++..-+..+++-|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 56677777777777777777777777777777777666655555544 666666677777777777777777777766
Q ss_pred HHHHhcCC
Q 040279 271 DCLCKGGK 278 (626)
Q Consensus 271 ~~~~~~~~ 278 (626)
..+.++|.
T Consensus 279 ip~l~N~~ 286 (1088)
T KOG4318|consen 279 IPQLSNGQ 286 (1088)
T ss_pred Hhhhcchh
Confidence 66666444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-07 Score=85.48 Aligned_cols=203 Identities=15% Similarity=0.043 Sum_probs=110.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 345 KILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
...+++.|+.+-++.++... .+...+-.-...+...++.++|.-.|+...... +-+...|..++.+|...|.+.+|..
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHH
Confidence 34455555555555554321 122333333344555566666666665555431 2344566666666666666666655
Q ss_pred HHHHHHHCCCCcCHHHHHHHH-HHHH-HcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 425 LFHMLEMNKFEFGIEIFNCLI-DGLC-KAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
.-+...+. ++.+..+...+. ..+. ...--++|.+++++.... .|+ ....+.+...+...|..+.++.++++...
T Consensus 390 ~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 390 LANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 55433322 123333333331 1221 122235677777766653 455 34556666667777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHcc
Q 040279 502 NGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKD 558 (626)
Q Consensus 502 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 558 (626)
. .||....+.|...+...+.+++|.+.|..+++ +.|+...-..-.+.+.+.
T Consensus 467 ~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr----~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 467 I--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR----QDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred h--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCccchHHHHHHHHHHhc
Confidence 3 56777777777777777777777777777776 667443333333444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-09 Score=105.71 Aligned_cols=240 Identities=16% Similarity=0.103 Sum_probs=156.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHh-----CC-CC
Q 040279 334 VSYNILINGYCKILNVEEAMSLYRQIISN-----G-VRQTVI-TYNTLLSGLFQAGQAGYAQKLFDEMKL-----YN-VE 400 (626)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~ 400 (626)
.+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++.. .| ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33444555666666666666666555443 1 012222 223456677777777777777777653 11 11
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C--C-CCcC-HHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CC
Q 040279 401 PD-LSTYNILIDGLCKNNCVQEAVKLFHMLEM---N--K-FEFG-IEIFNCLIDGLCKAGRLDNAWELFHKLPQK---GL 469 (626)
Q Consensus 401 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 469 (626)
|. ..+++.|...|.+.|++++|...++...+ . + ..+. ...++.+...+...+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 21 23566666677788888777777765432 1 1 1111 224556667788888888888888766541 11
Q ss_pred CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-
Q 040279 470 VPT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKN----GC--AP-NVVTFNTLMHGFLQNNKTSKVVELLHKMAEP- 537 (626)
Q Consensus 470 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 537 (626)
.++ ..+++.|...|.+.|++++|.++++++++. +. .+ ....++.+...|.+.+++++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 122 457899999999999999999999998753 11 11 2356788889999999999998888876431
Q ss_pred -CCCC-CCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 538 -ERNL-VPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 538 -~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.+|. .|+ ..+|..|+..|.+.|++++|.++.+.+.+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1221 233 46799999999999999999999999864
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-07 Score=94.88 Aligned_cols=505 Identities=11% Similarity=-0.000 Sum_probs=266.6
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHH
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPD-FLTLNILIN 118 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~ 118 (626)
.+..+-.-|+... |...|.+.|+.+-+.++. +..++......|++..+|+.|..+.-...+. .|- ...++..-
T Consensus 494 af~~LG~iYrd~~--Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~- 567 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSD--DMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQ- 567 (1238)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhh-
Confidence 3444444455544 677888888888777665 7778888888888888888888774433322 111 11222221
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHH
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSI 198 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (626)
++-.|...++...|+..|+...+.. +-|...|..++.+|...|++..|+++|.++...+ |.+...-.-
T Consensus 568 ----rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-------P~s~y~~fk 635 (1238)
T KOG1127|consen 568 ----RGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-------PLSKYGRFK 635 (1238)
T ss_pred ----ccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------cHhHHHHHH
Confidence 3456777888888888888888765 4477788888888888888888888888887654 333333333
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhCC------CCCCcchHHHHHHHHHhcCCHHHHHHHHHH-------HHHCCCCCChhh
Q 040279 199 IIDSLCKEGLVDKAKELFLEMKGRG------INPAVVVCTTLIHGFCCAGNWEEVNGLFIE-------MLDLGPRPNLLT 265 (626)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~ 265 (626)
.....+..|.+.+|+..+..+...- ..--..++..+...+...|-..++.+.+++ ........+...
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~ 715 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQ 715 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3445566788888888887765430 001112222222223333333333333333 222221112223
Q ss_pred HHHHHHHHHhcCCHH------HHHHHHH-HHHhcCCC--------------------CCHhhHHHHHHHHHh----cC--
Q 040279 266 FNVMIDCLCKGGKIN------EANGLLE-LMIQRGLN--------------------PDRFTYNSLMDGYCL----VG-- 312 (626)
Q Consensus 266 ~~~l~~~~~~~~~~~------~a~~~~~-~~~~~~~~--------------------~~~~~~~~ll~~~~~----~g-- 312 (626)
|..+..+|.-.-..+ ....++. +....+.- .+..+|..+...|.+ .+
T Consensus 716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 333222221110000 0001111 11111111 112233333332222 11
Q ss_pred --ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 040279 313 --RIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKL 390 (626)
Q Consensus 313 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 390 (626)
+...|+..+....+..- .+..+|+.+.-. ...|++.-|.-.|-+-... .+....+|..+...+.+..+++.|...
T Consensus 796 ~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~a 872 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPA 872 (1238)
T ss_pred chhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHH
Confidence 12345555555544321 144455554433 5556666666555554443 233556677777777777888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HH--HCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 391 FDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHM--LE--MNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
|...+... +.+...+..........|+.-++..+|.. .. ..|--++..-|-+........|+.++-+...+.+..
T Consensus 873 f~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 873 FSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred HHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 88877643 33444454444444456777777777754 11 122234444444444555666666655444444322
Q ss_pred C---------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHH
Q 040279 467 K---------GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN-GCAPNVVTFN----TLMHGFLQNNKTSKVVELLH 532 (626)
Q Consensus 467 ~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~ 532 (626)
. +.+.+...|...+...-+.+.+..|.+...+.... ...-+...++ .+.+.++..|.++.|...+.
T Consensus 952 As~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~ 1031 (1238)
T KOG1127|consen 952 ASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASW 1031 (1238)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhc
Confidence 1 33445667777777777778888887777665421 0122333333 34455566677765554433
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 533 KMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 533 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.... ..+..+.. .--.+.-.|+++++.+.|+++.
T Consensus 1032 ~~~~-----evdEdi~g-t~l~lFfkndf~~sl~~fe~aL 1065 (1238)
T KOG1127|consen 1032 KEWM-----EVDEDIRG-TDLTLFFKNDFFSSLEFFEQAL 1065 (1238)
T ss_pred ccch-----hHHHHHhh-hhHHHHHHhHHHHHHHHHHHHh
Confidence 3221 11111111 1111244678888888888875
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-08 Score=95.33 Aligned_cols=220 Identities=11% Similarity=0.033 Sum_probs=152.1
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 129 VENRIKEATWLFKNMIAFG-VRP--DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
..+..+.++.-+.+++... ..| ....|..+...+...|++++|...|++.++.+ |.+...|+.+...+..
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQ 110 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence 3456677888888887542 122 23557888888999999999999999999876 6778899999999999
Q ss_pred cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 040279 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGL 285 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 285 (626)
.|++++|.+.|+...+.. +-+..+|..+..++...|++++|.+.|+...+..+. ..........+...++.++|...
T Consensus 111 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999999998763 224667888888889999999999999999886433 22222223334456789999999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhc---CC---CCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 286 LELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSK---GC---KHTVVSYNILINGYCKILNVEEAMSLYRQI 359 (626)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 359 (626)
+++..... .++... .. ......|+...+ ..+..+.+. .+ +.....|..+...+.+.|++++|+..|++.
T Consensus 188 l~~~~~~~-~~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWG-WN--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccH-HH--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 97655432 233222 12 223345555443 344444321 10 112356777788888888888888888888
Q ss_pred HHCC
Q 040279 360 ISNG 363 (626)
Q Consensus 360 ~~~~ 363 (626)
.+.+
T Consensus 263 l~~~ 266 (296)
T PRK11189 263 LANN 266 (296)
T ss_pred HHhC
Confidence 8764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-09 Score=88.05 Aligned_cols=196 Identities=11% Similarity=0.029 Sum_probs=151.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 040279 371 YNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK 450 (626)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (626)
...+.-.|...|+...|.+-+++.++++ +.+..++..+...|.+.|+.+.|.+.|+...... +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4456667888888888888888888864 4455678888888888888888888888888765 5577788888888888
Q ss_pred cCCHHHHHHHHHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVE 529 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 529 (626)
.|++++|...|++....-.-+ -..+|..++.+..+.|+.+.|.+.|++..+.. +-...+...+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 888999988888887741111 25678888888888888999999888888864 4456677788888888888888888
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 530 LLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 530 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+++.... .+ .++..++...+.+-.+.|+.+.|.++=....
T Consensus 195 ~~~~~~~--~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQ--RG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHh--cc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8888876 33 3788888888888888888887777666553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.3e-09 Score=101.41 Aligned_cols=244 Identities=19% Similarity=0.192 Sum_probs=133.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHH-HHHHHHHHhcCCcchHHHHHHHHhhC-----C-
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSY-SIIIDSLCKEGLVDKAKELFLEMKGR-----G- 223 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-----~- 223 (626)
-..+...+...|...|+++.|..+++..++.-........+...+. +.+...|...+++++|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677999999999999999999998764000000012333333 33666777888888888888877542 1
Q ss_pred CCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 040279 224 INP-AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL-----GP-RPNLL-TFNVMIDCLCKGGKINEANGLLELMIQR--- 292 (626)
Q Consensus 224 ~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 292 (626)
..| -..+++.|...|.+.|++++|...+++..+. +. .|.+. .++.+...+...+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 111 1245666666777778777777766665431 11 11111 3445556666677777777766654432
Q ss_pred CCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 293 GLNP----DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKG-------CKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 293 ~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
-+.+ -..+++.|...|...|++++|.++++.+.... ..-....++.+...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 0111 12345556666666666666666666554431 011123344555555555555555555544322
Q ss_pred C----CC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 040279 362 N----GV--RQTVITYNTLLSGLFQAGQAGYAQKLFDEM 394 (626)
Q Consensus 362 ~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 394 (626)
- |+ +....+|..|...|...|++++|.++.+..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 11 111234445555555555555555554444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-08 Score=86.62 Aligned_cols=194 Identities=14% Similarity=0.048 Sum_probs=106.3
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
++-+|..+|++..|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++.++.. |.+..+.|.....
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNNYG~F 112 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhhhhHH
Confidence 3445666666666666666666553 2234455556666666666666666666666554 4455555556666
Q ss_pred HHhcCCcchHHHHHHHHhhCC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRG-INPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINE 281 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 281 (626)
+|..|++++|...|++....- ..-...+|..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 666666666666666655431 1112345555555555666666666666665554322 33344555555556666666
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHS 326 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 326 (626)
|...++.....+. ++..+.-..|..--..|+.+.+.++=.++..
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666655555543 4555555555555555555555554444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-07 Score=90.71 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRK 100 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (626)
|+++.|..+++.. +.+|. ....|-.+...-...|+.--|.+.|..
T Consensus 458 ~df~ra~afles~-~~~~d-a~amw~~laelale~~nl~iaercfaa 502 (1636)
T KOG3616|consen 458 GDFDRATAFLESL-EMGPD-AEAMWIRLAELALEAGNLFIAERCFAA 502 (1636)
T ss_pred CchHHHHHHHHhh-ccCcc-HHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 6999999998875 33332 234577777766677776666665543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.4e-08 Score=92.55 Aligned_cols=402 Identities=14% Similarity=0.080 Sum_probs=243.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCC-cchHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA-VVVCTTLIH 236 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~ 236 (626)
-..+.+..|+++.|+.+|-..+..+ |+|...|+.-..+|++.|++++|++=-.+-++. .|+ ...|.-...
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~-------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS-------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGA 78 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC-------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHH
Confidence 3456778999999999999999887 678889999999999999999998877766665 343 467888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH---HHHHHHHHhcC---CCCCHhhHHHHHHHHHh
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEA---NGLLELMIQRG---LNPDRFTYNSLMDGYCL 310 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~---~~~~~~~~~~ll~~~~~ 310 (626)
++.-.|++++|+.-|.+-++..+. +...++-+..++.......+. -.++..+.... .......|..++..+-+
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 999999999999999998886432 555666666655111000000 00111110000 00001112222211110
Q ss_pred c-------CChHHHHHHHHHHHh--------cC-------CCC----------------------ChhhHHHHHHHHHhc
Q 040279 311 V-------GRIDTAREIFLSMHS--------KG-------CKH----------------------TVVSYNILINGYCKI 346 (626)
Q Consensus 311 ~-------g~~~~a~~~~~~~~~--------~~-------~~~----------------------~~~~~~~l~~~~~~~ 346 (626)
. ...+...+..-.+.. .+ ..| -..-...+.++..+.
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 0 001111111100000 00 011 011234456666677
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHhcCCH
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNI-------LIDGLCKNNCV 419 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~ 419 (626)
.+++.|++.+....+.. .+..-++....+|...|.+..+...-+...+.|. -...-|+. +..+|.+.+++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 77888888888877763 3555566666777888887777776666655442 12222332 33345556677
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 420 QEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTV-VTYSIMIHGLCRKGKLEKANDFLLY 498 (626)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 498 (626)
+.++..|.+.......|+. ..+....+++.+..+...-. .|.. .-.-.-...+.+.|++..|+..|.+
T Consensus 315 ~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 7777777765543222221 22233344444444443332 2222 1112225667788999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhhccc
Q 040279 499 MEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYRACLY 577 (626)
Q Consensus 499 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 577 (626)
+++.+ +-|...|....-+|.+.|.+..|+.-.+..++ +.|+ ...|..-+.++....+|++|.+.|++.+
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie----L~p~~~kgy~RKg~al~~mk~ydkAleay~eal----- 453 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE----LDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL----- 453 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 88875 66778888888899999999999999888888 6775 4557777788888888999999888886
Q ss_pred cccccCCc--hhhhhhhhee
Q 040279 578 VTIFQPSS--LGSMIGCTVR 595 (626)
Q Consensus 578 ~~~~~p~~--~~~l~~~~~~ 595 (626)
..+|+. ....+..|..
T Consensus 454 --e~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 454 --ELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred --hcCchhHHHHHHHHHHHH
Confidence 446666 3333445444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-08 Score=85.19 Aligned_cols=94 Identities=11% Similarity=0.146 Sum_probs=55.6
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINC 119 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 119 (626)
-+...+..+.+.. ++.+|++++....+..|. +......|+.+|.+..++..|...|+++-.. .|...-|...-
T Consensus 12 eftaviy~lI~d~--ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~-- 84 (459)
T KOG4340|consen 12 EFTAVVYRLIRDA--RYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQ-- 84 (459)
T ss_pred chHHHHHHHHHHh--hHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHH--
Confidence 3555555556554 677777777666655443 5566666666666777777777777776654 44444443322
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHHHH
Q 040279 120 FGNKERGLCVENRIKEATWLFKNMI 144 (626)
Q Consensus 120 ~~~l~~~~~~~~~~~~A~~~~~~~~ 144 (626)
.+.+.+.+.+.+|+.+...|.
T Consensus 85 ----AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 85 ----AQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred ----HHHHHHhcccHHHHHHHHHhc
Confidence 244555666666666666554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-06 Score=89.54 Aligned_cols=542 Identities=11% Similarity=-0.034 Sum_probs=294.8
Q ss_pred CCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 53 IINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 53 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
.+++++|...|+..++..|. |...|..++.+|.++|.+..|+.+|.++... .|+..--..-. ....+..|.
T Consensus 575 a~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~------A~~ecd~Gk 645 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKE------AVMECDNGK 645 (1238)
T ss_pred ccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHH------HHHHHHhhh
Confidence 36899999999999998776 8999999999999999999999999998865 55443222222 135677899
Q ss_pred HHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH-------hCCCCCCccccccHHHHHHH
Q 040279 133 IKEATWLFKNMIAFG------VRPDVITYGTLINGFCRTGNLSVALRLHKKMV-------SGDYENGLISKTNIFSYSII 199 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l 199 (626)
+.+|+..+..+.... ...-..++......+.-.|-..+|...+++.+ ... ...+...|-.+
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~------~~~~~~~Wi~a 719 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS------LQSDRLQWIVA 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh------hhhhHHHHHHH
Confidence 999999998876531 11122334444444444444444444444332 222 01112222221
Q ss_pred HHHHHhcCC--cch----HHHHHHH-HhhCC--------------------CCCCcchHHHHHHHHHh----c----CCH
Q 040279 200 IDSLCKEGL--VDK----AKELFLE-MKGRG--------------------INPAVVVCTTLIHGFCC----A----GNW 244 (626)
Q Consensus 200 ~~~~~~~g~--~~~----A~~~~~~-~~~~~--------------------~~~~~~~~~~li~~~~~----~----~~~ 244 (626)
..++.-.-. ++. -..++.. ....+ ...+..+|..|+..|.+ . .+.
T Consensus 720 sdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 720 SDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 111110000 000 0001100 11111 11234566666655543 1 223
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 245 EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSM 324 (626)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 324 (626)
..|+..+...++.... +..+|+.+.-. ...|++.-+...|-+..... +....+|..+...+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 4677777777665322 55566665544 56677777777776655542 446667777778888889999999999988
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH--HH--CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----
Q 040279 325 HSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQI--IS--NGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKL---- 396 (626)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 396 (626)
....+ .+...|--........|+.-++..+|..- .. .|-.++..-|..........|+.++-+...+++..
T Consensus 877 qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 87642 25556655555556678888888887762 22 23333443343333444555655544333333211
Q ss_pred -----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHH----HHHHHHHHcCCHHHHHHHHHhccc
Q 040279 397 -----YNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMN-KFEFGIEIFN----CLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 397 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
.+.+.+...|.......-..+.+..|.....++... ....+...|+ .+.+.++..|.++.|..-+.....
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 123445566776666666666666666665543310 0012223333 344556667777777665554332
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC
Q 040279 467 KGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG-CAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD 544 (626)
Q Consensus 467 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 544 (626)
. .+..+...-+.. .-.++++++.+.|+++..-- -.-+ ......++.+....+..+.|...+-+... --+|+
T Consensus 1036 e---vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~---ls~~~ 1108 (1238)
T KOG1127|consen 1036 E---VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS---LSKVQ 1108 (1238)
T ss_pred h---HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH---hCccc
Confidence 1 122222111212 33578899999999887631 1122 23445555566677778888887777665 12345
Q ss_pred HHHHHHHHHHHHccCCH---hHHHHHHHHHHhhccccccccCCc-hhhhhhhheeccCCccchhccccCCCCCCchhHHH
Q 040279 545 DTTFSIVVDLLAKDEKY---HECSAVSKSSYRACLYVTIFQPSS-LGSMIGCTVRLMPQPEMSDTLGDDGDGNAGPIILS 620 (626)
Q Consensus 545 ~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 620 (626)
..+...+...+.-..+- .-+.+-+++..+.... -.+|.. -..++...+|..--.....|+.--+|.|+.-+-++
T Consensus 1109 ~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~--~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1109 ASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWF--CWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLL 1186 (1238)
T ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHh--ccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHH
Confidence 55555554443332222 2233333332211110 111111 22233333333333556677888888888887776
Q ss_pred HH
Q 040279 621 AV 622 (626)
Q Consensus 621 ~~ 622 (626)
.+
T Consensus 1187 ~v 1188 (1238)
T KOG1127|consen 1187 SV 1188 (1238)
T ss_pred HH
Confidence 54
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-08 Score=92.34 Aligned_cols=224 Identities=14% Similarity=0.056 Sum_probs=157.0
Q ss_pred HhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 040279 86 AKNRHYDAVISFYRKLVSIG-LLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCR 164 (626)
Q Consensus 86 ~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 164 (626)
...+..+.++.-+.+++... ..|+... .. +..++..+...|+.++|...|++.++.. +.+...|+.+...+..
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a-~~----~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERA-QL----HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQ 110 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhH-HH----HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34456677888888887542 1222211 11 1123457888999999999999999875 4468899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCH
Q 040279 165 TGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNW 244 (626)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 244 (626)
.|++++|...|++.++.+ |.+..++..+...+...|++++|.+.|+...+.. |+..........+...++.
T Consensus 111 ~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~ 181 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELD-------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDP 181 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCH
Confidence 999999999999999876 6677888999999999999999999999998863 4433222222334467789
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC---CCCHhhHHHHHHHHHhcCChHHHH
Q 040279 245 EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR---GL---NPDRFTYNSLMDGYCLVGRIDTAR 318 (626)
Q Consensus 245 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~ll~~~~~~g~~~~a~ 318 (626)
++|.+.|.+..... .++...+ .+. ....|+...+ ..++.+.+. .+ +.....|..+...+.+.|++++|.
T Consensus 182 ~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 182 KQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred HHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999997765432 2232222 222 2335555443 244444422 11 112357888899999999999999
Q ss_pred HHHHHHHhcCC
Q 040279 319 EIFLSMHSKGC 329 (626)
Q Consensus 319 ~~~~~~~~~~~ 329 (626)
..|++..+.++
T Consensus 257 ~~~~~Al~~~~ 267 (296)
T PRK11189 257 ALFKLALANNV 267 (296)
T ss_pred HHHHHHHHhCC
Confidence 99999998753
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-07 Score=89.51 Aligned_cols=201 Identities=10% Similarity=-0.012 Sum_probs=112.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHh
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGL-LPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVI 153 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 153 (626)
.-.|..+...+...|+.+.+...+.+..+... .++...... +. +..+...|++++|...+++..+.. +.+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~-----a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~ 78 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VE-----ALSAWIAGDLPKALALLEQLLDDY-PRDLL 78 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HH-----HHHHHHcCCHHHHHHHHHHHHHHC-CCcHH
Confidence 34555666666666777776666665543311 122222222 11 124556677777777777777652 33333
Q ss_pred HHHHHHHHHH----hcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcc
Q 040279 154 TYGTLINGFC----RTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVV 229 (626)
Q Consensus 154 ~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 229 (626)
.+.. ...+. ..+....+.+.++..... .+........+...+...|++++|.+.+++..+.. +.+..
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~ 149 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE-------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAW 149 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhccCcC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcH
Confidence 3332 11222 234444444444431111 23334444555666777777777777777777663 33455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPR-PNL--LTFNVMIDCLCKGGKINEANGLLELMIQ 291 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 291 (626)
.+..+...+...|++++|...+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6667777777777777777777777664321 121 2344566677777777777777777653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-07 Score=81.81 Aligned_cols=396 Identities=12% Similarity=0.073 Sum_probs=245.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGT 157 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (626)
+..++..+.+..++..|++++..-.+. .|....-.++++ ..|....++..|...++++-.. .|...-|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLg------yCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl 82 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLG------YCYYRLQEFALAAECYEQLGQL--HPELEQYRL 82 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHH------HHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 455666778888999999999877765 555555555554 4577888899999999998765 555555543
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 158 -LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 158 -li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
-...+.+.+.+..|+.+...+.... ..-......-....-..+++..+..+.++....| +..+.+...-
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~-------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNP-------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 3556678899999999998875421 0111111112223345788999999988887543 5556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------C------
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNP-------------D------ 297 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~------ 297 (626)
...+.|+++.|.+-|+...+-+--.....|+..+.. .+.|+.+.|++...++.++|++. |
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 667899999999999998876544456677766654 47788999999999888876431 1
Q ss_pred ---------HhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040279 298 ---------RFTYNSLMDGYCLVGRIDTAREIFLSMHSKG-CKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT 367 (626)
Q Consensus 298 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 367 (626)
...+|.-...+.+.|+++.|.+.+-.|.-+. .+.|+.|...+.-.- ..+++.+..+-+.-+...++ -.
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 1234555567788999999999888886432 234556554443221 24556666666666666533 45
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 040279 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVE-PDLSTYNILIDGLC-KNNCVQEAVKLFHMLEMNKFEFGIEIFNCLI 445 (626)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (626)
..||..++-.|++..-++.|-+++.+-.....+ .+...|+. ++++. -.-..++|.+-++.+...- .........-+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~v 387 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQV 387 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 678888999999999999888887765432211 23344443 33333 3446677766665443211 00011111111
Q ss_pred HHHHHcCC---HHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 446 DGLCKAGR---LDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 446 ~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
+--...++ +..+++-+++..+. -....-+-...|.+..++..+++.|..-.+.
T Consensus 388 Qe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 388 QEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 11111122 12223333333321 1122233345567788999999999887764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-10 Score=75.21 Aligned_cols=49 Identities=47% Similarity=0.855 Sum_probs=24.2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 226 PAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLC 274 (626)
Q Consensus 226 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (626)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444455555555555555555555555555455555555555544443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.6e-06 Score=77.90 Aligned_cols=416 Identities=13% Similarity=0.112 Sum_probs=230.9
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHH
Q 040279 67 THMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLT-LNILINCFGNKERGLCVENRIKEATWLFKNMIA 145 (626)
Q Consensus 67 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 145 (626)
++.+|. |+.+|+.|++-+..+ .+++++.+++++... .|.... |..-| .......+++..+++|.+.+.
T Consensus 13 ie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi-------~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 13 IEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYI-------ERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHH-------HHHHHhhhHHHHHHHHHHHHH
Confidence 344454 888888888766555 888888888888744 454432 33332 455667788888888888776
Q ss_pred CCCCCCHhHHHHHHHHHHh-cCChHH----HHHHHHHHHhC-CCCCCccccccHHHHHHHHHH---------HHhcCCcc
Q 040279 146 FGVRPDVITYGTLINGFCR-TGNLSV----ALRLHKKMVSG-DYENGLISKTNIFSYSIIIDS---------LCKEGLVD 210 (626)
Q Consensus 146 ~~~~~~~~~~~~li~~~~~-~g~~~~----A~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~---------~~~~g~~~ 210 (626)
. ..+...|...+.---+ .|+... -.+.|+-.... +.+ ..+...|+..+.. +..+.+++
T Consensus 82 k--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~d-----i~s~siW~eYi~FL~~vea~gk~ee~QRI~ 154 (656)
T KOG1914|consen 82 K--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMD-----IKSYSIWDEYINFLEGVEAVGKYEENQRIT 154 (656)
T ss_pred H--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccC-----cccchhHHHHHHHHHcccccccHHHHHHHH
Confidence 5 3455666655543332 222222 23334433332 211 2223344444433 33345677
Q ss_pred hHHHHHHHHhhCCCCCCcchHH------HHHHHH-------HhcCCHHHHHHHHHHHHH--CCCCCChhh----------
Q 040279 211 KAKELFLEMKGRGINPAVVVCT------TLIHGF-------CCAGNWEEVNGLFIEMLD--LGPRPNLLT---------- 265 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~------~li~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------- 265 (626)
..+++++++...-+.-=...|+ .=|+.. -+...+..|.++++++.. .|......+
T Consensus 155 ~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~ 234 (656)
T KOG1914|consen 155 AVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEI 234 (656)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHH
Confidence 7888888887641110011222 112211 133456778888877753 222111111
Q ss_pred -----HHHHHHHHHhcC------CH--HHHHHHHHHHH-hcCCCCCHhhHH-----HHHHHHHhcCC-------hHHHHH
Q 040279 266 -----FNVMIDCLCKGG------KI--NEANGLLELMI-QRGLNPDRFTYN-----SLMDGYCLVGR-------IDTARE 319 (626)
Q Consensus 266 -----~~~l~~~~~~~~------~~--~~a~~~~~~~~-~~~~~~~~~~~~-----~ll~~~~~~g~-------~~~a~~ 319 (626)
|..+|.---..+ .. ....-++++.. -.+..|+..... ..-+.+...|+ .+++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 222222111110 00 01111122211 112333321110 11122333333 345555
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040279 320 IFLSMHSKGCKHTVVSYNILINGYCKI---LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKL 396 (626)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 396 (626)
++++..+.-...+..+|..+...--.. ...+....+++++.......-..+|..++..-.+..-...|..+|.++.+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 555554432222333333333221111 23566677777776553333445677778888888888889999999888
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC--H
Q 040279 397 YNVEP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT--V 473 (626)
Q Consensus 397 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~ 473 (626)
.+..+ ++.++.+++..++ .++.+-|.++|+-=.+. +..++......++.+...++-..+..+|++....++.|+ .
T Consensus 395 ~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~ 472 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK 472 (656)
T ss_pred ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH
Confidence 76666 6667777877666 47888888888754433 244556667777888888888889999999888766655 5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
..|..++.--..-|+...+.++-+++...
T Consensus 473 ~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 473 EIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 68888888888889988888888777653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-10 Score=73.96 Aligned_cols=49 Identities=41% Similarity=0.783 Sum_probs=34.1
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777777777777777777766664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-06 Score=86.59 Aligned_cols=201 Identities=14% Similarity=0.044 Sum_probs=122.1
Q ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 040279 190 KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV---CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTF 266 (626)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 266 (626)
|.....|..+...+...|+.+.+.+.+....+.. +++... .......+...|++++|.+.+++..+..+. +...+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLAL 80 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHH
Confidence 3445667777777777888888777777665542 222221 222334556788888998888888776332 33333
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040279 267 NVMIDCLCK----GGKINEANGLLELMIQRGLNPD-RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILIN 341 (626)
Q Consensus 267 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (626)
.. ...+.. .+....+.+.++.. ....|+ ......+...+...|++++|...+++..+... .+...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHH
Confidence 32 222222 34444454444431 111222 23334455667778888888888888887642 24556677777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040279 342 GYCKILNVEEAMSLYRQIISNGVR-QTV--ITYNTLLSGLFQAGQAGYAQKLFDEMKL 396 (626)
Q Consensus 342 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 396 (626)
++...|++++|+..+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 788888888888888887764221 222 2344566777788888888888887753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-06 Score=76.15 Aligned_cols=315 Identities=12% Similarity=0.002 Sum_probs=168.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcch
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 230 (626)
++.-..-+.+.+...|++..|+..|..+++.+ |.+-.++..-...|...|+-..|+.=+++..+. +||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH
Confidence 44455668888888999999999999998765 444445555566788889888888888888775 555321
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040279 231 -CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNL--LTF------------NVMIDCLCKGGKINEANGLLELMIQRGLN 295 (626)
Q Consensus 231 -~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 295 (626)
-..-...+.++|+++.|..-|+..++..+.... ..+ ...+..+...|+...|+.....+++.. +
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 122335667899999999999988876432111 011 111222333444444554444444432 2
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 040279 296 PDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLL 375 (626)
Q Consensus 296 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 375 (626)
-|...+..-..+|...|++..|+.-++...+.... +...+..+-..+...|+.+.++...++.++. .||...+-.
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~-- 261 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP-- 261 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH--
Confidence 24444444444555555555554444444333211 3333444444444445555544444444442 222211110
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHHcC
Q 040279 376 SGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEF---GIEIFNCLIDGLCKAG 452 (626)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 452 (626)
.|- ...+..+.++.|. .....+++.+++.-.+...+..... ....+..+-.++...|
T Consensus 262 -~YK---klkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 262 -FYK---KLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred -HHH---HHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 011 1111111122111 1123445555555555555443221 1223344445556667
Q ss_pred CHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 453 RLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
++.+|++.-.++++. .|| ..++.--..+|.-..+++.|+.-|+...+.
T Consensus 322 ~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 777777777776663 333 666666666777667777777777777764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.04 E-value=9e-09 Score=95.48 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=85.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cC
Q 040279 377 GLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK----AG 452 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 452 (626)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. +..+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCch
Confidence 444556666666665432 244555566666677777777777777766542 22333334443332 23
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT-SKVVELL 531 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~ 531 (626)
++.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.+..+.+ +-++.++..++-+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 467777777776654 44566677777777777777777777777766543 33455666666666666666 5566666
Q ss_pred HHhhc
Q 040279 532 HKMAE 536 (626)
Q Consensus 532 ~~~~~ 536 (626)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 66665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-06 Score=78.13 Aligned_cols=319 Identities=12% Similarity=0.090 Sum_probs=196.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 73 PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDV 152 (626)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (626)
.++.-..-+...+...|++..|+.-|..+++ .|+..|.++.+ .+..|...|+-..|+.-+.++++. +||-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifr----RaT~yLAmGksk~al~Dl~rVlel--KpDF 105 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFR----RATVYLAMGKSKAALQDLSRVLEL--KPDF 105 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHH----HHHHHhhhcCCccchhhHHHHHhc--CccH
Confidence 3555566688888899999999999998884 45566666654 346788889999999999999886 7775
Q ss_pred hH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchH
Q 040279 153 IT-YGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVC 231 (626)
Q Consensus 153 ~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (626)
.. ...-...+.+.|.+++|..=|+.+++.+...+. ....+..+ --.++-.. .
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~----~~eaqskl-------~~~~e~~~----------------l 158 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL----VLEAQSKL-------ALIQEHWV----------------L 158 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch----hHHHHHHH-------HhHHHHHH----------------H
Confidence 43 344567888999999999999999987622111 11111111 00011111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLV 311 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 311 (626)
...+..+...|+...|++....+++.. +.|...+..-..+|...|++..|+.=++...+..-. +..++--+-..+...
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhh
Confidence 112223344555666666666655542 224555555555566666666665555555444222 333333444555555
Q ss_pred CChHHHHHHHHHHHhcCCCCChhh----HHHH---------HHHHHhcCChHHHHHHHHHHHHCCCCCChhhH---HHHH
Q 040279 312 GRIDTAREIFLSMHSKGCKHTVVS----YNIL---------INGYCKILNVEEAMSLYRQIISNGVRQTVITY---NTLL 375 (626)
Q Consensus 312 g~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~ 375 (626)
|+.+.++..+++.++.+ ||... |..+ +......++|.++++..+...+.........+ ..+-
T Consensus 237 gd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 66666655555555542 23211 1110 22345677888888888888776433223333 3444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 376 SGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK 433 (626)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 433 (626)
..+...+++.+|+..-.+++... +.|..++.--..+|.-...++.|+.-|+...+.+
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 56667788888988888887642 3347788888888888888999999998888765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-06 Score=84.99 Aligned_cols=353 Identities=16% Similarity=0.146 Sum_probs=200.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG 237 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (626)
.+.+.....++.+|+.+++.+.... ....-|..+.+.|...|+++.|.++|-+. ..++-.|..
T Consensus 738 aieaai~akew~kai~ildniqdqk--------~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~m 800 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--------TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDM 800 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--------cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHH
Confidence 3455556777888888888776543 22345667778888888888888887653 245667788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 040279 238 FCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTA 317 (626)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 317 (626)
|.+.|+|++|.++-.+.. |+......|..-..-.-+.|++.+|.+++-.+. .|+ ..|.+|-+.|..+..
T Consensus 801 y~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddm 869 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDM 869 (1636)
T ss_pred HhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHH
Confidence 888888888888776653 345456666666666777888888887764432 233 246778888888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH--
Q 040279 318 REIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMK-- 395 (626)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 395 (626)
+++..+-... .-..+...+..-+-..|+...|...|-+..+ |...+.+|...+-|++|.++-+.--
T Consensus 870 irlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~ 937 (1636)
T KOG3616|consen 870 IRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGA 937 (1636)
T ss_pred HHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccc
Confidence 7776654322 2334556667777778888888777655432 4455566666666666655433211
Q ss_pred ------------hCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 040279 396 ------------LYNVEPDLS------TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNA 457 (626)
Q Consensus 396 ------------~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 457 (626)
..|-..-+. ....-++.-+..+.++-|..+-+-..+.. ...+...+...+...|+++.|
T Consensus 938 n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~eda 1014 (1636)
T KOG3616|consen 938 NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDA 1014 (1636)
T ss_pred cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhh
Confidence 000000000 01111222233444444444443333222 112233344456678899998
Q ss_pred HHHHHhcccCCCCCCHhHHHH-------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 040279 458 WELFHKLPQKGLVPTVVTYSI-------------------MIHGLCRKGKLEKANDFLLYMEKNGCAPN--VVTFNTLMH 516 (626)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~ 516 (626)
-+.+-+..+.+ .-..||.. .+..+.+..+|..|.++-+.- .|+ ...+..-.+
T Consensus 1015 skhyveaikln--tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h-----~~~~l~dv~tgqar 1087 (1636)
T KOG3616|consen 1015 SKHYVEAIKLN--TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH-----CEDLLADVLTGQAR 1087 (1636)
T ss_pred hHhhHHHhhcc--cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh-----ChhhhHHHHhhhhh
Confidence 88777766531 11122211 122233334444444332221 222 234555555
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.....|++.+|..++-++.+ |+.. ++.|..++.|.+|.++.+.+
T Consensus 1088 ~aiee~d~~kae~fllrank------p~i~-----l~yf~e~~lw~dalri~kdy 1131 (1636)
T KOG3616|consen 1088 GAIEEGDFLKAEGFLLRANK------PDIA-----LNYFIEAELWPDALRIAKDY 1131 (1636)
T ss_pred ccccccchhhhhhheeecCC------CchH-----HHHHHHhccChHHHHHHHhh
Confidence 66677888888777766654 5432 34455566666666665543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-05 Score=78.34 Aligned_cols=245 Identities=15% Similarity=0.096 Sum_probs=129.8
Q ss_pred CCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-C--------CCCCHhhHHHHHHhhhhh
Q 040279 53 IINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSI-G--------LLPDFLTLNILINCFGNK 123 (626)
Q Consensus 53 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g--------~~p~~~~~~~ll~~~~~l 123 (626)
.|+.+.|.+..+.+ .+..+|..++..+.+..+.+-|.-.+-.|... | -.|+.......
T Consensus 741 iG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvA------- 807 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVA------- 807 (1416)
T ss_pred eccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHH-------
Confidence 36899998888876 35678999999999888887776555544311 0 02221111111
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
......|.+++|..+|++..+. ..|=..|-..|.+++|.++-+.--+.. . ..+|......+
T Consensus 808 -vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH--------L-r~Tyy~yA~~L 868 (1416)
T KOG3617|consen 808 -VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH--------L-RNTYYNYAKYL 868 (1416)
T ss_pred -HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee--------h-hhhHHHHHHHH
Confidence 1123456677777777766542 334445556677777776665432211 1 23455555555
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 283 (626)
-..++.+.|++.|++.... -..++..|. .++.......+.+ .|...|.-.....-..|+.+.|+
T Consensus 869 ear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred HhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHH
Confidence 5666666666666654321 111111111 1111111111111 13334444444455566666666
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 284 GLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQII 360 (626)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 360 (626)
.+|..... |-.+++..+-.|+.++|-++-++- | |......+.+.|-..|++.+|...|-++.
T Consensus 933 ~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 933 SFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66665543 234445555566666666554432 1 44555566666666667666666665544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.6e-06 Score=91.47 Aligned_cols=336 Identities=12% Similarity=0.007 Sum_probs=210.6
Q ss_pred HHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--hhhHHHHHHH
Q 040279 201 DSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGP------RPN--LLTFNVMIDC 272 (626)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~ 272 (626)
......|+++.+..+++.+.......+..........+...|+++++..++......-. .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653221112333334455566788999999999887754311 111 1122233455
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---C--ChhhHHHHHHHH
Q 040279 273 LCKGGKINEANGLLELMIQRGLNPDR----FTYNSLMDGYCLVGRIDTAREIFLSMHSKGCK---H--TVVSYNILINGY 343 (626)
Q Consensus 273 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~ 343 (626)
+...|++++|...+++....-...+. ...+.+...+...|+++.|...+++....... + ...+...+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 66889999999999988764111121 23345556677899999999998887653111 1 123445566677
Q ss_pred HhcCChHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHH
Q 040279 344 CKILNVEEAMSLYRQIISN----GVR--Q-TVITYNTLLSGLFQAGQAGYAQKLFDEMKLY--NVEP--DLSTYNILIDG 412 (626)
Q Consensus 344 ~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~ 412 (626)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998886642 211 1 1223445556677789999999998887542 1112 12344445567
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCcCHH--HH--HHHHHHHHHcCCHHHHHHHHHhcccCCCCCC---HhHHHHHHHHH
Q 040279 413 LCKNNCVQEAVKLFHMLEMNK--FEFGIE--IF--NCLIDGLCKAGRLDNAWELFHKLPQKGLVPT---VVTYSIMIHGL 483 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 483 (626)
+...|+.+.|...++...... ...... .. ...+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778999999999988765321 111111 00 1122444568899999999877665211111 11244667788
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 484 CRKGKLEKANDFLLYMEKN----GCAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999988653 32222 23566677788899999999999999987
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.7e-05 Score=76.78 Aligned_cols=202 Identities=12% Similarity=0.108 Sum_probs=96.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040279 298 RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSG 377 (626)
Q Consensus 298 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (626)
+.+|..+..+..+.|...+|++-|-+. .|+..|..+++...+.|.+++-.+.+....+..-.|... +.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345555555555555555555443221 144555566666666666666666555555443333322 345555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 040279 378 LFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNA 457 (626)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 457 (626)
|++.++..+..+.+ .-|+......+.+-|...|.++.|.-+|..+ ..|..+...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 66655555433322 1345555555555555555555555555422 2344455555555555555
Q ss_pred HHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 458 WELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
...-+++. +..+|..+-.+|...+.+.-| +|--.++-....-+..++.-|...|-+++.+.+++..
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 54443332 344444444444443332221 1111112222333444555555555555555555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.4e-08 Score=93.96 Aligned_cols=250 Identities=12% Similarity=0.048 Sum_probs=141.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 345 KILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
+.|++.+|.-.|+...... +.+...|..|.......++-..|+..+.+..+.+ +.+......|.-.|...|.-.+|.+
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 3444444444444444431 2233444444444444444444555554444432 2233344444444444444445555
Q ss_pred HHHHHHHCCCCcCHHHHHH----H---HHHHHHcCCHHHHHHHHHhcc-cCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040279 425 LFHMLEMNKFEFGIEIFNC----L---IDGLCKAGRLDNAWELFHKLP-QKGLVPTVVTYSIMIHGLCRKGKLEKANDFL 496 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~----l---~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (626)
.++..+...++ -...... . -..+.....+....++|-++. ..+..+|+.+...|...|--.|++++|...|
T Consensus 375 ~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 375 MLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 54443322110 0000000 0 000011111223333333333 3444467888888888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhhc
Q 040279 497 LYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYRAC 575 (626)
Q Consensus 497 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 575 (626)
+.++... +-|..+|+.|+..+....+.++|+..|.++++ +.|. ..+...|+-.|...|.++||.+.|-+++...
T Consensus 454 ~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 454 EAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9998853 44667889999888888889999999999988 8887 4677788888999999999999888775432
Q ss_pred cccc--cccC----CchhhhhhhheeccCCccch
Q 040279 576 LYVT--IFQP----SSLGSMIGCTVRLMPQPEMS 603 (626)
Q Consensus 576 ~~~~--~~~p----~~~~~l~~~~~~~~~~~~~~ 603 (626)
.-.. ...| .+|..|... +..++..+..
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~a-ls~~~~~D~l 561 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLA-LSAMNRSDLL 561 (579)
T ss_pred hcccccccCCcchHHHHHHHHHH-HHHcCCchHH
Confidence 2211 1111 347777633 4556666633
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.1e-06 Score=93.60 Aligned_cols=338 Identities=11% Similarity=-0.008 Sum_probs=213.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCC------CCC--cchH
Q 040279 160 NGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGI------NPA--VVVC 231 (626)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~ 231 (626)
......|+++.+...++.+.... ...++.........+...|++++|...+......-- .+. ....
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~------~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~ 455 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEV------LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFN 455 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHH------HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHH
Confidence 34445677777777776652111 111222334445556678999999999987754310 111 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC--CHhhHH
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNL----LTFNVMIDCLCKGGKINEANGLLELMIQRGL---NP--DRFTYN 302 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~ 302 (626)
..+...+...|++++|...+++........+. ...+.+...+...|++++|...+++.....- .+ ...++.
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 23344566899999999999998764222221 2345566677889999999999988765311 11 123445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc----CCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC--ChhhH
Q 040279 303 SLMDGYCLVGRIDTAREIFLSMHSK----GCK--H-TVVSYNILINGYCKILNVEEAMSLYRQIISNG--VRQ--TVITY 371 (626)
Q Consensus 303 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~ 371 (626)
.+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+++..... ..+ ....+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 5667788899999999998886653 211 1 12234455566777899999999998876531 111 22334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHH
Q 040279 372 NTLLSGLFQAGQAGYAQKLFDEMKLYN--VEPDLS--T-Y-NILIDGLCKNNCVQEAVKLFHMLEMNKFEFG---IEIFN 442 (626)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 442 (626)
..+...+...|+++.|...+....... ...... . . ...+..+...|+.+.|..++........... ...+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 445667788999999999998875421 111111 0 0 1122344568999999999876553221111 11234
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccC----CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQK----GLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNG 503 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (626)
.+..++...|++++|...+++.... |..++ ..++..+..++...|+.++|.+.+.+..+..
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5677788999999999999987652 22222 3456677788999999999999999998864
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-08 Score=90.87 Aligned_cols=247 Identities=14% Similarity=0.057 Sum_probs=153.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 040279 307 GYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGY 386 (626)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (626)
-+.-.|.+..++.-.+ ......+.+......+.+++...|+++.++ .++... ..|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3444566666665444 222211112334445566777777766544 233222 24455444444443333344445
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 040279 387 AQKLFDEMKLYNVEP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLP 465 (626)
Q Consensus 387 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 465 (626)
+..-++........+ +..........+...|++++|+++++.. .+.+.....+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 554444443332222 2222223334566789999999988542 367777888999999999999999999998
Q ss_pred cCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 040279 466 QKGLVPTVVTYSIMIHGLCR----KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNL 541 (626)
Q Consensus 466 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 541 (626)
+. ..| .+...++.++.. ...+.+|..+|+++.+. ..++..+++.+..++...|++++|.++++++.. .
T Consensus 159 ~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~----~ 230 (290)
T PF04733_consen 159 QI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE----K 230 (290)
T ss_dssp CC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC----C
T ss_pred hc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----h
Confidence 74 334 334444444432 23689999999998775 578889999999999999999999999999987 5
Q ss_pred CC-CHHHHHHHHHHHHccCCH-hHHHHHHHHHH
Q 040279 542 VP-DDTTFSIVVDLLAKDEKY-HECSAVSKSSY 572 (626)
Q Consensus 542 ~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 572 (626)
.| ++.++..++-+....|+. +.+.++++++.
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 56 567888888888888888 66777888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.8e-05 Score=72.43 Aligned_cols=410 Identities=11% Similarity=0.078 Sum_probs=240.4
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCc
Q 040279 149 RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAV 228 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 228 (626)
+-|..+|+.||+-+... .++++.+.++++... .+.....|..-+....+.++++..+++|.+.... ..+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnl 86 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNL 86 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhH
Confidence 55788888888877666 888889999888765 3666778888888888888999999999887766 3356
Q ss_pred chHHHHHHHHHh-cCCHHH----HHHHHHHHH-HCCCCC-ChhhHHHHHHH---------HHhcCCHHHHHHHHHHHHhc
Q 040279 229 VVCTTLIHGFCC-AGNWEE----VNGLFIEML-DLGPRP-NLLTFNVMIDC---------LCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 229 ~~~~~li~~~~~-~~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~ 292 (626)
..|..-+.--.+ .|+... ..+.|+-.+ +.|..+ +...|+..+.. +..+.+++...++++++...
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 677766653322 222222 222333322 223222 22234444432 23334566677777777654
Q ss_pred CCCCCHhhH------HHHHHH-------HHhcCChHHHHHHHHHHHhc--CCCCChhh---------------HHHHHHH
Q 040279 293 GLNPDRFTY------NSLMDG-------YCLVGRIDTAREIFLSMHSK--GCKHTVVS---------------YNILING 342 (626)
Q Consensus 293 ~~~~~~~~~------~~ll~~-------~~~~g~~~~a~~~~~~~~~~--~~~~~~~~---------------~~~l~~~ 342 (626)
.+..=...| ..-++. --+...+..|.++++++... |......+ |..+|..
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 221111111 111111 11233466677777776542 33222222 3333332
Q ss_pred HHhcCC--------hHHHHHHHHHHHH-CCCCCChhh-HH----HHHHHHHHcCC-------HHHHHHHHHHHHhCCCCC
Q 040279 343 YCKILN--------VEEAMSLYRQIIS-NGVRQTVIT-YN----TLLSGLFQAGQ-------AGYAQKLFDEMKLYNVEP 401 (626)
Q Consensus 343 ~~~~~~--------~~~A~~~~~~~~~-~~~~~~~~~-~~----~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~ 401 (626)
-..++- -....-.+++... .+..|+... +. .....+...|+ .+++..+++.....-..-
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 211110 1112222333222 122222211 00 11112333333 345556666554432223
Q ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC-CHhHHH
Q 040279 402 DLSTYNILIDGLC---KNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP-TVVTYS 477 (626)
Q Consensus 402 ~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 477 (626)
+...|..+.+.-- ..+..+....+++++.......-.-+|..++..-.+..-+..|..+|.++.+.+..+ ++...+
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 3334443332211 112355666666666644333334567888888888888999999999998876666 567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--HHHHHHHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--DTTFSIVVDLL 555 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 555 (626)
+++.-|+ .++.+-|.++|+--.++ ...++.--...+.-+...++-..+..+|++.+. .++.|+ ...|..++..-
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~--s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT--SVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh--ccCChhhhHHHHHHHHHHH
Confidence 8887766 47889999999987765 233444456677778888999999999999998 566765 57899999999
Q ss_pred HccCCHhHHHHHHHHHH
Q 040279 556 AKDEKYHECSAVSKSSY 572 (626)
Q Consensus 556 ~~~g~~~~A~~~~~~~~ 572 (626)
..-|++..+.++-++..
T Consensus 483 S~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRF 499 (656)
T ss_pred HhcccHHHHHHHHHHHH
Confidence 99999999999988865
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=0.00014 Score=74.94 Aligned_cols=204 Identities=12% Similarity=0.105 Sum_probs=147.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
.+..|+.+..+-.+.+...+|++-|-+. .|+..|..++....+.|.+++..+.+....+..-.|.. -+.++-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 4567888888888888888887766443 26677888888888888888888888877766545543 356788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
+|++.+++.+-...+. -|+......+.+-|...|.++.|.-+|... ..|..|...+...|++..
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHH
Confidence 8888888777665542 467777777888888888888888777643 447778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
|...-+++ .+..+|..+-.+|...+.+.-|. |-- ..+-...+-+..++..|...|-++|-..+++..
T Consensus 1239 AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG--L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1239 AVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG--LNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC--ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 87755443 25678888888888776654432 211 223335667788888888888888888888775
Q ss_pred H
Q 040279 572 Y 572 (626)
Q Consensus 572 ~ 572 (626)
+
T Consensus 1306 L 1306 (1666)
T KOG0985|consen 1306 L 1306 (1666)
T ss_pred h
Confidence 3
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=90.27 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=184.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 040279 307 GYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGY 386 (626)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (626)
-+.+.|++.+|.-.|+...+.++. +...|..|......+++-..|+..+++..+.. +.+......|...|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 356788899999999988887533 77889999999999999999999999998873 3366777788888888888889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHHcCCH
Q 040279 387 AQKLFDEMKLYNVEPDLSTYNILI-----------DGLCKNNCVQEAVKLFHMLE-MNKFEFGIEIFNCLIDGLCKAGRL 454 (626)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~ 454 (626)
|.+.++..+... |. |..+. ..+.....+....++|-++. ..+..+|+.+...|.-.|--.|++
T Consensus 372 Al~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 999988886542 11 00000 01111122334444554443 444457888899999899999999
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVV-TFNTLMHGFLQNNKTSKVVELLHK 533 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 533 (626)
++|...|+.++... +-|..+||.|...++...+.++|+..|.++++ +.|+.+ +...|.-.|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999853 33578999999999999999999999999999 578854 667788889999999999999888
Q ss_pred hhcCCCC-------CCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 040279 534 MAEPERN-------LVPDDTTFSIVVDLLAKDEKYHECSAVS 568 (626)
Q Consensus 534 ~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 568 (626)
++....+ -.++...|..|-.++...++.|-+.+..
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 7651111 1123456777776777777766554443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.8e-06 Score=88.19 Aligned_cols=168 Identities=13% Similarity=0.056 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040279 336 YNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK 415 (626)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (626)
|.++++.-...|.-+...++|+++.+- ......|..|...|.+.++.++|.++++.|.+. .......|...+..+.+
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhc
Confidence 333333333344444444444444432 111233444444444444444444444444432 11233344444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 040279 416 NNCVQEAVKLFHMLEMNKFE-FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKAND 494 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 494 (626)
.++-+.|..++.+..+.-+. .......-.++.-.+.|+.+.+..+|+..+.. .+.....|+.++..-.++|+.+.+..
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHH
Confidence 44444444444444332111 12223333333444455555555555554443 12234445555555555555555555
Q ss_pred HHHHHHHCCCCCC
Q 040279 495 FLLYMEKNGCAPN 507 (626)
Q Consensus 495 ~~~~~~~~~~~p~ 507 (626)
+|+++...++.|-
T Consensus 1656 lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1656 LFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHhcCCChh
Confidence 5555555444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-06 Score=83.82 Aligned_cols=215 Identities=15% Similarity=0.058 Sum_probs=175.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 300 TYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLF 379 (626)
Q Consensus 300 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (626)
.-..+...+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..+. +|++..|..+.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456778888999999999998765 3556788899999999999999988873 678888988888887
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 040279 380 QAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWE 459 (626)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 459 (626)
...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888776432 11112222234689999999998776655 5677889889899999999999999
Q ss_pred HHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 460 LFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 460 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.|...... .|| ...||.+..+|.+.|+-.+|...+.+..+.+ .-+...|...+....+-|.+++|++.+.++.+
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99998874 444 7789999999999999999999999999987 66777888888889999999999999999876
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00035 Score=70.64 Aligned_cols=264 Identities=16% Similarity=0.135 Sum_probs=161.2
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040279 39 TQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILIN 118 (626)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 118 (626)
++-..........| -+++|..+|.+..+ |..|-..|...|.|++|.++-+.--.-.+...-..|.
T Consensus 801 e~eakvAvLAieLg--MlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA---- 865 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELG--MLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA---- 865 (1416)
T ss_pred chhhHHHHHHHHHh--hHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH----
Confidence 33334444444544 78999999988733 5556667788899999988877544332222222222
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHH----------HHCC---------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNM----------IAFG---------VRPDVITYGTLINGFCRTGNLSVALRLHKKMV 179 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 179 (626)
.-+...++.+.|++.|++. +... -..|...|.-...-+-..|+.+.|+.+|..+.
T Consensus 866 ------~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 866 ------KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred ------HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 2233456777787777653 2111 01244455556666667888888888888753
Q ss_pred hCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 180 SGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGP 259 (626)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 259 (626)
.|.++++..+-+|+.++|-++-++-. |......|.+.|-..|++.+|...|.+...
T Consensus 940 ---------------D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa--- 995 (1416)
T KOG3617|consen 940 ---------------DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA--- 995 (1416)
T ss_pred ---------------hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---
Confidence 36678888888999999988876643 555667788889999999999998877642
Q ss_pred CCChhhHHHHHHHHH---------------hcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH-
Q 040279 260 RPNLLTFNVMIDCLC---------------KGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLS- 323 (626)
Q Consensus 260 ~~~~~~~~~l~~~~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~- 323 (626)
|...|+.|- ...+.-.|-++|++. |.. +...+..|-+.|.+.+|+++--+
T Consensus 996 ------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 996 ------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred ------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhh
Confidence 333333321 122233333444332 111 22334556677777777665211
Q ss_pred -------HHhc--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 324 -------MHSK--GCKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 324 -------~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
+... ....|+...+.-...++...++++|..++-...+
T Consensus 1062 qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1222 2234666677777788888888888887765543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.3e-06 Score=87.86 Aligned_cols=219 Identities=11% Similarity=0.009 Sum_probs=140.0
Q ss_pred hhhcCCHHHHHHHHHHHHHCCCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 127 LCVENRIKEATWLFKNMIAFGVRP-----DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 127 ~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
....++.++|++++++.+.. +.+ -...|.++++.....|.-+...++|+++.+.- .....|..|..
T Consensus 1468 ~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--------d~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--------DAYTVHLKLLG 1538 (1710)
T ss_pred HhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--------chHHHHHHHHH
Confidence 44556677777777766654 211 12356666666666777777777777776632 33456777777
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHH
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRP-NLLTFNVMIDCLCKGGKIN 280 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 280 (626)
.|.+.+.+++|.++++.|.++ ......+|...+..+.++++-+.|..++.+.++.-+.. ........+..-.+.|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 777777777777777777765 23456677777777777777777777777776642221 1223344455556777777
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHH
Q 040279 281 EANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHT--VVSYNILINGYCKILNVEEAMSLY 356 (626)
Q Consensus 281 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 356 (626)
.+..+|+..+... +.....|+..+++-.+.|+.+.+..+|+++...++.+- -..|...+..--+.|+-..+..+=
T Consensus 1618 RGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred hhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 7777777777652 33556777777777777777777788877777765433 234555555555556655444433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.4e-07 Score=75.78 Aligned_cols=89 Identities=6% Similarity=-0.090 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLA 556 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 556 (626)
.+..++...|++++|...|+...... +.+...|..+..++...|++++|...|+++.. +.| +...+..++.++.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~----l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM----LDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHH
Confidence 33444444555555555555554432 33344444444455555555555555555544 334 3344445555555
Q ss_pred ccCCHhHHHHHHHHH
Q 040279 557 KDEKYHECSAVSKSS 571 (626)
Q Consensus 557 ~~g~~~~A~~~~~~~ 571 (626)
..|++++|.+.++++
T Consensus 104 ~~g~~~eAi~~~~~A 118 (144)
T PRK15359 104 MMGEPGLAREAFQTA 118 (144)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-06 Score=79.30 Aligned_cols=191 Identities=15% Similarity=0.061 Sum_probs=120.5
Q ss_pred CCCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 040279 34 VSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL 111 (626)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 111 (626)
.+.....+......+...| ++++|...|++++...|.. ...++..++..+.+.|++++|+..++++.+. .|+..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~ 104 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSG--DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHP 104 (235)
T ss_pred ccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCC
Confidence 3444555666666666666 9999999999998876642 1247788999999999999999999999876 45433
Q ss_pred hHHHHHHhhhhhhhhhhh--------cCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 112 TLNILINCFGNKERGLCV--------ENRIKEATWLFKNMIAFGVRPD-VITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 112 ~~~~ll~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
.....+-. ++..+.. .|++++|.+.|+++... .|+ ...+..+..... . ....
T Consensus 105 ~~~~a~~~---~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~---- 165 (235)
T TIGR03302 105 DADYAYYL---RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL---- 165 (235)
T ss_pred chHHHHHH---HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH----
Confidence 32111100 1223333 37899999999999876 333 223322211110 0 0000
Q ss_pred CCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 183 YENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGI--NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
......+...+.+.|++++|...++....... +.....+..+..++.+.|++++|...++.+...
T Consensus 166 ----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 ----------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01112455567777888888888887776521 122456777778888888888888877776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-05 Score=74.67 Aligned_cols=203 Identities=10% Similarity=0.018 Sum_probs=122.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 040279 346 ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAG-QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCV--QEA 422 (626)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A 422 (626)
.+..++|+.+..++++.. +.+...|+.....+...| ++++++..++++.+.. +.+..+|+.....+.+.|.. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 456666666666666642 223344544444455555 4567777777666543 33444455444444444442 556
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc---CC----HHHHHHH
Q 040279 423 VKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK---GK----LEKANDF 495 (626)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~ 495 (626)
+.+++.+.+.. +-+..+|+....++...|+++++++.++++++.+.. |...|+....++.+. |. .++.+++
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 66676666554 456677777777777777777777777777775433 566666655555443 22 2456777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHc
Q 040279 496 LLYMEKNGCAPNVVTFNTLMHGFLQN----NKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAK 557 (626)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 557 (626)
..+++... +-|...|+.+...+... ++..+|.+++.+..+ ..| +...+..|++.|..
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~----~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS----KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc----ccCCcHHHHHHHHHHHHh
Confidence 76777653 55667787777777663 344567777777765 445 45667777777765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.9e-06 Score=73.11 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=117.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
..+...|+-+.+..+....... .+-|......++....+.|++..|+..|++..... |+|..+|+.+.-+|.
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------p~d~~~~~~lgaald 145 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------CCChhhhhHHHHHHH
Confidence 4556667777777776665433 23455666678888888888888888888888776 788888888888888
Q ss_pred hcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040279 205 KEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANG 284 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 284 (626)
+.|+++.|..-|.+..+.- +-+....+.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHh
Confidence 8888888888888887763 335677788888888888888888888888766433 66666777777788888888888
Q ss_pred HHHHHH
Q 040279 285 LLELMI 290 (626)
Q Consensus 285 ~~~~~~ 290 (626)
+...-.
T Consensus 224 i~~~e~ 229 (257)
T COG5010 224 IAVQEL 229 (257)
T ss_pred hccccc
Confidence 766544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-06 Score=77.83 Aligned_cols=184 Identities=10% Similarity=-0.023 Sum_probs=112.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--HHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDL---STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI--EIF 441 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 441 (626)
....+..+...+...|+++.|...++++.... +.+. ..+..+..++...|++++|...++.+.+....... ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44556666667777778888877777776542 1121 34556667777777777777777777654321111 134
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHhcccCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040279 442 NCLIDGLCKA--------GRLDNAWELFHKLPQKGLVPTV-VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFN 512 (626)
Q Consensus 442 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (626)
..+..++... |++++|.+.++++.+. .|+. ..+..+..... ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 4444455443 5666777777776654 2332 22222111100 000 000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+...+.+.|++++|...++++++. ..-.| ....+..++.++.+.|++++|.++++.+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN-YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH-CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566788999999999999999871 11123 35788899999999999999999998874
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-06 Score=84.47 Aligned_cols=216 Identities=13% Similarity=0.060 Sum_probs=152.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (626)
.-..+...+...|-...|+.+|++.. .|...+.+|...|+..+|..+..+..++ +|+...|..
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34556677778888888888888743 4566777888888888888888777764 677888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 040279 234 LIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGR 313 (626)
Q Consensus 234 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 313 (626)
+.+......-+++|.++.+..... +-..+.......++++++.+.|+...+.+ +.-..+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 877776666677888777665332 11222222334678888888888776653 3345566666777777888
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 040279 314 IDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDE 393 (626)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 393 (626)
++.|.+.|.......+ -+...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+......|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 8888888887776532 255678888888888888888888888887775 34556666667777777888888887777
Q ss_pred HHh
Q 040279 394 MKL 396 (626)
Q Consensus 394 ~~~ 396 (626)
+..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.4e-06 Score=71.77 Aligned_cols=158 Identities=10% Similarity=0.075 Sum_probs=116.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 407 NILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 407 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
..+-..+...|+-+....+........ +.+.......+....+.|++..|...+.+.... -++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 444555666677777777766654332 456666666777788888888888888888775 356788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 040279 487 GKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECS 565 (626)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 565 (626)
|+.++|..-|.+..+.. +-++...+.+.-.+.-.|+.+.|..++..... ..+ |..+-..+..+....|++++|+
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l----~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYL----SPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh----CCCCchHHHHHHHHHHhhcCChHHHH
Confidence 88888888888888752 33556777888888888888888888888876 344 6667777888888888888888
Q ss_pred HHHHHH
Q 040279 566 AVSKSS 571 (626)
Q Consensus 566 ~~~~~~ 571 (626)
.+...-
T Consensus 223 ~i~~~e 228 (257)
T COG5010 223 DIAVQE 228 (257)
T ss_pred hhcccc
Confidence 877653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.4e-05 Score=72.85 Aligned_cols=205 Identities=11% Similarity=0.032 Sum_probs=114.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC-CcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhc
Q 040279 163 CRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG-LVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCA 241 (626)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (626)
...++.++|+.+.++++..+ |.+..+|+....++...| +++++++.++++.+.. +.+..+|+.....+.+.
T Consensus 48 ~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 34456667777777777665 455556665555555665 4577777777776653 22445566554444455
Q ss_pred CCH--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc---CC---
Q 040279 242 GNW--EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLV---GR--- 313 (626)
Q Consensus 242 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~--- 313 (626)
|+. ++++++++++++..++ +..+|+...-++...|++++++..++++++.++. +...|+.......+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 542 5566777777665444 6667776666666777777777777777766533 444555444433332 11
Q ss_pred -hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 314 -IDTAREIFLSMHSKGCKHTVVSYNILINGYCKI----LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLF 379 (626)
Q Consensus 314 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (626)
.+........+.... +-+...|+.+...+... ++..+|.+.+.+..+.+ +.+......|+..|.
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 234555554555443 22555666666655552 23344666665555432 224444555555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-05 Score=68.16 Aligned_cols=171 Identities=17% Similarity=0.139 Sum_probs=110.6
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 355 LYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKF 434 (626)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 434 (626)
+.+.+.......+......-...|...+++++|.+...... +......=+..+.+..+.+-|.+.++.|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34444443233232333333456777788888887776622 23333444555667777888888888887543
Q ss_pred CcCHHHHHHHHHHHHH----cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040279 435 EFGIEIFNCLIDGLCK----AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVT 510 (626)
Q Consensus 435 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 510 (626)
+..+.+.|..++.+ .+++..|.-+|++|.++ ..|+..+.+-.+.++...|++++|..++++...+. ..++.+
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 55666666666654 34677888888888775 56788888888888888888888888888888764 446667
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHhhc
Q 040279 511 FNTLMHGFLQNNKTSK-VVELLHKMAE 536 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~-a~~~~~~~~~ 536 (626)
+..++-+-...|+..+ ..+.+.+...
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 7666666556665533 4455666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-05 Score=68.38 Aligned_cols=136 Identities=15% Similarity=0.055 Sum_probs=59.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
+....|+.+.|...++.+...- |-+..+...-...+...|++++|+++++.+++.+ +.|..++-.-+......|+.-+
T Consensus 61 AAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHH
Confidence 3334445555555555444332 2222222222222334455555555555554432 2233333333333344444445
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDL 554 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 554 (626)
|++-+....+. +..|...|..+...|...|++++|.-.+++++- +.| ++..+..+++.
T Consensus 139 aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll----~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 139 AIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL----IQPFNPLYFQRLAEV 197 (289)
T ss_pred HHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH----cCCCcHHHHHHHHHH
Confidence 55444444443 344555555555555555555555555555544 444 33334444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00099 Score=68.34 Aligned_cols=219 Identities=13% Similarity=0.118 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAV--AKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
++..|.+..+.+++..|. ..|..++.++ .|.|..++|..+++.....+.. |..|...+- ..|...+.
T Consensus 24 qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~-------~~y~d~~~ 92 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQ-------NVYRDLGK 92 (932)
T ss_pred HHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHH-------HHHHHHhh
Confidence 577777777776665443 2233444443 4677777777666665544333 444444443 34556677
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC-Cc--
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG-LV-- 209 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~-- 209 (626)
.++|..+|++.... .|+......+..+|.+.+++.+-.+.--++-+. .|.++..+-++++.+.+.- ..
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------FPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcccchHHHHHHHHHHhccCCcc
Confidence 77777777776655 455666666666666666555433222222221 2333444444444443321 11
Q ss_pred -------chHHHHHHHHhhCCCCC-CcchHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 040279 210 -------DKAKELFLEMKGRGINP-AVVVCTTLIHGFCCAGNWEEVNGLFI-EMLDLGPRPNLLTFNVMIDCLCKGGKIN 280 (626)
Q Consensus 210 -------~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 280 (626)
.-|.+.++.+.+.+-+. +..-...-...+...|++++|++++. ...+.-..-+...-+.-+..+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 12344444444432010 11111112223335566666666662 2222222223333344455566666666
Q ss_pred HHHHHHHHHHhcC
Q 040279 281 EANGLLELMIQRG 293 (626)
Q Consensus 281 ~a~~~~~~~~~~~ 293 (626)
+..++-.++...|
T Consensus 244 ~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 244 ELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-05 Score=82.42 Aligned_cols=153 Identities=13% Similarity=0.119 Sum_probs=88.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcch
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 230 (626)
+..++..+..+|-+.|+.++|..+++++++.+ +.|+.+.+.+...|... ++++|++++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Confidence 34566677777777777777777777777766 56677777777777777 777777777766653
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHhhHHHHHHHHH
Q 040279 231 CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR-GLNPDRFTYNSLMDGYC 309 (626)
Q Consensus 231 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~ 309 (626)
+...+++..+.+++.++....+. +...+. ++.+.+... |...-..++..+-..|-
T Consensus 179 -------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~~~~~~~~~~~~~~~l~~~y~ 234 (906)
T PRK14720 179 -------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVLGHREFTRLVGLLEDLYEPYK 234 (906)
T ss_pred -------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 44455666666666666554221 222222 222222221 11222333444555566
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 040279 310 LVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYC 344 (626)
Q Consensus 310 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (626)
..++++++..+++.+.+.... |.....-++.+|.
T Consensus 235 ~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 235 ALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 666677777777777666432 4444555555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-05 Score=70.32 Aligned_cols=248 Identities=15% Similarity=0.092 Sum_probs=147.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 040279 305 MDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQA 384 (626)
Q Consensus 305 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (626)
++-+.-.|.+..++..-....... .+...-..+.++|...|.+...+.- +... -.|.......+.......++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchh
Confidence 344555677777666554444331 2344444455666666665544322 2221 123333333333333333333
Q ss_pred H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 040279 385 G-YAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK 463 (626)
Q Consensus 385 ~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (626)
+ ...++.+.+.......+......-...|...|++++|++...... +.+....=+..+.+..+++-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 333444555444333343333444456778888888888776522 333344444566777888888888888
Q ss_pred cccCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 040279 464 LPQKGLVPTVVTYSIMIHGLCR----KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER 539 (626)
Q Consensus 464 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (626)
|.+- .+..|.+.|..++.+ .+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..+++.++..
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-- 236 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-- 236 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 8873 356677767776654 34678888888888875 4788888888888888888888888888888871
Q ss_pred CCCCCHHHHHHHHHHHHccCCHhHHH-HHHHHH
Q 040279 540 NLVPDDTTFSIVVDLLAKDEKYHECS-AVSKSS 571 (626)
Q Consensus 540 ~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 571 (626)
-.-+++++..++-+-...|+-.++. +.+.+.
T Consensus 237 -d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 237 -DAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred -cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 1225777777777766777665543 344444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-05 Score=70.46 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=79.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH-HhcCC
Q 040279 130 ENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL-CKEGL 208 (626)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 208 (626)
.++.++++..++..++.+ +.+...|..+...+...|++++|...|++..+.+ +.+...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-------GENAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCC
Confidence 445566666666666654 4566777777777777777777777777777765 55666666666653 55565
Q ss_pred --cchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 209 --VDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 209 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
.++|.+++++..+.+ +-+...+..+...+...|++++|+..|+++++.
T Consensus 124 ~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 124 HMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367777777777664 235566666777777777777777777777665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.8e-06 Score=71.69 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=85.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHH-HhcCC--HHHH
Q 040279 416 NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGL-CRKGK--LEKA 492 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 492 (626)
.++.+++...++...... +.+...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455667777776666554 5677788888888888888888888888877753 23566777777653 56566 4788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+++++..+.+ +.+..++..+...+...|++++|+..|+++++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888764 44566777777788888888888888888876
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.5e-05 Score=81.45 Aligned_cols=125 Identities=12% Similarity=0.071 Sum_probs=76.9
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
+....+.|++++|+.+++...+.. +.+...+..++.++.+.+++++|+..+++....+ +.+......+..++
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~~~~~~~~~a~~l 164 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHH
Confidence 345566666666666666666652 2234455566666666666666666666666655 55556666666666
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
.+.|++++|.++|+++...+ +-+..++..+..++...|+.++|...|+...+.
T Consensus 165 ~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666532 223556666666666666666666666666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.8e-06 Score=68.96 Aligned_cols=107 Identities=9% Similarity=-0.127 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
+......+...|++++|...|+.+.... +.+...|..+..++...|++++|...|++..+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4456667777888888888888877753 3357777888888888888888888888888764 4566777888888888
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCCH-HHHHHHHH
Q 040279 521 NNKTSKVVELLHKMAEPERNLVPDD-TTFSIVVD 553 (626)
Q Consensus 521 ~g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~~ 553 (626)
.|++++|+..|+.+++ +.|+. ..+.....
T Consensus 105 ~g~~~eAi~~~~~Al~----~~p~~~~~~~~~~~ 134 (144)
T PRK15359 105 MGEPGLAREAFQTAIK----MSYADASWSEIRQN 134 (144)
T ss_pred cCCHHHHHHHHHHHHH----hCCCChHHHHHHHH
Confidence 8888888888888877 66753 44434333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-05 Score=82.13 Aligned_cols=144 Identities=14% Similarity=0.055 Sum_probs=121.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHh
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVI 153 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 153 (626)
++..+..|+....+.|.+++|..+++.+.+. .|+....-... +..+.+.+++++|+..+++.+... +.+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~------a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~ 155 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILM------LRGVKRQQGIEAGRAEIELYFSGG-SSSAR 155 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHH------HHHHHHhccHHHHHHHHHHHhhcC-CCCHH
Confidence 6889999999999999999999999999987 78766555443 467889999999999999999885 44677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (626)
....+..++.+.|++++|..+|+++...+ +.+..++..+...+...|+.++|...|+...+.- .+...-|+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 78889999999999999999999999854 6778999999999999999999999999998752 233344444
Q ss_pred H
Q 040279 234 L 234 (626)
Q Consensus 234 l 234 (626)
+
T Consensus 228 ~ 228 (694)
T PRK15179 228 R 228 (694)
T ss_pred H
Confidence 3
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.1e-05 Score=78.16 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=39.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 229 VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 229 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
..+..+..+|-+.|+.+++..+++++++..+. |+.+.|.+...|+.. ++++|..++.+....
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 35555666666666667777777666666533 566666666666666 666666666665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.7e-07 Score=53.95 Aligned_cols=32 Identities=50% Similarity=0.793 Sum_probs=19.5
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 223 GINPAVVVCTTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 223 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-05 Score=73.23 Aligned_cols=147 Identities=17% Similarity=0.162 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC-HhH
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD-VIT 154 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~ 154 (626)
..+.-....+...|++++|+..++.+++. .|+...+..+.. ..+...++.++|.+.++++... .|+ ...
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~------~i~~~~nk~~~A~e~~~kal~l--~P~~~~l 376 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAG------DILLEANKAKEAIERLKKALAL--DPNSPLL 376 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHH------HHHHHcCChHHHHHHHHHHHhc--CCCccHH
Confidence 34444445566777888888888887766 777777777653 5677778888888888887776 444 555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHH
Q 040279 155 YGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTL 234 (626)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (626)
...+..++.+.|++.+|+.+++.....+ +.|+..|..|..+|...|+..++....-+.
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~~~-------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~--------------- 434 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLFND-------PEDPNGWDLLAQAYAELGNRAEALLARAEG--------------- 434 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcC-------CCCchHHHHHHHHHHHhCchHHHHHHHHHH---------------
Confidence 6667778888888888888888777765 677777888888888888777776654443
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
|...|+++.|...+....+.
T Consensus 435 ---~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 ---YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ---HHhCCCHHHHHHHHHHHHHh
Confidence 44567777777777776654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00024 Score=61.66 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=79.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 040279 373 TLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG 452 (626)
Q Consensus 373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 452 (626)
.++-+....|+.+.|...++.+...- +.+..+-..-.--+-..|++++|+++++.+.+.+ |.|..++-.=+...-..|
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 33344445555555555555554431 2222222211222333455666666666555444 444444444444444555
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN---KTSKVVE 529 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~ 529 (626)
+.-+|++-+.+..+. +..|...|..+...|...|++++|.-.++++.-.. |.++..+..+...+.-.| +..-+.+
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555555543 34456666666666666666666666666665532 334444444544433322 3345566
Q ss_pred HHHHhhc
Q 040279 530 LLHKMAE 536 (626)
Q Consensus 530 ~~~~~~~ 536 (626)
+|.+.++
T Consensus 213 yy~~alk 219 (289)
T KOG3060|consen 213 YYERALK 219 (289)
T ss_pred HHHHHHH
Confidence 6666665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.6e-07 Score=52.95 Aligned_cols=32 Identities=38% Similarity=0.775 Sum_probs=15.1
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYM 499 (626)
Q Consensus 468 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (626)
|+.||..+|+.|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-05 Score=66.58 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
.....+...+...|++++|.+.|+.+...+ +.+...|..+..++...|++++|...+++..+.+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444455555555555555555555432 2244555555555555555666665555555542 33444555555555
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 040279 519 LQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~ 536 (626)
...|++++|...++..++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555666666666655555
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0041 Score=64.05 Aligned_cols=498 Identities=15% Similarity=0.113 Sum_probs=250.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhh
Q 040279 44 FLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNK 123 (626)
Q Consensus 44 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l 123 (626)
.+.++.....|+.++|..+++.....++. |..+...+-..|.+.|++++|..+|+++.+. .|+......+.
T Consensus 47 vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lF------ 117 (932)
T KOG2053|consen 47 VLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLF------ 117 (932)
T ss_pred HHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHH------
Confidence 34444444445888888777776555444 7777888888888888888888888888765 66643333333
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CChH-----HHHHHHHHHHhCCCCCCccccccHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRT-GNLS-----VALRLHKKMVSGDYENGLISKTNIFSYS 197 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~-----~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (626)
.+|.+.+++.+-.+.--++-+. ++-+...+=++++...+. ...+ .-+.+-++|.+.-.+.+ +.-.+..-..
T Consensus 118 -mayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~-gk~~s~aE~~ 194 (932)
T KOG2053|consen 118 -MAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK-GKIESEAEII 194 (932)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC-CccchHHHHH
Confidence 3445555554433333333332 233444444455554432 1222 23345556665443222 1111112222
Q ss_pred HHHHHHHhcCCcchHHHHHH-HHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-
Q 040279 198 IIIDSLCKEGLVDKAKELFL-EMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCK- 275 (626)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 275 (626)
.-...+...|.+++|++++. ...+.-..-+...-+.-+..+...++|.+..++-.++...|.. | |......+.+
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~kl 270 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKL 270 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHH
Confidence 23344556677888888873 3333322223344455667777888888888888888776543 2 3332221111
Q ss_pred --c-------------CCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCChhhHH
Q 040279 276 --G-------------GKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL---VGRIDTAREIFLSMHSKGCKHTVVSYN 337 (626)
Q Consensus 276 --~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (626)
. +..+...+..++.... .....|-+-+.++.+ -|+.+++...|-+ +-| +-.++.
T Consensus 271 Le~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg---~kpcc~ 342 (932)
T KOG2053|consen 271 LELLNKEPAEAAHSLSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFG---DKPCCA 342 (932)
T ss_pred HHhcccccchhhhhhhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhC---CCcHhH
Confidence 0 1111111111111111 022233333433333 3566655443322 222 334455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHHcCC-----HHHHHHHHHHHH---hCC----
Q 040279 338 ILINGYCKILNVEEAMSLYRQIISNGVRQTVI-------TYNTLLSGLFQAGQ-----AGYAQKLFDEMK---LYN---- 398 (626)
Q Consensus 338 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~a~~~~~~~~---~~~---- 398 (626)
.=+..|...=..+.-..++....... ++.. .+...+..-...|. .+....++.+.. ++|
T Consensus 343 ~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~ 420 (932)
T KOG2053|consen 343 IDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLS 420 (932)
T ss_pred hhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccc
Confidence 55556666666666666666665431 1111 01111111122231 223333333321 122
Q ss_pred --CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 040279 399 --VEPDLS---------TYNILIDGLCKNNCVQ---EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKL 464 (626)
Q Consensus 399 --~~~~~~---------~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (626)
+-|+.. +.+.+++.+.+.++.. +|+-+++.-.... +.|..+--.++..|.-.|-+..|.++|+.+
T Consensus 421 K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tL 499 (932)
T KOG2053|consen 421 KDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTL 499 (932)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhc
Confidence 222221 2345666777777655 3444444444332 445555566778888888888888888887
Q ss_pred ccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-C
Q 040279 465 PQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNL-V 542 (626)
Q Consensus 465 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~ 542 (626)
.-+.+..|...|. +...+...|++..+...+....+. ...+. .+-..+..+| +.|.+.+..++..-=.+..+.. .
T Consensus 500 dIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~ 576 (932)
T KOG2053|consen 500 DIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQK 576 (932)
T ss_pred chHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHH
Confidence 7666665544443 234455667888888777776653 11122 2333333344 6677766655433222200000 1
Q ss_pred CCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 543 PDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 543 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
--..+-+..++.+...++.++-...++.+
T Consensus 577 ~a~~VE~~~l~ll~~~~~~~q~~~~~~~~ 605 (932)
T KOG2053|consen 577 WACRVENLQLSLLCNADRGTQLLKLLESM 605 (932)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHhcc
Confidence 11223345566667788888877777776
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-05 Score=66.44 Aligned_cols=106 Identities=10% Similarity=0.058 Sum_probs=89.1
Q ss_pred HHHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 040279 460 LFHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPE 538 (626)
Q Consensus 460 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 538 (626)
.++++... .| +......++..+...|++++|.+.++.+.+.+ +.+...+..+...+...|++++|...++..++
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-- 79 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-- 79 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 34455543 33 44566778888999999999999999998864 55778889999999999999999999999987
Q ss_pred CCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 539 RNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 539 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.| +...+..++.++...|++++|.++++++.
T Consensus 80 --~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 80 --LDPDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred --cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556 57888899999999999999999999986
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.1e-05 Score=75.69 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
....++..+...++++.|+.+|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666666778888888888887752 44 44457777777788888888888888653 446666676777788
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++++.|+++.+++++ ..|+ ..+|..|+.+|...|++++|.-.++.++
T Consensus 246 ~k~~~~lAL~iAk~av~----lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE----LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH----hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888888 7774 5688888888888888888888888874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.7e-05 Score=63.41 Aligned_cols=126 Identities=14% Similarity=0.192 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT---VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV--VTFNTL 514 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l 514 (626)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.+....|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 4778888888888887752 222 223344567788888999999999888886522221 244556
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 515 MHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
...+...|++++|+..++.... -......+...+++|.+.|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD----EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC----cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888999999998877543 2234556777888899999999999888875
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00055 Score=65.43 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=79.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 040279 378 LFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNA 457 (626)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 457 (626)
+...|+++.|+..++.+.+.. +.|+.......+.+.+.|+.++|.+.++.+.... |........+.+++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHH
Confidence 344566666666666655541 3344444445556666666666666666666543 22244555566666666666666
Q ss_pred HHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 458 WELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+.++++.... .+-|+..|..|..+|...|+..++.....+. |...|++++|+..+..+.+
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence 6666666554 2335666666666666666655555433332 3445666666666666655
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0001 Score=61.39 Aligned_cols=116 Identities=14% Similarity=0.048 Sum_probs=69.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC--HhHHHHHHHHHHhcCCHH
Q 040279 416 NNCVQEAVKLFHMLEMNKFEFG---IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT--VVTYSIMIHGLCRKGKLE 490 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 490 (626)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.+......|+ ......+..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 566666766676666543 222 22233345566677777777777777776532222 123444566677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 491 KANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
+|+..++..... ......+...+.++.+.|++++|...|+++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777554322 223445556666777777777777777664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.007 Score=60.46 Aligned_cols=212 Identities=11% Similarity=0.043 Sum_probs=137.5
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHH--HH--HHHHHhcCCcchHHHHHHHHhhCCC
Q 040279 149 RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYS--II--IDSLCKEGLVDKAKELFLEMKGRGI 224 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~l--~~~~~~~g~~~~A~~~~~~~~~~~~ 224 (626)
.|.+..|..+.......-.++-|...|-+...-. |........+.. .+ ...-.--|++++|.++|-++-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~---Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA---GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc---chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 6788899988888877777888887776653311 000000000000 00 111222488999999998887652
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHH
Q 040279 225 NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL-GPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNS 303 (626)
Q Consensus 225 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 303 (626)
..|..+.+.|+|-.+.++++.--.. .-..-..+|+.+...++....+++|.+.|..-... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3466778889998888777542110 00112347888889999889999999888764321 24
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 040279 304 LMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQ 383 (626)
Q Consensus 304 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (626)
.+.++.+..++++...+-+.+.+ +....-.+..++.+.|.-++|.+.|-+... + ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHHHHH
Confidence 56777777777776666555543 667778888999999999998887754321 1 245667788888
Q ss_pred HHHHHHHHHHHH
Q 040279 384 AGYAQKLFDEMK 395 (626)
Q Consensus 384 ~~~a~~~~~~~~ 395 (626)
|.+|.++-+...
T Consensus 894 W~~avelaq~~~ 905 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHhcc
Confidence 888888776653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=59.49 Aligned_cols=93 Identities=8% Similarity=-0.071 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVD 553 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~ 553 (626)
....+...+...|++++|.++|+-+...+ +-+..-|-.|..++...|++++|+..|..+.. +.| |+..+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~----L~~ddp~~~~~ag~ 111 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ----IKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCchHHHHHHH
Confidence 33444445555666666666666665542 23344555555566666666666666666655 445 3455666666
Q ss_pred HHHccCCHhHHHHHHHHHH
Q 040279 554 LLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 554 ~~~~~g~~~~A~~~~~~~~ 572 (626)
++...|+.+.|.+.|+.+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00026 Score=68.29 Aligned_cols=123 Identities=20% Similarity=0.153 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 040279 372 NTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKA 451 (626)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (626)
..++..+...++++.|..+++++.+.. |+. ...++..+...++..+|.+++++..... +.+..........+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555556677777777777777653 443 3345666666667777777777666443 44566666666667777
Q ss_pred CCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 452 GRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
++++.|+.+.+++.+. .|+ ..+|..|+.+|...|+++.|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777777777764 344 45777777777777777777777766653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.025 Score=56.73 Aligned_cols=223 Identities=13% Similarity=0.036 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH---HHhhhhhhhhhhhcCC
Q 040279 56 LNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNIL---INCFGNKERGLCVENR 132 (626)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l---l~~~~~l~~~~~~~~~ 132 (626)
+++|.++.++ .|.+..|..++..-...-.++-|...|=+... .|.......+ .+--...+..-.--|+
T Consensus 679 ledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~ 749 (1189)
T KOG2041|consen 679 LEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGE 749 (1189)
T ss_pred hHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcc
Confidence 6677776663 46678898888777766666777666644332 2222111000 0000000011122488
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchH
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKA 212 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 212 (626)
+++|.++|-++-++ ...|..+.+.|++-...++++.--... ....-..+++.+...+.....+++|
T Consensus 750 feeaek~yld~drr---------DLAielr~klgDwfrV~qL~r~g~~d~-----dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGGSDD-----DDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hhHhhhhhhccchh---------hhhHHHHHhhhhHHHHHHHHHccCCCc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877654 234667778888877777765422111 0112244677778888877888888
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 213 KELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
.+.|..-... ...+.++....++++.+.+-+.+. -+....-.+..++.+.|.-++|.+.+-+-
T Consensus 816 ~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~--- 878 (1189)
T KOG2041|consen 816 AKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR--- 878 (1189)
T ss_pred HHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc---
Confidence 8877654321 235566666666666555554442 25556677888888889888888766442
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 293 GLNPDRFTYNSLMDGYCLVGRIDTAREIFLSM 324 (626)
Q Consensus 293 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 324 (626)
+.+ ...+..|...++|.+|.++-++.
T Consensus 879 s~p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 879 SLP------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cCc------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 211 23466777788888887776554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.016 Score=54.05 Aligned_cols=249 Identities=15% Similarity=0.078 Sum_probs=142.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 040279 311 VGRIDTAREIFLSMHSKGCKHTVVS--YNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQ 388 (626)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 388 (626)
.|+++.|.+-|+.|... |.... ...|.-.-.+.|+.+.|..+-+.....- +.-...+...+...+..|+|+.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 45666666666665542 11111 1111111223555666665555554431 222344455566666666666666
Q ss_pred HHHHHHHhCC-CCCCHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 040279 389 KLFDEMKLYN-VEPDLS--TYNILIDGLC---KNNCVQEAVKLFHMLEMNKFEFGIE-IFNCLIDGLCKAGRLDNAWELF 461 (626)
Q Consensus 389 ~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 461 (626)
++.+.-+... +.++.. .-..|+.+-. -..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHH
Confidence 6666544321 222221 1111221111 122345555544444433 33322 2233456788999999999999
Q ss_pred HhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 040279 462 HKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN-GCAP-NVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER 539 (626)
Q Consensus 462 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 539 (626)
+.+-+. .|.+.++.. ..+.+.|+. ++.-+++..+. .++| +..+...+..+....|++..|..--+...+
T Consensus 287 E~aWK~--ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--- 357 (531)
T COG3898 287 ETAWKA--EPHPDIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--- 357 (531)
T ss_pred HHHHhc--CCChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---
Confidence 999886 455555433 334555653 33333333221 1344 456777888888899999999999998888
Q ss_pred CCCCCHHHHHHHHHHHH-ccCCHhHHHHHHHHHHhhc
Q 040279 540 NLVPDDTTFSIVVDLLA-KDEKYHECSAVSKSSYRAC 575 (626)
Q Consensus 540 ~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 575 (626)
..|....|..|.++-. ..|+-.++..++-+.+++.
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 8899999999998865 5699999999999987653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00039 Score=56.65 Aligned_cols=95 Identities=8% Similarity=-0.067 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
..-.+..-+...|++++|.++|+-+.... +-+..-|..|..++-..|++++|+..|......+ +.|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33445555678888999998888887753 2356677888888888899999999999888875 456778888888888
Q ss_pred hcCCHHHHHHHHHHhhc
Q 040279 520 QNNKTSKVVELLHKMAE 536 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~ 536 (626)
..|+.+.|.+.|+.++.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999888877
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.2e-05 Score=58.17 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhH
Q 040279 486 KGKLEKANDFLLYMEKNGCA-PNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHE 563 (626)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 563 (626)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+ ..|+ ......++.++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~----~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK----LDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT----HHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC----CCCCCHHHHHHHHHHHHHhCCHHH
Confidence 46777777777777765311 1344455567777777777777777776 33 3333 3444455777777777777
Q ss_pred HHHHHHHH
Q 040279 564 CSAVSKSS 571 (626)
Q Consensus 564 A~~~~~~~ 571 (626)
|++.++++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 77777653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00022 Score=57.11 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC----HH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN----VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD----DT 546 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~ 546 (626)
++..++..+...|++++|.+.|.++.+.. |+ ...+..+..++.+.|++++|...++.+.. ..|+ ..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~ 77 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK----KYPKSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH----HCCCCCcccH
Confidence 34455556666666666666666666532 22 23445566666666777777777766665 2232 34
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 547 TFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 547 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+..++.++.+.|++++|.+.++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 56666666666777777777776664
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00018 Score=54.84 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHH
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDL 554 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 554 (626)
+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+ ..| +...+..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE----LDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcchhHHHHHHHH
Confidence 4445556666667777777776666542 33345556666666666777777777776665 334 33456666666
Q ss_pred HHccCCHhHHHHHHHHHH
Q 040279 555 LAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 555 ~~~~g~~~~A~~~~~~~~ 572 (626)
+...|++++|...+++..
T Consensus 78 ~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 78 YYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 667777777777766654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.022 Score=54.24 Aligned_cols=454 Identities=13% Similarity=0.156 Sum_probs=233.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 040279 84 AVAKNRHYDAVISFYRKLVSIGLLPDFLTLN-ILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGF 162 (626)
Q Consensus 84 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 162 (626)
.+.+++++.+|..+|.++-+.. ..++..+. .++. ++++++|. .++.+.....+....+. .| ...|..+..+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~--grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L 87 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLG--GRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFKAL 87 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHh--hHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHHHH
Confidence 3557888888888888776431 12222222 2221 23344555 34566666666665554 23 33444444443
Q ss_pred --HhcCChHHHHHHHHHHHhC--CCCCCc------cccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCC----CCCCc
Q 040279 163 --CRTGNLSVALRLHKKMVSG--DYENGL------ISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG----INPAV 228 (626)
Q Consensus 163 --~~~g~~~~A~~~~~~~~~~--~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~ 228 (626)
.+.+.+.+|++.+..-.+. +..+.. ..-+|...-+..++.+...|++.+++.+++++..+= ..-+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 4688888888887765543 110000 001122223456778889999999999999887652 23577
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040279 229 VVCTTLIHGFCCAGNWEEVNGLFIEMLDL---GPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLM 305 (626)
Q Consensus 229 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 305 (626)
.+|+.++-.+.+ ..|-++.+. .+-|+ |..++-.|.+.=.. ++.-.-..+.|.......++
T Consensus 168 d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki~~------~d~~~Y~k~~peeeL~s~im 230 (549)
T PF07079_consen 168 DMYDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIM 230 (549)
T ss_pred HHHHHHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHH
Confidence 778775554433 233333322 12222 33333334322110 11100001223333333333
Q ss_pred HHHHhc--CChHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CChhhHHHHHHHH
Q 040279 306 DGYCLV--GRIDTAREIFLSMHSKGCKHTVV-SYNILINGYCKILNVEEAMSLYRQIISNGVR----QTVITYNTLLSGL 378 (626)
Q Consensus 306 ~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~ 378 (626)
....-. ....--.++++.....-..|+.. ....+...+.+ +.+++..+-+.+...... .-..+|..++...
T Consensus 231 qhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 231 QHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred HHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 222211 11122223333333332233322 12223333322 444444444433322110 1234567777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHH----hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH-
Q 040279 379 FQAGQAGYAQKLFDEMKLYNVEPDLSTYN-------ILIDGLC----KNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID- 446 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 446 (626)
.+.++...|...+.-+... .|+...-. .+.+..+ ..-+...-+.+|+.+...++. .......++.
T Consensus 309 Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~ 385 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFG 385 (549)
T ss_pred HHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHH
Confidence 8888888888777766543 33322111 1112222 112233445555655544321 2222333333
Q ss_pred --HHHHcCC-HHHHHHHHHhcccCCCCCCHhHHHHHHH----HHHh---cCCHHHHHHHHHHHHHCCCCCCH----HHHH
Q 040279 447 --GLCKAGR-LDNAWELFHKLPQKGLVPTVVTYSIMIH----GLCR---KGKLEKANDFLLYMEKNGCAPNV----VTFN 512 (626)
Q Consensus 447 --~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~p~~----~~~~ 512 (626)
-+-+.|. -++|+.+++.+.+-. .-|...-|.+.. +|.+ ...+.+-..+-+-+.+.|++|-. ..-+
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 2344555 788999999888731 223444333222 2221 12344444444555566776643 3445
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 513 TLMHG--FLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 513 ~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.|..+ +...|++.++.-+-.-..+ +.|++.+|..++-++....+++||..++...
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~----iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTK----IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH----hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 55543 4578999999988888888 9999999999999999999999999999998
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.9e-05 Score=65.91 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=83.5
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 040279 446 DGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN-VVTFNTLMHGFLQNNKT 524 (626)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 524 (626)
.-..+.+++.+|+..|.++++.. +.|.+.|..-..+|.+.|.++.|++-.+..+.. .|+ ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34678899999999999999863 346777888899999999999999999999884 455 46999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040279 525 SKVVELLHKMAEPERNLVPDDTTFSI 550 (626)
Q Consensus 525 ~~a~~~~~~~~~~~~~~~p~~~~~~~ 550 (626)
++|++.|+++++ +.|+..+|..
T Consensus 166 ~~A~~aykKaLe----ldP~Ne~~K~ 187 (304)
T KOG0553|consen 166 EEAIEAYKKALE----LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHhhhc----cCCCcHHHHH
Confidence 999999999999 9998877654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00021 Score=54.38 Aligned_cols=94 Identities=19% Similarity=0.154 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|.+.+++..+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555666677777777777665532 2233556666666667777777777777766653 3344566666667777
Q ss_pred cCCHHHHHHHHHHhhc
Q 040279 521 NNKTSKVVELLHKMAE 536 (626)
Q Consensus 521 ~g~~~~a~~~~~~~~~ 536 (626)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777776655
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.017 Score=54.30 Aligned_cols=276 Identities=13% Similarity=0.004 Sum_probs=143.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCC-CcchHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINP-AVVVCTTLIH 236 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~ 236 (626)
....+.+..++..|+..+..+++.. +.+..-|..-+..+...|++++|.--.+.-... +| ......-.-.
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~ 125 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQ 125 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhh
Confidence 3445666677778888888887765 555666666667777777777776655544432 11 1122333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHhhHHHHH-HHHHhcCCh
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL-NPDRFTYNSLM-DGYCLVGRI 314 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll-~~~~~~g~~ 314 (626)
++...++..+|.+.++. ...+ ....++..++....... +|.-.++..+- .++.-.|++
T Consensus 126 c~~a~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred hhhhhHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 44445555555555441 1111 11222233333222211 13333333332 355667888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH-------------HHHHHHHHc
Q 040279 315 DTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYN-------------TLLSGLFQA 381 (626)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~ 381 (626)
++|.++--.+.+.+.. +......-..++.-.++.+.+...|++.+..+ |+...-. .-..-..+.
T Consensus 186 ~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 186 DEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred hhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 8888777776665311 22222222233445677888888888877653 3332211 112233456
Q ss_pred CCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 040279 382 GQAGYAQKLFDEMKLY---NVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAW 458 (626)
Q Consensus 382 ~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 458 (626)
|.+..|.+.|.+.+.. .+.++...|.....+..+.|+.++|+.-.+...... +.-+..+..-..++...++|++|.
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777766542 223344445555555566677777766666555432 111223333334455556666666
Q ss_pred HHHHhccc
Q 040279 459 ELFHKLPQ 466 (626)
Q Consensus 459 ~~~~~~~~ 466 (626)
+-++...+
T Consensus 342 ~d~~~a~q 349 (486)
T KOG0550|consen 342 EDYEKAMQ 349 (486)
T ss_pred HHHHHHHh
Confidence 66666655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00017 Score=64.51 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=85.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCH
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKL 489 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 489 (626)
.-..+.+++.+|+..|...+... +-|...|..-..+|.+.|.++.|++-.+..+.. .|+ ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34667899999999999999876 567888888899999999999999999998874 344 67899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 490 EKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
++|++.|++.++ +.|+..+|..=+.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 999999999998 5777776654433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00081 Score=57.91 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
+..+...+...|++++|...|++..+....+. ...+..++.++.+.|++++|.+.+++..+.. +.+...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34444444444555555555554443211111 2344445555555555555555555555431 22233444444444
Q ss_pred HhcCC--------------HHHHHHHHHHhhc
Q 040279 519 LQNNK--------------TSKVVELLHKMAE 536 (626)
Q Consensus 519 ~~~g~--------------~~~a~~~~~~~~~ 536 (626)
...|+ +++|.++++++..
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 44443 3555555555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.1e-05 Score=45.50 Aligned_cols=33 Identities=48% Similarity=0.746 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPN 262 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 262 (626)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.3e-05 Score=45.38 Aligned_cols=33 Identities=36% Similarity=0.785 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN 507 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 507 (626)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566677777777777777777777776666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00042 Score=67.23 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=78.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNK 523 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 523 (626)
-...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++.+ +.+...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3455667889999999999888753 2357778888888888999999999999888864 4456778888888888999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040279 524 TSKVVELLHKMAEPERNLVPDDTTFSI 550 (626)
Q Consensus 524 ~~~a~~~~~~~~~~~~~~~p~~~~~~~ 550 (626)
+++|+..|+++++ +.|+......
T Consensus 86 ~~eA~~~~~~al~----l~P~~~~~~~ 108 (356)
T PLN03088 86 YQTAKAALEKGAS----LAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHHH----hCCCCHHHHH
Confidence 9999999999888 7776544433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0028 Score=59.51 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=76.2
Q ss_pred HHHHHHHc-CCHHHHHHHHHhcccC----CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----H-HH
Q 040279 444 LIDGLCKA-GRLDNAWELFHKLPQK----GLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN-----V-VT 510 (626)
Q Consensus 444 l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~-~~ 510 (626)
+...|... |++++|++.|++..+. | .+. ..++..++..+.+.|++++|.++|+++.......+ . ..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33455555 6777777777776552 1 111 33566777788888999999999988876532211 1 13
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--HHHHHHHHHHHHc--cCCHhHHHHHHHHH
Q 040279 511 FNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--DTTFSIVVDLLAK--DEKYHECSAVSKSS 571 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 571 (626)
|...+-++...||+..|.+.+++......++..+ ......|+.++.. ...+++|+.-|+++
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 3344556777889999999999887622333333 3445666776654 45566666666665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00054 Score=66.49 Aligned_cols=103 Identities=15% Similarity=0.028 Sum_probs=85.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC
Q 040279 409 LIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK 488 (626)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 488 (626)
....+...|++++|+..|+++.... +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3456677899999999999999776 5678889999999999999999999999998853 2357789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLM 515 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (626)
+++|+..|++..+. .|+...+..++
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 99999999999985 45554444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=66.45 Aligned_cols=274 Identities=14% Similarity=0.120 Sum_probs=157.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHH----CCCC-CCHhHHHH
Q 040279 83 GAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIA----FGVR-PDVITYGT 157 (626)
Q Consensus 83 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~ 157 (626)
.-+++.|+.+..+.+|+.+++.| ...+..+-..|+.++++|.-.+++++|++....=+. .|-+ -...+-..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 44789999999999999999765 334555555577789999999999999987653211 1100 01223334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC--------------------cchHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL--------------------VDKAKELFL 217 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~ 217 (626)
|...+--.|.+++|+..-.+-+....+.+. -......+..+...|...|+ ++.|.+.|.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgD-rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGD-RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhH-HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 556666677888877654443221100000 01123345556666655442 123333333
Q ss_pred HHh----hCCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040279 218 EMK----GRGI-NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLD----LGPR-PNLLTFNVMIDCLCKGGKINEANGLLE 287 (626)
Q Consensus 218 ~~~----~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 287 (626)
+-. +.|- -..-..|..|.+.|.-.|+++.|+...+.-+. -|-. .....+..+..++.-.|+++.|.+.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 211 1110 01124566666777777888888766554332 2211 122356667777777888888887776
Q ss_pred HHHhc----C-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 040279 288 LMIQR----G-LNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSK-----GCKHTVVSYNILINGYCKILNVEEAMSLYR 357 (626)
Q Consensus 288 ~~~~~----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 357 (626)
..... | -.....+..+|.+.|.-..++++|+.++.+-... +..-....+..+..+|...|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 64332 2 1223445566777777777777887776553321 111234567777788888888888877766
Q ss_pred HHHH
Q 040279 358 QIIS 361 (626)
Q Consensus 358 ~~~~ 361 (626)
..++
T Consensus 340 ~hl~ 343 (639)
T KOG1130|consen 340 LHLR 343 (639)
T ss_pred HHHH
Confidence 6544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.2e-05 Score=56.17 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHhHhcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 54 INLNEARYFFGYMTHMQPS-PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
|+++.|+.+|++++...|. ++...+..++.++.+.|++++|+.++++ .+. .|+......++ ++++...|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~------a~~~~~l~~ 73 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLL------ARCLLKLGK 73 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHH------HHHHHHTT-
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHH------HHHHHHhCC
Confidence 5899999999999988774 3555677789999999999999999988 322 44554555554 478899999
Q ss_pred HHHHHHHHHHH
Q 040279 133 IKEATWLFKNM 143 (626)
Q Consensus 133 ~~~A~~~~~~~ 143 (626)
+++|+.+|++.
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999863
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00079 Score=53.90 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCC--CCcchH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGIN--PAVVVC 231 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 231 (626)
++..++..+.+.|++++|.+.|+.+...... .+.....+..+...+.+.|+++.|.+.|+.+...... ....++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 3445555666666666666666666554300 0111334445566666666666666666665543211 112345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
..+..++.+.|++++|...++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 55555566666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.7e-05 Score=44.49 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLP 108 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 108 (626)
.+|+.++.++.+.|+++.|..+|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999887
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.6e-05 Score=44.20 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP 506 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 506 (626)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00082 Score=65.24 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=80.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 040279 364 VRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN--VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIF 441 (626)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 441 (626)
.+.+......++..+....+.+.+..++.+..... ...-..|..+++..|.+.|..++++.+++.=..-|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34455566666666666666777777777766531 1112234457777777777777777777776777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 442 NCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
+.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776655555556655555544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0022 Score=65.05 Aligned_cols=143 Identities=10% Similarity=-0.011 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc--------CCHHHHHHHHHhccc
Q 040279 400 EPDLSTYNILIDGLCK--N---NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKA--------GRLDNAWELFHKLPQ 466 (626)
Q Consensus 400 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 466 (626)
+.+...|...+.+... . ++...|..+|++..+.. |.....+..+..++... +++..+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3444555555544322 1 22445666666665543 22333333333322211 123344444444333
Q ss_pred C-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH
Q 040279 467 K-GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 467 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 545 (626)
. ....+...|.++.......|++++|...++++.+. .|+...|..++..+...|+.++|.+.++++.. +.|..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~----L~P~~ 486 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN----LRPGE 486 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC
Confidence 1 12334566777766666778888888888888885 46777788888888888888888888888877 77765
Q ss_pred HHHH
Q 040279 546 TTFS 549 (626)
Q Consensus 546 ~~~~ 549 (626)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 5543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0056 Score=57.35 Aligned_cols=157 Identities=13% Similarity=-0.009 Sum_probs=85.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---H-------
Q 040279 341 NGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNIL---I------- 410 (626)
Q Consensus 341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~------- 410 (626)
.++...+++++|.+.--.+.+... .+......-...+...++.+.+...|.+.++. .|+...-..+ .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 345567777777777766666421 12222222223444567777777777777764 3443322211 1
Q ss_pred ---HHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHH
Q 040279 411 ---DGLCKNNCVQEAVKLFHMLEMNK---FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGL 483 (626)
Q Consensus 411 ---~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 483 (626)
+-..+.|++..|.+.+.+.+... ..++...|.....+..+.|+.++|+.--++.... .+. ...|..-..++
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~ 331 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCH 331 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHH
Confidence 11245666777777776665432 2344445555555666667777777666666552 111 22233333455
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 040279 484 CRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~ 502 (626)
...++|++|.+-++...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5566677777777666654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.017 Score=48.00 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC-CCHhHHHH
Q 040279 400 EPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV-PTVVTYSI 478 (626)
Q Consensus 400 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ 478 (626)
.|+...-..+..+..+.|+..+|...|++....-+..|......+.++....+++..|...++++.+.... -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 56666666777777788888888888877776555667777777777777778888888777777663210 11333445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
+.+.+...|.+.+|+.-|+..... -|+...-......+.++|+.+++..-+...
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 667777778888888888877774 456555555555666677665554443333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00081 Score=63.16 Aligned_cols=176 Identities=11% Similarity=0.069 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC----CCCCC-
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF----GVRPD- 151 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~- 151 (626)
.|...+..|-..|+|++|...|.+........+. ....-..+...+..+ +..++++|+..+++.... | .++
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G-~~~~ 112 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAG-RFSQ 112 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 3455555666777777777777766432111111 001111111222333 333777777777665432 2 111
Q ss_pred -HhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCC--
Q 040279 152 -VITYGTLINGFCRT-GNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA-- 227 (626)
Q Consensus 152 -~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 227 (626)
...+..+...|... |++++|++.|+++...-...+ ....-...+..+...+.+.|++++|.++|+++.......+
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 22455566667666 788888888887764310000 0111233455666777777777777777777765422211
Q ss_pred ---c-chHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 228 ---V-VVCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 228 ---~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
. ..+...+-++...||...|.+.+++....
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1 12233344556667777777777777654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=56.13 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN--VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFS 549 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~ 549 (626)
...+..++..+...|++++|...|++..+.+..+. ...+..++..+.+.|++++|...++++++ +.| +...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE----LNPKQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcccHHHHH
Confidence 45678888889999999999999999987532222 35788889999999999999999999998 667 456677
Q ss_pred HHHHHHHccCC
Q 040279 550 IVVDLLAKDEK 560 (626)
Q Consensus 550 ~l~~~~~~~g~ 560 (626)
.++.++...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 78888887776
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00081 Score=62.84 Aligned_cols=145 Identities=16% Similarity=0.131 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 040279 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG-LCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDG 447 (626)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (626)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888999999999988543 2233444444444 23356677799999887765 36677888888888
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 448 LCKAGRLDNAWELFHKLPQKGLVPT---VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
+.+.|+.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+.++.+++.+. -|+...+..+..-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 88999999999999998875 3322 247888888888889999999988888874 44433444344333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.017 Score=47.98 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=110.9
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 040279 435 EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN---VVTF 511 (626)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 511 (626)
.|+...--.|..+....|+..+|...|++...--+.-|......+..+....+++.+|...++.+.+.+ |. +.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 567777778889999999999999999998875455678888899999999999999999999998863 32 3355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 512 NTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 512 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
..+.+.+...|++.+|...|+.+++ .-|+...-......+.++|+.++|..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~----~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS----YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH----hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6678899999999999999999998 788888777777888999998888776666543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.013 Score=53.42 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=50.6
Q ss_pred ChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHh--hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040279 37 PETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPIS--SFNLLFGAVAKNRHYDAVISFYRKLVSI 104 (626)
Q Consensus 37 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (626)
++.............| ++++|...|+.++...|.+... +...++.++.+.+++++|+..+++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g--~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDG--NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4444555556666665 9999999999999987764322 2345778889999999999999999977
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=60.86 Aligned_cols=125 Identities=10% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR-KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
|..++....+.+..+.|..+|.++.+.+ ..+...|...+..-.. .++.+.|..+|+...+. ++.+...|...+..+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4444444444444555555555554321 1123333333333222 33444455555555443 3334444555555555
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCCH----HHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVPDD----TTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
..|+.+.|..+|++.+. .-|.. ..|...+..-.+.|+++.+.++.+++
T Consensus 82 ~~~d~~~aR~lfer~i~----~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 82 KLNDINNARALFERAIS----SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HTT-HHHHHHHHHHHCC----TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555554 12221 24455555445555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=64.26 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=66.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQR--GLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNIL 339 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 339 (626)
+......+++.+....+++.+..++-+.... ....-..|..++++.|...|..+.++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555555555555566666666555544 11122334446666666666666666666666666666666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 040279 340 INGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQ 380 (626)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (626)
|+.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666655555444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0015 Score=55.98 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP--TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
..+..+...+...|++++|+..|++.......+ ...+|..+..++...|++++|+..+++..+.. +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555556666666666666665432111 12356666666666677777777666666542 223344444444
Q ss_pred HHH-------hcCCHHHHHHHHH
Q 040279 517 GFL-------QNNKTSKVVELLH 532 (626)
Q Consensus 517 ~~~-------~~g~~~~a~~~~~ 532 (626)
.+. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 444 5556554443333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0013 Score=56.36 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=83.5
Q ss_pred HHHHHHHHHhccc-CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 454 LDNAWELFHKLPQ-KGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP--NVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 454 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
+..+...+..+.+ .+..-....|..++..+...|++++|+..|++.......+ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444432 2212235567888888999999999999999998753222 234788899999999999999999
Q ss_pred HHHhhcCCCCCCCC-HHHHHHHHHHHH-------ccCCHhHHHHHHHHHH
Q 040279 531 LHKMAEPERNLVPD-DTTFSIVVDLLA-------KDEKYHECSAVSKSSY 572 (626)
Q Consensus 531 ~~~~~~~~~~~~p~-~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~ 572 (626)
++++.. +.|+ ...+..++.++. ..|++++|...+++..
T Consensus 95 ~~~Al~----~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 95 YFQALE----RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHH----hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 999998 5664 556667777777 8889887777776653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00025 Score=50.15 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhc
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN-KTSKVVELLHKMAE 536 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 536 (626)
.+|..++..+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.++++++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444444444444444444444444432 223334444444444444 34444444444443
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.03 Score=51.01 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.+.+-|.+.|.+..|..-++.+++...+.+...+.+..++.+|.+.|..++|.++.+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 55667888999999999999988732233335677888889999999999998887765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0053 Score=62.43 Aligned_cols=144 Identities=11% Similarity=0.074 Sum_probs=79.4
Q ss_pred cCCCCCHhhHHHHHHHHHh--c---CChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhh--cCCHHHHHHHHH
Q 040279 69 MQPSPPISSFNLLFGAVAK--N---RHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCV--ENRIKEATWLFK 141 (626)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~--~~~~~~A~~~~~ 141 (626)
..++.+..+|...+++... . ++...|+.+|+++++. .|+.......+..+......+.. ..+...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456688999998887653 2 3367999999999987 78764443333211111111110 112233333333
Q ss_pred HHHHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHh
Q 040279 142 NMIAF-GVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMK 220 (626)
Q Consensus 142 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (626)
+.... ..+.+...+..+.......|++++|...+++++..+ ++...|..+...+...|+.++|.+.+++..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33322 112334455555555555666666666666666654 345566666666666666666666666665
Q ss_pred hC
Q 040279 221 GR 222 (626)
Q Consensus 221 ~~ 222 (626)
..
T Consensus 481 ~L 482 (517)
T PRK10153 481 NL 482 (517)
T ss_pred hc
Confidence 54
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0003 Score=49.71 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccC-CHhHHHHHHHHHH
Q 040279 507 NVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDE-KYHECSAVSKSSY 572 (626)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 572 (626)
+..+|..++..+...|++++|+..|+++++ +.|+ ...+..++.++...| ++++|.+.++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 467889999999999999999999999999 7785 678999999999999 7999999999986
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00042 Score=48.26 Aligned_cols=54 Identities=11% Similarity=0.249 Sum_probs=33.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 515 MHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
...+...|++++|...|+++++ ..| +...+..++.++...|++++|..+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALK----QDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHC----CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455666666666666666666 345 34556666666666666666666666664
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00035 Score=48.67 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=32.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 480 IHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+..+...|++++|.+.|+++++.. +-+...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666543 22444555566666666666666666666655
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00036 Score=49.12 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILI 117 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 117 (626)
|++++|+..|+.++...|. +..++..++.++.+.|++++|..+++++... .|+...+..++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4899999999999998777 8888889999999999999999999999977 67766666554
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0056 Score=55.38 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=43.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCCC-CHHH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN---KTSKVVELLHKMAEPERNLVP-DDTT 547 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~p-~~~~ 547 (626)
|...|..|..+|...|+.+.|..-|.+..+.. ++|...+..+..++..+. ...++..++++++. ..| |...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~----~D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA----LDPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh----cCCccHHH
Confidence 34445455555555555555555554444431 333444444444333211 22444445555544 334 2333
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 548 FSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 548 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
...++..+...|++.+|...++.|++
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 44444444455555555555555444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=60.70 Aligned_cols=268 Identities=17% Similarity=0.163 Sum_probs=147.9
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCccccccHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDV----ITYGTLINGFCRTGNLSVALRLHKKMVS--GDYENGLISKTNIFSYS 197 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~ 197 (626)
+..+|+.|+......+|+..++.| ..|. .+|..|..+|.-.+++++|++++..-+. +.... --.....-.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd---klGEAKssg 99 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD---KLGEAKSSG 99 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc---hhccccccc
Confidence 356889999999999999999987 2243 3467778888888999999997653221 00000 001122223
Q ss_pred HHHHHHHhcCCcchHHHHHHH----HhhCCC-CCCcchHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 040279 198 IIIDSLCKEGLVDKAKELFLE----MKGRGI-NPAVVVCTTLIHGFCCAGN--------------------WEEVNGLFI 252 (626)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~----~~~~~~-~~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~ 252 (626)
.|.+.+.-.|.+++|+-...+ ..+.|- ......+..|.+.|...|+ ++.|.+.|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 455556666777777654332 222221 1123455566666665443 223333333
Q ss_pred HHHH----CCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hcCC-CCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 040279 253 EMLD----LGPR-PNLLTFNVMIDCLCKGGKINEANGLLELMI----QRGL-NPDRFTYNSLMDGYCLVGRIDTAREIFL 322 (626)
Q Consensus 253 ~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 322 (626)
+=++ .|-. ..-.+|..+...|.-.|+++.|+...+.-+ +.|- ......+..+.+++.-.|+++.|.+.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 3221 1100 011244455555556677777776554422 2221 1123455667777777778887777776
Q ss_pred HHHhc----CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 040279 323 SMHSK----GC-KHTVVSYNILINGYCKILNVEEAMSLYRQIISN----G-VRQTVITYNTLLSGLFQAGQAGYAQKLFD 392 (626)
Q Consensus 323 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 392 (626)
..... |- .........+.+.|.-..++++|+.++.+-+.. + ..-....+..|..+|...|..++|....+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 64332 11 123344556667777677777777776653321 0 11133456667777777777777766655
Q ss_pred HHH
Q 040279 393 EMK 395 (626)
Q Consensus 393 ~~~ 395 (626)
..+
T Consensus 340 ~hl 342 (639)
T KOG1130|consen 340 LHL 342 (639)
T ss_pred HHH
Confidence 543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00024 Score=40.66 Aligned_cols=28 Identities=36% Similarity=0.650 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00067 Score=47.74 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=36.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHH
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTF 548 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~ 548 (626)
...|++++|++.|+++.+.. +-+...+..++.+|.+.|++++|.++++++.. ..|+...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~----~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK----QDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG----GGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCHHHH
Confidence 34566666777766666652 33555666666666667777777777766666 55554333
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.006 Score=47.99 Aligned_cols=93 Identities=19% Similarity=0.117 Sum_probs=62.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPD--VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
..+-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|+.+++........ .+.+......+.-+
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~----~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD----DELNAALRVFLALA 84 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHH
Confidence 456677888888888888888775543 345666778888888888888888888765310 01122333334446
Q ss_pred HHhcCCcchHHHHHHHHhh
Q 040279 203 LCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~ 221 (626)
+...|+.++|++.+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6677888888877766554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0096 Score=46.88 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 448 LCKAGRLDNAWELFHKLPQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
+-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444433322 22333344444444444444444444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0033 Score=47.43 Aligned_cols=74 Identities=16% Similarity=0.361 Sum_probs=38.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 040279 375 LSGLFQAGQAGYAQKLFDEMKLYNV-EPDLSTYNILIDGLCKNN--------CVQEAVKLFHMLEMNKFEFGIEIFNCLI 445 (626)
Q Consensus 375 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (626)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.++++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3444444666666666666666666 566666666665544321 1223444455555555555555555555
Q ss_pred HHH
Q 040279 446 DGL 448 (626)
Q Consensus 446 ~~~ 448 (626)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.011 Score=53.60 Aligned_cols=121 Identities=11% Similarity=0.060 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
.++....-++.-+..+|. |...|..|+..|.+.|+++.|..-|.+..+. .|+....-..+. .....-.......
T Consensus 137 ~~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~a---eaL~~~a~~~~ta 210 (287)
T COG4235 137 EMEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLA---EALYYQAGQQMTA 210 (287)
T ss_pred cHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHH---HHHHHhcCCcccH
Confidence 456666667777777776 9999999999999999999999999999876 555544333222 1111112334577
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
++..+|+++++.+ +-|..+...|...+...|++.+|...|+.|++..
T Consensus 211 ~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 211 KARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999999985 5577888889999999999999999999999876
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0037 Score=57.32 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV----VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIV 551 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 551 (626)
|......+.+.|++++|...|+.+++. .|+. ..+..++.+|...|++++|...|+++++...+-......+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444343345567788888888887775 3332 4666777777888888888888888876111111125566667
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++...|++++|.++|+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 777777888888888888775
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00031 Score=40.17 Aligned_cols=29 Identities=34% Similarity=0.697 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNG 503 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (626)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555566666666666666665555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.14 Score=47.96 Aligned_cols=297 Identities=12% Similarity=0.089 Sum_probs=158.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040279 41 LNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGA--VAKNRHYDAVISFYRKLVSIGLLPDFLTLNILIN 118 (626)
Q Consensus 41 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 118 (626)
+..+-..+...|.||-..|++.-.+..+. ...|....-.|+.+ -.-.|+++.|.+-|+.|.. |..+...-+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 33444556666778999999998876533 22244444444433 3468999999999999985 3344444333
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHH--H
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFS--Y 196 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~ 196 (626)
+. .-..-+.|+.+.|.++-++.-..- +.-...+.+++...+..|+++.|+++.+.-..... +.++..- -
T Consensus 159 gL---yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-----ie~~~aeR~r 229 (531)
T COG3898 159 GL---YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-----IEKDVAERSR 229 (531)
T ss_pred HH---HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----hchhhHHHHH
Confidence 21 123346899999999998887653 33456788999999999999999999998765431 1222211 1
Q ss_pred HHHHHHHH---hcCCcchHHHHHHHHhhCCCCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 040279 197 SIIIDSLC---KEGLVDKAKELFLEMKGRGINPAVVV-CTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDC 272 (626)
Q Consensus 197 ~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (626)
..|+.+-. -.-+...|.+.-.+..+. .|+..- -..-...+.+.|+..++-.+++.+-+..+.|++. .+..
T Consensus 230 AvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~ 303 (531)
T COG3898 230 AVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYV 303 (531)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHH
Confidence 11221111 112344444444444332 333322 1223345556666666666666665544444321 1122
Q ss_pred HHhcCCHHHHHHHHHHHHhc-CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCh
Q 040279 273 LCKGGKINEANGLLELMIQR-GLNP-DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK-ILNV 349 (626)
Q Consensus 273 ~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 349 (626)
+.+.|+. ++.-+++..+. .++| +......+..+....|++..|..--+..... .|....|..|.+.-.. .|+-
T Consensus 304 ~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDq 379 (531)
T COG3898 304 RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQ 379 (531)
T ss_pred HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCch
Confidence 2333332 22222222111 1122 2333344445555556655555444443332 3444444444443332 3555
Q ss_pred HHHHHHHHHHHHC
Q 040279 350 EEAMSLYRQIISN 362 (626)
Q Consensus 350 ~~A~~~~~~~~~~ 362 (626)
.++...+-+..+.
T Consensus 380 g~vR~wlAqav~A 392 (531)
T COG3898 380 GKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhcC
Confidence 5555555555543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.26 Score=50.44 Aligned_cols=341 Identities=16% Similarity=0.115 Sum_probs=197.7
Q ss_pred ccccHHHHH-----HHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 040279 189 SKTNIFSYS-----IIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGN--WEEVNGLFIEMLDLGPRP 261 (626)
Q Consensus 189 ~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~ 261 (626)
++.+..-|. .+++-+...+.+..|+++-..+...-.. ...+|.....-+.+..+ -+++.+.+++-++... .
T Consensus 428 IplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~ 505 (829)
T KOG2280|consen 428 IPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-T 505 (829)
T ss_pred ccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-C
Confidence 455544444 4567777888999999988887643212 14566666666666532 2334444444333322 2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQRGLN----PDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYN 337 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (626)
....|..+.+.....|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+..+ .+...+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHH
Confidence 4457788888888899999998887653222111 01122344455566677777777776666554 1222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH-HHH----HhCCCCCCHHHHHHHHHH
Q 040279 338 ILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLF-DEM----KLYNVEPDLSTYNILIDG 412 (626)
Q Consensus 338 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~----~~~~~~~~~~~~~~l~~~ 412 (626)
. ...+...|..+|.+..+.. +.. .+-..|....+...+-.+. +.. ...+..|+ .......
T Consensus 583 ~------~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~ 647 (829)
T KOG2280|consen 583 M------TLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANA 647 (829)
T ss_pred H------HHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHH
Confidence 1 2334566777777766532 111 1222222222222221111 110 01122233 2333344
Q ss_pred HHhcCCH----------HHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHH
Q 040279 413 LCKNNCV----------QEAVKLFHMLEM-NKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIH 481 (626)
Q Consensus 413 ~~~~g~~----------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (626)
+.+.... .+-+++.+.+.. .+......+.+.-+.-+...|+..+|.++-.+..- ||...|-.-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHH
Confidence 4443321 112222233331 12223334455566667788999999999888763 78888888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCH
Q 040279 482 GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKY 561 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 561 (626)
+++..+++++-+++-+... .+.-|.-...+|.+.|+.++|.+++-+... .. ....+|.+.|++
T Consensus 724 aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~----l~-------ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG----LQ-------EKVKAYLRVGDV 786 (829)
T ss_pred HHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC----hH-------HHHHHHHHhccH
Confidence 9999999988776654432 356688888999999999999999988754 11 567788889999
Q ss_pred hHHHHHHHH
Q 040279 562 HECSAVSKS 570 (626)
Q Consensus 562 ~~A~~~~~~ 570 (626)
.+|.+.--+
T Consensus 787 ~eAad~A~~ 795 (829)
T KOG2280|consen 787 KEAADLAAE 795 (829)
T ss_pred HHHHHHHHH
Confidence 998877544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0047 Score=46.67 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDLGP-RPNLLTFNVMIDCLCKGG--------KINEANGLLELMIQRGLNPDRFTYNSLM 305 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 305 (626)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 455555555555444322 1223444455555555555555555554
Q ss_pred HHH
Q 040279 306 DGY 308 (626)
Q Consensus 306 ~~~ 308 (626)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.031 Score=49.54 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=42.1
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL 111 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 111 (626)
.+..........| ++.+|...|+.+....|.. -..+...++.++.+.|+++.|+..+++.++. .|+..
T Consensus 7 ~lY~~a~~~~~~g--~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~ 76 (203)
T PF13525_consen 7 ALYQKALEALQQG--DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSP 76 (203)
T ss_dssp HHHHHHHHHHHCT---HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-T
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCc
Confidence 3444455555555 7888888888887765542 2345666777778888888888888887765 45443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.094 Score=46.33 Aligned_cols=138 Identities=13% Similarity=0.035 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHH-----HHH
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTY-----SIM 479 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l 479 (626)
+.+.++..+.-.|.+.-....++.+++...+.++.....++..-.+.||.+.|..+|++..+..-+.|..+. ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344555555556667777777777776665667777777777777777777777777755442112222222 233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHH
Q 040279 480 IHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTT 547 (626)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 547 (626)
...|.-++++..|...+.++...+ +.|+...+.-.-+..-.|+..+|++.++.|+. ..|.+.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~----~~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ----QDPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc----cCCccch
Confidence 344555677777777777777654 44555556666666667888888888888877 5554433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.052 Score=48.06 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=41.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLT-LNILINCFGNKERGLCVENRIKEATWLFKNMIAF 146 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 146 (626)
+...+...+..+...|++.+|+..|+.+... .|+... -.+.+. ++.++.+.|+++.|...+++.++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~----la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLM----LAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHH----HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445556666777888888888888888765 333222 222221 356777888888888888887765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.21 Score=47.81 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=60.3
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC
Q 040279 68 HMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLP-DFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF 146 (626)
Q Consensus 68 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 146 (626)
+.+|. |..+|..|++.+..+|.+++..+++++|... .| -...|...+ .+-....++.....+|.+.+..
T Consensus 36 kdNPt-nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~-------s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 36 KDNPT-NILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYM-------SGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred hcCch-hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHh-------cchhhhhhHHHHHHHHHHHHhh
Confidence 34344 8899999999999999999999999999843 11 112233222 3445567899999999999887
Q ss_pred CCCCCHhHHHHHHHHHHh
Q 040279 147 GVRPDVITYGTLINGFCR 164 (626)
Q Consensus 147 ~~~~~~~~~~~li~~~~~ 164 (626)
..+...|...+.--.+
T Consensus 106 --~l~ldLW~lYl~YIRr 121 (660)
T COG5107 106 --SLNLDLWMLYLEYIRR 121 (660)
T ss_pred --hccHhHHHHHHHHHHh
Confidence 4456667666655444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.022 Score=56.59 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (626)
.+.+-+-.|...|.+++|.++---- .....|..|.......=+++-|.+.|.+.+..
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclg------------Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl----------- 614 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLG------------VTDTDWRELAMEALEALDFETARKAYIRVRDL----------- 614 (1081)
T ss_pred cccccchhhhhccchhhhhcccccc------------eecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-----------
Confidence 3444455666777777765543211 11223444544444444555555555554432
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 234 LIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLEL 288 (626)
Q Consensus 234 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 288 (626)
.+-+...-++++.+.|-.|+... +...++-.|++.+|-++|.+
T Consensus 615 ---------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ---------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ---------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 12233334566667766666543 44556667788888777755
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.33 Score=48.57 Aligned_cols=186 Identities=11% Similarity=0.019 Sum_probs=115.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
+...|...+......|+.+.+.-+|+...-. +..=...|-..+......|+.+-|..++....+--++..+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4566777788888889999998888887643 222223444445555555888888887777665443333332222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH---HHHHhcccCCCCCCHhHHHHHHHH-----H
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAW---ELFHKLPQKGLVPTVVTYSIMIHG-----L 483 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l~~~-----~ 483 (626)
.+-..|+++.|..+++.+...- +.-...-..-+....+.|+.+.+. .++...... .-+..+...+..- +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHH
Confidence 2344689999999999888664 333334444455666788888777 444444332 1122222222222 3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN 522 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (626)
.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 3457889999999999987 4777778888888766554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.42 Score=49.65 Aligned_cols=181 Identities=14% Similarity=0.137 Sum_probs=121.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYG 156 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 156 (626)
....-+..+.+..-|+-|+.+-+.-. .+..+...+...| +.-+.+.|++++|...|-+.+.. +.| .
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kY---gd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKY---GDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHH---HHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 35566777888888888888776542 3445555555555 35667889999999988887654 222 3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
.++.-|....+...-..+++.+.+.+ -.+...-..|+.+|.+.++.++-.+..+... .|.. ..-....+.
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~g-------la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~ 471 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKG-------LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALE 471 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcc-------cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHH
Confidence 46677777778888888888888887 3444556778999999999988777766554 3311 223456667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELM 289 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 289 (626)
.+.+.+-.++|.-+-.+... +......++ -..+++++|++.+..+
T Consensus 472 Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 472 ILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777777777666555432 233333333 3567888888887765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.43 Score=48.96 Aligned_cols=380 Identities=9% Similarity=0.067 Sum_probs=216.9
Q ss_pred hHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHH--------HCCCCCCHhHHHH-----HHHHHHhcCChHHHHHHHHHH
Q 040279 112 TLNILINCFGNKERGLCVENRIKEATWLFKNMI--------AFGVRPDVITYGT-----LINGFCRTGNLSVALRLHKKM 178 (626)
Q Consensus 112 ~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~ 178 (626)
.-..+|++- +.+.++.+..++++-..+.+++. ..|++.+..-|.. ++.-+...+.+..|+++-+.+
T Consensus 385 ~QK~LL~AA-sfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l 463 (829)
T KOG2280|consen 385 EQKSLLRAA-SFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLL 463 (829)
T ss_pred HHHHHHHHH-hhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHh
Confidence 344455442 46777888888887777666543 3356666555544 467777889999999998887
Q ss_pred HhCCCCCCccccccHHHHHHHHHHHHhcCCc--chHHHHH-HHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 179 VSGDYENGLISKTNIFSYSIIIDSLCKEGLV--DKAKELF-LEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEML 255 (626)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 255 (626)
...- .....+|......+.+..+. +++++.+ +++... . -...+|..+.......|+.+-|..+++.=.
T Consensus 464 ~~p~-------~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~ 534 (829)
T KOG2280|consen 464 NLPE-------SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEP 534 (829)
T ss_pred CCcc-------ccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCC
Confidence 5322 11256777777777776432 2233333 233222 1 345678888888889999999988875432
Q ss_pred HCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 040279 256 DLGPR----PNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKH 331 (626)
Q Consensus 256 ~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (626)
..+.. .+..-+...+.-+.+.|+.+-...++-.+... .+.. ..+....+...|..+|.+...+.
T Consensus 535 ~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s------~l~~~l~~~p~a~~lY~~~~r~~--- 602 (829)
T KOG2280|consen 535 RSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS------SLFMTLRNQPLALSLYRQFMRHQ--- 602 (829)
T ss_pred CccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH------HHHHHHHhchhhhHHHHHHHHhh---
Confidence 22110 11222344455555666666665555555443 0111 11222344566777777766542
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHH-HHC-CCCCChhhHHHHHHHHHHcCCHHH----------HHHHHHHHHh-CC
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQI-ISN-GVRQTVITYNTLLSGLFQAGQAGY----------AQKLFDEMKL-YN 398 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~----------a~~~~~~~~~-~~ 398 (626)
+.. .+-+.|.+..+..++-.+..+- ... -+.+-..........+.+...... -+++.+.+.. .+
T Consensus 603 ~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~ 679 (829)
T KOG2280|consen 603 DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG 679 (829)
T ss_pred chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 1222333333333322221111 000 011111222333344444333111 1122222211 22
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHH
Q 040279 399 VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSI 478 (626)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (626)
..-..-+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+... ++.-|.-
T Consensus 680 ~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P 749 (829)
T KOG2280|consen 680 GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP 749 (829)
T ss_pred cccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence 22223344455556677899999998877665 6788889888999999999998888776654 2455667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
.+.+|.+.|+.++|.+++.+... . .....+|.+.|++.+|.+..-+-.
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHHhc
Confidence 78899999999999998776632 1 156778899999988887665543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.084 Score=50.46 Aligned_cols=34 Identities=6% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchh
Q 040279 547 TFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLG 587 (626)
Q Consensus 547 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~ 587 (626)
.+..++.+..-.|+.++|.+.++++. ...|+.|.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~-------~l~~~~W~ 340 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAF-------KLKPPAWE 340 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-------hcCCcchh
Confidence 34466666667777777777777775 44566663
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0036 Score=44.71 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=28.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 482 GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.|.+.+++++|.++++++.+.+ +.+...+.....++...|++++|.+.++..++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555542 33344445555555555555555555555555
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.28 Score=45.98 Aligned_cols=163 Identities=15% Similarity=0.061 Sum_probs=87.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcC-CHHHHHHHHHHHHHC--------CCCCCH----
Q 040279 86 AKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVEN-RIKEATWLFKNMIAF--------GVRPDV---- 152 (626)
Q Consensus 86 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~--------~~~~~~---- 152 (626)
.++|+.+.|..++.++.......++.....+-..|-..+......+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4567777777777776543212233333444444445566666677 888887777765443 112222
Q ss_pred -hHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCc
Q 040279 153 -ITYGTLINGFCRTGNLS---VALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAV 228 (626)
Q Consensus 153 -~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 228 (626)
.++..++.++...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+.+.+++.+|... +.-..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e 155 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSE 155 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-ccccc
Confidence 24556666676655543 4555555554432 333445555566666677777777777777765 12123
Q ss_pred chHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 040279 229 VVCTTLIHGFCC--AGNWEEVNGLFIEMLD 256 (626)
Q Consensus 229 ~~~~~li~~~~~--~~~~~~a~~~~~~~~~ 256 (626)
..+..++..+.. ......+...+..++.
T Consensus 156 ~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 156 SNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred chHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 344444444321 1223445555555443
|
It is also involved in sporulation []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.22 Score=44.12 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=94.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH-----
Q 040279 265 TFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNIL----- 339 (626)
Q Consensus 265 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 339 (626)
..+.++..+...|.+.-...++.+.++...+.++.....|.....+.||.+.|...|++..+..-+.+....+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 456677777778888888888888888776777888888888888899999999998877765333343333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040279 340 INGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYN 407 (626)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 407 (626)
...|.-.+++..|...+.++.... +.++...|.-.-...-.|+..+|.+.++.+.+. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 234445677777877787777653 224444444333444557788888888888764 34444433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0023 Score=46.47 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=49.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHH
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGL-LPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIA 145 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 145 (626)
..+|+.++..+.+.|++++|+..|++.++..- .++ ....+...+..++..+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35789999999999999999999999875410 121 2223344455567788888888888888887654
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.018 Score=52.85 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNG--CAPNVVTFNTL 514 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l 514 (626)
|...+....+.|++++|...|+.+++.. |+ ...+..++.+|...|++++|...|+.+.+.. -+.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344555666666666555531 22 2344555555666666666666666665431 01112334444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc
Q 040279 515 MHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+.++...|++++|..+|++.++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4555556666666666666655
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.26 Score=43.92 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=58.7
Q ss_pred CChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 040279 36 SPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL 113 (626)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 113 (626)
.|+..++.-.....+.| ++++|...|+.+....|.. ...+.-.++.++-+.++++.|+...++..+.-.......|
T Consensus 32 ~p~~~LY~~g~~~L~~g--n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 32 LPASELYNEGLTELQKG--NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred CCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 35556666666666665 9999999999998876641 3456667778888999999999999998876433333444
Q ss_pred HHHHHh
Q 040279 114 NILINC 119 (626)
Q Consensus 114 ~~ll~~ 119 (626)
...|.+
T Consensus 110 ~~Ylkg 115 (254)
T COG4105 110 AYYLKG 115 (254)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.019 Score=49.46 Aligned_cols=33 Identities=36% Similarity=0.372 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (626)
-+-|++++++|...|+-||..++..++..+.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 345666666666666666666666666666433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.02 Score=47.19 Aligned_cols=86 Identities=17% Similarity=-0.000 Sum_probs=49.0
Q ss_pred HHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 449 CKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
...|++++|..+|.-+...++ -+..-|..|..++-..|++++|+..|......+ .-|+..+-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 355666666666665554322 244455556666666666666666666555443 234444555566666666666666
Q ss_pred HHHHHhhc
Q 040279 529 ELLHKMAE 536 (626)
Q Consensus 529 ~~~~~~~~ 536 (626)
..|+..++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66666655
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.026 Score=48.57 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=56.0
Q ss_pred CHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH
Q 040279 297 DRFTYNSLMDGYCL-----VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITY 371 (626)
Q Consensus 297 ~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 371 (626)
+..+|..+++.|.+ .|..+-....++.|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 55555555555543 35566666666777777777777777777766543 2211 00001100
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040279 372 NTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNN 417 (626)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 417 (626)
.. ....+-+-|++++++|...|+.||..++..+++.+++.+
T Consensus 112 ---F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 112 ---FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 00 112334556667777777777777777777776665544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.73 Score=48.01 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=112.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhh
Q 040279 43 EFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGN 122 (626)
Q Consensus 43 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 122 (626)
.-+...++.. -++-|+.+-+.- ..++..-.......+..+.+.|++++|..-|-+.+.. ++| ..++
T Consensus 339 ~kL~iL~kK~--ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi----- 404 (933)
T KOG2114|consen 339 TKLDILFKKN--LYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI----- 404 (933)
T ss_pred HHHHHHHHhh--hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH-----
Confidence 3445555554 466666665542 1111111234555667778999999999999887632 122 2233
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+... .| .. ..-....+..
T Consensus 405 --~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g------~~--~fd~e~al~I 472 (933)
T KOG2114|consen 405 --KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KG------EW--FFDVETALEI 472 (933)
T ss_pred --HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cc------ce--eeeHHHHHHH
Confidence 3455666777888889999998865 55666789999999999998888777654 22 00 1123455666
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
+.+.+-.++|.-+-..... .......+ +-..+++++|++.+..+
T Consensus 473 lr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7777777777666554433 23333333 34678899999888765
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.45 Score=45.20 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCH
Q 040279 410 IDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKL 489 (626)
Q Consensus 410 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 489 (626)
+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-.++... +-++.-|...+.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 444444555555555544432 34555555555666666666555544322 11334455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 490 EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
.+|..+..++ + +..-+..|.+.|++.+|.+...+.
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 5555554441 1 123344455555555555544443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0068 Score=43.25 Aligned_cols=65 Identities=11% Similarity=0.090 Sum_probs=54.5
Q ss_pred HHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 040279 47 ENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNIL 116 (626)
Q Consensus 47 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 116 (626)
.+.+.+ +++.|..+++.++..+|. ++..|...+..+.+.|++++|...|+++++. .|+......+
T Consensus 4 ~~~~~~--~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~~~ 68 (73)
T PF13371_consen 4 IYLQQE--DYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDARAL 68 (73)
T ss_pred HHHhCC--CHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence 344555 999999999999999776 8889999999999999999999999999987 5665554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.027 Score=53.14 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH-HHHHHHH
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD-TTFSIVV 552 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~ 552 (626)
.+++.+..+|.+.+++.+|++..+..++.+ ++|...+-.-..+|...|+++.|+..|+++++ +.|+. .+-..++
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK----LEPSNKAARAELI 332 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH----hCCCcHHHHHHHH
Confidence 457788889999999999999999999986 77888888889999999999999999999999 88954 4455555
Q ss_pred HHHHccCCHh-HHHHHHHHHHh
Q 040279 553 DLLAKDEKYH-ECSAVSKSSYR 573 (626)
Q Consensus 553 ~~~~~~g~~~-~A~~~~~~~~~ 573 (626)
.+-.+..++. ...++|..|..
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5555544443 44777888753
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.14 Score=42.22 Aligned_cols=87 Identities=11% Similarity=0.008 Sum_probs=64.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040279 413 LCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 492 (626)
+...|++++|..+|+-+...+ +.+..-+..|..++-..+++++|+..|......+. -|+..+.....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 446788888888888776554 44566677777778788888888888877655432 3555566677888888888888
Q ss_pred HHHHHHHHH
Q 040279 493 NDFLLYMEK 501 (626)
Q Consensus 493 ~~~~~~~~~ 501 (626)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888888877
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.37 Score=46.25 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=59.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH---------cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 416 NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK---------AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
.|+.++|+.++..+......+++.++..+...|-. ....++|+..|.+.-+. .||..+=-.++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHc
Confidence 45555555555543333334444555444444321 11256777777766553 24433222222222233
Q ss_pred CCH----HHHHHHH---H-HHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 487 GKL----EKANDFL---L-YMEKNGC---APNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 487 g~~----~~A~~~~---~-~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|.. .+..++- . .+.+.|. ..+.--+.+++.++.-.|++++|.+.+++|.+
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 321 1222222 1 1222332 22333446677888888999999999999987
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.037 Score=46.09 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh-----CCCCCCc
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG-----RGINPAV 228 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 228 (626)
+...++..+...|++++|+.+.+.+...+ |.+...|..+|.+|...|+...|.+.|+.+.. .|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 45567777778888888888888888776 67777888888888888888888888887653 2666654
Q ss_pred ch
Q 040279 229 VV 230 (626)
Q Consensus 229 ~~ 230 (626)
.+
T Consensus 137 ~~ 138 (146)
T PF03704_consen 137 ET 138 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.043 Score=51.84 Aligned_cols=136 Identities=14% Similarity=0.084 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCC--HhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 79 NLLFGAVAKNRHYDAVISFYRKLVSI-----GLLPD--FLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD 151 (626)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~--~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (626)
..-...+.+.|+|..|..-|++++.. +..+. ...-...+.++-+++.++.+.+++..|++..+..+..+ ++|
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N 290 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNN 290 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCc
Confidence 33455778899999999988886542 11111 11112233333456667888888888888888888875 567
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCc-chHHHHHHHHhhC
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLV-DKAKELFLEMKGR 222 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 222 (626)
...+-.-..++...|+++.|+..|+++++.. |.|-.+-+-|+.+-.+.... +...++|..|...
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLE-------PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7788888888888888888888888888876 55655555565555444433 3346666666543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.91 Score=45.57 Aligned_cols=117 Identities=12% Similarity=0.061 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHH-hcCCHH
Q 040279 167 NLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFC-CAGNWE 245 (626)
Q Consensus 167 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~ 245 (626)
+.+.+...+..++..- |.-..-|......-.+.|..+.+.++|++.... ++.+...|...+..+. ..|+.+
T Consensus 60 ~~~~~r~~y~~fL~ky-------Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~ 131 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKY-------PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPE 131 (577)
T ss_pred HHHHHHHHHHHHHhhC-------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHH
Confidence 3344444555554332 222333444444444555555555555555542 3444444444443322 334555
Q ss_pred HHHHHHHHHHHC-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040279 246 EVNGLFIEMLDL-GPR-PNLLTFNVMIDCLCKGGKINEANGLLELMIQ 291 (626)
Q Consensus 246 ~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 291 (626)
...+.|+..... |.. .+...|...+..-..++++.....+++++++
T Consensus 132 ~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 132 TLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 555555554432 110 1223444455544555555555555555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.032 Score=46.44 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhh
Q 040279 510 TFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYRA 574 (626)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 574 (626)
+...++..+...|++++|..+++.++. +.| +...+..++.+|...|+..+|.+.|+++.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~----~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA----LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 344555666677777777777777777 666 4566777777777777777777777776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.095 Score=50.90 Aligned_cols=69 Identities=10% Similarity=0.033 Sum_probs=55.0
Q ss_pred CCCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040279 34 VSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPI--SSFNLLFGAVAKNRHYDAVISFYRKLVSI 104 (626)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (626)
.|.....++.+-..+...| ++++|+..|++.++..|.... .+|+.++.+|...|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lG--ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKG--RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445566777777777766 999999999999988776321 46899999999999999999999999864
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.79 Score=44.13 Aligned_cols=458 Identities=12% Similarity=0.090 Sum_probs=219.7
Q ss_pred cCCCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh
Q 040279 33 AVSSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLT 112 (626)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 112 (626)
.-|..-.++.+++.-+-..+ .+++.++.++++...-|. -..+|...+.+-...++++....+|.+.++..+ +...
T Consensus 37 dNPtnI~S~fqLiq~~~tq~--s~~~~re~yeq~~~pfp~-~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldL 111 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQE--SMDAEREMYEQLSSPFPI-MEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDL 111 (660)
T ss_pred cCchhHHHHHHHHHHHhhhh--hHHHHHHHHHHhcCCCcc-ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhH
Confidence 34555566777887777766 899999999999653222 345788888888888999999999999998744 4555
Q ss_pred HHHHHHhhh---hhhhhhhhcCCHHHHHHHHHHHHH-CCCCC-CHhHHHHHHHHHH---------hcCChHHHHHHHHHH
Q 040279 113 LNILINCFG---NKERGLCVENRIKEATWLFKNMIA-FGVRP-DVITYGTLINGFC---------RTGNLSVALRLHKKM 178 (626)
Q Consensus 113 ~~~ll~~~~---~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~~ 178 (626)
|...|.-.. .++.+ +. -..-.+.|+-... .++.| ....|+..+..+- .+.+++.....+.++
T Consensus 112 W~lYl~YIRr~n~~~tG---q~-r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 112 WMLYLEYIRRVNNLITG---QK-RFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred HHHHHHHHHhhCccccc---ch-hhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 555543221 11111 11 1122233343333 23333 3345555544332 233455667777777
Q ss_pred HhCCCCCCccccccHHHHHHHHHHHHhc---C----CcchHHHHHHHHhh--CCCCC----CcchHHH-----------H
Q 040279 179 VSGDYENGLISKTNIFSYSIIIDSLCKE---G----LVDKAKELFLEMKG--RGINP----AVVVCTT-----------L 234 (626)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g----~~~~A~~~~~~~~~--~~~~~----~~~~~~~-----------l 234 (626)
+...+..-.....|-..|..=++-.... | -+-.|...++++.. .|... +..+++. .
T Consensus 188 l~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNw 267 (660)
T COG5107 188 LQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNW 267 (660)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhH
Confidence 7543100000000111111111111111 1 12345555555432 12211 1112221 1
Q ss_pred HHHHHhcC-----C-H-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040279 235 IHGFCCAG-----N-W-EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDG 307 (626)
Q Consensus 235 i~~~~~~~-----~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 307 (626)
|..-...| + . ....-+++..+.. +.-....|......+...++-+.|+...+.-... .|... ..+...
T Consensus 268 IkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~--~~lse~ 342 (660)
T COG5107 268 IKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLT--MFLSEY 342 (660)
T ss_pred hhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchh--eeHHHH
Confidence 11100000 0 0 0000111111111 1112222333333333444545555444332221 12211 112222
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 040279 308 YCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK---ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQA 384 (626)
Q Consensus 308 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (626)
|...++.+.....|+...+. ...-...+..-+. .|+++...+++-+-.. .-...|...+....+....
T Consensus 343 yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl 413 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGL 413 (660)
T ss_pred HhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhH
Confidence 33333333333333333221 0000000000000 1222222222111111 1234566667777777778
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 040279 385 GYAQKLFDEMKLYN-VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK 463 (626)
Q Consensus 385 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (626)
+.|..+|-++.+.+ +.+++..+++++..++ .|+...|..+|+-=... ++.+....+..+..+...++-..|..+|+.
T Consensus 414 ~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 414 EAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 88888888888877 5667778888887665 57778888888754433 133333445566667778888888888886
Q ss_pred cccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 464 LPQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 464 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
.+.+ +..+ ...|..++.--..-|+...+..+-++|.+. -|...+.......|
T Consensus 492 sv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 492 SVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred hHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 6553 2223 557788887777788888888877777763 44443333333333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.041 Score=49.32 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=66.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-HHHH
Q 040279 41 LNEFLHENCKSGIINLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL-NILI 117 (626)
Q Consensus 41 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~ll 117 (626)
.+.....+.+.| ++.+|.+.|...+...|.. ...++.=|+..+..+|++++|..+|..+.+. .|+.... ..++
T Consensus 144 ~Y~~A~~~~ksg--dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLYKSG--DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCChHHHH
Confidence 555555566666 7888888888888876641 2334555788888888888888888888765 4544333 3333
Q ss_pred HhhhhhhhhhhhcCCHHHHHHHHHHHHHC
Q 040279 118 NCFGNKERGLCVENRIKEATWLFKNMIAF 146 (626)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 146 (626)
. ++....+.|+.++|..+|+++.+.
T Consensus 220 K----lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 K----LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred H----HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3 345666777888888888887776
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.8 Score=43.53 Aligned_cols=108 Identities=21% Similarity=0.237 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 040279 370 TYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLC 449 (626)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (626)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... .-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555667778899888888877774 57888999999999999999887775432 224467888899999
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 450 KAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLL 497 (626)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (626)
+.|+..+|..+..++. + ..-+..|.+.|++.+|.+.-.
T Consensus 249 ~~~~~~eA~~yI~k~~------~----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP------D----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC------h----HHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988832 1 345677889999988877533
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.22 Score=49.93 Aligned_cols=201 Identities=16% Similarity=0.085 Sum_probs=107.7
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHH
Q 040279 352 AMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYN-----ILIDGLCKNNCVQEAVKLF 426 (626)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~ 426 (626)
.+.-++++.+.|-.|+... +...++-.|++.+|.++|.+--..+-. ...|+ -..+-+...|..++-..+.
T Consensus 619 li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~aQE~~~~g~~~eKKmL~ 693 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYAQEFLGSGDPKEKKMLI 693 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 3344556666666566542 334455566777777666554221100 01111 1223334444444443333
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh------cccCCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 427 HMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK------LPQKGL---VPTVVTYSIMIHGLCRKGKLEKANDFLL 497 (626)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (626)
+.-.+. .-+..--......+...|+.++|..+.-+ +.+.+. ..+..+...+..-+.+...+.-|-++|.
T Consensus 694 RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 694 RKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred HHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 221110 00000112233445566666666554321 111111 1234555555555666677778888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHH-----------HHHHHHHHHHccCCHhHHHH
Q 040279 498 YMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDT-----------TFSIVVDLLAKDEKYHECSA 566 (626)
Q Consensus 498 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~ 566 (626)
.|-+ ...++......++|.+|..+.++..+ +.||.. -|...-.+|.++|+-.||.+
T Consensus 772 k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe----~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~ 838 (1081)
T KOG1538|consen 772 KMGD---------LKSLVQLHVETQRWDEAFALAEKHPE----FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQ 838 (1081)
T ss_pred Hhcc---------HHHHhhheeecccchHhHhhhhhCcc----ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHH
Confidence 7754 23456667788999999999988876 555432 24445567888999999999
Q ss_pred HHHHHH
Q 040279 567 VSKSSY 572 (626)
Q Consensus 567 ~~~~~~ 572 (626)
++++.-
T Consensus 839 vLeQLt 844 (1081)
T KOG1538|consen 839 VLEQLT 844 (1081)
T ss_pred HHHHhh
Confidence 998874
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.11 Score=41.83 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=59.1
Q ss_pred ChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 040279 37 PETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSP--PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLN 114 (626)
Q Consensus 37 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 114 (626)
++..+..-.....+.| ++++|.+.|+.+....|.. ...+...++.++.++|++++|+..+++.++.........+.
T Consensus 9 ~~~~ly~~a~~~l~~~--~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKG--NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4455666666666666 9999999999999877652 34567778999999999999999999999874433334444
Q ss_pred HHH
Q 040279 115 ILI 117 (626)
Q Consensus 115 ~ll 117 (626)
..+
T Consensus 87 ~Y~ 89 (142)
T PF13512_consen 87 YYM 89 (142)
T ss_pred HHH
Confidence 443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.51 Score=46.13 Aligned_cols=174 Identities=9% Similarity=-0.020 Sum_probs=108.4
Q ss_pred CCCCH---hhH--HHHHHHHHh-----cCChhHHHHHHHHHH-HCCCCCCHhhHHHHHHhhhhh--hhhh-hhcCCHHHH
Q 040279 71 PSPPI---SSF--NLLFGAVAK-----NRHYDAVISFYRKLV-SIGLLPDFLTLNILINCFGNK--ERGL-CVENRIKEA 136 (626)
Q Consensus 71 ~~~~~---~~~--~~l~~~~~~-----~g~~~~A~~~~~~~~-~~g~~p~~~~~~~ll~~~~~l--~~~~-~~~~~~~~A 136 (626)
++.+. ..| ..++.+... ....+.|..+|.+.. +...+|+-...-..+.-|... ..++ ....+..+|
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 34455 667 666666554 223467888999988 223366654444444333210 1111 134566777
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHH
Q 040279 137 TWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELF 216 (626)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 216 (626)
..+-++..+.+ +.|..+...+..+..-.++++.|...|++....+ |....+|........-.|+.++|.+.+
T Consensus 324 ~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 324 LELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888876 5578888888888888888999999999988876 556666766667777788899999988
Q ss_pred HHHhhCCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 217 LEMKGRGIN-PAVVVCTTLIHGFCCAGNWEEVNGLFIE 253 (626)
Q Consensus 217 ~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 253 (626)
++..+.+.. ....+....+..|+.. ..++|+.++-+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 887665311 1112222233344433 35666665543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.12 Score=40.25 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
|++++|++.|.+.+..-|. ...+||.-.+++.-+|+.++|+.=+++.++..-.-.. +.-.+|...+..|...|+-
T Consensus 57 g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr----tacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR----TACQAFVQRGLLYRLLGND 131 (175)
T ss_pred cchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHHHHhCch
Confidence 5999999999999988766 7889999999999999999999999998865221111 1222333345677888999
Q ss_pred HHHHHHHHHHHHCC
Q 040279 134 KEATWLFKNMIAFG 147 (626)
Q Consensus 134 ~~A~~~~~~~~~~~ 147 (626)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99999999988876
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0058 Score=44.32 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
..+++.+...|...|++++|+..|++.++.....+...+....++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567888999999999999999999887541111110111255677777778888888888887776543
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.31 Score=47.60 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=75.1
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN-VVTFNTLMHGFLQNNKTSKVVELL 531 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 531 (626)
+..+|.+..++..+.+ +-|......+..+....++++.|...|++.... .|| ..+|......+.-.|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556777777777754 336777777777777777888888888888875 344 456666777777788888888888
Q ss_pred HHhhcCCCCCCCCH---HHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 532 HKMAEPERNLVPDD---TTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 532 ~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
+++.+ +.|.. ......++.|...+ +++|.++|-+
T Consensus 396 ~~alr----LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQ----LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHhc----cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 88877 66743 23334444555554 6777776644
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.13 Score=42.33 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN 522 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (626)
.++..+...+.......+++.+...+. .+....+.++..|++.+ ..+.++.+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344444455556666666666555442 34555566666665542 2333333332 112233444566666666
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHcc-CCHhHHHHHHHHHHhhccccccccCCchhhhhhhh
Q 040279 523 KTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKD-EKYHECSAVSKSSYRACLYVTIFQPSSLGSMIGCT 593 (626)
Q Consensus 523 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 593 (626)
.++++..++.++.. +...+..+... ++.+.|.+++++. .+|+.|..++..+
T Consensus 84 l~~~~~~l~~k~~~-----------~~~Al~~~l~~~~d~~~a~~~~~~~---------~~~~lw~~~~~~~ 135 (140)
T smart00299 84 LYEEAVELYKKDGN-----------FKDAIVTLIEHLGNYEKAIEYFVKQ---------NNPELWAEVLKAL 135 (140)
T ss_pred cHHHHHHHHHhhcC-----------HHHHHHHHHHcccCHHHHHHHHHhC---------CCHHHHHHHHHHH
Confidence 66666666666543 22222222222 6666666666653 2555565555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.021 Score=55.25 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=70.8
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV----VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDT 546 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 546 (626)
.+...|+.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++ +. ..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe----ls--n~ 144 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR----DY--NL 144 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hc--ch
Confidence 44778999999999999999999999999985 5664 3589999999999999999999999998 31 11
Q ss_pred HHHHHHH--HHHccCCHhHHHHHHHHHHhhcc
Q 040279 547 TFSIVVD--LLAKDEKYHECSAVSKSSYRACL 576 (626)
Q Consensus 547 ~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 576 (626)
.|..+.. .+..-.+..+..++++.+.+.+.
T Consensus 145 ~f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 145 KFSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hHHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2321111 12223344566667776655443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.31 Score=49.34 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhh------HHHHHHHHH----hcCChhHHHHHHHHHHHCCCC
Q 040279 38 ETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISS------FNLLFGAVA----KNRHYDAVISFYRKLVSIGLL 107 (626)
Q Consensus 38 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~ 107 (626)
|+.+..++....-.| |-+.+++.+.+..+.+.-..+.+ |+..+..+. ...+.+.|..+++.+.+. .
T Consensus 188 Pp~~~kll~~vGF~g--dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y 263 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSG--DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y 263 (468)
T ss_pred CHHHHHHHhhcCcCC--cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C
Confidence 334555666666665 89999999998866443333332 333333333 245668899999999987 8
Q ss_pred CCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCC--C-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 040279 108 PDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFG--V-RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYE 184 (626)
Q Consensus 108 p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 184 (626)
|+...|...- ++.+...|++++|++.|++..... . +.....+--+.-.+.-.++|++|...|..+.+.+
T Consensus 264 P~s~lfl~~~------gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-- 335 (468)
T PF10300_consen 264 PNSALFLFFE------GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-- 335 (468)
T ss_pred CCcHHHHHHH------HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--
Confidence 9988887765 467888999999999999866421 1 1122234445666778899999999999999865
Q ss_pred CCccccccHHHHHHHH-HHHHhcCCc-------chHHHHHHHHhh
Q 040279 185 NGLISKTNIFSYSIII-DSLCKEGLV-------DKAKELFLEMKG 221 (626)
Q Consensus 185 ~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~~ 221 (626)
.-+...|.-+. .++...|+. ++|.++|.+...
T Consensus 336 -----~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 336 -----KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred -----ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33444444443 344556776 666677666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.085 Score=47.36 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN---VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSI 550 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~ 550 (626)
.|+.-+. +.+.|++..|...|...++.. +-+ ...+-+|+.++...|++++|..+|..+.+ .++-.| -++.+..
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k-~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK-DYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH-hCCCCCCChHHHHH
Confidence 4555443 456677888888888888862 222 34566788888889999999888888887 333344 3578888
Q ss_pred HHHHHHccCCHhHHHHHHHHHH
Q 040279 551 VVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 551 l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
|+.+..+.|+.++|...+++..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 8888889999999999988875
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.072 Score=42.46 Aligned_cols=86 Identities=17% Similarity=0.076 Sum_probs=51.4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGD---------YENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
|..++..++.++++.|+.+....+.+..-..+ ..++....|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45678899999999999999999988765433 122233445555555555555555555555555555443
Q ss_pred C-CCCCCcchHHHHHH
Q 040279 222 R-GINPAVVVCTTLIH 236 (626)
Q Consensus 222 ~-~~~~~~~~~~~li~ 236 (626)
. +++.+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 3 33334444444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.4 Score=42.65 Aligned_cols=455 Identities=14% Similarity=0.129 Sum_probs=235.6
Q ss_pred CCHHHHHHHHHHhHhcCCC-CC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhh
Q 040279 54 INLNEARYFFGYMTHMQPS-PP----ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLC 128 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~ 128 (626)
+++.+|..+|.++...--. |. ...-+.+++++... +.+.-........+. .| ...|-.+..+. ...
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L-----~~Y 90 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKAL-----VAY 90 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHH-----HHH
Confidence 5899999999988653221 11 22345566776543 444444444444432 23 23333333321 346
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCC------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHH
Q 040279 129 VENRIKEATWLFKNMIAF--GVRP------------DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIF 194 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (626)
+++.+.+|++.+...... +-.+ |-..-+..+..+...|++.++..+++++...-+... ..-+..
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE--~~w~~d 168 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRE--CEWNSD 168 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhh--hcccHH
Confidence 788999999988877655 2111 111224456777899999999999998876431100 236777
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKGR-GINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCL 273 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (626)
+|+.++-.+.+. .|-++++. ....-+.-| -++-.|.+.= ..++...-..+.|....+..++...
T Consensus 169 ~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyY-emilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 169 MYDRAVLMLSRS--------YFLELKESMSSDLYPDYY-EMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHHHhHH--------HHHHHHHhcccccChHHH-HHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHH
Confidence 888766665443 23333221 111111222 2333332211 1111110011233333333333332
Q ss_pred Hhc--CCHHHHHHHHHHHHhcCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHhc
Q 040279 274 CKG--GKINEANGLLELMIQRGLNPDRF-TYNSLMDGYCLVGRIDTAREIFLSMHSKGCK----HTVVSYNILINGYCKI 346 (626)
Q Consensus 274 ~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 346 (626)
.-. .+..--+++++.....-+.|+-. +...+...+.. +.+++..+.+.+....+. .-..++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 11222233333333333444432 22333333333 455555554444332111 1244567777777778
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHH-------HHHHH----HcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH---H
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTL-------LSGLF----QAGQAGYAQKLFDEMKLYNVEPDLS-TYNILI---D 411 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~---~ 411 (626)
++...|-+.+.-+.-. .|+...-..+ -+..+ ...+..+=+.+|+.....++ |.. ....++ .
T Consensus 312 ~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 312 VQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAK 387 (549)
T ss_pred HhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHH
Confidence 8888888777766653 2333221111 11111 01122233445555554432 221 112222 2
Q ss_pred HHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHH----HHHHH---cCCHHHHHHHHHhcccCCCCCCH----hHHHHH
Q 040279 412 GLCKNNC-VQEAVKLFHMLEMNKFEFGIEIFNCLI----DGLCK---AGRLDNAWELFHKLPQKGLVPTV----VTYSIM 479 (626)
Q Consensus 412 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l 479 (626)
-+-+.|. -++|+.+++.+..-. +-|...-|.+. ..|.. ...+..-..+-+-+.+.|++|-. ..-|.|
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 2334454 788999998887543 33443333222 23322 22344444444445556766543 334444
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040279 480 IHG--LCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSI 550 (626)
Q Consensus 480 ~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 550 (626)
..+ +..+|++.++.-.-..+.+ +.|++.+|..++-+.....++++|..++..+ +|+..++..
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-------P~n~~~~ds 530 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-------PPNERMRDS 530 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-------CCchhhHHH
Confidence 443 4568999999887777777 6899999999999999999999999999875 566666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.1 Score=40.70 Aligned_cols=198 Identities=18% Similarity=0.059 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH-
Q 040279 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLY-NVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID- 446 (626)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 446 (626)
.........+...+....+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 33444444555555555555555554431 112233344444444555555566666665555432221 111111222
Q ss_pred HHHHcCCHHHHHHHHHhcccCCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGL--VPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP-NVVTFNTLMHGFLQNNK 523 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 523 (626)
.+...|+++.|...+++...... ......+......+...++.+.+...+.+..... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 45666666666666666644211 0122233333333556667777777777776642 22 34566666666667777
Q ss_pred HHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 524 TSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 524 ~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
++.+...+..... ..|+ ...+..+...+...|.++++...+++..
T Consensus 218 ~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALE----LDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHh----hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777766 4444 3444455555445666777777776664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.21 Score=39.89 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=38.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 040279 468 GLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN-GCAPNVVTFNTLMHGF 518 (626)
Q Consensus 468 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~ 518 (626)
...|+..+..+++.+|+..|++..|+++.+...+. +++.+...|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35577888888888888888888888888887654 6666777787777643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.35 Score=45.05 Aligned_cols=162 Identities=11% Similarity=0.037 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHhHhcCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 55 NLNEARYFFGYMTHMQP--SPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
+...|+..+...+..-. .....++..+..+..++|.+++++..--..+.. ..+...-.....+|.++.+++.+.-+
T Consensus 21 ~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~--a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 21 QTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT--ARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778777776654321 122346777888888999888876433222211 11112223334455556677777777
Q ss_pred HHHHHHHHHHHHHC-CCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC
Q 040279 133 IKEATWLFKNMIAF-GVRP---DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL 208 (626)
Q Consensus 133 ~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (626)
+.+++.+-..-... |..| .......+..++.-.+.++++++.|+.+.+..-+.+. ......++..|...|.+..+
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHHHHHh
Confidence 77777776665543 1111 1223445677777788889999988887653311111 12334567777777777777
Q ss_pred cchHHHHHHHH
Q 040279 209 VDKAKELFLEM 219 (626)
Q Consensus 209 ~~~A~~~~~~~ 219 (626)
+++|.-...+.
T Consensus 178 ~~Kal~f~~kA 188 (518)
T KOG1941|consen 178 YEKALFFPCKA 188 (518)
T ss_pred hhHHhhhhHhH
Confidence 77776555444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.2 Score=39.90 Aligned_cols=75 Identities=12% Similarity=0.103 Sum_probs=43.7
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRG--INPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLC 274 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (626)
+..-.+.|++++|.+.|+.+.... -+-...+...++-++.+.+++++|+..+++....-+......|...|.+.+
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 334456677777777777776552 111233444556666777777777777777776544433344544444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.2 Score=39.33 Aligned_cols=198 Identities=11% Similarity=0.002 Sum_probs=92.1
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
..+|....++++|...+.+..+. ...+...|. - ...++.|.-+.+++...+ .-+..|..-...|
T Consensus 38 AvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kls--------Evvdl~eKAs~lY 101 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKLS--------EVVDLYEKASELY 101 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHH
Confidence 34566667777777766666532 121222221 1 222344444444444321 2234455556677
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCChhhHHHHHHHHHhcCC
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL---GP--RPNLLTFNVMIDCLCKGGK 278 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~ 278 (626)
..+|.++.|-..+++.-+. ..+.++++|+++|++.... +- ..-...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7778877777777665432 2344566666666665431 10 0111233344455555566
Q ss_pred HHHHHHHHHHHHhcC----CCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChH
Q 040279 279 INEANGLLELMIQRG----LNPDR-FTYNSLMDGYCLVGRIDTAREIFLSMHSKG---CKHTVVSYNILINGYCKILNVE 350 (626)
Q Consensus 279 ~~~a~~~~~~~~~~~----~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 350 (626)
+++|-..+.+-.... --++. ..|...|-.+.-..|+..|.+.++.-.+.+ -.-+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 655544433321110 01111 123333444444556666666666543321 1123344444555442 34444
Q ss_pred HHHH
Q 040279 351 EAMS 354 (626)
Q Consensus 351 ~A~~ 354 (626)
.+..
T Consensus 245 ~~~k 248 (308)
T KOG1585|consen 245 EIKK 248 (308)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.2 Score=39.22 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYC 309 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 309 (626)
.|.....+|....++++|...+.+..+. .+.+...|. ....+++|.-+.+++.+. .--...|.-....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4444555666777777777776666531 121222111 122334444444444443 111233445556677
Q ss_pred hcCChHHHHHHHHHHH
Q 040279 310 LVGRIDTAREIFLSMH 325 (626)
Q Consensus 310 ~~g~~~~a~~~~~~~~ 325 (626)
.+|.++.|-..+++.-
T Consensus 103 E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA 118 (308)
T ss_pred HhCCcchHHHHHHHHH
Confidence 7777766666555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.3 Score=49.47 Aligned_cols=135 Identities=17% Similarity=0.167 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh----cCCcchHHHHHHHHhhCCCCCCcchH
Q 040279 156 GTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK----EGLVDKAKELFLEMKGRGINPAVVVC 231 (626)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (626)
..++....=.||-+.+++.+.+..+.+.-.+.....-.-.|+..+..++. ....+.|.++++.+.++ -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34455555678889999988887664311110001111223333333333 23456677777777765 4555554
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 232 TTL-IHGFCCAGNWEEVNGLFIEMLDLGP---RPNLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 232 ~~l-i~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
... .+.+...|+.++|++.|++...... +.....+-.++-.+.-..++++|...|..+.+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 433 3445566777777777776543111 111222333444455566666666666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.2 Score=40.58 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=85.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
.-.......|++.+|..+|....... +.+...-..++.+|...|+.+.|..++..+...--.........-|.
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34455667888999999998888776 45566777788888889999999988888765421111111111222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcCC
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGL-NPDRFTYNSLMDGYCLVGR 313 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~ 313 (626)
.+.+.....+..++-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+++. .-|...-..++..+...|.
T Consensus 212 ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 212 LLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333333333333333332221 11555556666777777777777766655554421 1234445555555555553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.38 Score=38.83 Aligned_cols=88 Identities=10% Similarity=0.112 Sum_probs=60.9
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCC
Q 040279 71 PSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRP 150 (626)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (626)
|..+...+..-+....+.|+|++|+..|+.+...-.. +..+-..-|. ++.+|.+.+++++|...+++.++.....
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~----l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLD----LAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHH----HHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 4445566666777888999999999999999876322 2223333332 4578999999999999999999985332
Q ss_pred CHhHHHHHHHHHH
Q 040279 151 DVITYGTLINGFC 163 (626)
Q Consensus 151 ~~~~~~~li~~~~ 163 (626)
...-|...+.+++
T Consensus 81 p~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 81 PNVDYAYYMRGLS 93 (142)
T ss_pred CCccHHHHHHHHH
Confidence 2334555555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.7 Score=39.74 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=91.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
.....|++.+|...|....... +-+......+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455677777777777766554 334556667777788888888888888777653111122222233444445455554
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+++...+.. |...-..++..+..-|.-+.+...+++
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45544444442 33556666777777888888888887777776333332 445555666666666654444444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.1 Score=40.14 Aligned_cols=164 Identities=14% Similarity=0.124 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHH
Q 040279 405 TYNILIDGLCKNNCVQ---EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIH 481 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (626)
++..++.+|...+..+ +|..+++.+.... +..+.++..-+..+.+.++.+++.+++.+|+.. +.-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 5566777777766554 4555666665432 334556656667777788889999999998875 2212334444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHH-HHHH-HH--HhcCC------HHHHHHHHHHhhcCCCCCCCCHHH
Q 040279 482 GL---CRKGKLEKANDFLLYMEKNGCAPNVV-TFN-TLMH-GF--LQNNK------TSKVVELLHKMAEPERNLVPDDTT 547 (626)
Q Consensus 482 ~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~-~l~~-~~--~~~g~------~~~a~~~~~~~~~~~~~~~p~~~~ 547 (626)
.+ ... ....|...+..+....+.|... ... .++. .+ .+.++ .+...+++....+ ..+.+.+..+
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~-~~~~~ls~~~ 241 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH-SLGKQLSAEA 241 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH-HhcCCCCHHH
Confidence 43 333 3456666666665544455443 111 1111 11 12222 3344444553322 1112223322
Q ss_pred ---HHHH----HHHHHccCCHhHHHHHHHHHH
Q 040279 548 ---FSIV----VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 548 ---~~~l----~~~~~~~g~~~~A~~~~~~~~ 572 (626)
...+ +....+++++++|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2233 334668999999999999764
|
It is also involved in sporulation []. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.43 E-value=4 Score=42.53 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=67.0
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRGINP---AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKG 276 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (626)
++.+.+.+.+++|+++.+..... .| -...+...|..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 56667788888888887765543 33 2356778888888899999998888888764 566676666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040279 277 GKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL 310 (626)
Q Consensus 277 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 310 (626)
++...... -+.......+...|..++..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 66543322 22222222455677777776665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.35 Score=48.23 Aligned_cols=153 Identities=17% Similarity=0.147 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
|++++.+..+.-.-. |.-+..-.+.++..+.+.|-.+.|+++-..-. .-+... .+.|+++
T Consensus 276 d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rFeLA-----------l~lg~L~ 335 (443)
T PF04053_consen 276 DFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------HRFELA-----------LQLGNLD 335 (443)
T ss_dssp -HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHHHHH-----------HHCT-HH
T ss_pred Chhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHhHHH-----------HhcCCHH
Confidence 799977776521111 22235668889999999999999988764322 233433 3578999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKE 214 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (626)
.|.++.++. .+...|..|.....+.|+++-|.+.|++.. -+..|+-.|...|+.+.-.+
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHHHH
Confidence 998766543 367899999999999999999999999853 35677778888999988888
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 215 LFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
+.+....+| -++....++...|+.++..+++.+.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 888877765 3566667777788888888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.1 Score=39.74 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=55.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 040279 346 ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDL----STYNILIDGLCKNNCVQE 421 (626)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 421 (626)
.|++.+|-..++++++. .|.|...++..-.+|...|+.+.-...++++... ..++. ..-..+..++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44555555555555544 3334444444445555555555555555554432 11222 122222233344555555
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 040279 422 AVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKL 464 (626)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (626)
|.+.-++..+.+ +.|.....+....+...|+..++.++..+-
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555555554443 344455555555555555555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.33 E-value=5.7 Score=43.67 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=53.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhH--HHHHHHHHHhcCC
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVT--YSIMIHGLCRKGK 488 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~ 488 (626)
+.+...+.+++|.-.|+..-+ ....+.+|..+|+|.+|+.+..++... -+... -..|+.-+..+++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 333445555555555543321 122345556666666666666655431 12111 1345555666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
.-+|-++..+.... | ...+..+++...+++|.++.....
T Consensus 1015 h~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred chhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 66666666665542 1 122333445556666666666554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.3 Score=41.39 Aligned_cols=165 Identities=12% Similarity=0.052 Sum_probs=87.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC--CCCC---CHhHHHHH
Q 040279 84 AVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF--GVRP---DVITYGTL 158 (626)
Q Consensus 84 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~l 158 (626)
-+..+.++++|+..|.+.+.+ ..|.... +..++.+..+.+..|.+++++..--..+.. .... --.+|..+
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~--l~~~~~R---f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEK--LSDLMGR---FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHH--HHHHHHH---HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888777653 1121111 223334556677777777765433222111 0011 12344555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCC-----CCCCcchHHH
Q 040279 159 INGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG-----INPAVVVCTT 233 (626)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~ 233 (626)
.+.+-+.-++.+++.+-..-........ -..-.....++..++...+.++++++.|+...+.. .-....++..
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~--~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRA--GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCc--ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 5666666666666666555443321100 01112333445666667777788888777765421 1112356777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 040279 234 LIHGFCCAGNWEEVNGLFIEML 255 (626)
Q Consensus 234 li~~~~~~~~~~~a~~~~~~~~ 255 (626)
|...|.+..|+++|.-...+..
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHH
Confidence 7777777777777766655543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.1 Score=35.34 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+..+.....+|+-+.-.+++..+.+.+ .+++..+..+..+|.+.|+..++.++++++-+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3444445555555555555555555432 45555555555555556665555555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.89 Score=45.45 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=82.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 345 KILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
-.++++++.++.+.-.-. ...+....+.++..+.+.|-++.|+.+-.. ..+ -.+...+.|+++.|.+
T Consensus 273 ~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALE 339 (443)
T ss_dssp HTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHH
T ss_pred HcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHH
Confidence 356666665555411100 001233456666666777777777665322 211 1233345677777766
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 425 LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
+.++ ..+...|..|.+....+|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|
T Consensus 340 ~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 340 IAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 5432 23566777777777777777777777777654 4455556666777766666666666554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 505 APNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
. ++....++.-.|+.++..+++.+.-
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 3444445555666666666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.055 Score=33.79 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 511 FNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+..+...|.+.|++++|.+.++++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.47 Score=37.13 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=52.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--HHHHHHHHHHHHccC
Q 040279 482 GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--DTTFSIVVDLLAKDE 559 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 559 (626)
+....|+.+.|++.|.+.+.. .+.+...|+.-..++.-.|+.++|++-++++++. .|-... ...|..-+..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL-ag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALEL-AGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHh-cCccchHHHHHHHHHHHHHHHhC
Confidence 455667777777777766664 2445666777777777777777777777776661 111111 123444455566677
Q ss_pred CHhHHHHHHHHH
Q 040279 560 KYHECSAVSKSS 571 (626)
Q Consensus 560 ~~~~A~~~~~~~ 571 (626)
+-+.|..-|+.+
T Consensus 130 ~dd~AR~DFe~A 141 (175)
T KOG4555|consen 130 NDDAARADFEAA 141 (175)
T ss_pred chHHHHHhHHHH
Confidence 777777777665
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.3 Score=34.83 Aligned_cols=137 Identities=15% Similarity=0.225 Sum_probs=69.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 346 ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKL 425 (626)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 425 (626)
.|..++..++..+...+ .+..-+|.++--....-+-+-..++++.+-+. .|. ..+|++......
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~C 78 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIEC 78 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHHH
Confidence 56666666666666554 23333444443333333334444444444321 111 122333333333
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 426 FHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
+-.+ ..+.+.+...++....+|+-|.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 79 ~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 79 YAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3211 123445566667777788888888887777642 246777777888888888888888888888877764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.029 Score=32.60 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=28.0
Q ss_pred HHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHH
Q 040279 63 FGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVI 95 (626)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 95 (626)
|+++++..|. ++.+|+.++..|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677777776 8999999999999999999986
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.09 Score=32.81 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHH
Q 040279 153 ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIII 200 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (626)
.++..+...+...|++++|+++|+++++.. |.|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhh
Confidence 357788899999999999999999999876 66676666554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.82 E-value=12 Score=44.69 Aligned_cols=324 Identities=10% Similarity=0.016 Sum_probs=168.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
.+..+-.+.+.+.+|.-.++.-...... .......+..+...|...+++|....+...-.. +...+ .-|-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~----~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKE----KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccch----hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHH
Confidence 4455667889999999999984211100 112234455666699999999998887765222 22233 3444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhH-HHHHHHHHhcCChH
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTY-NSLMDGYCLVGRID 315 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~ 315 (626)
.....|+|..|...|+.+.+.++. ...+++-++......|.++......+-.... ..+....+ +.-+.+-.+.+++|
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchh
Confidence 567889999999999999986433 4667887887777888888877766555443 12222222 23334456778888
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHH--HHHHHhcC--ChHHHHHHHHHHHHC--------CCCCC-hhhHHHHHHHHHHcC
Q 040279 316 TAREIFLSMHSKGCKHTVVSYNIL--INGYCKIL--NVEEAMSLYRQIISN--------GVRQT-VITYNTLLSGLFQAG 382 (626)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~A~~~~~~~~~~--------~~~~~-~~~~~~l~~~~~~~~ 382 (626)
.....+. .. +..+|... .....+.. +.-.-.+..+.+.+. +...+ ...|..++....-..
T Consensus 1536 ~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 7776655 21 33334333 22222221 111111122222211 00000 122233322221111
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHC----C-CCcCHHHHHHHHHHHHHcCCHH
Q 040279 383 QAGYAQKLFDEMK-LYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHM-LEMN----K-FEFGIEIFNCLIDGLCKAGRLD 455 (626)
Q Consensus 383 ~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~----~-~~~~~~~~~~l~~~~~~~g~~~ 455 (626)
- +.-.+.+.... .....-+...|..-+..-....+..+-+--+++ +... + -..-...|....+...++|+++
T Consensus 1609 l-~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1609 L-ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred H-HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 1 00001110000 000000111111111111111111111111111 1111 1 1223567778888888899999
Q ss_pred HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 456 NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG 503 (626)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (626)
.|...+-++.+.+ -+..+-..+......|+-..|+.++++..+..
T Consensus 1688 ~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9988877777654 23445566777888999999999999988653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.29 Score=40.30 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=30.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhhc
Q 040279 483 LCRKGKLEKANDFLLYMEKNGCAPNVVTFNT-LMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
-.+.++.+++..++..+.- ++|....... -.+.+...|++.+|..+++.+.+
T Consensus 20 al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3455666777777766665 3555443322 23455666777777777777655
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.029 Score=32.62 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=21.1
Q ss_pred HHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 040279 531 LHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECS 565 (626)
Q Consensus 531 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 565 (626)
|+++++ +.| +...|..++.+|...|++++|+
T Consensus 2 y~kAie----~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE----LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH----HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455555 566 4667777777777777777765
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.3 Score=35.43 Aligned_cols=125 Identities=9% Similarity=0.012 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHhHhcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC
Q 040279 54 INLNEARYFFGYMTHMQPS-PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR 132 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~ 132 (626)
+..++|+.-|..+.+.|.. ..+-............|+..+|+..|+++-.-...|....-..-+++ .-.+...|.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra----a~lLvD~gs 147 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA----AYLLVDNGS 147 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH----HHHHhcccc
Confidence 3799999999999876643 22334445666778999999999999999876556655522222222 125667899
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
+++.....+.+...+-+.....-..|.-+-.+.|++..|.+.|+.+....
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 99998888887766544445566788888899999999999999998744
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.58 E-value=5.3 Score=39.56 Aligned_cols=162 Identities=16% Similarity=0.214 Sum_probs=89.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 040279 80 LLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLI 159 (626)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 159 (626)
.++.--.+..+...-++.-.++++. .||-.+.-.++ +--......+|.++|++..+.| ...+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL--------AEEeA~Ti~Eae~l~rqAvkAg----E~~lg--- 235 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL--------AEEEASTIVEAEELLRQAVKAG----EASLG--- 235 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc--------ccccccCHHHHHHHHHHHHHHH----HHhhc---
Confidence 3444456677777777777777754 45444433333 1223345778888888876653 11111
Q ss_pred HHH--HhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCC-CCcchHHHHHH
Q 040279 160 NGF--CRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGIN-PAVVVCTTLIH 236 (626)
Q Consensus 160 ~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~ 236 (626)
... ...|. .++....++ ..+-..+-..+..+.-+.|+.++|.+.+.+|.+.... ....+...|+.
T Consensus 236 ~s~~~~~~g~------~~e~~~~Rd------t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie 303 (539)
T PF04184_consen 236 KSQFLQHHGH------FWEAWHRRD------TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIE 303 (539)
T ss_pred hhhhhhcccc------hhhhhhccc------cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHH
Confidence 100 01111 111111211 1222333345666777888888888888888765211 12346677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHH
Q 040279 237 GFCCAGNWEEVNGLFIEMLDLGP-RPNLLTFNVMI 270 (626)
Q Consensus 237 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 270 (626)
++...+.+.++..++.+.-+... +.-..+|+..+
T Consensus 304 ~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 304 ALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 88888888888888888754322 22233565544
|
The molecular function of this protein is uncertain. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=3 Score=36.18 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 264 LTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
.||--+...+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45666666666666666666666666554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=3.6 Score=37.05 Aligned_cols=199 Identities=19% Similarity=0.091 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 040279 334 VSYNILINGYCKILNVEEAMSLYRQIISN-GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID- 411 (626)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 411 (626)
.........+...+++..+...+...... ........+......+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555556666665555555431 122233444444555555555666666666665432222 111122222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC-CHhHHHHHHHHHHhcCC
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKF--EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP-TVVTYSIMIHGLCRKGK 488 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 488 (626)
.+...|+++.|...+........ ......+......+...++.+.+...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56667777777777776644221 1223333334444566777888888887777642 22 35667777777777888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 489 LEKANDFLLYMEKNGCAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
++.+...+...... .|+ ...+..+...+...+..+++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888775 333 44555555555566678888888888877
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.7 Score=40.31 Aligned_cols=187 Identities=12% Similarity=0.095 Sum_probs=117.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHHcCCH
Q 040279 379 FQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI----EIFNCLIDGLCKAGRL 454 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 454 (626)
...|+..+|...++++++. .+.|...+...=.+|...|+.+.-...++++... ..++. .+-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4467888888888888764 4667777777777888889888888888877743 12333 2233344455678899
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN----VVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
++|++.-++..+.+ +.|.-.-.+....+...|+..++.++..+-... .+-. ...|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999998888753 234555567777777888898888876655432 1211 12333444456667888999998
Q ss_pred HHHhhcCCCCCCC-CHHH---HHHHHHHHHccCCHhHHHHHHHHH
Q 040279 531 LHKMAEPERNLVP-DDTT---FSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 531 ~~~~~~~~~~~~p-~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
|..-+- ..+.. |... |.-+-....+...+.+-.++-+.+
T Consensus 270 yD~ei~--k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIW--KRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHH--HHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 887544 22333 3322 222333444555555555444444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.26 Score=39.81 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=24.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 486 KGKLEKANDFLLYMEKNGCAPNVVTF-NTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.++.+++..++..|.- +.|+..-. ..-.+.+...|++.+|..++++..+
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 4555555555555554 24443322 1223344555556666666555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.8 Score=34.92 Aligned_cols=51 Identities=8% Similarity=-0.031 Sum_probs=24.2
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 519 LQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
...|.+++...-++.+.. .+-+-....-..|+-+-.+.|++.+|.++|+.+
T Consensus 143 vD~gsy~dV~srvepLa~--d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAG--DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred hccccHHHHHHHhhhccC--CCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 345555555555554433 111112333444455555555555555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.13 E-value=6.3 Score=39.09 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHH
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE-FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMI 480 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 480 (626)
..+-..+..++-+.|+.++|++.++++.+.... ....+...|+.++...+.+.++..++.+..+...+.+ ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 333345666667788999999999888754322 2345667788888888999998888888765322222 33455433
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.7 Score=34.44 Aligned_cols=43 Identities=9% Similarity=-0.019 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040279 373 TLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN 416 (626)
Q Consensus 373 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (626)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44445555555555555555555443 23444555555555543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.6 Score=34.88 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=6.1
Q ss_pred hcCCHHHHHHHHHHH
Q 040279 240 CAGNWEEVNGLFIEM 254 (626)
Q Consensus 240 ~~~~~~~a~~~~~~~ 254 (626)
..|+|.+|..+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.67 Score=39.38 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=62.0
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPT-----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (626)
-+.+.|++++|..-|.++++. +++. ...|..-..++.+.+.++.|+.-....++.+ +.....+..-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 466778888888888877774 2222 2345555667777788888888777777753 22333444445577777
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCHH
Q 040279 522 NKTSKVVELLHKMAEPERNLVPDDT 546 (626)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~p~~~ 546 (626)
.++++|++-|+++.+ ..|...
T Consensus 182 ek~eealeDyKki~E----~dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE----SDPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHH----hCcchH
Confidence 788888888888877 666543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.80 E-value=4.4 Score=35.67 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=63.9
Q ss_pred HHHHHHHc-CCHHHHHHHHHhccc--CCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HH
Q 040279 444 LIDGLCKA-GRLDNAWELFHKLPQ--KGLVPTV---VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFN---TL 514 (626)
Q Consensus 444 l~~~~~~~-g~~~~A~~~~~~~~~--~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l 514 (626)
+...|... .++++|+..|+..-+ .|-..+. ..+......-+..+++.+|+.+|++.....+..+..-|. .+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444333 556666666666544 1212121 123333334456789999999999998765444433332 12
Q ss_pred ---HHHHHhcCCHHHHHHHHHHhhcCCCCCCCC---HHHH---HHHHHHHH--ccCCHhHHHHHHHHH
Q 040279 515 ---MHGFLQNNKTSKVVELLHKMAEPERNLVPD---DTTF---SIVVDLLA--KDEKYHECSAVSKSS 571 (626)
Q Consensus 515 ---~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~---~~l~~~~~--~~g~~~~A~~~~~~~ 571 (626)
+-++.-..+.-.+...+++..+ +.|+ ..-+ ..|+.+.. ....+.++.+-|..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~----~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsi 262 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQE----LDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSI 262 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHh----cCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcc
Confidence 2223334666667777777766 5563 2222 23333332 123445555555554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.7 Score=37.23 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH--H
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT--VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP-NVVTFN--T 513 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~ 513 (626)
..+..+...|.+.|+.++|.+.|.++.+....+. ...+..+++.....+++..+.....++...-..+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3566777778888888888888888777533333 4456677777778888888888777765431111 121111 1
Q ss_pred H--HHHHHhcCCHHHHHHHHHHhhc
Q 040279 514 L--MHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 514 l--~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
. +-.+...+++.+|.+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1 1234567888888888777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.6 Score=37.48 Aligned_cols=101 Identities=11% Similarity=-0.047 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCC-CHhH
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRP-DVIT 154 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 154 (626)
..+..++..|.+.|+.+.|++.|.++..... +....+.+|-.+++.....+++..+.....+....-... |...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 4788999999999999999999999986533 333344444456678888899999998888776542121 2222
Q ss_pred HHHH----HHHHHhcCChHHHHHHHHHHHhC
Q 040279 155 YGTL----INGFCRTGNLSVALRLHKKMVSG 181 (626)
Q Consensus 155 ~~~l----i~~~~~~g~~~~A~~~~~~~~~~ 181 (626)
.+.+ .-.+...+++..|-+.|-.....
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2211 22334578999999988877543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.1 Score=40.26 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhc----------------CChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKN----------------RHYDAVISFYRKLVSIGLLPDFLTLNILIN 118 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 118 (626)
.++---..+..|.+-|...|..+|+.|+..+-+. .+-+.++.++++|..+|+.||..+-..+++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 4455555677778888888999999999876432 233578999999999999999999999987
Q ss_pred hhh
Q 040279 119 CFG 121 (626)
Q Consensus 119 ~~~ 121 (626)
+|+
T Consensus 167 ~FG 169 (406)
T KOG3941|consen 167 AFG 169 (406)
T ss_pred Hhc
Confidence 653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.18 Score=29.72 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLV 102 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (626)
+|+.|+..+.+.|++++|+.+|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999965
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.1 Score=41.05 Aligned_cols=80 Identities=13% Similarity=0.211 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc---CCCCCCCCHHHHHH
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE---PERNLVPDDTTFSI 550 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~p~~~~~~~ 550 (626)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ ...|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566777777777888888888877764 55677788888888888888888777777644 13567776666555
Q ss_pred HHHH
Q 040279 551 VVDL 554 (626)
Q Consensus 551 l~~~ 554 (626)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.21 Score=29.48 Aligned_cols=26 Identities=4% Similarity=0.140 Sum_probs=21.6
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 547 TFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 547 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
++..|+.+|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999999964
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=1 Score=38.37 Aligned_cols=89 Identities=17% Similarity=0.047 Sum_probs=48.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhc
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFG----IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRK 486 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 486 (626)
-+.+.|++++|..-|......-.+.. ...|..-..++.+.+.++.|+.--.+.++.+ |+ ...+..-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 35556677777776666665432211 1233333445566666666666666665542 22 22333334456666
Q ss_pred CCHHHHHHHHHHHHHC
Q 040279 487 GKLEKANDFLLYMEKN 502 (626)
Q Consensus 487 g~~~~A~~~~~~~~~~ 502 (626)
..+++|++-|..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6667777777666664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.25 Score=28.57 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 511 FNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|..++.+|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.25 Score=30.18 Aligned_cols=29 Identities=7% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhh
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSYRA 574 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 574 (626)
.++..++..|...|++++|.++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888887643
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.45 E-value=1.3 Score=39.88 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=26.5
Q ss_pred ChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 332 TVVSYNILINGYCK-----ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLF 379 (626)
Q Consensus 332 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (626)
|..+|-..+..+.. .+..+-.-..++.|.+-|+..|..+|+.|+..+-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 55555555555443 2344444455556666666666666666666543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.34 Score=27.88 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..+..++.++...|++++|.+.++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467788899999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.36 E-value=16 Score=38.22 Aligned_cols=178 Identities=14% Similarity=0.032 Sum_probs=106.4
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHhc
Q 040279 209 VDKAKELFLEMKGRGINPAVVVCTTLIHG-----FCCAGNWEEVNGLFIEMLD-------LGPRPNLLTFNVMIDCLCKG 276 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 276 (626)
...|.+.++...+.| +...-..+..+ +....+.+.|+..|+...+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888876 34333333333 3356789999999998876 44 334566677777664
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----c
Q 040279 277 G-----KINEANGLLELMIQRGLNPDRFTYNSLMDGYCL-VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK----I 346 (626)
Q Consensus 277 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 346 (626)
. +.+.|..++...-+.|. |+...+...+..... ..+...|.++|......| ....+-.+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence 3 56778888888888763 344433322222222 245678888888888877 33344344444332 3
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN 398 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 398 (626)
.+...|..++.+..+.|.+ ....-...+..+.. ++++.+.-.+..+.+.+
T Consensus 378 r~~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 4678888888888887622 21111222223333 66666666666665544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.30 E-value=16 Score=38.17 Aligned_cols=184 Identities=15% Similarity=0.104 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhh-hhhcCCHHHHHHHHHHHHH-------CCCCCCHhHHHHHHHHH
Q 040279 91 YDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERG-LCVENRIKEATWLFKNMIA-------FGVRPDVITYGTLINGF 162 (626)
Q Consensus 91 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~-~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~ 162 (626)
...|...++...+.|..-.......+ + ..+ +....+.+.|+..|+.+.+ .+ +......+..+|
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~---y---~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGIC---Y---LAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHH---H---hhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 46788888888876432211111111 1 234 6678899999999999977 44 334566777777
Q ss_pred HhcC-----ChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh-cCCcchHHHHHHHHhhCCCCCCcchHHHHHH
Q 040279 163 CRTG-----NLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK-EGLVDKAKELFLEMKGRGINPAVVVCTTLIH 236 (626)
Q Consensus 163 ~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (626)
.+.. +.+.|..++.+....+ .++.......+..... ..+...|.+.|...-+.| .+..+-.+..
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~ 368 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLAL 368 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHH
Confidence 7643 6677999999988876 3444333222222222 245678999999988887 3333333333
Q ss_pred HHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040279 237 GFC----CAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLN 295 (626)
Q Consensus 237 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 295 (626)
+|. ...+.+.|..++++..+.|. |...--...+..+.. +.++.+.-.+..+.+.|.+
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 332 23467888888888888762 222222222333333 6666666666666665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.3 Score=40.61 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHHHH
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLD-----LGPRPNLLTFNVM 269 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 269 (626)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34444444455555555555555554443 33444555555555555555555555544432 3455555444444
Q ss_pred HHH
Q 040279 270 IDC 272 (626)
Q Consensus 270 ~~~ 272 (626)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.3 Score=28.12 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 510 TFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+..+...+...|++++|++.++++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.93 E-value=2.2 Score=42.91 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
+++.|..++..+ | -..-+.++..+.++|-.++|+++- ..|+. -+... .+.|+++
T Consensus 601 d~~~a~~vLp~I----~---k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rFela-----------l~lgrl~ 654 (794)
T KOG0276|consen 601 DLEVADGVLPTI----P---KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-RFELA-----------LKLGRLD 654 (794)
T ss_pred cccccccccccC----c---hhhhhhHHhHhhhccchHhhhhcC-------CChhh-hhhhh-----------hhcCcHH
Confidence 566665554443 1 234555666677777666665542 12322 22222 3467788
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHH
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKE 214 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (626)
.|.++..+.. +..-|..|..+....|++..|.+.|.+... |..|+-.+...|+.+....
T Consensus 655 iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 655 IAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred HHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------------hhhhhhhhhhcCChhHHHH
Confidence 8877766543 566788888888888888888888877543 4456666667777665555
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 215 LFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
+-....+.| ..|....+|...|+++++.+++.+-
T Consensus 714 la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQG------KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 555555544 2233445566778888887777554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.83 E-value=20 Score=38.10 Aligned_cols=59 Identities=12% Similarity=0.114 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCC-------HHHHHHHHHHHHHC
Q 040279 198 IIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGN-------WEEVNGLFIEMLDL 257 (626)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~ 257 (626)
.++-.+.++|++++|.++..+.... .......+...+..|....+ -++...-|+...+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4667788999999999999665543 34455677777777766532 23445555555544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.47 Score=27.35 Aligned_cols=29 Identities=14% Similarity=0.374 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSI 104 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (626)
.+|..++..+...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57888999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.45 E-value=8.4 Score=33.05 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=47.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHc
Q 040279 480 IHGLCRKGKLEKANDFLLYMEKNGCAPNV--VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAK 557 (626)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 557 (626)
...+...|++++|+.-++........-+. .+-..|.+.....|.+++|+..+..... .+. .......-++++..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w--~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccH--HHHHHHHhhhHHHH
Confidence 34455666666666666666543111111 1112334455566667777666666554 111 22234445666666
Q ss_pred cCCHhHHHHHHHHHH
Q 040279 558 DEKYHECSAVSKSSY 572 (626)
Q Consensus 558 ~g~~~~A~~~~~~~~ 572 (626)
.|+.++|..-|++++
T Consensus 172 kg~k~~Ar~ay~kAl 186 (207)
T COG2976 172 KGDKQEARAAYEKAL 186 (207)
T ss_pred cCchHHHHHHHHHHH
Confidence 777777777776665
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.32 E-value=23 Score=37.78 Aligned_cols=434 Identities=12% Similarity=0.060 Sum_probs=215.4
Q ss_pred HHHHHHHHHHH-CCCCCC--HhHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcc
Q 040279 135 EATWLFKNMIA-FGVRPD--VITYGTLINGFC-RTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVD 210 (626)
Q Consensus 135 ~A~~~~~~~~~-~~~~~~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (626)
.|++.++.+.+ ..++|. ..++..++..+. ...+++.|...+++.......++. ...-......++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~-~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL-TDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHHHHHhcCHHH
Confidence 57777777773 334443 334556677776 678999999999988654411100 0111223345677777777766
Q ss_pred hHHHHHHHHhhCCCC----CCcchHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHH--HhcCCHH
Q 040279 211 KAKELFLEMKGRGIN----PAVVVCTTL-IHGFCCAGNWEEVNGLFIEMLDLG---PRPNLLTFNVMIDCL--CKGGKIN 280 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~----~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~ 280 (626)
|...+++..+.--. +-...+..+ +..+...+++..|.+.++.+...- ..|....+..++.+. ...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887654211 112222233 233333479999999998886542 223333444444443 3456567
Q ss_pred HHHHHHHHHHhcCC---------CCCHhhHHHHHHHH--HhcCChHHHHHHHHHHHhc---C-CC---------------
Q 040279 281 EANGLLELMIQRGL---------NPDRFTYNSLMDGY--CLVGRIDTAREIFLSMHSK---G-CK--------------- 330 (626)
Q Consensus 281 ~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~---~-~~--------------- 330 (626)
++.+.++.+..... .|-..++..+++.+ ...|+++.+...++++.+. . -.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 77777776643211 23445666666644 4667777777666555321 0 00
Q ss_pred -----------CChhhH---------HHHHHH--HHhcCChHHHHHHHHH-------HH-HCCCCCCh--------hhHH
Q 040279 331 -----------HTVVSY---------NILING--YCKILNVEEAMSLYRQ-------II-SNGVRQTV--------ITYN 372 (626)
Q Consensus 331 -----------~~~~~~---------~~l~~~--~~~~~~~~~A~~~~~~-------~~-~~~~~~~~--------~~~~ 372 (626)
+....| ..++.+ .+..+..++|.+++++ .. .....+.. ..|.
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 001111 111221 2234444455555544 44 11111111 1121
Q ss_pred HHHH---------HHHHcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHHHHH--HHHhcCCHHHHHHHHH--------
Q 040279 373 TLLS---------GLFQAGQAGYAQKLFDEMKLYNV-EPD-----LSTYNILID--GLCKNNCVQEAVKLFH-------- 427 (626)
Q Consensus 373 ~l~~---------~~~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~g~~~~A~~~~~-------- 427 (626)
..+. ...-.+++..+...++.+....- .|+ ...+...+. .+-..|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 1111 22356889999999998875311 111 122222222 3345799999999997
Q ss_pred HHHHCCCCcCHHHHHHH--HHHHHHc--CCHHH--HHHHHHhcccC-CCCC--CHhHHHHHH-HHHHhc--CCHHHHHHH
Q 040279 428 MLEMNKFEFGIEIFNCL--IDGLCKA--GRLDN--AWELFHKLPQK-GLVP--TVVTYSIMI-HGLCRK--GKLEKANDF 495 (626)
Q Consensus 428 ~~~~~~~~~~~~~~~~l--~~~~~~~--g~~~~--A~~~~~~~~~~-~~~p--~~~~~~~l~-~~~~~~--g~~~~A~~~ 495 (626)
.....+...+..++..+ +-.+... ...++ +.++++.+... .-.| +..++..++ .++... -...++...
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 33344433344433321 1122222 22333 67777766542 1122 233444443 333211 112244444
Q ss_pred HHHHHHC---CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--HHHHH-----HHHHHHHccCCHh
Q 040279 496 LLYMEKN---GCAPNV---VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--DTTFS-----IVVDLLAKDEKYH 562 (626)
Q Consensus 496 ~~~~~~~---~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~-----~l~~~~~~~g~~~ 562 (626)
+.+..+. ....+. .+++.+...+. .|+..+..+........ ..-.|| ...|. .+.+.+...|+.+
T Consensus 517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~-A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ 594 (608)
T PF10345_consen 517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQL-AKKSSDYSDQLWHLVASGMLADSYEVQGDRD 594 (608)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHHHHHHHcCcHH
Confidence 4333221 111121 23344444444 67777655554443320 001233 34453 3334477889999
Q ss_pred HHHHHHHHHH
Q 040279 563 ECSAVSKSSY 572 (626)
Q Consensus 563 ~A~~~~~~~~ 572 (626)
+|....++..
T Consensus 595 ka~~~~~~~~ 604 (608)
T PF10345_consen 595 KAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHH
Confidence 9999888763
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.01 E-value=14 Score=34.83 Aligned_cols=128 Identities=9% Similarity=0.158 Sum_probs=58.0
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhcCC-
Q 040279 209 VDKAKELFLEMKGRGINPAVVVCTTLIHGFCC--AG----NWEEVNGLFIEMLDLGPR---PNLLTFNVMIDCLCKGGK- 278 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~- 278 (626)
+++...+++.|.+.|...+..+|-+....... .. ...+|..+|+.|++..+- ++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666677777766665555443222222 11 235566677777665321 233344444332 2222
Q ss_pred ---HHHHHHHHHHHHhcCCCCCH--hhHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCChhhHHH
Q 040279 279 ---INEANGLLELMIQRGLNPDR--FTYNSLMDGYCLVGR--IDTAREIFLSMHSKGCKHTVVSYNI 338 (626)
Q Consensus 279 ---~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (626)
.+.++.+|+.+.+.|+..+. .....++........ ...+.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 23445555555555544332 122222222111111 2345555555555555544444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.82 E-value=15 Score=34.71 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh--cC----ChHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCC-
Q 040279 279 INEANGLLELMIQRGLNPDRFTYNSLMDGYCL--VG----RIDTAREIFLSMHSKGC---KHTVVSYNILINGYCKILN- 348 (626)
Q Consensus 279 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 348 (626)
+++...+++.+.+.|+..+..+|.+....... .. ....|..+|+.|.+.-. .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455677777777777666665543332222 11 24456677777766522 1223333333322 2222
Q ss_pred ---hHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 040279 349 ---VEEAMSLYRQIISNGVRQTV--ITYNTLLSGLFQAGQ--AGYAQKLFDEMKLYNVEPDLSTYNILI 410 (626)
Q Consensus 349 ---~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 410 (626)
.+.+..+|+.+.+.|...+- .....++........ ...+..+++.+.+.|++.....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34455566666665544332 222222222211111 235556666666666666555554433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.5 Score=36.88 Aligned_cols=78 Identities=6% Similarity=0.044 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC-------HHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHc
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN---NK-------TSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAK 557 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~-------~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 557 (626)
++.|.+.++.....+ +.|...++....++... .. +++|+.=|++++. +.|+ ..++..++.+|..
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~----I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK----INPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH----H-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHH
Confidence 455566666544443 55666665555554433 22 3455556666666 8886 5778888888764
Q ss_pred c----CCHhHHHHHHHHH
Q 040279 558 D----EKYHECSAVSKSS 571 (626)
Q Consensus 558 ~----g~~~~A~~~~~~~ 571 (626)
. .+..+|.++|+++
T Consensus 82 ~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHH---HHHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHH
Confidence 3 3344555555554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.0028 Score=52.66 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 040279 442 NCLIDGLCK 450 (626)
Q Consensus 442 ~~l~~~~~~ 450 (626)
+.++..|++
T Consensus 46 ~~L~~ly~~ 54 (143)
T PF00637_consen 46 TLLLELYIK 54 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 333333333
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.28 E-value=15 Score=33.80 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 040279 56 LNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRK 100 (626)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (626)
...|+++|..++....+ ..+-+.++.++....+...|...+..
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHH
Confidence 46799999988775443 24445677788888887777766554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.20 E-value=2.2 Score=39.67 Aligned_cols=87 Identities=9% Similarity=0.003 Sum_probs=44.6
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTS 525 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 525 (626)
-|.++|.+++|+..|...... .| |..++..-..+|.+.+.+..|+.-....+..+ +.-...|..-+.+-...|...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 455666666666666665553 23 55556566666666666666555555554421 111122333333333345555
Q ss_pred HHHHHHHHhhc
Q 040279 526 KVVELLHKMAE 536 (626)
Q Consensus 526 ~a~~~~~~~~~ 536 (626)
+|.+-++..++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55555555555
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=21 Score=35.22 Aligned_cols=197 Identities=12% Similarity=0.065 Sum_probs=106.4
Q ss_pred CccccccccccccccccccccccccCccccccCCCCh---hhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhH
Q 040279 2 ASRTQFRCLFSSETVSKVKLSSLFKSPRQIAAVSSPE---TQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSF 78 (626)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 78 (626)
|.|.+++|.-+-+..+...--++..+.+-....-+|. ....+.+..+.+..-+.+++.. ....|...--
T Consensus 221 AaR~dVp~vDPt~Lm~dwGQaRaLe~~GlDltHYTP~Fa~~iv~~~fkg~in~~~~~~d~~~--------q~~~~~~~~~ 292 (831)
T PRK15180 221 AARMDIPCVNPTNLMEKWGQKRALEKNGDDLTHYTDMFGDAIVAAIFKGVINNTNHHLDEGR--------QEKQDQIREI 292 (831)
T ss_pred HhcCCCcccCchhhhcccchhhcccCCCCCcccCChHHHHHHHHHHHhcccCCccccccccc--------CcCCcchhHH
Confidence 4568888888777666655555554433332222221 1112222333332111112111 0011122212
Q ss_pred HHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 040279 79 NLLFGAVAKNRHYDAVI-SFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGT 157 (626)
Q Consensus 79 ~~l~~~~~~~g~~~~A~-~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (626)
..-+.--...|+...|- +++..+....-.|+....-+ ..+...|+++.+.+.+...... +.....+...
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~---------~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~ 362 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS---------VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRC 362 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH---------HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHH
Confidence 22233334567777665 44444443322343332222 3456779999999888776543 3445667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCC
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG 223 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 223 (626)
+++...+.|++++|..+-+.|+....+ ++..........-..|-++++.-.++++...+
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~~eie-------~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLSNEIE-------DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhccccC-------ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888999999999999999999876632 23232222233344577888888888877654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.50 E-value=32 Score=36.59 Aligned_cols=71 Identities=6% Similarity=-0.003 Sum_probs=38.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCC
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFG 147 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 147 (626)
...| .++-.+.|.|.+++|.++...... +.......+...+..|..--..-.....-++...-|++..+..
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 3456 466788999999999999955443 2344455666666654321111112223345566666666553
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.16 E-value=4.7 Score=34.84 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=52.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-CCCHHHHHHHHHHHHccCCHh
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNL-VPDDTTFSIVVDLLAKDEKYH 562 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~ 562 (626)
.+.|+ ++|.+.|-++...+.--++.....|.. |....+.++++.++.++.+....- .+|++.+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 677777777776664444444444444 444667788888888777633333 567888888888888888887
Q ss_pred HHH
Q 040279 563 ECS 565 (626)
Q Consensus 563 ~A~ 565 (626)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.08 E-value=23 Score=34.48 Aligned_cols=65 Identities=20% Similarity=0.062 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP---TVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
...++..+...+.+.|+++.|...+.++...+... .+.....-+......|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666677777777777777777666532111 233334445556666777777777666665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.62 Score=26.48 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSI 104 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (626)
+..++.++.+.|++++|+..|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445666777778888888888887765
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.66 E-value=16 Score=31.98 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 040279 242 GNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIF 321 (626)
Q Consensus 242 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 321 (626)
|-+.-|.--|.+.+...+. -+..||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-+. +.-.|++..|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHH
Confidence 3344444444444443222 344677777777777777777777777776643222222222222 23346777777666
Q ss_pred HHHHhc
Q 040279 322 LSMHSK 327 (626)
Q Consensus 322 ~~~~~~ 327 (626)
...-+.
T Consensus 157 ~~fYQ~ 162 (297)
T COG4785 157 LAFYQD 162 (297)
T ss_pred HHHHhc
Confidence 665554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.34 E-value=14 Score=31.09 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=12.4
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCH
Q 040279 254 MLDLGPRPNLLTFNVMIDCLCKGGKI 279 (626)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 279 (626)
+.+.+++|+...+..+++.+.+.|++
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33444444444555555555555443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.92 Score=25.72 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=22.3
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 547 TFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 547 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+..++.++.+.|++++|.+.++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45677888889999999999999986
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.65 E-value=14 Score=30.20 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=7.6
Q ss_pred HhcCCcchHHHHHHHHhh
Q 040279 204 CKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~ 221 (626)
...|++++|..+|+++.+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 334444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.61 E-value=43 Score=35.74 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhHh-cCCCC--CHhhHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcC
Q 040279 56 LNEARYFFGYMTH-MQPSP--PISSFNLLFGAVA-KNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVEN 131 (626)
Q Consensus 56 ~~~A~~~~~~~~~-~~~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~ 131 (626)
..-|++.++-+.. ..++| ...++..++..+. ...+++.|...+++....--.++-.... ..+-..+++.+.+.+
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k--~~~~~ll~~i~~~~~ 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK--FRCQFLLARIYFKTN 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH--HHHHHHHHHHHHhcC
Confidence 3456667776663 22333 3446777787776 7899999999999886543233222211 111112356667666
Q ss_pred CHHHHHHHHHHHHHCCCC----CCHhHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH--
Q 040279 132 RIKEATWLFKNMIAFGVR----PDVITYGTL-INGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC-- 204 (626)
Q Consensus 132 ~~~~A~~~~~~~~~~~~~----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 204 (626)
... |...+++.++.--. +-...+..+ +..+...++...|.+.++.+....... ..+...++..++.+..
T Consensus 115 ~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l 190 (608)
T PF10345_consen 115 PKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHL 190 (608)
T ss_pred HHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHh
Confidence 555 99999887764211 122233333 333334489999999999887643110 1344555555555544
Q ss_pred hcCCcchHHHHHHHHhhCCC---------CCCcchHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 040279 205 KEGLVDKAKELFLEMKGRGI---------NPAVVVCTTLIHGF--CCAGNWEEVNGLFIEML 255 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~ 255 (626)
+.+..+++.+.++++..... .|...+|..++..+ ...|+++.+.+.++++.
T Consensus 191 ~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 191 RRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667778888877743211 23455666666654 46777777776665553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.57 E-value=1.2 Score=25.51 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+|..++.+|...|++++|.+.|+++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788888999999999999999886
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.40 E-value=30 Score=33.73 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEP---DLSTYNILIDGLCKNNCVQEAVKLFHMLEM 431 (626)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (626)
..+|..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666667777777777777777766532111 223333334445556677777777666654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.38 E-value=17 Score=30.73 Aligned_cols=135 Identities=12% Similarity=0.067 Sum_probs=71.7
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHH
Q 040279 137 TWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELF 216 (626)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 216 (626)
.+..+.+.+.+++|+...+..++..+.+.|++.....+++--. ++++...-..|+.. .+....+.++=
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V---------i~DSk~lA~~LLs~---~~~~~~~~Ql~ 81 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV---------IPDSKPLACQLLSL---GNQYPPAYQLG 81 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc---------cCCcHHHHHHHHHh---HccChHHHHHH
Confidence 3455556667778888888888888888888776666655432 22333222222222 12333444444
Q ss_pred HHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040279 217 LEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQ 291 (626)
Q Consensus 217 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 291 (626)
-+|.++ =...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 82 lDMLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 82 LDMLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444432 0113455666666777777777776664322 122233455555555555444444444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.30 E-value=18 Score=31.11 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=62.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTY-----SIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
+...+...|++++|..-++..... |....+ ..|.+.....|.+++|+..++.....++ .......-+..+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 345577889999999888877653 222222 2455677888999999998888776432 222344456688
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 040279 519 LQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~ 536 (626)
...|+.++|+.-|++.+.
T Consensus 170 l~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 170 LAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHcCchHHHHHHHHHHHH
Confidence 899999999999999987
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.24 E-value=0.87 Score=26.13 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 510 TFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555554
|
... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.94 E-value=27 Score=32.72 Aligned_cols=135 Identities=14% Similarity=0.063 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC-CHHHHHHHHHhcccCCCCCCHhHHHHHH
Q 040279 402 DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG-RLDNAWELFHKLPQKGLVPTVVTYSIMI 480 (626)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 480 (626)
+..+-...+.++.+.++ +++...+-.+.+ .++..+-...+.++...+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444555555554 233343333332 123333333333343322 12234444444443 23444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Q 040279 481 HGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDL 554 (626)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 554 (626)
.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. +|...+..+.+ -.||..+-...+++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~----~~~d~~v~~~a~~a 276 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY----KFDDNEIITKAIDK 276 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh----hCCChhHHHHHHHH
Confidence 55555555 34444444444432 1 123445555555553 45555555554 23454444444433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.76 E-value=6.4 Score=29.21 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 385 GYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLE 430 (626)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (626)
-++.+-++.+...++.|++....+.+.+|.+.+++..|.++|+.++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555555556666666666666777777777777777776655
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.7 Score=26.31 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVS 103 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (626)
..+++.|+..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999998864
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.54 E-value=2.2 Score=39.69 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=44.0
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
-++.|+++|.+++|+..|....... +-+.+++..-..+|.+..+|..|..=.+.++..+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd 161 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD 161 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 4567888888888888888877652 3377788888888888888887777666665543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.16 E-value=12 Score=28.09 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 386 YAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+.++.+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455566666666777777777777777777777777777777766432 122225555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.11 E-value=23 Score=32.97 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhH
Q 040279 399 VEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK---FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVT 475 (626)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 475 (626)
.+....+...++..-....+++.+...+-.+.... ..++.. -...++.+ -.-+.++++.++..=++.|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 34444455555555555566777776665554321 011111 11222222 23466677877777777788888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
++.++..+.+.+++.+|..+...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888887777666554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.33 E-value=18 Score=32.22 Aligned_cols=116 Identities=12% Similarity=0.120 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
..++.|+..+.+.+...|. .+..|..-+-.+.+..+|+.+..-..+.++. .||.+--...++ .++.....+
T Consensus 24 k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg------~~~l~s~~~ 94 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLG------QWLLQSKGY 94 (284)
T ss_pred hhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHH------HHHHhhccc
Confidence 3689999999998887655 3455666777888899999999888888876 788888887775 456777889
Q ss_pred HHHHHHHHHHHHC----CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 134 KEATWLFKNMIAF----GVRPDVITYGTLINGFCRTGNLSVALRLHKKM 178 (626)
Q Consensus 134 ~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 178 (626)
+.|+..+.+.... .+.+....+..|..+--+.-...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999999987443 24445556777766655555556666666554
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.12 E-value=44 Score=33.46 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=61.8
Q ss_pred HHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHH
Q 040279 60 RYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSI-GLLPDFLTLNILINCFGNKERGLCVENRIKEATW 138 (626)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~ 138 (626)
..+|+.+... ...|+..|...+..+-+.+.+.+.-.+|.+|+.. +..|+...+.+. .-|...-+++.|..
T Consensus 91 v~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~--------wefe~n~ni~saRa 161 (568)
T KOG2396|consen 91 VFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK--------WEFEINLNIESARA 161 (568)
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh--------hHHhhccchHHHHH
Confidence 3445555444 3349999999999988999999999999999865 334444444332 34555666999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHH
Q 040279 139 LFKNMIAFGVRPDVITYGTLI 159 (626)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~li 159 (626)
+|.+.++.+ +.++..|....
T Consensus 162 lflrgLR~n-pdsp~Lw~eyf 181 (568)
T KOG2396|consen 162 LFLRGLRFN-PDSPKLWKEYF 181 (568)
T ss_pred HHHHHhhcC-CCChHHHHHHH
Confidence 999998874 33444444433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.10 E-value=6.3 Score=36.38 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 382 GQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLE 430 (626)
Q Consensus 382 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (626)
-++++++.++..=...|+-||..+...+++.+.+.+++.+|..+.-.|.
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3445555555555555666666666666666666666655555554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.61 E-value=74 Score=35.68 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 040279 264 LTFNVMIDCLCKGG--KINEANGLLELMIQ 291 (626)
Q Consensus 264 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 291 (626)
.....++..|.+.+ .++.++........
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34445666666665 55666655555543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.20 E-value=12 Score=32.50 Aligned_cols=73 Identities=15% Similarity=0.032 Sum_probs=40.1
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN---GCAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
+.|.+.|-.+...+.--++.....|+..|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555444444555555554444 34566666666665543 22455666666666666666666553
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.06 E-value=16 Score=27.55 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=20.6
Q ss_pred HHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 457 AWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 457 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++.+..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.39 E-value=8 Score=34.27 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=55.6
Q ss_pred HHHcCCHHHHHHHHHhcccCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHH
Q 040279 448 LCKAGRLDNAWELFHKLPQKGLVPTV-VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVV-TFNTLMHGFLQNNKTS 525 (626)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~ 525 (626)
|.....++.|+..|.+.+.. .|+. .-|..-+.++.+..+++.+.+--.+..+ +.||.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 33444556666655555542 3444 3334455555556666666555555555 344443 2233334455555566
Q ss_pred HHHHHHHHhhcC--CCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 526 KVVELLHKMAEP--ERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 526 ~a~~~~~~~~~~--~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
+|+..+.++.+. ...++|.......|..+=.+.=...+..++.+.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 666666555321 122333344444444433333333344444444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.94 E-value=1.6 Score=23.27 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=13.8
Q ss_pred HHHHHHHHHccCCHhHHHHHHH
Q 040279 548 FSIVVDLLAKDEKYHECSAVSK 569 (626)
Q Consensus 548 ~~~l~~~~~~~g~~~~A~~~~~ 569 (626)
...++.++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455666666677777666654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.61 E-value=54 Score=32.55 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=84.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 040279 159 INGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGF 238 (626)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (626)
|.-....|++-.|-+-+...++.. +.++.........+...|+++.+.+.+....+. +.....+...++...
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhh
Confidence 444456777777766555555543 333333344445566779999998888766543 233456777888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040279 239 CCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLN 295 (626)
Q Consensus 239 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 295 (626)
.+.|++++|...-.-|+...++ +........-..-..|-++++...|+++...+.+
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8899999999998888876665 4444333333444567788888888888776533
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.13 E-value=3.1 Score=25.79 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 040279 80 LLFGAVAKNRHYDAVISFYRKLVSIG 105 (626)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~g 105 (626)
.|+.+|...|+.+.|+.++++++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46788888888888888888888654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.87 E-value=9.6 Score=28.33 Aligned_cols=49 Identities=6% Similarity=-0.041 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
+.-+..+-++.+......|++.+..+.+.+|.+.+++..|.++|+-+..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555555556666666666666666666666666666665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.83 E-value=40 Score=30.58 Aligned_cols=156 Identities=16% Similarity=0.217 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCH
Q 040279 371 YNTLLSGLFQAGQAGYAQKLFDEMKLY-----NV------EPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMN-KFEFGI 438 (626)
Q Consensus 371 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 438 (626)
-..+...|...+.+.+..++++++... |- ..-...|..-|+.|....+-.+-..++++.... .--|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345666666667777777776666431 10 111345666777777777777777777655422 112344
Q ss_pred HHHHHHH----HHHHHcCCHHHHHH-HHHh---cccCCCCCCHhH---HHHHHHHHHhcC----CHHHHHHHHHHHHHCC
Q 040279 439 EIFNCLI----DGLCKAGRLDNAWE-LFHK---LPQKGLVPTVVT---YSIMIHGLCRKG----KLEKANDFLLYMEKNG 503 (626)
Q Consensus 439 ~~~~~l~----~~~~~~g~~~~A~~-~~~~---~~~~~~~p~~~~---~~~l~~~~~~~g----~~~~A~~~~~~~~~~~ 503 (626)
.+...+- .+..+.|++++|-. +|+. .-+.|- |...+ |..|...+.+.| +..+|.. ..
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs-pRRttCLKYLVLANMLmkS~iNPFDsQEAKP-------yK 299 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS-PRRTTCLKYLVLANMLMKSGINPFDSQEAKP-------YK 299 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCC-cchhHHHHHHHHHHHHHHcCCCCCcccccCC-------CC
Confidence 4333222 22456677777653 2332 233442 23222 444555555554 1112111 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 504 CAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 504 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
-.|.....+.++.+|. .++..+-.++++.-.
T Consensus 300 NdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~ 330 (440)
T KOG1464|consen 300 NDPEILAMTNLVAAYQ-NNDIIEFERILKSNR 330 (440)
T ss_pred CCHHHHHHHHHHHHHh-cccHHHHHHHHHhhh
Confidence 1344456677777774 445555555555443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.66 E-value=42 Score=34.38 Aligned_cols=102 Identities=19% Similarity=0.137 Sum_probs=60.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 040279 414 CKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKAN 493 (626)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 493 (626)
.+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|.+..+ |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34567777766654432 445577777777777777777777776554 334555555666655555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 494 DFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 494 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+-....+.| +. |....+|...|+++++.+++.+-.+
T Consensus 713 ~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 713 VLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhcCc
Confidence 5545555444 22 2223356667777777777666543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.65 E-value=42 Score=33.43 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=26.2
Q ss_pred cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCH
Q 040279 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNW 244 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 244 (626)
.+.++..++.+..+...|.......++.-...|.+.|..
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 456777777777777776655556666666666666643
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.45 E-value=11 Score=31.94 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCC-----------hhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhh
Q 040279 56 LNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRH-----------YDAVISFYRKLVSIGLLPDFLTLNILINCFGNKE 124 (626)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~ 124 (626)
+++|+.-|++++...|. ...++..++.++...+. +++|...|++.... +|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~---- 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA---- 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH----
Confidence 56778888888887776 45666677777764332 56677777777766 89999999887642
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCC
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGV 148 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~ 148 (626)
.+|-+++.++.+.+.
T Consensus 124 ---------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 ---------AKAPELHMEIHKQGL 138 (186)
T ss_dssp ---------HTHHHHHHHHHHSSS
T ss_pred ---------HhhHHHHHHHHHHHh
Confidence 468888888887753
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.27 E-value=2.3 Score=22.70 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYR 99 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~ 99 (626)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567788888899888888876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.15 E-value=87 Score=33.37 Aligned_cols=101 Identities=15% Similarity=0.053 Sum_probs=66.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRP---DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
+.+.+.+.+++|+..-+..... .| -...+..+|..+.-.|++++|-...-.|... +..-|..-+.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----------~~~eWe~~V~ 431 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----------NAAEWELWVF 431 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----------hHHHHHHHHH
Confidence 4556678888888877765543 33 2345677888888899999999988888643 3666776677
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHh
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC 240 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 240 (626)
.+...++..... .-++......+...|..++..+..
T Consensus 432 ~f~e~~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 432 KFAELDQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred Hhccccccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 776666654432 233332222456678777777766
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 91.0 bits (224), Expect = 4e-19
Identities = 27/200 (13%), Positives = 58/200 (29%), Gaps = 5/200 (2%)
Query: 387 AQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKL---FHMLEMNKFEFGIEIFNC 443
Q + + + + A L H + ++++N
Sbjct: 111 EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170
Query: 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKA-NDFLLYMEKN 502
++ G + G + + GL P +++Y+ + + R+ + L M +
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230
Query: 503 GCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYH 562
G + L+ K V + L P T ++ D+ AKD +
Sbjct: 231 GLKLQALFTAVLLSEE-DRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
Query: 563 ECSAVSKSSYRACLYVTIFQ 582
CL+
Sbjct: 290 YPKLHLPLKTLQCLFEKQLH 309
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.9 bits (208), Expect = 3e-17
Identities = 25/237 (10%), Positives = 63/237 (26%), Gaps = 39/237 (16%)
Query: 275 KGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKH--- 331
++ Q L+ + + L ++ A + + H + K
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLF 391
T+ YN ++ G+ + +E +
Sbjct: 164 TLDMYNAVMLGWARQGAFKEL-----------------------------------VYVL 188
Query: 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAV-KLFHMLEMNKFEFGIEIFNCLIDGLCK 450
+K + PDL +Y + + + + + + + + L+ +
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 451 AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN 507
A L ++ +P V S ++ + K L ++ C
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 3e-16
Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 4/155 (2%)
Query: 195 SYSIIIDSLCKEGLVDKAKELFLEMKGRGIN---PAVVVCTTLIHGFCCAGNWEEVNGLF 251
+ A L + G+ + + ++ G+ G ++E+ +
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 252 IEMLDLGPRPNLLTFNVMIDCLCKGGKINEA-NGLLELMIQRGLNPDRFTYNSLMDGYCL 310
+ D G P+LL++ + C+ + + LE M Q GL L+
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 311 VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK 345
+ ++ + V+ + L+
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.9 bits (164), Expect = 6e-12
Identities = 31/249 (12%), Positives = 70/249 (28%), Gaps = 19/249 (7%)
Query: 2 ASRTQFRCLFSSETVSKVKLSSLFKSPRQIAAVSSPETQLNEFLHENCKSGIINLNEARY 61
+ R L + +++ + + A S E QL L E G ++L+ +
Sbjct: 56 EFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEA--PGKLSLDVEQA 113
Query: 62 FFGYMTHMQPSPPISSFNLLFGAVAKNRHYD---AVISFYRKLVSIGLLPDFLTLNILIN 118
G + Q S F ++ + L N ++
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM- 172
Query: 119 CFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLS-VALRLHKK 177
G + KE ++ + G+ PD+++Y + R + R ++
Sbjct: 173 ------LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 178 MVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG 237
M + + + S + ++ ++ P V + L+
Sbjct: 227 MSQEGLKLQALFTAVLLSEE------DRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280
Query: 238 FCCAGNWEE 246
Sbjct: 281 VYAKDGRVS 289
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 5e-12
Identities = 95/605 (15%), Positives = 187/605 (30%), Gaps = 180/605 (29%)
Query: 98 YRKLVSIGLLPDFL-------TLNILINCFGNKERGLCVENRIKEAT---------WLF- 140
Y+ ++S+ F+ ++ + +E +++ I W
Sbjct: 18 YKDILSV-FEDAFVDNFDCKDVQDMPKSILSKEE----IDHIIMSKDAVSGTLRLFWTLL 72
Query: 141 ---KNMIA-F---GVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNI 193
+ M+ F +R + Y L++ +T ++ + + + L + +
Sbjct: 73 SKQEEMVQKFVEEVLRIN---YKFLMSPI-KTEQRQPSMMTRMYI---EQRDRLYNDNQV 125
Query: 194 FS-YSI----IIDSLCKEGL--VDKAKELFLE-MKGRG---INPAVVVC--TTLIHGFCC 240
F+ Y++ L ++ L + AK + ++ + G G + A+ VC +
Sbjct: 126 FAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCKMDF 182
Query: 241 AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDC-LCKGG--------KINEA-NGLLELMI 290
W + L LL ID +I+ L L+
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLY---QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 291 QRGLNPDRFTYNSL--------------MDGYC--LVGRIDTAR--EIFLSMHSKGCKHT 332
+ N L + C L+ T R ++ + + H
Sbjct: 240 SKPYE------NCLLVLLNVQNAKAWNAFNLSCKILL----TTRFKQVTDFLSAATTTH- 288
Query: 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGV----RQTVITYNTLLSGLFQAGQA---- 384
I ++ + L +E SL + + R+ V+T N +
Sbjct: 289 -----ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIRDGLA 342
Query: 385 ---GYAQKLFD------EMKLYNVEP--------DLSTY----NILIDGLC------KNN 417
+ D E L +EP LS + +I L +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 418 CVQEAVKLFH---MLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK----------- 463
V V H ++E E I I + ++ K L+N + L H+
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK---LENEYAL-HRSIVDHYNIPKT 458
Query: 464 LPQKGLVPTVV-TYS---IMIHGLCRKGKLEKANDF-LLYM---------EKNGCAPNVV 509
L+P + Y I H L E+ F ++++ + A N
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 510 T--FNTLM-----HGFLQNNK---TSKVVELLHKMAEPERNLVPDDTTFSIV-VDLLAKD 558
NTL ++ +N V +L + + E NL+ T ++ + L+A+D
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT-DLLRIALMAED 576
Query: 559 EKYHE 563
E E
Sbjct: 577 EAIFE 581
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 626 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.41 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.19 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.19 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.12 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.11 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.09 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.09 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.08 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.07 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.04 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.03 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.03 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.99 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.98 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.97 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.94 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.94 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.91 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.89 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.87 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.86 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.85 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.84 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.81 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.79 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.78 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.78 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.72 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.64 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.64 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.64 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.63 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.61 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.57 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.55 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.53 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.52 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.52 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.51 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.5 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.5 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.46 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.45 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.44 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.41 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.38 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.34 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.28 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.27 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.26 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.24 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.24 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.21 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.21 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.17 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.17 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.17 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.14 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.13 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.12 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.1 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.07 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.06 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.06 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.97 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.91 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.83 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.82 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.81 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.8 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.78 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.71 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.71 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.63 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.57 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.52 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.45 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.26 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.12 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.94 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.87 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.83 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.81 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.77 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.77 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.65 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.63 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.47 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.38 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.33 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.28 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.17 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.13 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.11 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.03 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.02 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.96 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.85 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.72 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.4 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.06 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.94 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.55 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.22 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.3 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.24 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.22 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.08 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.89 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.47 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.44 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.41 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.85 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.48 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.77 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.7 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.69 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.39 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.52 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.03 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.61 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.22 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.19 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.46 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.21 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.92 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.35 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.2 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.08 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=356.07 Aligned_cols=491 Identities=9% Similarity=-0.037 Sum_probs=401.6
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
.+..+...+... +.+++..|+.++..+.+.|++++|+.+|+++... .|+..++..+ +..+...|+++
T Consensus 68 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l-------~~~~~~~g~~~ 134 (597)
T 2xpi_A 68 SFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWL-------AQVYCCTGDYA 134 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHH-------HHHHHHTTCHH
T ss_pred ccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHH-------HHHHHHcCcHH
Confidence 566666666654 5568899999999999999999999999999865 6777666554 46788999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------CCCccccccHHHHHHHHHHHHh
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDY---------ENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
+|+.+|+++... +++..+++.++.+|.+.|++++|+++|+++..... ......+.+..+|+.++.+|.+
T Consensus 135 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 135 RAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999998654 67899999999999999999999999995322110 0000124568899999999999
Q ss_pred cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 040279 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVN--GL-FIEMLDLGPRPNLLTFNVMIDCLCKGGKINEA 282 (626)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 282 (626)
.|++++|++.|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|
T Consensus 213 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence 999999999999998864 224455666655444333322221 11 44554444444555677778889999999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 283 NGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
.++|+++.+. +++..++..++.+|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++++.+.
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 292 EDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9999998876 57899999999999999999999999999998763 37888999999999999999999999999875
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 040279 363 GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFN 442 (626)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 442 (626)
.+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|..+|+++.... +.+..++.
T Consensus 369 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 369 -HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp -CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 35578899999999999999999999999998753 4567899999999999999999999999998775 56888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHH
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN----GCAPN--VVTFNTLMH 516 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~ 516 (626)
.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 99999999999999999999998853 347889999999999999999999999999875 55777 689999999
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+|.+.|++++|.+.++++.+ ..| +..+|..++.+|.+.|++++|.+.++++.
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLL----LSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999988 556 68899999999999999999999999986
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-40 Score=345.45 Aligned_cols=486 Identities=9% Similarity=-0.006 Sum_probs=410.2
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040279 39 TQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILIN 118 (626)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 118 (626)
..++.++..+.+.| ++++|+.+|++++... |+..++..++.++.+.|++++|+.+|+++... .++...++.+.
T Consensus 85 ~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~- 157 (597)
T 2xpi_A 85 DYLRLWRHDALMQQ--QYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA- 157 (597)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHcc--CchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH-
Confidence 34567788888877 9999999999998654 46688999999999999999999999998654 56666666654
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHHHHC---------------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNMIAF---------------GVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDY 183 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 183 (626)
..|.+.|++++|+.+|+++... +.+++..+|+.++.+|.+.|++++|++.|+++.+.+
T Consensus 158 ------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 230 (597)
T 2xpi_A 158 ------FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD- 230 (597)
T ss_dssp ------HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ------HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 5788999999999999953222 123357899999999999999999999999999876
Q ss_pred CCCccccccHHHHHHHHHHHHhcCCcchHHH--H-HHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 184 ENGLISKTNIFSYSIIIDSLCKEGLVDKAKE--L-FLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPR 260 (626)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 260 (626)
+.+...+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +
T Consensus 231 ------p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~ 302 (597)
T 2xpi_A 231 ------AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--E 302 (597)
T ss_dssp ------TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--G
T ss_pred ------chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--C
Confidence 4566677766665544433222211 1 444554444445566777788899999999999999999875 4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 040279 261 PNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILI 340 (626)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 340 (626)
++..+++.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 789999999999999999999999999999875 3477889999999999999999999999998764 44788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 040279 341 NGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQ 420 (626)
Q Consensus 341 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (626)
..|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|+++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998863 3467899999999999999999999999998864 557889999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC----CCCCC--HhHHHHHHHHHHhcCCHHHHHH
Q 040279 421 EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK----GLVPT--VVTYSIMIHGLCRKGKLEKAND 494 (626)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 494 (626)
+|..+|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999998765 558899999999999999999999999999875 55677 7899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHH
Q 040279 495 FLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLA 556 (626)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 556 (626)
.++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+ +.|+ ...+..+..+|.
T Consensus 538 ~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 538 ALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA----ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCChHHHHHHHHHHh
Confidence 999999875 55889999999999999999999999999998 7784 667777776654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-28 Score=243.01 Aligned_cols=383 Identities=11% Similarity=0.049 Sum_probs=299.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG 237 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (626)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 3456677888888888888887765 5666777777788888888888888888877653 4466788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 040279 238 FCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTA 317 (626)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 317 (626)
|...|++++|++.|+++.+..+. +..+|..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 88888888888888888775332 55678888888888888888888888888763 22344566677778888888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 040279 318 REIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLY 397 (626)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 397 (626)
.+.|+++.+... .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 155 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888877642 356778888888888888888888888888763 335677778888888888888888888888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHH
Q 040279 398 NVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYS 477 (626)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 477 (626)
. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+..++.+.|++++|...|+++.+.. +.+..++.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 3 3356778888888888888888888888888765 4567788888888888899999999988888752 45678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLA 556 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 556 (626)
.++..+...|++++|.+.++++.+.. +.+..++..++.++.+.|++++|...++++++ +.| +...+..++.++.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT----TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCHHHHHhHHHHHH
Confidence 88888888999999999998888753 45577888888888899999999999999887 667 4677778887776
Q ss_pred ccCC
Q 040279 557 KDEK 560 (626)
Q Consensus 557 ~~g~ 560 (626)
..|+
T Consensus 385 ~~~~ 388 (388)
T 1w3b_A 385 EMQD 388 (388)
T ss_dssp HTCC
T ss_pred HccC
Confidence 6553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-28 Score=240.68 Aligned_cols=383 Identities=13% Similarity=0.056 Sum_probs=334.0
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
+..+.+.|++++|+..++++.+.. +.+...+..+...+...|++++|...++...+.+ |.+..+|..+...+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchHHHHHHHHHH
Confidence 456778999999999999998874 4466778888899999999999999999999876 67889999999999
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 283 (626)
.+.|++++|++.|+++.+.. +.+...|..+..++...|++++|.+.|+++.+..+. +...+..+...+...|++++|.
T Consensus 78 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999998863 334567999999999999999999999999986433 5567788889999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 040279 284 GLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNG 363 (626)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 363 (626)
..|+++.+.. +.+..++..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|+..+++.....
T Consensus 156 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 156 ACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999874 33678899999999999999999999999998753 367788999999999999999999999998863
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 040279 364 VRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNC 443 (626)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 443 (626)
+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..
T Consensus 234 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 310 (388)
T 1w3b_A 234 -PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNN 310 (388)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 3467888999999999999999999999999864 4467789999999999999999999999998765 678899999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNK 523 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 523 (626)
+...+...|++++|...++++.+.. +.+..++..++.++.+.|++++|.+.|+++.+.. +.+...+..+...+...|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999998852 4457899999999999999999999999999863 4456788888887766653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=241.40 Aligned_cols=205 Identities=14% Similarity=0.168 Sum_probs=156.8
Q ss_pred hHHHHHHHHhhCCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---------HH
Q 040279 211 KAKELFLEMKGRGINPAV-VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGK---------IN 280 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 280 (626)
.+..+.+++.+++..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666554443 35777788888888888888888888888888888888888888876554 57
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 281 EANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQII 360 (626)
Q Consensus 281 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 360 (626)
.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040279 361 SNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK 415 (626)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (626)
+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888888888888877765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=240.99 Aligned_cols=212 Identities=13% Similarity=0.158 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDR-FTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQII 360 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 360 (626)
+..+.+.+.+.+....+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 34444445444443332 234555566666666666666666666666666666666666655544321000
Q ss_pred HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 040279 361 SNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEI 440 (626)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 440 (626)
...+..+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 00111344555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=229.99 Aligned_cols=431 Identities=12% Similarity=-0.010 Sum_probs=280.4
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
.+..+...|++++|+..|+++++.. |+..++..++.++.+.|++++|+..++++++.+ |.+..++..+..+
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHHHHHHHHH
Confidence 4578889999999999999999874 789999999999999999999999999999876 6778899999999
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEA 282 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 282 (626)
+.+.|++++|.+.|+++...+ +++......++..+........+.+.+..+...+..|+...+..-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998875 3455555555555554444444444333322221111111111100000001111111
Q ss_pred HHHHHHHHhcCC---------CCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHh-----cCC--------CCChhhHH
Q 040279 283 NGLLELMIQRGL---------NPDRFTYNSLMDGYCL---VGRIDTAREIFLSMHS-----KGC--------KHTVVSYN 337 (626)
Q Consensus 283 ~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 337 (626)
..+...+..... +.+...+......+.. .|+++.|...|+++.+ ... +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111110 1113333333343443 6777777777777766 211 11344566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040279 338 ILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNN 417 (626)
Q Consensus 338 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 417 (626)
.+...+...|++++|+..++++.+.... ...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 6677777777888888877777765332 6667777777777777777877777777653 335566777777777778
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLL 497 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 497 (626)
++++|...++.+.... +.+...+..+...+...|++++|..+++++.+.. +.+..++..++.++...|++++|.+.++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888887777654 4456677777777777788888888887777642 2346677777777778888888888887
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 040279 498 YMEKNGC-APN----VVTFNTLMHGFLQ---NNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVS 568 (626)
Q Consensus 498 ~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 568 (626)
++.+... .++ ...+..++..+.. .|++++|...++++++ ..| +..++..++.++.+.|++++|.+.+
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK----LDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7766420 111 2367777777777 7888888888888776 455 4566777777788888888888888
Q ss_pred HHHH
Q 040279 569 KSSY 572 (626)
Q Consensus 569 ~~~~ 572 (626)
+++.
T Consensus 473 ~~a~ 476 (514)
T 2gw1_A 473 EESA 476 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7775
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-24 Score=225.67 Aligned_cols=446 Identities=13% Similarity=0.001 Sum_probs=299.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVIT 154 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 154 (626)
...+...+..+.+.|++++|+..|+++++. .|+...+..+ +..+...|++++|+..++++++.+ +.+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 75 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNL-------SACYVSVGDLKKVVEMSTKALELK-PDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHH-------HHHHHHHTCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhH-------HHHHHHHhhHHHHHHHHHHHhccC-hHHHHH
Confidence 345666777777777777777777777766 3554443333 356677777777777777777764 345667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHH
Q 040279 155 YGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTL 234 (626)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (626)
+..++.++.+.|++++|+..|+++...+ +.+......++..+........+.+.+..+...+..|+...+..-
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNG-------DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSS-------SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 7777777778888888888888777765 233333333333333332222222222222211111111111110
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC---
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDLGP---------RPNLLTFNVMIDCLCK---GGKINEANGLLELMIQ-----RGL--- 294 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--- 294 (626)
...............+...+..... +.+...+......+.. .|++++|...++++.+ ..-
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 0000001111111111111111111 1123344444444444 7888888888888877 311
Q ss_pred -----CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 040279 295 -----NPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVI 369 (626)
Q Consensus 295 -----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 369 (626)
+.+..++..+...+...|++++|...++++.+.... ...+..+..++...|++++|+..++++.+.. +.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 305 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSS 305 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH
Confidence 123456777788888999999999999998887533 7778888888999999999999999988763 34667
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 040279 370 TYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLC 449 (626)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (626)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILT 383 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHH
Confidence 78888889999999999999999988764 3456678888888999999999999999888654 456778888999999
Q ss_pred HcCCHHHHHHHHHhcccCCCC-CC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040279 450 KAGRLDNAWELFHKLPQKGLV-PT----VVTYSIMIHGLCR---KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (626)
..|++++|...++++.+.... ++ ...+..++.++.. .|++++|.+.++++.+.. +.+..++..+...+...
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 999999999999998774211 11 3388899999999 999999999999998864 55677889999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCHHH
Q 040279 522 NKTSKVVELLHKMAEPERNLVPDDTT 547 (626)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~p~~~~ 547 (626)
|++++|...++++.+ +.|+...
T Consensus 463 g~~~~A~~~~~~a~~----~~~~~~~ 484 (514)
T 2gw1_A 463 EDIDEAITLFEESAD----LARTMEE 484 (514)
T ss_dssp TCHHHHHHHHHHHHH----HCSSHHH
T ss_pred cCHHHHHHHHHHHHH----hccccHH
Confidence 999999999999998 7786544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-23 Score=216.76 Aligned_cols=428 Identities=13% Similarity=0.039 Sum_probs=305.2
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHH
Q 040279 120 FGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSII 199 (626)
Q Consensus 120 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (626)
+..++..+...|++++|+..|++++... +.+..++..++.++.+.|++++|++.++++++.+ |.+..++..+
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l 99 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHHHHH
Confidence 3345678899999999999999999875 5578899999999999999999999999999876 6778899999
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcC
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGP--RPNLLTFNVMIDCLCKGG 277 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 277 (626)
..++...|++++|++.|+.+ .. .|+ .....+..+...+...+|...++++....+ .+........+..+....
T Consensus 100 a~~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 99999999999999999744 32 222 222334455566667889999988865421 111112233344455556
Q ss_pred CHHHHHHHHHHHHhcCCCCCHh-hHHHHHHHHH--------hcCChHHHHHHHHHHHhcCCCCC-------hhhHHHHHH
Q 040279 278 KINEANGLLELMIQRGLNPDRF-TYNSLMDGYC--------LVGRIDTAREIFLSMHSKGCKHT-------VVSYNILIN 341 (626)
Q Consensus 278 ~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~--------~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~ 341 (626)
+.+.+...+...... .+... ....+...+. ..|++++|..+++.+.+.... + ..++..+..
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHH
Confidence 665555443332221 12211 2222222221 224788888888888876422 2 224566667
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040279 342 GYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQE 421 (626)
Q Consensus 342 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 421 (626)
.+...|++++|+..++++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 778888899999999888876 3447777888888888899999999998887753 4467788888888888999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 422 AVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
|...++.+.... +.+...+..+..++...|++++|..+++++.+.. +.+...+..++.++...|++++|.+.++++.+
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999998887654 4456778888888889999999999998888753 33567888888888999999999999988876
Q ss_pred CC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 040279 502 NG-----CAPNVVTFNTLMHGFLQN----------NKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECS 565 (626)
Q Consensus 502 ~~-----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 565 (626)
.. .......+.....++... |++++|...++++.+ ..| +...+..++.++.+.|++++|.
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE----LDPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 42 111122344555667777 889999999999887 566 4677888888999999999999
Q ss_pred HHHHHHH
Q 040279 566 AVSKSSY 572 (626)
Q Consensus 566 ~~~~~~~ 572 (626)
+.++++.
T Consensus 483 ~~~~~al 489 (537)
T 3fp2_A 483 ELFEDSA 489 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998886
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-23 Score=207.07 Aligned_cols=317 Identities=9% Similarity=0.003 Sum_probs=233.7
Q ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 040279 190 KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVM 269 (626)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 269 (626)
+.+...+..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.++. +..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 6778889999999999999999999999998763 446788999999999999999999999999887543 67788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH---hhHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCChh
Q 040279 270 IDCLCKGGKINEANGLLELMIQRGLNPDR---FTYNSL------------MDGYCLVGRIDTAREIFLSMHSKGCKHTVV 334 (626)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 334 (626)
+..|...|++++|...|+++.+.+. .+. ..+..+ ...+...|++++|...|+.+.+.. +.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 9999999999999999999988632 233 444444 344777888888888888887764 23667
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 040279 335 SYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNIL----- 409 (626)
Q Consensus 335 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 409 (626)
.+..+..+|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 77888888888888888888888887652 3466778888888888888888888888887642 2233334333
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHH
Q 040279 410 -------IDGLCKNNCVQEAVKLFHMLEMNKFEFG----IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSI 478 (626)
Q Consensus 410 -------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (626)
...+...|++++|...|+.+.... +.+ ...+..+..++.+.|++++|+..++++.+.. +.+..+|..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 566777777777777777776543 112 3356667777777777777777777776542 235667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLM 515 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (626)
++.+|...|++++|...++++.+.. +-+...+..+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 7777777777777777777777642 22344555554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-23 Score=215.85 Aligned_cols=439 Identities=12% Similarity=0.043 Sum_probs=306.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVIT 154 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 154 (626)
...|..++..+.+.|++++|+..|+++++. .|+....-.. ++..+...|++++|+..|+++++.+ +.+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~------la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 95 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSN------ISACYISTGDLEKVIEFTTKALEIK-PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHH------HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHH------HHHHHHHcCCHHHHHHHHHHHHhcC-CchHHH
Confidence 456777888888888888888888888866 4544322222 2456778888888888888888764 446777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCC--CCCCcchHH
Q 040279 155 YGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG--INPAVVVCT 232 (626)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 232 (626)
+..++.++...|++++|+..|+ ..... |+ .....+..+...+...+|...++++.... ..+......
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~-~~~~~--------~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLS-VLSLN--------GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHC---------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHhcC--------CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 8888888888888888888886 43322 11 11222334445555677888888876541 111122233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCCC------
Q 040279 233 TLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLL-TFNVMIDCLC--------KGGKINEANGLLELMIQRGLNPD------ 297 (626)
Q Consensus 233 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~------ 297 (626)
..+..+....+.+.+...+...... .+... ....+...+. ..|++++|..+++.+.+.... +
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLREN 241 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHH
Confidence 4445555666666655544333221 11111 2222222222 124788888888888876322 2
Q ss_pred -HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 040279 298 -RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLS 376 (626)
Q Consensus 298 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 376 (626)
..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|+..++++.+.. +.+..++..+..
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 318 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQ 318 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHH
Confidence 2245666677888899999999999998874 457788888888889999999999999988763 346778888899
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 040279 377 GLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDN 456 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 456 (626)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999988753 3356778888899999999999999999888765 5567788889999999999999
Q ss_pred HHHHHHhcccCCCC-----CCHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040279 457 AWELFHKLPQKGLV-----PTVVTYSIMIHGLCRK----------GKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 457 A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (626)
|...|+++.+.... .....+..+..++... |++++|...++++.+.. +.+..++..+..+|...
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 99999998763211 1122344556777777 99999999999998864 55678899999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCHH
Q 040279 522 NKTSKVVELLHKMAEPERNLVPDDT 546 (626)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~p~~~ 546 (626)
|++++|.+.++++++ +.|+..
T Consensus 476 g~~~~A~~~~~~al~----~~~~~~ 496 (537)
T 3fp2_A 476 EKIDEAIELFEDSAI----LARTMD 496 (537)
T ss_dssp TCHHHHHHHHHHHHH----HC--CH
T ss_pred ccHHHHHHHHHHHHH----hCCCcH
Confidence 999999999999998 667543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-22 Score=204.10 Aligned_cols=329 Identities=12% Similarity=0.063 Sum_probs=254.8
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHH
Q 040279 137 TWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELF 216 (626)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 216 (626)
...+.++.... +.+...+..++..+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|.+.|
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33344444332 4456778888888888888888888888888765 566888888888888888888888888
Q ss_pred HHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHH------------HHHHHhcCCHHH
Q 040279 217 LEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNL---LTFNVM------------IDCLCKGGKINE 281 (626)
Q Consensus 217 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~ 281 (626)
+++.+.+ +.+...+..+..+|...|++++|.+.|+++.+..+. +. ..+..+ ...+...|++++
T Consensus 84 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 84 TKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888764 335677888888888888888888888888875432 33 444444 445888999999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIIS 361 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 361 (626)
|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++..
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998864 4477788889999999999999999999988764 34678899999999999999999999999987
Q ss_pred CCCCCChhhHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHH
Q 040279 362 NGVRQTVITYNTL------------LSGLFQAGQAGYAQKLFDEMKLYNVEPD-----LSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 362 ~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
.. +.+...+..+ ...+...|++++|...|+.+.+. .|+ ...+..+..++.+.|++++|..
T Consensus 240 ~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 240 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 53 2244444444 78889999999999999999874 344 3478888899999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH
Q 040279 425 LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG 482 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (626)
.++.+.... +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..+
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 999988654 5578899999999999999999999999998852 2245666665544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-18 Score=174.77 Aligned_cols=362 Identities=13% Similarity=0.016 Sum_probs=301.8
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh----cC
Q 040279 136 ATWLFKNMIAFGVRPDVITYGTLINGFCR----TGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK----EG 207 (626)
Q Consensus 136 A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 207 (626)
+...++...+.| +..++..+...|.. .+++++|+..|++..+.+ +...+..|...|.. .+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~ 93 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQ 93 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCC
Confidence 455666665543 77888888888888 899999999999998754 46678888888888 89
Q ss_pred CcchHHHHHHHHhhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCH
Q 040279 208 LVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC----AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCK----GGKI 279 (626)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 279 (626)
++++|.+.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++
T Consensus 94 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 94 DYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999998875 66778888888888 789999999999998875 56778888888887 7899
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHH
Q 040279 280 NEANGLLELMIQRGLNPDRFTYNSLMDGYCL----VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK----ILNVEE 351 (626)
Q Consensus 280 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 351 (626)
++|...|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999998875 67778888888887 899999999999998875 66778888888876 789999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHH
Q 040279 352 AMSLYRQIISNGVRQTVITYNTLLSGLFQ----AGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN-----NCVQEA 422 (626)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A 422 (626)
|+..|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999998764 55667777777877 899999999999998754 456677777788776 899999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh----cCCHHHHHHH
Q 040279 423 VKLFHMLEMNKFEFGIEIFNCLIDGLCKAG---RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR----KGKLEKANDF 495 (626)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 495 (626)
...++...+.+ +...+..+...|...| ++++|+++|++..+. .+...+..+...|.. .+++++|.+.
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999888765 4567777888887766 789999999999886 367888889999988 8899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhc
Q 040279 496 LLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAE 536 (626)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 536 (626)
|++..+.+ +...+..+...|.. .+++++|...|+++.+
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 99999865 57788888888888 8999999999999988
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-19 Score=176.30 Aligned_cols=330 Identities=9% Similarity=0.014 Sum_probs=211.2
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 040279 192 NIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMID 271 (626)
Q Consensus 192 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 271 (626)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34556666667777777777777777766653 334566666677777777777777777776665322 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC--CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 040279 272 CLCKGGKINEANGLLELMIQRGLN--PDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNV 349 (626)
Q Consensus 272 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (626)
.+...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777776654210 12222222211000 01122234556666777
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 350 EEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHML 429 (626)
Q Consensus 350 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 429 (626)
++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766652 3355566666666777777777777777766543 345566666666777777777777777666
Q ss_pred HHCCCCcCHHHHH------------HHHHHHHHcCCHHHHHHHHHhcccCCCCCC-H----hHHHHHHHHHHhcCCHHHH
Q 040279 430 EMNKFEFGIEIFN------------CLIDGLCKAGRLDNAWELFHKLPQKGLVPT-V----VTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 430 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A 492 (626)
.+.. +.+...+. .+...+...|++++|...++++.+.. |+ . ..+..+..++...|++++|
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 6543 22333222 23566788889999999888887742 33 2 2345577888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHH
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLA 556 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 556 (626)
.+.++++.+.. +.+..++..++..+...|++++|...++++++ +.|+ ...+..+..+..
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~----~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE----HNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCChHHHHHHHHHHH
Confidence 99999888863 44677888888889999999999999999988 6775 455555555543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-19 Score=172.37 Aligned_cols=333 Identities=12% Similarity=0.031 Sum_probs=199.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcch
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVV 230 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 230 (626)
+...+..+...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|.+.++++.+.. +.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH
Confidence 34567777888888888888888888888765 5667788888888888888888888888887753 335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040279 231 CTTLIHGFCCAGNWEEVNGLFIEMLDLGPR--PNLLTFNVM------------IDCLCKGGKINEANGLLELMIQRGLNP 296 (626)
Q Consensus 231 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 296 (626)
+..+...+...|++++|...|++..+..+. .+...+..+ ...+...|++++|...++.+.+.. +.
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 152 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VW 152 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 888888888888888888888888775330 133333333 334444455555555555544432 22
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 040279 297 DRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLS 376 (626)
Q Consensus 297 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 376 (626)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~- 229 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK- 229 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH-
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH-
Confidence 33444444444444455555554444444432 1233444444444444444444444444444331 11111111000
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHHcC
Q 040279 377 GLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI----EIFNCLIDGLCKAG 452 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 452 (626)
.+. .......+...+.+.|++++|...++.+.... +.+. ..+..+..++...|
T Consensus 230 ----------------~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 230 ----------------QVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp ----------------HHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------HHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHcc
Confidence 000 00111223555677778888888887776543 2222 23445667777888
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
++++|...++++.+.. +.+..+|..++.++...|++++|.+.|+++.+.. +.+...+..+..+...
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 8888888888877642 2357777788888888888888888888888753 3345556666555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-17 Score=169.34 Aligned_cols=363 Identities=14% Similarity=0.054 Sum_probs=309.5
Q ss_pred HHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh----cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHh----cC
Q 040279 171 ALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK----EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC----AG 242 (626)
Q Consensus 171 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 242 (626)
+...++...+. .++..+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .+
T Consensus 26 ~~~~~~~~a~~---------g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 93 (490)
T 2xm6_A 26 NLEQLKQKAES---------GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQ 93 (490)
T ss_dssp CHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 35555555543 357778888888888 899999999999998875 67788889999998 89
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCh
Q 040279 243 NWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCK----GGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL----VGRI 314 (626)
Q Consensus 243 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~ 314 (626)
++++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++
T Consensus 94 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 94 DYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999998865 66778888888888 889999999999998875 56777788888887 7899
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHH
Q 040279 315 DTAREIFLSMHSKGCKHTVVSYNILINGYCK----ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQ----AGQAGY 386 (626)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 386 (626)
++|.++|++..+.+ +...+..+...|.. .++.++|+..|++..+.+ +...+..+...|.. .+++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999998875 77888889999988 899999999999999874 56677888888886 889999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc-----CCHHHH
Q 040279 387 AQKLFDEMKLYNVEPDLSTYNILIDGLCK----NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKA-----GRLDNA 457 (626)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A 457 (626)
|..+|++..+.+ +...+..+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999998764 45667777777877 899999999999988765 566777888888887 899999
Q ss_pred HHHHHhcccCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 040279 458 WELFHKLPQKGLVPTVVTYSIMIHGLCRKG---KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVVEL 530 (626)
Q Consensus 458 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 530 (626)
+.+|++..+.| +...+..+...|...| ++++|++.|++..+.| +...+..+...|.. .+++++|...
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999998864 5678888888888866 8899999999999864 77889999999998 8999999999
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHHhh
Q 040279 531 LHKMAEPERNLVPDDTTFSIVVDLLAK----DEKYHECSAVSKSSYRA 574 (626)
Q Consensus 531 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 574 (626)
|+++.+ . .+...+..++.+|.. .+++++|.++|+++...
T Consensus 390 ~~~A~~--~---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 390 MRKAAE--Q---GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHH--T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHh--C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 999998 3 357888999999998 89999999999999754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-19 Score=169.77 Aligned_cols=291 Identities=9% Similarity=-0.073 Sum_probs=191.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILIN 341 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (626)
+...+...+..+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++.+... .+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHH
Confidence 34445555555555566666666666655542 22334444455555566666666666666655432 24455556666
Q ss_pred HHHhcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 040279 342 GYCKIL-NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQ 420 (626)
Q Consensus 342 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 420 (626)
.+...| ++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666666666666542 2244556666666666666777766666666542 223445555666777777777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC--------CCCCHhHHHHHHHHHHhcCCHHHH
Q 040279 421 EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKG--------LVPTVVTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A 492 (626)
+|...++.+.... +.+...+..+...+...|++++|...++++.+.. .+.+..++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777776554 4456677777777777778777777777766521 133456888888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHH-HccCCHh
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLL-AKDEKYH 562 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~ 562 (626)
.+.++++.+.. +.+...+..+..++...|++++|.+.++++.+ +.| +...+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG----LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT----TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc----cCCCchHHHHHHHHHHHHHhCchh
Confidence 99999988864 44677888889999999999999999999987 677 567788888877 4556543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-17 Score=172.76 Aligned_cols=409 Identities=11% Similarity=0.036 Sum_probs=268.8
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcc
Q 040279 150 PDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVV 229 (626)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 229 (626)
-+..+|..++. +.+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|.++|+++... .|+..
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~ 80 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHID 80 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChH
Confidence 35566666666 356677777777777776654 556666666777777777777777777776665 24555
Q ss_pred hHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhcC
Q 040279 230 VCTTLIHGF-CCAGNWEEVNG----LFIEMLDL-GPRP-NLLTFNVMIDCLCK---------GGKINEANGLLELMIQRG 293 (626)
Q Consensus 230 ~~~~li~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~ 293 (626)
.|...+... ...|+.++|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|++.++..
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P 160 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP 160 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch
Confidence 555555422 23455544443 55554432 3222 34455555554433 466677777777766631
Q ss_pred CCCCHhhHHHHHHHH-------------HhcCChHHHHHHHHHHH------hcC---CCCC--------hhhHHHHHHHH
Q 040279 294 LNPDRFTYNSLMDGY-------------CLVGRIDTAREIFLSMH------SKG---CKHT--------VVSYNILINGY 343 (626)
Q Consensus 294 ~~~~~~~~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~ 343 (626)
.......|....... ...++++.|..+++.+. +.. ++|+ ...|...+...
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e 240 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWE 240 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 111112222211110 12345666766666532 211 2333 23455544433
Q ss_pred Hhc----CCh----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhCCCCC
Q 040279 344 CKI----LNV----EEAMSLYRQIISNGVRQTVITYNTLLSGLFQ-------AGQAG-------YAQKLFDEMKLYNVEP 401 (626)
Q Consensus 344 ~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~ 401 (626)
... ++. +.++.+|++++.. .+.+...|..++..+.. .|+++ +|..++++..+.-.+.
T Consensus 241 ~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 241 KSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 222 232 4778899998876 34467888888887775 68876 8999999998632344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHH
Q 040279 402 DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI-EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMI 480 (626)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 480 (626)
+...+..++..+.+.|++++|..+|+++.... +.+. ..|..++..+.+.|++++|.++|++..+.. +.+...|...+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a 397 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAA 397 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHH
Confidence 67788889999999999999999999998863 2233 588888898999999999999999998852 22333443333
Q ss_pred HH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--HHHHHHHHHHHHc
Q 040279 481 HG-LCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--DTTFSIVVDLLAK 557 (626)
Q Consensus 481 ~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 557 (626)
.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++++. .....|+ ...|...+.....
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~-~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT-SGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-SCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHH
Confidence 22 346899999999999998863 44678999999999999999999999999988 1123342 4578888888888
Q ss_pred cCCHhHHHHHHHHHHh
Q 040279 558 DEKYHECSAVSKSSYR 573 (626)
Q Consensus 558 ~g~~~~A~~~~~~~~~ 573 (626)
.|+.+.+.++.+++..
T Consensus 476 ~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 476 IGDLASILKVEKRRFT 491 (530)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999999863
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-18 Score=166.41 Aligned_cols=293 Identities=13% Similarity=0.036 Sum_probs=219.4
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 040279 225 NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSL 304 (626)
Q Consensus 225 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 304 (626)
+.+...+..+...+...|++++|+++|+++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 446667777788888888888888888888776433 55566667777788888888888888887763 3356677777
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 040279 305 MDGYCLVG-RIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQ 383 (626)
Q Consensus 305 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (626)
...+...| ++++|...|+++.+... .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 78888888 88888888888877642 356677888888888888888888888887763 2345666667888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCcCHHHHHHHHHHHHHcCCHH
Q 040279 384 AGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK--------FEFGIEIFNCLIDGLCKAGRLD 455 (626)
Q Consensus 384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 455 (626)
+++|...++++.+.. +.+...+..+...+...|++++|...++.+.... .+....++..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888887753 4456778888888888888888888888776431 1334567888888888889999
Q ss_pred HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH
Q 040279 456 NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF-LQNNKT 524 (626)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~ 524 (626)
+|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+..++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 9999888887753 3357788888888888899999999988888753 44566777777777 345554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-17 Score=167.88 Aligned_cols=426 Identities=9% Similarity=0.024 Sum_probs=280.9
Q ss_pred HHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHhhhhhhhhhhhcCCHHHHHHHHH
Q 040279 63 FGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL-TLNILINCFGNKERGLCVENRIKEATWLFK 141 (626)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~ 141 (626)
|++.+...|. +..+|..++.. .+.|++++|+.+|+++++. .|+.. .|...+ ..+.+.|++++|..+|+
T Consensus 2 le~al~~~P~-~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~-------~~~~~~~~~~~a~~~~~ 70 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYI-------EAEIKAKNYDKVEKLFQ 70 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHH-------HHHHHTTCHHHHHHHHH
T ss_pred hhhHhhhCCC-CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHH-------HHHHhcCCHHHHHHHHH
Confidence 4556666555 78889888884 7789999999999999875 55443 344433 45667889999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHH-HhcCChHHHHH----HHHHHHhC-CCCCCccccccHHHHHHHHHHHHh---------c
Q 040279 142 NMIAFGVRPDVITYGTLINGF-CRTGNLSVALR----LHKKMVSG-DYENGLISKTNIFSYSIIIDSLCK---------E 206 (626)
Q Consensus 142 ~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~---------~ 206 (626)
+++.. .|+...|..++... ...|+.+.|.+ +|++.+.. +. .+.+...|...+....+ .
T Consensus 71 ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 71 RCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM-----EIMSYQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp HHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTT-----STTCHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred HHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCC-----CcccHHHHHHHHHHHhcCCCcccHHHH
Confidence 99876 46777777777533 34677776655 77776543 21 13456777777776655 6
Q ss_pred CCcchHHHHHHHHhhCCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040279 207 GLVDKAKELFLEMKGRGINPAV---VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283 (626)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 283 (626)
|+++.|..+|++..+. |.. ..|..........|. . +...++. ...+++..|.
T Consensus 144 ~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~ 198 (530)
T 2ooe_A 144 QRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNAR 198 (530)
T ss_dssp HHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHH
Confidence 7888999999998873 322 222222211100010 0 0000110 0123344555
Q ss_pred HHHHHH------HhcC---CCCC--------HhhHHHHHHHHHhc----CCh----HHHHHHHHHHHhcCCCCChhhHHH
Q 040279 284 GLLELM------IQRG---LNPD--------RFTYNSLMDGYCLV----GRI----DTAREIFLSMHSKGCKHTVVSYNI 338 (626)
Q Consensus 284 ~~~~~~------~~~~---~~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~ 338 (626)
.++... .+.. ++|+ ...|...+...... ++. ..+..+|++..... +.+...|..
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~ 277 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYE 277 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 444432 1111 2332 13444444332221 222 36777888877763 336777877
Q ss_pred HHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H
Q 040279 339 LINGYCK-------ILNVE-------EAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPD-L 403 (626)
Q Consensus 339 l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 403 (626)
++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ .
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 355 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCH
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCc
Confidence 7777765 68876 88999998886323446778888888888899999999999998875 443 2
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHH
Q 040279 404 -STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDG-LCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIH 481 (626)
Q Consensus 404 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (626)
..|...+..+.+.|++++|..+|++..+.. +.+...+...... +...|+.++|..+|++..+.. +.+...|..++.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~ 433 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 478888888888889999999999888653 3333444333222 336899999999999888752 335788888898
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 482 GLCRKGKLEKANDFLLYMEKNG-CAPN--VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+.+.|+.++|..+|++..+.+ ..|+ ...|...+......|+.+.+..+.+++.+
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8889999999999999998863 2222 34777778888888999999999999887
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-19 Score=172.87 Aligned_cols=307 Identities=10% Similarity=-0.024 Sum_probs=198.3
Q ss_pred HHHhcCCHHHHHH-HHHHHHHCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 040279 237 GFCCAGNWEEVNG-LFIEMLDLGPR---PNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVG 312 (626)
Q Consensus 237 ~~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 312 (626)
++...|++++|.+ .+++....... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445566666666 55544432211 123455566666666666666666666666653 234555666666666666
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 040279 313 RIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFD 392 (626)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 392 (626)
++++|...|+++.+.. +.+..++..+..++...|++++|+..++++...... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 6666666666666553 224555666666666666666666666666654211 11111111000 00
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC
Q 040279 393 EMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEF-GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP 471 (626)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (626)
. ..+. ..+.. +..+...|++++|...++.+....... +..++..+...+...|++++|+..++++.+.. +.
T Consensus 178 -~----~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0000 01112 222337889999999999888664221 57888899999999999999999999988752 33
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-------
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD------- 544 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------- 544 (626)
+..+|..++.++...|++++|.+.++++.+.. +.+..++..++.+|.+.|++++|...++++++ +.|+
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~ 324 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN----MQRKSRGPRGE 324 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHHTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCCCcccc
Confidence 57889999999999999999999999998864 55678899999999999999999999999987 4442
Q ss_pred -----HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 545 -----DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 545 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..+|..++.++...|++++|..++++.+
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 5789999999999999999999988654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-15 Score=157.21 Aligned_cols=360 Identities=13% Similarity=0.076 Sum_probs=204.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH---------------------------H
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL---------------------------C 204 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------~ 204 (626)
+.--...+++|...|.+.+|+++++++...+.. ...+...-+.++.+. .
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~----fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSV----FSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAI 1060 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCc----ccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHH
Confidence 334456677888888888888888888743310 112333333344443 3
Q ss_pred hcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 040279 205 KEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANG 284 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 284 (626)
..|.+++|..+|++... .....+.++ -..+++++|.++.++. -+..+|..+..++...|++++|.+
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 44444444444444310 111111111 1444455555554433 134455566666666666666666
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040279 285 LLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGV 364 (626)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 364 (626)
.|.+. -|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.+++++...+ +.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---
Confidence 65442 244555556666666666666666666555543 2222233355566666555532222 11
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 040279 365 RQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCL 444 (626)
Q Consensus 365 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 444 (626)
.++...+..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.++.. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 123444555666666666666666666653 24566666666666666666666544 244566666
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC
Q 040279 445 IDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ--NN 522 (626)
Q Consensus 445 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g 522 (626)
..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++...... +-+...|+.+...|.+ .+
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 666666666666666554322 355666788888888888999998888877654 3344566666666654 44
Q ss_pred CHHHHHHHHHHhhcCCCCCCC------CHHHHHHHHHHHHccCCHhHHHHHHH
Q 040279 523 KTSKVVELLHKMAEPERNLVP------DDTTFSIVVDLLAKDEKYHECSAVSK 569 (626)
Q Consensus 523 ~~~~a~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~ 569 (626)
+..++.++|..-.. ++| +...|..+.-.|.+.|+++.|...+-
T Consensus 1331 klmEhlk~f~~rin----i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1331 KMREHLELFWSRVN----IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHHHHHHhcc----cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55666666665544 444 35668888888999999998885443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-15 Score=156.71 Aligned_cols=420 Identities=10% Similarity=0.063 Sum_probs=275.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGL--LPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD 151 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (626)
++.--...+.+|...|.+.+|+++++++...+- .-+....+.++. +..+. +..+.....++....
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~-------tAIka-D~~Rv~eyI~kLd~~----- 1050 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLIL-------TAIKA-DRTRVMEYINRLDNY----- 1050 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHH-------HHHHh-ChhhHHHHHHHhhhc-----
Confidence 344445566777788888888888888873311 011122222221 22222 333444444433211
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchH
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVC 231 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (626)
....+...+...|.+++|..+|++... .....+.++ ...+++++|.++.++.. +..+|
T Consensus 1051 --d~~eIA~Iai~lglyEEAf~IYkKa~~-----------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vW 1108 (1630)
T 1xi4_A 1051 --DAPDIANIAISNELFEEAFAIFRKFDV-----------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVW 1108 (1630)
T ss_pred --cHHHHHHHHHhCCCHHHHHHHHHHcCC-----------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHH
Confidence 133467777788888888888888631 122223332 26678888888887652 46788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLV 311 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 311 (626)
..+..++...|++++|++.|.+. -|...|..++..+.+.|++++|.+.+...++.. +++...+.++.+|.+.
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh
Confidence 88888888888888888888553 266778888888888888888888888877764 3433444578888888
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 040279 312 GRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLF 391 (626)
Q Consensus 312 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (626)
++++....+. + .++...|..+...|...|++++|..+|..+ ..|..+...+.+.|+++.|.+.+
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 8877533332 2 245566777888888888888888888875 36788888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC
Q 040279 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP 471 (626)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (626)
++.. +..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-
T Consensus 1245 rKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-ra 1312 (1630)
T 1xi4_A 1245 RKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RA 1312 (1630)
T ss_pred HHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hh
Confidence 8763 5577888888888888888888766542 3456667788888888888888888888777643 33
Q ss_pred CHhHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHH-------------
Q 040279 472 TVVTYSIMIHGLCRK--GKLEKANDFLLYMEKNGCAP------NVVTFNTLMHGFLQNNKTSKVVEL------------- 530 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~------------- 530 (626)
+...|..+...|++. ++..++.+.|..-. +++| +...|..+...|.+.|+++.|...
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~ 1390 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 1390 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHH
Confidence 455676666666664 23334444443222 2222 456788888888888888888732
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHHccC---------------CHhHHHHHHHH
Q 040279 531 LHKMAEPERNLVPDDTTFSIVVDLLAKDE---------------KYHECSAVSKS 570 (626)
Q Consensus 531 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~ 570 (626)
|+..+. -..+.+.|...+..|...+ +++++.+++++
T Consensus 1391 Fk~~i~----kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1391 FKDIIT----KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHHHhc----ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 222222 2336677777777776666 77777777663
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-18 Score=166.14 Aligned_cols=309 Identities=10% Similarity=-0.094 Sum_probs=220.1
Q ss_pred HHHhcCCcchHHH-HHHHHhhCCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 040279 202 SLCKEGLVDKAKE-LFLEMKGRGI---NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGG 277 (626)
Q Consensus 202 ~~~~~g~~~~A~~-~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (626)
++...|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++++..+. +..++..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCc
Confidence 5667799999998 8887665421 113567889999999999999999999999987543 7788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 040279 278 KINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYR 357 (626)
Q Consensus 278 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 357 (626)
++++|...++++.+.. +.+..++..+...+...|++++|...++++...... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 9999999999999875 447788999999999999999999999999987432 22222211100 00
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 040279 358 QIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVE-PDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEF 436 (626)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 436 (626)
. .. ....+..+...+ ..|++++|...++++.+.... ++..++..+...+...|++++|...++.+.... +.
T Consensus 178 -~----~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 00 011111222223 677888888888887764311 146777888888888888888888888877654 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN--------- 507 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------- 507 (626)
+...+..+...+...|++++|...|+++.+.. +.+..++..++.+|.+.|++++|.+.|+++.+.. +.+
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 327 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGA 327 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccc
Confidence 67788888888888899999998888887742 3357788888889999999999999998887642 112
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 508 --VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 508 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..+|..+..+|...|++++|..++++.++
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 57888899999999999999888775543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-18 Score=168.32 Aligned_cols=263 Identities=8% Similarity=-0.044 Sum_probs=164.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 040279 301 YNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQ 380 (626)
Q Consensus 301 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (626)
+..+...+.+.|++++|...|+++.+... .+...+..+..++...|++++|+..|+++.+.. +.+...+..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 33333444444444444444444443321 133344444444444444444444444444431 1233444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHH
Q 040279 381 AGQAGYAQKLFDEMKLYNV---------EPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFE-FGIEIFNCLIDGLCK 450 (626)
Q Consensus 381 ~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 450 (626)
.|++++|...++++.+... ......+..+...+...|++++|...++++...... .+..++..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 4444444444444443210 001223444567788888899999999888766422 167888888899999
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
.|++++|+..|+++.+.. +.+..+|..++.+|...|++++|++.|+++.+.. +.+..++..++.+|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999988752 3467889999999999999999999999998863 44578888999999999999999999
Q ss_pred HHHhhcCCCCCCCC-------------HHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 531 LHKMAEPERNLVPD-------------DTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 531 ~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
++++++ +.|+ ...|..+..++...|+.+.+.+..++.
T Consensus 304 ~~~al~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 304 FLTALS----LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHH----HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHH----hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999877 3333 567889999999999999888877663
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-18 Score=161.93 Aligned_cols=381 Identities=13% Similarity=0.065 Sum_probs=176.8
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC
Q 040279 128 CVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG 207 (626)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (626)
.+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------------CCHHHHHHHHHHHHhCC
Confidence 35678999999999983 3359999999999999999999999763 45668999999999999
Q ss_pred CcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040279 208 LVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLE 287 (626)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 287 (626)
++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877764 4567889999999999999999988884 3577799999999999999999999999
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040279 288 LMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT 367 (626)
Q Consensus 288 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 367 (626)
.+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hC
Confidence 76 37899999999999999999999988 278999999999999999999966555422 24
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCc------CHH
Q 040279 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN--NCVQEAVKLFHMLEMNKFEF------GIE 439 (626)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~ 439 (626)
+.....++..|.+.|++++|..+++...... +.....|+.+...|++- ++..+.++.|.. ..++++ +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 4445578899999999999999999998765 55667788777777764 344455555531 122222 467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCC-----------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKG-----------LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV 508 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (626)
.|..++-.|.+.++++.|....-+-...- -..+...|...+..|... ...++.-+.......+ |.
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~~l~~ll~~l~~~l--d~ 359 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRL--DH 359 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGC--CH
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcc--Cc
Confidence 88999999999999999887654432210 012344454555444421 1122222222221111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 509 VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
+..+..+.+.|+..-+..++..... .-+..+=..+-..|....+++.-..-++.
T Consensus 360 ---~r~v~~~~~~~~l~l~~~yl~~v~~-----~n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 360 ---TRAVNYFSKVKQLPLVKPYLRSVQN-----HNNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp ---HHHHHHHHHTTCTTTTHHHHHHHHT-----TCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2233344455555555555554443 11233334555667777777666555554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-17 Score=156.41 Aligned_cols=278 Identities=11% Similarity=-0.033 Sum_probs=194.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 040279 263 LLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILING 342 (626)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (626)
...+......+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445566666666777777777777766653 2355556666666666677777776666666653 2245556666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHhcCCHH
Q 040279 343 YCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNIL-ID-GLCKNNCVQ 420 (626)
Q Consensus 343 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~ 420 (626)
+...|++++|+..++++.+.... +...+..+... .|+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 66666666666666666654211 12222111000 0111111112 22 266778899
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 421 EAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYME 500 (626)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 500 (626)
+|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++|.+.++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998888665 4577888999999999999999999999988753 3357889999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-------------HHHHHHHHHHHHccCCHhHHHHH
Q 040279 501 KNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-------------DTTFSIVVDLLAKDEKYHECSAV 567 (626)
Q Consensus 501 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~ 567 (626)
+.. +.+..++..+..++...|++++|.+.++++.+ +.|+ ...+..++.++.+.|++++|.++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY----MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 864 55678899999999999999999999999987 4555 57788999999999999999999
Q ss_pred HHHHH
Q 040279 568 SKSSY 572 (626)
Q Consensus 568 ~~~~~ 572 (626)
++++.
T Consensus 309 ~~~~l 313 (327)
T 3cv0_A 309 YAQNV 313 (327)
T ss_dssp TTCCS
T ss_pred HHHHH
Confidence 98764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-16 Score=158.82 Aligned_cols=363 Identities=11% Similarity=-0.034 Sum_probs=237.4
Q ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC-----C---CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 040279 190 KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR-----G---INPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLG--- 258 (626)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--- 258 (626)
+.....|+.|...+...|++++|++.|++..+. + -+....+|+.+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344667899999999999999999999887542 1 12235678999999999999999999998876521
Q ss_pred ---CC-CChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHH---HHhcCChHHHHHHHHHHHhcCC
Q 040279 259 ---PR-PNLLTFNVMIDCLCK--GGKINEANGLLELMIQRGLNPDRFTYNSLMDG---YCLVGRIDTAREIFLSMHSKGC 329 (626)
Q Consensus 259 ---~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~ 329 (626)
.. ....++.....++.. .+++++|...|++..+... -+...+..+..+ +...++.++|++.+++..+...
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 01 123455555555544 4579999999999988742 244455444444 3456788899999998887742
Q ss_pred CCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 040279 330 KHTVVSYNILINGYCK----ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLST 405 (626)
Q Consensus 330 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 405 (626)
.+...+..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+.. +.+..+
T Consensus 207 -~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 -DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp -SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred -cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 255566655555544 467889999999988763 4467788889999999999999999999998753 345556
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 406 YNILIDGLCKN-------------------NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 406 ~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
+..+..+|... +..++|...++...... +.+...+..+...+...|++++|+..|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666555321 23456667776666544 44566677778888888888888888888776
Q ss_pred CCCCCCH--hHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC
Q 040279 467 KGLVPTV--VTYSIMIH-GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP 543 (626)
Q Consensus 467 ~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 543 (626)
....+.. ..+..+.. .....|++++|++.|++..+. .|+...... ....+.+++++.++ ..|
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~----~~p 427 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLS----KNG 427 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHH----HCC
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHH----hCC
Confidence 4322221 12223322 234567888888888888774 444332221 22344555666655 445
Q ss_pred -CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 544 -DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 544 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+..++..++.+|...|++++|.+.|++++
T Consensus 428 ~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 428 ADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp -CTTHHHHHHHHHHHHHHCC----------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778888888888888888888888875
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-16 Score=158.56 Aligned_cols=369 Identities=11% Similarity=-0.053 Sum_probs=251.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC-----C
Q 040279 151 DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYE--NGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR-----G 223 (626)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 223 (626)
....|+.+...+...|++++|++.|++.++.... .....+....+|..+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567899999999999999999999987652100 00002345678999999999999999999999887642 1
Q ss_pred -CC-CCcchHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCC
Q 040279 224 -IN-PAVVVCTTLIHGFCC--AGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDC---LCKGGKINEANGLLELMIQRGLNP 296 (626)
Q Consensus 224 -~~-~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 296 (626)
.. ....++..+..++.. .+++++|++.|++.++..+. +...+..+..+ +...++.++|+..+++..+.+ +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 01 123456665555554 45799999999999986543 45555555444 345677888999999888764 33
Q ss_pred CHhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH
Q 040279 297 DRFTYNSLMDGYCL----VGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYN 372 (626)
Q Consensus 297 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 372 (626)
+...+..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|+..++++.+.. +.+...+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55555555544444 467889999999988875 3367788899999999999999999999999863 33566666
Q ss_pred HHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 373 TLLSGLFQA-------------------GQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNK 433 (626)
Q Consensus 373 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 433 (626)
.+...|... +..+.|...++...+.. +.+...+..+...+...|++++|...|++.....
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 666555332 23567777888776643 3445678888999999999999999999988765
Q ss_pred CCcCHH--HHHHHHH-HHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 040279 434 FEFGIE--IFNCLID-GLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVT 510 (626)
Q Consensus 434 ~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 510 (626)
..+... .+..+.. .....|++++|+..|++..+. .|+...... ....+.++++...+.+ +.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHH
Confidence 433221 2333332 234679999999999999874 455433222 2344556666666654 667889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 511 FNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|..++.+|...|++++|++.|+++++
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999998
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-17 Score=151.76 Aligned_cols=273 Identities=11% Similarity=0.077 Sum_probs=183.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 040279 272 CLCKGGKINEANGLLELMIQRGLNPDR--FTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNV 349 (626)
Q Consensus 272 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (626)
-....|++..|+..++..... .|+. .....+..+|...|+++.|+..++.. .+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 344567777777766655433 2222 23345566777777777777655431 234556667777777777777
Q ss_pred HHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 350 EEAMSLYRQIISNGV-RQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHM 428 (626)
Q Consensus 350 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (626)
++|++.++++...+. +.+...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888877776653 33445556666777778888888877776 35666777777888888888888888887
Q ss_pred HHHCCCCcCHHH---HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 429 LEMNKFEFGIEI---FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCA 505 (626)
Q Consensus 429 ~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (626)
+.... |+... ...++..+...|++++|..+|+++.+. .+.+...|+.++.++.+.|++++|.+.++++.+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 77653 23211 112233344457888888888888876 34567788888888888888888888888888764 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 040279 506 PNVVTFNTLMHGFLQNNKTSK-VVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAV 567 (626)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 567 (626)
.+..++..++..+...|+.++ +.++++++.+ +.|+..... +...+.+.++++..-
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~----~~P~~~~~~---d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD----AHRSHPFIK---EYRAKENDFDRLVLQ 287 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----HCTTCHHHH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCCCChHHH---HHHHHHHHHHHHHHH
Confidence 567788888888888888865 5678888887 777654432 234445555555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-17 Score=158.66 Aligned_cols=269 Identities=10% Similarity=-0.070 Sum_probs=133.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040279 228 VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDG 307 (626)
Q Consensus 228 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 307 (626)
...+..+...+.+.|++++|+..|+++++..+. +..++..+...+...|++++|...|+++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344555666666666666666666666554322 45556666666666666666666666665542 2234555555566
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCC---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040279 308 YCLVGRIDTAREIFLSMHSKGCKH---------TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGL 378 (626)
Q Consensus 308 ~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (626)
|...|++++|...++++.+..... ....+..+...+...|++++|+..++++.+.....
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------ 210 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM------------ 210 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS------------
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc------------
Confidence 666666666666666655532100 01111222344444444455555444444431110
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 040279 379 FQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAW 458 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 458 (626)
++..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|+
T Consensus 211 ----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 211 ----------------------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 034444444444555555555555555444332 334445555555555555555555
Q ss_pred HHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHH
Q 040279 459 ELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC-----------APNVVTFNTLMHGFLQNNKTSKV 527 (626)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~g~~~~a 527 (626)
..|+++.+.. +.+..++..++.+|...|++++|.+.|+++.+... ..+...|..+..++...|+.+.+
T Consensus 268 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 268 EAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 5555555431 12345555555555555666666555555554210 00244566666666666666666
Q ss_pred HHHHHHh
Q 040279 528 VELLHKM 534 (626)
Q Consensus 528 ~~~~~~~ 534 (626)
....++.
T Consensus 347 ~~~~~~~ 353 (365)
T 4eqf_A 347 QAANLGD 353 (365)
T ss_dssp HHHHTTC
T ss_pred HHHHHhh
Confidence 6665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-16 Score=150.28 Aligned_cols=345 Identities=14% Similarity=0.023 Sum_probs=154.6
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
|++++|.++++++ +. +.+|..|+.++.+.|++++|++.|.+. +|...+..++ ..+...|++
T Consensus 17 ~~ld~A~~fae~~----~~--~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~-------~~ae~~g~~ 77 (449)
T 1b89_A 17 GNLDRAYEFAERC----NE--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVV-------QAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC----CC--hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHH-------HHHHhCCCH
Confidence 4799999999998 33 358999999999999999999999754 4555676665 456678999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHH
Q 040279 134 KEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAK 213 (626)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 213 (626)
++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|.
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------------CC----------------CTTTHH
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999988877764 4567888999999999999999887774 245569999999999999999999
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040279 214 ELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRG 293 (626)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 293 (626)
..|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 143 ~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~----- 202 (449)
T 1b89_A 143 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH----- 202 (449)
T ss_dssp HHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----
T ss_pred HHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----
Confidence 999976 47999999999999999999999988 2788999999999999999999665443
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC------
Q 040279 294 LNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN-GVRQ------ 366 (626)
Q Consensus 294 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~------ 366 (626)
+...+.....++..|.+.|.+++|..+++...... +.....|+-+.-+|++- ++++.++.++..... +++|
T Consensus 203 L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~ 280 (449)
T 1b89_A 203 IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 280 (449)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 22344445578889999999999999999988765 34566777777777763 444444444433221 1222
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+...|..+.-.|...++++.|... |.++ +++..-...+.+...+..+.+--.+...-..+. .+...+.|+.
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~ 351 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLM 351 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 456677777778888888877663 3332 222222222333334444444333333322211 2233555555
Q ss_pred HHHHcCCHHHHHHHHHh
Q 040279 447 GLCKAGRLDNAWELFHK 463 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~ 463 (626)
++...=+...+..+|++
T Consensus 352 ~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 352 VLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHGGGCCHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHH
Confidence 55544455555444443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=152.99 Aligned_cols=282 Identities=10% Similarity=-0.087 Sum_probs=208.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040279 227 AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMD 306 (626)
Q Consensus 227 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 306 (626)
+...+..+...+...|++++|..+|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 4567788889999999999999999999887543 77888899999999999999999999999874 446778889999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHHcCCH
Q 040279 307 GYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLS--GLFQAGQA 384 (626)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 384 (626)
.+...|++++|.+.++++.+.... +...+..+.... ++......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999999987432 333333321110 11111112212 25556677
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 040279 385 GYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKL 464 (626)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 464 (626)
++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777776543 3356677777777778888888888887776554 456777888888888888888888888888
Q ss_pred ccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040279 465 PQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP-----------NVVTFNTLMHGFLQNNKTSKVVELLHK 533 (626)
Q Consensus 465 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 533 (626)
.+.. +.+..++..++.++...|++++|.+.++++.+..... +..++..+..++...|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7742 3357788888888889999999999998887753111 366888888899999999999988887
Q ss_pred hhc
Q 040279 534 MAE 536 (626)
Q Consensus 534 ~~~ 536 (626)
.++
T Consensus 312 ~l~ 314 (327)
T 3cv0_A 312 NVE 314 (327)
T ss_dssp CSH
T ss_pred HHH
Confidence 654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-16 Score=148.74 Aligned_cols=251 Identities=12% Similarity=0.047 Sum_probs=201.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 040279 305 MDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQA 384 (626)
Q Consensus 305 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (626)
++-....|++..|+..++................+.++|...|+++.|+..++.. .+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 3445678999999999887655422211335566788999999999999877552 355677888888899999999
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 040279 385 GYAQKLFDEMKLYNVEP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHK 463 (626)
Q Consensus 385 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (626)
++|.+.++++...+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998766444 556677777899999999999999986 56788899999999999999999999999
Q ss_pred cccCCCCCCHhHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 040279 464 LPQKGLVPTVVTY---SIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERN 540 (626)
Q Consensus 464 ~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 540 (626)
+.+. .|+.... ...+..+...|++++|..+|+++.+.. +.+...++.++.++.+.|++++|...++++++
T Consensus 156 ~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~---- 228 (291)
T 3mkr_A 156 MQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD---- 228 (291)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Confidence 9885 3553211 122334445689999999999999873 67888999999999999999999999999998
Q ss_pred CCC-CHHHHHHHHHHHHccCCHhH-HHHHHHHHH
Q 040279 541 LVP-DDTTFSIVVDLLAKDEKYHE-CSAVSKSSY 572 (626)
Q Consensus 541 ~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 572 (626)
..| +..++..++.++...|+.++ +.++++++.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 678 57889999999999999976 578888886
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-15 Score=152.87 Aligned_cols=337 Identities=14% Similarity=0.029 Sum_probs=192.0
Q ss_pred chHHHHHHHHhhCCCCCCcchHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH---H
Q 040279 210 DKAKELFLEMKGRGINPAVVVCTTLIHGFCCAG-----NWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKIN---E 281 (626)
Q Consensus 210 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~ 281 (626)
++|.+.|++..+. +...+..|...+...+ ++++|+..|++..+.|. ...+..+...|...+..+ +
T Consensus 55 ~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~ 127 (452)
T 3e4b_A 55 KQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVN 127 (452)
T ss_dssp --------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCC
T ss_pred HHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHH
Confidence 4555555444432 3334444444333332 45555555555555432 224444555554443322 2
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHH
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL---NVEEAMSLYRQ 358 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~ 358 (626)
+...+......| +......+...|...+.++.+......+...-...+...+..+...|...| +.++|+..|++
T Consensus 128 a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~ 204 (452)
T 3e4b_A 128 AQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEA 204 (452)
T ss_dssp HHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 333344443333 233444555566666644444333222222211223446667777777777 77777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHH
Q 040279 359 IISNGVRQTVITYNTLLSGLFQA----GQAGYAQKLFDEMKLYNVEPDLSTYNILIDG-L--CKNNCVQEAVKLFHMLEM 431 (626)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~ 431 (626)
..+.|. ++...+..+...|... +++++|...|++.. . -+...+..+... + ...+++++|...|++..+
T Consensus 205 aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 205 GVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 777653 2444445555555443 57778888887776 3 234455555555 3 357888888888888877
Q ss_pred CCCCcCHHHHHHHHHHHHHcC-----CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 040279 432 NKFEFGIEIFNCLIDGLCKAG-----RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR----KGKLEKANDFLLYMEKN 502 (626)
Q Consensus 432 ~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 502 (626)
.+ +...+..+...|. .| ++++|.++|++.. . -+...+..|...|.. ..++++|...|++..+.
T Consensus 280 ~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 280 AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 65 5666777777776 55 8899999999888 3 367777788877776 34899999999998887
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhhc
Q 040279 503 GCAPNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYRAC 575 (626)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 575 (626)
| +......|...|.. ..+..+|..+|+++.+ .|. ++.......+......++.++|.++.++.....
T Consensus 352 g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~--~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 352 G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA--QDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT--TCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 6 34456667776664 4588999999999987 442 222222222333345667888888888766553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-15 Score=146.99 Aligned_cols=346 Identities=11% Similarity=0.007 Sum_probs=224.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 040279 199 IIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNW---EEVNGLFIEMLDLGPRPNLLTFNVMIDCLCK 275 (626)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (626)
+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|...|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5566677788888888888887765 455666666777777777 8899988888754 55566667765555
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040279 276 GG-----KINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRI---DTAREIFLSMHSKGCKHTVVSYNILINGYCKIL 347 (626)
Q Consensus 276 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (626)
.+ ++++|...|++..+.|.. ..+..|...|...+.. ..+.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 54 678899999988887633 3566677777765543 34555555555554 4566777777787777
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHH
Q 040279 348 NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAG---QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN----NCVQ 420 (626)
Q Consensus 348 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 420 (626)
.++++......+.+.-...++..+..+...|...| +.++|...|++..+.| .++...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 54444433322222212224447778888888888 8889999999888876 55666556666666554 6889
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHH-H--HHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcC-----CHHHH
Q 040279 421 EAVKLFHMLEMNKFEFGIEIFNCLIDG-L--CKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKG-----KLEKA 492 (626)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A 492 (626)
+|..+|+... +-+...+..+... + ...+++++|+++|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999998877 3456666677666 3 46789999999999988765 6777888888877 45 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHc----cCCHhHH
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAK----DEKYHEC 564 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 564 (626)
.+.|++.. .| +...+..+...|.. ..++++|...|+++.+ .| +......++..|.. ..+.++|
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 99998887 33 66777777777766 3488999999999887 33 34566677777764 4588888
Q ss_pred HHHHHHHHhhc
Q 040279 565 SAVSKSSYRAC 575 (626)
Q Consensus 565 ~~~~~~~~~~~ 575 (626)
..+++.+...+
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 88888876544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-15 Score=134.28 Aligned_cols=198 Identities=15% Similarity=0.017 Sum_probs=137.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 040279 366 QTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLI 445 (626)
Q Consensus 366 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (626)
++...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344555666666666677777776666666543 3455566666666666777777777776666554 44556666666
Q ss_pred HHHHHc-----------CCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040279 446 DGLCKA-----------GRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTL 514 (626)
Q Consensus 446 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 514 (626)
.++... |++++|+..+++..+.. +.+...|..+..++...|++++|++.|+++.+.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 89999999999888752 2357788888899999999999999999998876 678888899
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 515 MHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..++...|++++|+..++++++ +.| +...+..++.++...|++++|.+.+++.+
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALE----QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999988 677 56778888999999999999999988864
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-14 Score=133.68 Aligned_cols=222 Identities=10% Similarity=0.012 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC----hhhHHHH
Q 040279 301 YNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVR--QT----VITYNTL 374 (626)
Q Consensus 301 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~l 374 (626)
+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|+..++++.+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444443 33444444444444444444444444444432100 01 2334444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 040279 375 LSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRL 454 (626)
Q Consensus 375 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 454 (626)
...+...|++++|...++++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 44444444444444444444432 1221 12233344444444444444332 22333444444444444445
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
++|...++++.+.. +.+..+|..++.++...|++++|.+.++++.+.. +.+...+..+..++...|++++|.+.++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55544444444421 1234444444444444455555555554444432 223444444444444445555554444444
Q ss_pred hc
Q 040279 535 AE 536 (626)
Q Consensus 535 ~~ 536 (626)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-14 Score=133.60 Aligned_cols=224 Identities=9% Similarity=0.024 Sum_probs=193.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNV--EPD----LSTY 406 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 406 (626)
...+..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|...+++..+... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888899999999999999999999886 6888999999999999999999999999876321 112 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 407 NILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 407 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
..+...+...|++++|...++...... |+. ..+...|++++|...++++.... +.+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 889999999999999999999988753 332 45667789999999999998752 23467888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 040279 487 GKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECS 565 (626)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 565 (626)
|++++|.+.++++.+.. +.+..++..++.++...|++++|...++++++ ..| +...+..++.++.+.|++++|.
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE----KDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999874 55788999999999999999999999999998 566 4788999999999999999999
Q ss_pred HHHHHHHh
Q 040279 566 AVSKSSYR 573 (626)
Q Consensus 566 ~~~~~~~~ 573 (626)
+.++++.+
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=130.79 Aligned_cols=200 Identities=15% Similarity=0.041 Sum_probs=126.6
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCc
Q 040279 149 RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAV 228 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 228 (626)
+++...+..+...+.+.|++++|+..|+++++.+ |.+...+..+...+.+.|++++|+..+++..+.. +.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 4556667777777777777777877777777765 5667777777777777777777777777777653 3345
Q ss_pred chHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040279 229 VVCTTLIHGFCCA-----------GNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD 297 (626)
Q Consensus 229 ~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 297 (626)
..+..+...+... |++++|+..|++.++..+. +...+..+...+...|++++|+..|++..+.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 6677777777777 7777777777777665333 45566666777777777777777777776665 46
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 298 RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQII 360 (626)
Q Consensus 298 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 360 (626)
...+..+..++...|++++|...|++..+... .+...+..+..++...|++++|+..+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66666666777777777777777777666532 245556666666666777777766666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.4e-14 Score=130.70 Aligned_cols=234 Identities=9% Similarity=-0.002 Sum_probs=182.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 040279 334 VSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPD--LSTYNILID 411 (626)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 411 (626)
..+......+...|++++|+..++++.+.. +.+...+..+...+...|++++|...+++..+....++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556677778888888888888887763 23455777778888888888888888888877321222 334778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
.+...|++++|...++...+.. +.+..++..+...|...|++++|...+++..+.. +.+...|..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888765 4567889999999999999999999999999862 3457788888834445569999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCCC------HHHHHHHHHHHHccCCHh
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNK---TSKVVELLHKMAEPERNLVPD------DTTFSIVVDLLAKDEKYH 562 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~ 562 (626)
|.+.++++.+.. +.+...+..+..++...|+ +++|...++++.+. ..-.|+ ...+..++..|...|+++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV-CAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH-HGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH-HhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999864 4457788888888888888 88899999998771 111143 257888999999999999
Q ss_pred HHHHHHHHHH
Q 040279 563 ECSAVSKSSY 572 (626)
Q Consensus 563 ~A~~~~~~~~ 572 (626)
+|.+.++++.
T Consensus 239 ~A~~~~~~al 248 (272)
T 3u4t_A 239 KADAAWKNIL 248 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999997
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-16 Score=161.26 Aligned_cols=166 Identities=15% Similarity=0.200 Sum_probs=133.8
Q ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHhh---CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 040279 190 KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG---RGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTF 266 (626)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 266 (626)
..-..+|+++|++|++.|++++|.++|++|.+ .|+.||..+||+||++|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34567899999999999999999999988764 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------hhhHHHH
Q 040279 267 NVMIDCLCKGGKI-NEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHT------VVSYNIL 339 (626)
Q Consensus 267 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l 339 (626)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. .+++.++++ ..+..|+ ..+...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999984 78999999999999999999999988655443 333444443 2233333 4455566
Q ss_pred HHHHHhcC---------ChHHHHHHHHHHH
Q 040279 340 INGYCKIL---------NVEEAMSLYRQII 360 (626)
Q Consensus 340 ~~~~~~~~---------~~~~A~~~~~~~~ 360 (626)
.+.|.+.+ ..++-.++|++-+
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 67776554 2455556665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-13 Score=123.99 Aligned_cols=221 Identities=11% Similarity=-0.070 Sum_probs=164.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQ----AGQAGYAQKLFDEMKLYNVEPDLSTYN 407 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 407 (626)
+...+..+...+...+++++|+..|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4555666666777777777777777777763 244566666777777 777777777777777654 556667
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhcccCCCCCCHhHHHHH
Q 040279 408 ILIDGLCK----NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK----AGRLDNAWELFHKLPQKGLVPTVVTYSIM 479 (626)
Q Consensus 408 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 479 (626)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888887777654 56677777777777 788888888888887754 56677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 040279 480 IHGLCR----KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAEPERNLVPDDTTFSIV 551 (626)
Q Consensus 480 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 551 (626)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...++++.+ ..| ...+..+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~----~~~-~~a~~~l 224 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE----LEN-GGGCFNL 224 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH----TTC-HHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh----CCC-HHHHHHH
Confidence 777777 788888888888888754 56677778888888 8888888888888887 333 6677788
Q ss_pred HHHHHc----cCCHhHHHHHHHHHH
Q 040279 552 VDLLAK----DEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~----~g~~~~A~~~~~~~~ 572 (626)
+.+|.. .|++++|.++++++.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHH
Confidence 888888 888888888888875
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-14 Score=131.27 Aligned_cols=247 Identities=12% Similarity=0.025 Sum_probs=141.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHH
Q 040279 301 YNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT--VITYNTLLSGL 378 (626)
Q Consensus 301 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~ 378 (626)
+......+...|++++|...|+++.+... .+...+..+..++...|++++|+..++++.+.+..++ ...+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 33444555555666666666666555432 1334555555566666666666666666655321111 12255556666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 040279 379 FQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAW 458 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 458 (626)
...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665532 2344566666666667777777777776665543 445555555552333445777777
Q ss_pred HHHHhcccCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 040279 459 ELFHKLPQKGLVPTVVTYSIMIHGLCRKGK---LEKANDFLLYMEKNG-CAPN------VVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~ 528 (626)
+.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..++..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777776642 2235566666667766666 666777777766531 1122 145666777777788888888
Q ss_pred HHHHHhhcCCCCCCCC-HHHHHHHHHHH
Q 040279 529 ELLHKMAEPERNLVPD-DTTFSIVVDLL 555 (626)
Q Consensus 529 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 555 (626)
+.++++++ +.|+ ......+....
T Consensus 242 ~~~~~al~----~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 242 AAWKNILA----LDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHH----HCTTCHHHHHHHC---
T ss_pred HHHHHHHh----cCccHHHHHHHhhhhh
Confidence 88888777 6664 44454444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.2e-16 Score=159.29 Aligned_cols=116 Identities=12% Similarity=0.204 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHH
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEM---NKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIM 479 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 479 (626)
..||+++|++|++.|++++|..+|+.|.+ .|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655442 245566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 480 IHGLCRKGK-LEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 480 ~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 666666555 355566666666666666666666555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-12 Score=121.53 Aligned_cols=221 Identities=11% Similarity=-0.080 Sum_probs=142.8
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHH
Q 040279 298 RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCK----ILNVEEAMSLYRQIISNGVRQTVITYNT 373 (626)
Q Consensus 298 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 373 (626)
...+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344455555555666666666666665552 244555555566666 666666666666666553 4555566
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 040279 374 LLSGLFQ----AGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK----NNCVQEAVKLFHMLEMNKFEFGIEIFNCLI 445 (626)
Q Consensus 374 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (626)
+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 6666666 666666666666666543 45556666666666 677777777777666654 445566666
Q ss_pred HHHHH----cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 446 DGLCK----AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR----KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 446 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 66666 677777777777776642 45666677777777 777777777777777753 25566677777
Q ss_pred HHh----cCCHHHHHHHHHHhhc
Q 040279 518 FLQ----NNKTSKVVELLHKMAE 536 (626)
Q Consensus 518 ~~~----~g~~~~a~~~~~~~~~ 536 (626)
|.. .+++++|.+.++++.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHH
Confidence 777 7777777777777776
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-11 Score=127.28 Aligned_cols=427 Identities=11% Similarity=0.014 Sum_probs=293.5
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC---cc
Q 040279 134 KEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL---VD 210 (626)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~ 210 (626)
.+-+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|++++..- |.....|...+....+.++ ++
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-------P~~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-------PLMANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTC--CCCHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhhCCcchHH
Confidence 34454556655554 5689999999999999999999999999999874 7778889988998888888 99
Q ss_pred hHHHHHHHHhhCC-CCCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-hhhHHHHHHHHHh---
Q 040279 211 KAKELFLEMKGRG-INPAVVVCTTLIHGFCCAGNW--------EEVNGLFIEMLD-LGP-RPN-LLTFNVMIDCLCK--- 275 (626)
Q Consensus 211 ~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~--- 275 (626)
.+.++|++..... .+|++..|...+......++. +...++|+..+. .|. .++ ...|...+.....
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999999998863 137888888887765554442 344577777654 354 443 4577777765432
Q ss_pred ------cCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-------------cCChHHHHHHHHHHHhc--CCC---C
Q 040279 276 ------GGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCL-------------VGRIDTAREIFLSMHSK--GCK---H 331 (626)
Q Consensus 276 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~~~~~--~~~---~ 331 (626)
.++++.+..+|++++......-..+|......-.. ..+++.|...+.++... ++. |
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 34567788999998864222112233221111101 12234455555443321 111 0
Q ss_pred C--------------------hhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 040279 332 T--------------------VVSYNILINGYCKIL-------NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQA 384 (626)
Q Consensus 332 ~--------------------~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (626)
. ...|...+..--..+ ..+.+..+|++++.. ++.....|...+..+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 123455554433322 124456788888876 455788888888888889999
Q ss_pred HHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------Cc------------CHHHHH
Q 040279 385 GYAQ-KLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKF---------EF------------GIEIFN 442 (626)
Q Consensus 385 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~------------~~~~~~ 442 (626)
++|. ++|+..... ++.+...+...+....+.|+++.|..+|+.+..... .| ...+|.
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8996 999999874 355666677788888899999999999998875310 12 234688
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK-GKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (626)
..+....+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+..++. .+.+...|...+......
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 88888888999999999999998751122344554444333344 4589999999999986 455677777888888889
Q ss_pred CCHHHHHHHHHHhhcCCCCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 522 NKTSKVVELLHKMAEPERNLVP--DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
|+.+.|..+|++++. ....+ ....|...+..-.+.|+.+.+.++.+++..
T Consensus 518 ~~~~~AR~lferal~--~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 518 NEESQVKSLFESSID--KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp TCHHHHHHHHHHHTT--TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998 22212 245688888888889999999999999974
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-14 Score=133.29 Aligned_cols=155 Identities=10% Similarity=-0.058 Sum_probs=73.4
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
+..+...|++++|+..|+++.+.. +.+..++..++..+...|++++|+..|+++++.. +.+..++..+...+
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------ccccHHHHHHHHHH
Confidence 344555555555555555555542 2244555555555555555555555555555543 33344555555555
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 283 (626)
...|++++|.+.|+++.+. .|+.......+..+...|++++|...+++...... ++...+ .++..+...++.++|.
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLM 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHH
Confidence 5555555555555555543 22332233333333444555555555544444321 122222 2333444444444455
Q ss_pred HHHHHHH
Q 040279 284 GLLELMI 290 (626)
Q Consensus 284 ~~~~~~~ 290 (626)
..++...
T Consensus 198 ~~~~~~~ 204 (275)
T 1xnf_A 198 ERLKADA 204 (275)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 5444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-14 Score=132.86 Aligned_cols=250 Identities=11% Similarity=0.007 Sum_probs=168.8
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 126 GLCVENRIKEATWLFKNMIAFGV---RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
.+...|++++|+..|+++.+... +.+..++..++..+...|++++|+..|+++...+ +.+..++..+...
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~ 86 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIY 86 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHH
Confidence 45567889999999999987632 1245678888899999999999999999988865 5677888888888
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEA 282 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 282 (626)
+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|...|+++.+.. |+.......+..+...|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A 163 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQA 163 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHH
Confidence 999999999999999888763 3356788888888888888888888888888753 3333344444455666888888
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 040279 283 NGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCK---HTVVSYNILINGYCKILNVEEAMSLYRQI 359 (626)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 359 (626)
...++...... +++...+ .++..+...++.++|...++........ .+...+..+...+...|++++|...|+++
T Consensus 164 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 164 KEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887766653 2233333 3556666677777777777776554211 01355666666666777777777777776
Q ss_pred HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 040279 360 ISNGVRQTVITYNTLLSGLFQAGQAGYAQKLF 391 (626)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 391 (626)
.+.. |+. +.....++...|++++|.+.+
T Consensus 242 l~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 6542 211 122233445555555555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-13 Score=131.74 Aligned_cols=248 Identities=12% Similarity=0.056 Sum_probs=177.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCC-HHHHHHHHHHHHHCCCCCCHh
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENR-IKEATWLFKNMIAFGVRPDVI 153 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~ 153 (626)
..+|+.+...+.+.|++++|+..|+++++. .|+....-..+ +..+...|+ +++|+..|+++++.. +.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~------g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~ 167 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFR------RVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHH------HHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHH------HHHHHHcccCHHHHHHHHHHHHHHC-CCCHH
Confidence 457888888888888899999988888876 56544332222 356677786 888888888888874 44677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHH
Q 040279 154 TYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTT 233 (626)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (626)
+|..+..++...|++++|+..|++++..+ +.+..+|..+..++.+.|++++|++.++++.+.. +-+...|+.
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~ 239 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQ 239 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 88888888888888888888888888876 6778888888888888888888888888888764 336678888
Q ss_pred HHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040279 234 LIHGFCC-AGNWEEV-----NGLFIEMLDLGPRPNLLTFNVMIDCLCKGG--KINEANGLLELMIQRGLNPDRFTYNSLM 305 (626)
Q Consensus 234 li~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll 305 (626)
+..++.. .|..++| ++.|++.+...+. +...|+.+...+...| ++++|...+..+ +. .+.+...+..+.
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La 316 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHH
Confidence 8888888 5554666 4777777776443 5667777777777776 577888777776 33 233556667777
Q ss_pred HHHHhcC---------ChHHHHHHHHHH-HhcCCCCChhhHHHHHHHH
Q 040279 306 DGYCLVG---------RIDTAREIFLSM-HSKGCKHTVVSYNILINGY 343 (626)
Q Consensus 306 ~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 343 (626)
.+|.+.| ..++|.++|+++ .+.+ +.....|..+...+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 7777653 247777777777 4442 11233444444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-13 Score=123.27 Aligned_cols=197 Identities=10% Similarity=0.011 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 040279 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGL 448 (626)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (626)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344555556666666666666666665542 3345566666666777777777777776666543 34566667777777
Q ss_pred HHcCCHHHHHHHHHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040279 449 CKAGRLDNAWELFHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKV 527 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 527 (626)
...|++++|.++++++.+.+..| +...+..++.++...|++++|.+.++++.+.. +.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776622233 35566777777777778888888777777653 34566777777777778888888
Q ss_pred HHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 528 VELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 528 ~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
...++++.+ ..| +...+..++.++...|++++|.++++++.
T Consensus 195 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 195 RQYYDLFAQ----GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHT----TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 888887776 444 45667777777777888888888877775
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-11 Score=124.22 Aligned_cols=443 Identities=11% Similarity=0.047 Sum_probs=267.9
Q ss_pred HHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHhhhhhhhhhhhcCC--
Q 040279 56 LNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPD-FLTLNILINCFGNKERGLCVENR-- 132 (626)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~l~~~~~~~~~-- 132 (626)
.++.+..|++.+..+|. |..+|..++..+.+.+.++.+..+|++++.. .|. ...|...+. .-.+.++
T Consensus 48 ~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~-------~E~~~~~~~ 117 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLS-------LEFDKMEEL 117 (679)
T ss_dssp CSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH-------HHHTC--CC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHH-------HHHhhCCcc
Confidence 55667778888888775 9999999999999999999999999999976 443 344444442 3455677
Q ss_pred -HHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCh--------HHHHHHHHHHHhC-CCCCCccccccHHHHHHHHH
Q 040279 133 -IKEATWLFKNMIAFG-VRPDVITYGTLINGFCRTGNL--------SVALRLHKKMVSG-DYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 133 -~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 201 (626)
++.+..+|++.+... .+|+...|...+....+.++. +...++|+.++.. |. -.+.+...|...+.
T Consensus 118 ~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~----~d~~s~~iW~~Yi~ 193 (679)
T 4e6h_A 118 DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAI----FEPKSIQFWNEYLH 193 (679)
T ss_dssp CHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTT----TCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCc----ccccchHHHHHHHH
Confidence 999999999999873 138888999888877665554 3445788887653 20 00234567777776
Q ss_pred HHHh---------cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHH-------------hcCCHHHHHHHHHHHHHC--
Q 040279 202 SLCK---------EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFC-------------CAGNWEEVNGLFIEMLDL-- 257 (626)
Q Consensus 202 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-------------~~~~~~~a~~~~~~~~~~-- 257 (626)
.... .++++.+..+|++........-..+|......-. ...+++.|...+.++...
T Consensus 194 f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~ 273 (679)
T 4e6h_A 194 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK 273 (679)
T ss_dssp HHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 6543 3457789999999886311111123322111100 112234445555443211
Q ss_pred CCC---CC--------------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040279 258 GPR---PN--------------------LLTFNVMIDCLCKGG-------KINEANGLLELMIQRGLNPDRFTYNSLMDG 307 (626)
Q Consensus 258 ~~~---~~--------------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 307 (626)
++. |. ...|...+..--..+ ..+.+..+|++.+.. ++-....|...+..
T Consensus 274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~ 352 (679)
T 4e6h_A 274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANY 352 (679)
T ss_dssp TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHH
T ss_pred hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 110 00 123334443322221 123345567776665 34466667666776
Q ss_pred HHhcCChHHHH-HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC---------CCC----------
Q 040279 308 YCLVGRIDTAR-EIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGV---------RQT---------- 367 (626)
Q Consensus 308 ~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~---------- 367 (626)
+...|+.+.|. .+|++.... ++.+...|-..+....+.|+++.|.++|+++..... .|+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 77777777775 778777764 233555566667777777888888888877765310 021
Q ss_pred --hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 040279 368 --VITYNTLLSGLFQAGQAGYAQKLFDEMKLY-NVEPDLSTYNILIDGLCKN-NCVQEAVKLFHMLEMNKFEFGIEIFNC 443 (626)
Q Consensus 368 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~ 443 (626)
...|...+....+.|..+.|..+|....+. + ......|...+..-.+. ++.+.|.++|+...+. .+.+...+..
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~ 509 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 234666666666677777888888777664 2 11222333222222233 3477888888776654 2445666667
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVP--TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
.++.....|+.+.|..+|++.......+ ....|...+..-...|+.+.+.++.+++.+. .|+......+..-|
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 7777777778888888888777653211 2456777777777778888888888777775 34444444444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-13 Score=123.44 Aligned_cols=197 Identities=13% Similarity=0.018 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040279 336 YNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCK 415 (626)
Q Consensus 336 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (626)
+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3344444444444444444444444431 2233444444444555555555555555544432 2234444555555555
Q ss_pred cCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 040279 416 NNCVQEAVKLFHMLEMNKF-EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKAND 494 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 494 (626)
.|++++|..+++.+...+. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544111 2234445555555666666666666666655532 2235555666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 495 FLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.++++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666665542 33455555566666666666666666666665
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.9e-14 Score=127.68 Aligned_cols=199 Identities=13% Similarity=0.093 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG 412 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (626)
...+..+...+...|++++|+..|+++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 334444555555556666666666655553 22244555555555566666666666666555432 2344555555566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040279 413 LCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKA 492 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 492 (626)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666555443 3345555666666666666666666666665531 22455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 493 NDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+.++++.+.. +.+..++..+..++...|++++|.+.++++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 66666666542 33455666666666666666666666666665
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-13 Score=131.03 Aligned_cols=246 Identities=9% Similarity=0.002 Sum_probs=152.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 040279 300 TYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILN-VEEAMSLYRQIISNGVRQTVITYNTLLSGL 378 (626)
Q Consensus 300 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (626)
.|..+...+...|++++|+..++++.+.... +...|+.+..++...|+ +++|+..|+++++.. +.+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444555555666666666666666655322 45556666666666664 666666666666652 22555666666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH-cCCHHHH
Q 040279 379 FQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK-AGRLDNA 457 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A 457 (626)
...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++.+.. +.+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 66666666666666666543 3355566666666666777777777777666554 4456666666666666 4444555
Q ss_pred -----HHHHHhcccCCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------
Q 040279 458 -----WELFHKLPQKGLVPTVVTYSIMIHGLCRKG--KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN-------- 522 (626)
Q Consensus 458 -----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 522 (626)
+..+++++... +-+...|+.+..++...| ++++|++.+.++ +. .+.+...+..++.+|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 46677766642 224667777777777766 577777777776 33 2445567777777777653
Q ss_pred -CHHHHHHHHHHh-hcCCCCCCCC-HHHHHHHHHHHH
Q 040279 523 -KTSKVVELLHKM-AEPERNLVPD-DTTFSIVVDLLA 556 (626)
Q Consensus 523 -~~~~a~~~~~~~-~~~~~~~~p~-~~~~~~l~~~~~ 556 (626)
..++|+++++++ .+ +.|. ...|..++..+.
T Consensus 332 ~~~~~A~~~~~~l~~~----~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEILAKE----KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHT----TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hCchhHHHHHHHHHHHH
Confidence 247788888887 66 6674 445555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=9e-13 Score=119.20 Aligned_cols=200 Identities=10% Similarity=-0.057 Sum_probs=106.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDG 412 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (626)
...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3344445555555555555555555555432 2234445555555555555555555555554432 2344455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHH
Q 040279 413 LCKN-NCVQEAVKLFHMLEMNKF-EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLE 490 (626)
Q Consensus 413 ~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 490 (626)
+... |++++|...++.+...+. +.+...+..+..++...|++++|...++++.+.. +.+...+..++.++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 666666666655554111 1224455555555666666666666666655532 123555556666666666666
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 491 KANDFLLYMEKNGCA-PNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+|.+.++++.+.. + .+...+..+...+...|+.+++..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666665542 2 3444555555555566666666666666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=126.10 Aligned_cols=198 Identities=11% Similarity=0.033 Sum_probs=158.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44567777888899999999999999998753 4567888899999999999999999999988765 557888999999
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK 526 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 526 (626)
.+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998853 3467889999999999999999999999998864 5578889999999999999999
Q ss_pred HHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 527 VVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 527 a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
|...++++.+ ..| +..++..++.++...|++++|.+.++++.
T Consensus 178 A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 178 ALSQFAAVTE----QDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHH----hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999988 556 57889999999999999999999999996
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-12 Score=118.36 Aligned_cols=199 Identities=11% Similarity=-0.009 Sum_probs=169.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45677888889999999999999999988753 4567788889999999999999999999888764 557788899999
Q ss_pred HHHHc-CCHHHHHHHHHhcccCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040279 447 GLCKA-GRLDNAWELFHKLPQKGLVPT-VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT 524 (626)
Q Consensus 447 ~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (626)
.+... |++++|...++++.+.+..|+ ...+..++.++...|++++|.+.++++.+.. +.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999987322333 6778889999999999999999999998864 44678889999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 525 SKVVELLHKMAEPERNLVP--DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 525 ~~a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
++|...++++.+ ..| +...+..+...+...|+.++|..+++.+.
T Consensus 164 ~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQS----RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHH----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999987 445 56677777888899999999999999985
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=138.41 Aligned_cols=272 Identities=11% Similarity=0.027 Sum_probs=163.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhc----C-CCCChhhH
Q 040279 266 FNVMIDCLCKGGKINEANGLLELMIQRGLNPDR----FTYNSLMDGYCLVGRIDTAREIFLSMHSK----G-CKHTVVSY 336 (626)
Q Consensus 266 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~ 336 (626)
+..+...+...|++++|...++++.+.+.. +. ..+..+...+...|++++|...+++..+. + .+.....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334445555566666666666665554211 21 23444555555555555555555554432 0 01112333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh
Q 040279 337 NILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYN-VEPDLSTYNILIDGLCK 415 (626)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 415 (626)
..+...|...|++++|+..++++.+.. ...+ .+....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433210 0000 01112344555555666
Q ss_pred cCC-----------------HHHHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC-CC
Q 040279 416 NNC-----------------VQEAVKLFHMLEMN----K-FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV-PT 472 (626)
Q Consensus 416 ~g~-----------------~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~ 472 (626)
.|+ +++|...+++.... + .+.....+..+...+...|++++|...+++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 66666666544321 1 1122346777788888888888888888887663110 12
Q ss_pred ----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC
Q 040279 473 ----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC--A---PNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP 543 (626)
Q Consensus 473 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 543 (626)
..++..+..+|...|++++|.+.+++..+... . ....++..+...+...|++++|..+++++++ +.+
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~ 334 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA----IAQ 334 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHH
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHH
Confidence 23678888899999999999999988876310 0 1145778888899999999999999999876 322
Q ss_pred -------CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 544 -------DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 544 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
...++..++.+|...|++++|.+.++++.+
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 134788899999999999999999999864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-13 Score=133.69 Aligned_cols=279 Identities=15% Similarity=0.065 Sum_probs=172.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHH
Q 040279 41 LNEFLHENCKSGIINLNEARYFFGYMTHMQPSPP---ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGL-LPDFLTLNIL 116 (626)
Q Consensus 41 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l 116 (626)
+......+...| ++++|...|++++...+... ..+|..++..+...|++++|+..++++..... ..+.. ..
T Consensus 12 l~~~g~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~ 86 (406)
T 3sf4_A 12 LALEGERLCKSG--DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL---GE 86 (406)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HH
T ss_pred HHHHHHHHHHhc--cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH---HH
Confidence 334445555555 99999999999998866521 35788899999999999999999998764310 11111 11
Q ss_pred HHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhcCC--------------------hHHH
Q 040279 117 INCFGNKERGLCVENRIKEATWLFKNMIAFGVR-PD----VITYGTLINGFCRTGN--------------------LSVA 171 (626)
Q Consensus 117 l~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A 171 (626)
..++..++..+...|++++|+..+++....... ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 222334567889999999999999988764100 11 3478888999999999 8888
Q ss_pred HHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCC-CC----cchHHHHHHHHHhcCCHHH
Q 040279 172 LRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGIN-PA----VVVCTTLIHGFCCAGNWEE 246 (626)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~ 246 (626)
+..+++........+ ..+....++..+...+...|++++|.+.+++..+.... ++ ..++..+...|...|++++
T Consensus 167 ~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 167 VDFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 888887754310000 01223446677777777888888888877776543100 01 1256666677777777777
Q ss_pred HHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HhhHHHHHHHHHhcCChHH
Q 040279 247 VNGLFIEMLDLGPR-PN----LLTFNVMIDCLCKGGKINEANGLLELMIQRGLN-PD----RFTYNSLMDGYCLVGRIDT 316 (626)
Q Consensus 247 a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~ 316 (626)
|...+++..+.... .+ ..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777666542110 01 334555566666666666666666655442100 01 2234444455555555555
Q ss_pred HHHHHHHHH
Q 040279 317 AREIFLSMH 325 (626)
Q Consensus 317 a~~~~~~~~ 325 (626)
|...+++..
T Consensus 326 A~~~~~~al 334 (406)
T 3sf4_A 326 AMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-13 Score=135.12 Aligned_cols=241 Identities=13% Similarity=0.063 Sum_probs=154.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHH
Q 040279 44 FLHENCKSGIINLNEARYFFGYMTHMQPSPPI----SSFNLLFGAVAKNRHYDAVISFYRKLVSIGL-LPDFLTLNILIN 118 (626)
Q Consensus 44 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~ 118 (626)
....+...| ++++|+..|++++...+. +. .+|..++..+...|++++|+..++++++... ..+. .....
T Consensus 54 ~g~~~~~~g--~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~ 127 (411)
T 4a1s_A 54 EGERLCNAG--DCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR---LGEAK 127 (411)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHH
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc---hHHHH
Confidence 334445555 999999999999998665 43 5788999999999999999999998875310 1111 11222
Q ss_pred hhhhhhhhhhhcCCHHHHHHHHHHHHHCC-----CCCCHhHHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 040279 119 CFGNKERGLCVENRIKEATWLFKNMIAFG-----VRPDVITYGTLINGFCRTGN-----------------LSVALRLHK 176 (626)
Q Consensus 119 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 176 (626)
++..++..+...|++++|...+++..... .+....++..+...+...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 33345678899999999999999987641 11234578888999999999 888888888
Q ss_pred HHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCC-CC----cchHHHHHHHHHhcCCHHHHHHHH
Q 040279 177 KMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGIN-PA----VVVCTTLIHGFCCAGNWEEVNGLF 251 (626)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~ 251 (626)
+........+ ..+....++..+...+...|++++|++.+++..+.... .+ ..++..+...|...|++++|...+
T Consensus 208 ~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 208 ENLKLMRDLG-DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 7654210000 01223346667777777778888887777776543100 01 125566666666677777777666
Q ss_pred HHHHHCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040279 252 IEMLDLGPR-----PNLLTFNVMIDCLCKGGKINEANGLLELMIQ 291 (626)
Q Consensus 252 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 291 (626)
++..+.... ....++..+...+...|++++|...+++..+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 665542110 0123445555555566666666665555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-13 Score=133.78 Aligned_cols=281 Identities=13% Similarity=0.059 Sum_probs=160.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC-CC
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD----RFTYNSLMDGYCLVGRIDTAREIFLSMHSK----GCK-HT 332 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~ 332 (626)
....+......+...|++++|...++++.+.+.. + ...+..+...+...|++++|...+++.... +.. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3334455555666666666666666666655211 2 134445555566666666666666554332 100 01
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 333 VVSYNILINGYCKILNVEEAMSLYRQIISNGVR-QTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
..++..+...+...|++++|+..+++..+.... ++. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 233444444555555555555555544432000 000 001224444445
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHH----CC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 412 GLCKNNC--------------------VQEAVKLFHMLEM----NK-FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 412 ~~~~~g~--------------------~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
.+...|+ +++|...++.... .+ .+....++..+...+...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 5666655554332 11 111234566777778888888888888877765
Q ss_pred CCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 467 KGL-VPT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC-APN----VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 467 ~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
... .++ ..++..++.+|...|++++|...+++..+... .++ ..++..+...|...|++++|...++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 112 23677788888888888888888888765310 011 45677788888889999999998888876
Q ss_pred CCCCC--CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhh
Q 040279 537 PERNL--VP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYRA 574 (626)
Q Consensus 537 ~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 574 (626)
..... .+ ...++..++.+|...|++++|.+.++++...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 10000 11 1456778888888999999999999887643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-11 Score=118.13 Aligned_cols=247 Identities=9% Similarity=0.009 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------HcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040279 350 EEAMSLYRQIISNGVRQTVITYNTLLSGLF-------QAGQA-------GYAQKLFDEMKLYNVEPDLSTYNILIDGLCK 415 (626)
Q Consensus 350 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 415 (626)
++|+..|++++.. .+.+...|..++..+. ..|+. ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6777888888775 2446667777776665 34775 8899999998873123456678888888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHH-hcCCHHHHH
Q 040279 416 NNCVQEAVKLFHMLEMNKFEFGIE-IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLC-RKGKLEKAN 493 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~ 493 (626)
.|++++|..+|+++.+.. +.+.. +|..++..+.+.|++++|..+|+++.+.. +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988753 22344 78888999999999999999999998853 234555554444332 369999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-CCCC--CHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 494 DFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPER-NLVP--DDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 494 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
++|++..+.. +.+...|..++..+.+.|++++|..+|++++. . .+.| ....|..++..+.+.|+.++|..++++
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT--SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998863 44678889999999999999999999999998 3 2455 356788889999999999999999999
Q ss_pred HHhhccccccccCCchhhh-hhhheeccCCccchhccccCCCCCCch
Q 040279 571 SYRACLYVTIFQPSSLGSM-IGCTVRLMPQPEMSDTLGDDGDGNAGP 616 (626)
Q Consensus 571 ~~~~~~~~~~~~p~~~~~l-~~~~~~~~~~~~~~~~~~~~~p~~~~~ 616 (626)
+.. ..|+..... .+.+ .--.+++++.|+++..
T Consensus 267 a~~-------~~p~~~~~~~~~~~-------~~r~~~l~~~P~~~~~ 299 (308)
T 2ond_A 267 RFT-------AFREEYEGKETALL-------VDRYKFMDLYPCSASE 299 (308)
T ss_dssp HHH-------HTTTTTSSCHHHHH-------HTTTCBTTBCSSCHHH
T ss_pred HHH-------HcccccccchHHHH-------HHHHHhcccCCCCHHH
Confidence 863 344432111 1111 0113777899988643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-12 Score=114.77 Aligned_cols=164 Identities=13% Similarity=0.035 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHH
Q 040279 402 DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIH 481 (626)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (626)
+...|..+...|...|++++|+..|++..+.. |.+...+..+..+|...|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45567777777777777888877777777654 4566777777777888888888888877776642 234666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCC
Q 040279 482 GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEK 560 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 560 (626)
.+...++++.|.+.+.+..+.. +.+...+..+..++.+.|++++|++.|+++++ +.| +..++..++.+|.+.|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS----IKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH----hcchhhhHHHHHHHHHHHCCC
Confidence 7778888888888888877753 44566777777888888888888888888877 566 46777788888888888
Q ss_pred HhHHHHHHHHHH
Q 040279 561 YHECSAVSKSSY 572 (626)
Q Consensus 561 ~~~A~~~~~~~~ 572 (626)
+++|.+.|+++.
T Consensus 157 ~~~A~~~~~~al 168 (184)
T 3vtx_A 157 RDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-12 Score=127.76 Aligned_cols=230 Identities=10% Similarity=0.032 Sum_probs=169.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC--CCCHHHHH
Q 040279 339 LINGYCKILNVEEAMSLYRQIISN----GVRQ-TVITYNTLLSGLFQAGQAGYAQKLFDEMKLY----NV--EPDLSTYN 407 (626)
Q Consensus 339 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~ 407 (626)
....+...|++++|+..+++..+. +..+ ...++..+...|...|+++.|...+.+..+. +. .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666788888888888887753 1111 2356777788888888888888888887542 10 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC----CC-CCCHhHHH
Q 040279 408 ILIDGLCKNNCVQEAVKLFHMLEMN----KF-EFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK----GL-VPTVVTYS 477 (626)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 477 (626)
.+...|...|++++|...+++..+. +. +....++..+..+|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888889999999999999876632 11 111247888999999999999999999988762 22 33366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCC-CHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKN----GCAPNVVTFNTLMHGFLQNNK---TSKVVELLHKMAEPERNLVP-DDTTFS 549 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~p-~~~~~~ 549 (626)
.++.+|...|++++|.+.+++..+. +-+.....+..+...+...|+ .++|+.++++... .| ....+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-----~~~~~~~~~ 343 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-----YADLEDFAI 343 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-----HHHHHHHHH
Confidence 9999999999999999999988763 111122345667778888998 7888888887743 34 356788
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHh
Q 040279 550 IVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 550 ~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.++.+|...|++++|.+.++++..
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999864
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-13 Score=128.94 Aligned_cols=151 Identities=11% Similarity=0.013 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC-CCC----HhHHHHHHHHHHhcCC
Q 040279 419 VQEAVKLFHMLEMN----K-FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL-VPT----VVTYSIMIHGLCRKGK 488 (626)
Q Consensus 419 ~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~ 488 (626)
+++|...+++.... + .+.....+..+...+...|++++|...+++..+... .++ ..++..++..+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 66666666544321 1 112234677777888888888888888888765210 011 3367888889999999
Q ss_pred HHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---C----HHHHHHHHHHHH
Q 040279 489 LEKANDFLLYMEKNGC-APN----VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP---D----DTTFSIVVDLLA 556 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p---~----~~~~~~l~~~~~ 556 (626)
+++|.+.+++..+... ..+ ..++..+...+...|++++|...++++.+ +.| + ..++..++.++.
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA----IAQELKDRIGEGRACWSLGNAYT 314 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----HHHhcCCcHHHHHHHHHHHHHHH
Confidence 9999999998875310 111 45777888899999999999999999876 222 1 346788999999
Q ss_pred ccCCHhHHHHHHHHHHh
Q 040279 557 KDEKYHECSAVSKSSYR 573 (626)
Q Consensus 557 ~~g~~~~A~~~~~~~~~ 573 (626)
+.|++++|.+.++++.+
T Consensus 315 ~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHH
Confidence 99999999999999863
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-12 Score=110.81 Aligned_cols=171 Identities=10% Similarity=0.013 Sum_probs=120.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+...|..+...|...|++++|.+.|++..+.. +-+...+..+..++.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45566667777777777777777777766543 3355666677777777777777777777666544 445666666677
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK 526 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 526 (626)
.+...++++.|...+++..... +.+...+..+..++...|++++|++.|++..+.+ +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777776642 2356677777778888888888888888877753 4456677778888888888888
Q ss_pred HHHHHHHhhcCCCCCCCCH
Q 040279 527 VVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 527 a~~~~~~~~~~~~~~~p~~ 545 (626)
|++.|+++++ +.|+.
T Consensus 160 A~~~~~~al~----~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE----KEEKK 174 (184)
T ss_dssp HHHHHHHHHH----TTHHH
T ss_pred HHHHHHHHHh----CCccC
Confidence 8888888877 56654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=126.90 Aligned_cols=241 Identities=13% Similarity=0.047 Sum_probs=145.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhHhcCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhh
Q 040279 45 LHENCKSGIINLNEARYFFGYMTHMQPSPP---ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFG 121 (626)
Q Consensus 45 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 121 (626)
...+...| ++++|+..|++++...+... ..++..++..+...|++++|+..++++.+.. +..........++.
T Consensus 12 g~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 12 GERLCKSG--DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--RTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHhc--cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hcccccHHHHHHHH
Confidence 33444544 99999999999998765521 4678899999999999999999999876431 11111111222333
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGV-RPD----VITYGTLINGFCRTGN--------------------LSVALRLHK 176 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 176 (626)
.++..+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 456788999999999999999766421 112 3377888899999999 888888888
Q ss_pred HHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCC-----CCCcchHHHHHHHHHhcCCHHHHHHHH
Q 040279 177 KMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGI-----NPAVVVCTTLIHGFCCAGNWEEVNGLF 251 (626)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~ 251 (626)
+........+ ..+....++..+...+...|++++|.+.+++..+... .....++..+...+...|++++|...+
T Consensus 168 ~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 168 ENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7654210000 0122234566666677777777777777766554210 001124555555566666666666666
Q ss_pred HHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 252 IEMLDLGPR-PN----LLTFNVMIDCLCKGGKINEANGLLELMI 290 (626)
Q Consensus 252 ~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 290 (626)
++..+.... .+ ..++..+...+...|++++|...+++..
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 555432100 00 2234444445555555555555554443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-12 Score=123.62 Aligned_cols=168 Identities=11% Similarity=-0.055 Sum_probs=109.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCC------CCCcchH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGI------NPAVVVC 231 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~ 231 (626)
.+..+...|++++|+..++++.......+. .+....++..+...|...|++++|.+.+++..+... +....++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 667778899999999999999875210000 112456788888889999999999988888765310 1113466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHhhH
Q 040279 232 TTLIHGFCCAGNWEEVNGLFIEMLDLGPR-PN----LLTFNVMIDCLCKGGKINEANGLLELMIQR----GL-NPDRFTY 301 (626)
Q Consensus 232 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 301 (626)
+.+...|...|++++|++.|++.++.... ++ ..++..+...|...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 77777788888888888888777643111 01 125666777777777777777777766652 22 2234455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 040279 302 NSLMDGYCLVGRIDTAREIFLSMHS 326 (626)
Q Consensus 302 ~~ll~~~~~~g~~~~a~~~~~~~~~ 326 (626)
..+...+...|++++|...+++..+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666777766666666544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-12 Score=129.73 Aligned_cols=195 Identities=12% Similarity=-0.075 Sum_probs=104.0
Q ss_pred ChhhHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQA-GYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLI 445 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (626)
+...+..+...+...|++ ++|...|++..+.. +.+...+..+..+|...|++++|...|+...+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 334444444444444555 55555554444432 2234444455555555555555555555554432 2344445555
Q ss_pred HHHHHc---------CCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC---
Q 040279 446 DGLCKA---------GRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK--------GKLEKANDFLLYMEKNGCA--- 505 (626)
Q Consensus 446 ~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--- 505 (626)
.++... |++++|+..|+++.+.. +.+...|..+..+|... |++++|++.|++..+.. +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 555555 55566666666555532 22355555666666555 66666666666666542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 506 PNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
.+...|..+..+|...|++++|.+.|+++.+ +.| +...+..+..++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAA----LDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2555666666666666666666666666665 445 344566666666666666666654433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-10 Score=110.92 Aligned_cols=218 Identities=9% Similarity=0.013 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh-------cCCc-------chHHHHHHHHhhCCCCCCcchHHHH
Q 040279 169 SVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK-------EGLV-------DKAKELFLEMKGRGINPAVVVCTTL 234 (626)
Q Consensus 169 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l 234 (626)
++|...|++++... |.++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..+
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 68899999998865 6778888888887763 5776 7888888888873113345578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH-hcC
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDLGPRPNLL-TFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYC-LVG 312 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g 312 (626)
+..+...|++++|.++|++.++..+. +.. .|..++..+.+.|++++|..+|++..+.+. .+...|........ ..|
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcC
Confidence 88888888888888888888875322 233 677777777788888888888888877532 23333332222211 246
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHHcCCHHHHHH
Q 040279 313 RIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNG-VRQ--TVITYNTLLSGLFQAGQAGYAQK 389 (626)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~ 389 (626)
+++.|..+|+...+... .+...|..++..+.+.|++++|..+|++..... .+| ....|..++......|+.+.|..
T Consensus 184 ~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 184 DKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 67777777766665432 245556666666666666666666666666642 222 23455555555556666666666
Q ss_pred HHHHHHh
Q 040279 390 LFDEMKL 396 (626)
Q Consensus 390 ~~~~~~~ 396 (626)
+++++.+
T Consensus 263 ~~~~a~~ 269 (308)
T 2ond_A 263 VEKRRFT 269 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-12 Score=130.13 Aligned_cols=213 Identities=10% Similarity=-0.016 Sum_probs=178.0
Q ss_pred HHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 56 LNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHY-DAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 56 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
+++++..++......+ .+...+..++..+...|++ ++|+..|+++++. .|+....... ++..|...|+++
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~------lg~~~~~~g~~~ 154 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQ------LGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHH------HHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHH------HHHHHHHcCCHH
Confidence 5667777877666544 4888999999999999999 9999999999976 5654332222 357889999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRT---------GNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
+|+..|++.++. .|+...+..+..++... |++++|++.|+++++.+ +.+...|..+..+|..
T Consensus 155 ~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~ 225 (474)
T 4abn_A 155 SAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-------VLDGRSWYILGNAYLS 225 (474)
T ss_dssp HHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 999999999987 56778899999999999 99999999999999876 6778899999999999
Q ss_pred c--------CCcchHHHHHHHHhhCCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040279 206 E--------GLVDKAKELFLEMKGRGIN---PAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLC 274 (626)
Q Consensus 206 ~--------g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (626)
. |++++|++.|++..+.. + .+...|..+..+|...|++++|++.|++..+..+. +...+..+...+.
T Consensus 226 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~ 303 (474)
T 4abn_A 226 LYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLE 303 (474)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 8 99999999999998863 2 37788999999999999999999999999886543 5667888888888
Q ss_pred hcCCHHHHHHHHHH
Q 040279 275 KGGKINEANGLLEL 288 (626)
Q Consensus 275 ~~~~~~~a~~~~~~ 288 (626)
..|++++|...+..
T Consensus 304 ~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 304 FLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888775544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=123.46 Aligned_cols=235 Identities=13% Similarity=0.044 Sum_probs=125.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-C
Q 040279 335 SYNILINGYCKILNVEEAMSLYRQIISN-------GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLY------NV-E 400 (626)
Q Consensus 335 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~ 400 (626)
++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...+++..+. +. +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444555555555555444431 11122334444555555555555555555554432 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC------
Q 040279 401 PDLSTYNILIDGLCKNNCVQEAVKLFHMLEMN-------KFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK------ 467 (626)
Q Consensus 401 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 467 (626)
.....+..+...+...|++++|...+++..+. ..+.....+..+...+...|++++|..+++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 12335555666666666666666666655432 11223445666777777777777777777776552
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 468 GLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKN-------GCAPNV-------VTFNTLMHGFLQNNKTSKVVELLH 532 (626)
Q Consensus 468 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~ 532 (626)
+..| ...++..++.+|...|++++|.+.++++.+. ...+.. ..+..+...+...+.+.++...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 1122 2446677777888888888888888877652 111111 122222333444556666677777
Q ss_pred HhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 533 KMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 533 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.... ..| ...++..++.+|.+.|++++|.++++++.+
T Consensus 269 ~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 269 ACKV----DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCC----CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7765 445 456788999999999999999999999863
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.9e-11 Score=114.99 Aligned_cols=269 Identities=11% Similarity=0.016 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhh
Q 040279 54 INLNEARYFFGYMTHMQPSPPIS----SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCV 129 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~ 129 (626)
|++++|...+++.+...+..+.. +++.+...+...|++++|...+++..... |+.........+...++..+..
T Consensus 28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA--RQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 59999999999998876544432 56777888899999999999999887531 1111111122222345677889
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 130 ENRIKEATWLFKNMIAF----GVR--P-DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 130 ~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
.|++++|...+++.... +.. | ....+..+...+...|++++|...+++........+ .+....++..+...
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--PQQQLQCLAMLIQC 183 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--GGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC--cHHHHHHHHHHHHH
Confidence 99999999999988764 211 2 234567788899999999999999999886542111 11234567778888
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCc-chHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAV-VVCT-----TLIHGFCCAGNWEEVNGLFIEMLDLGPRPN---LLTFNVMIDCL 273 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 273 (626)
+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 88899999999999887653111111 1222 223346688888888888887765432211 12345566777
Q ss_pred HhcCCHHHHHHHHHHHHhc----CCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040279 274 CKGGKINEANGLLELMIQR----GLNPDR-FTYNSLMDGYCLVGRIDTAREIFLSMHS 326 (626)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 326 (626)
...|++++|...++..... |..++. ..+..+...+...|+.++|...+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7778888777777766543 111111 1334445555666666666666665544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.1e-11 Score=116.14 Aligned_cols=229 Identities=10% Similarity=-0.006 Sum_probs=165.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CC-CHHHHH
Q 040279 339 LINGYCKILNVEEAMSLYRQIISNGVR-QT----VITYNTLLSGLFQAGQAGYAQKLFDEMKLY----NV-EP-DLSTYN 407 (626)
Q Consensus 339 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~ 407 (626)
....+...|++++|+..++++.+.... ++ ..++..+...|...|+++.|...+.+..+. +. .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344556778888888888887653110 12 345677777888888888888888877542 11 11 234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCCCCCHhHHH
Q 040279 408 ILIDGLCKNNCVQEAVKLFHMLEMN----KFE-FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ-----KGLVPTVVTYS 477 (626)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 477 (626)
.+...|...|++++|...+++..+. +.+ ....++..+..+|...|++++|+..+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888999999999988776542 111 1235677888999999999999999998876 32 22367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCC-CHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGC---APN-VVTFNTLMHGFLQNNK---TSKVVELLHKMAEPERNLVP-DDTTFS 549 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~p-~~~~~~ 549 (626)
.++.++.+.|++++|.+.+++..+... .+. ...+..+...+...++ ..+|+.++++... .| ....+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-----~~~~~~~~~ 340 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-----HAYIEACAR 340 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-----hhHHHHHHH
Confidence 899999999999999999999887421 122 3345556666777888 7888888887432 33 345677
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHh
Q 040279 550 IVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 550 ~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.++..|...|++++|.+.++++..
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=123.76 Aligned_cols=243 Identities=12% Similarity=-0.004 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhc------CC-
Q 040279 264 LTFNVMIDCLCKGGKINEANGLLELMIQR-------GLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSK------GC- 329 (626)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~- 329 (626)
.++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++.... +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45555666666666666666666666552 11222344455555555666666666665555432 10
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 040279 330 KHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEP-DLSTYNI 408 (626)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 408 (626)
+.....+..+...+...|++++|+..++++.+... ... .+..| ....+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~-~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVL-GKDHPDVAKQLNN 158 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHH-CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------Hhc-CCCChHHHHHHHH
Confidence 11233344444555555555555555555443200 000 01111 1223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC------C-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-------CCCCC--
Q 040279 409 LIDGLCKNNCVQEAVKLFHMLEMN------K-FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK-------GLVPT-- 472 (626)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-- 472 (626)
+...+...|++++|..+++.+... + .+....++..+..++...|++++|...++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 445555555555555555544332 0 1222334555555566666666666666555431 00111
Q ss_pred -----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 473 -----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 473 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
...+..+...+...+.+.++...+....... +.+..++..+..+|.+.|++++|.++++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111222223334445555555565555432 23345677777777778888888888777765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-11 Score=127.24 Aligned_cols=165 Identities=13% Similarity=0.063 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHH
Q 040279 402 DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIH 481 (626)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (626)
+...++.+...+.+.|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..|+++++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777778888888888888887777654 4567777888888888888888888888877742 224677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCC
Q 040279 482 GLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEK 560 (626)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 560 (626)
+|...|++++|++.|++.++.+ +-+...|..+..+|...|++++|++.|+++++ +.|+ ...+..++.++...|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~----l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK----LKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHhhhhhHHHhccc
Confidence 8888888888888888887753 34567788888888888888888888888887 6774 6778888888888888
Q ss_pred HhHHHHHHHHHHh
Q 040279 561 YHECSAVSKSSYR 573 (626)
Q Consensus 561 ~~~A~~~~~~~~~ 573 (626)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.9e-11 Score=103.40 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHH
Q 040279 404 STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGL 483 (626)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 483 (626)
..+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 355666777778888888888888776543 4567778888888888888888888888887752 33577888888889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHh
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYH 562 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 562 (626)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+ ..| +...+..++.++...|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALG----LRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHcCCHH
Confidence 99999999999999988763 55677888888899999999999999999887 445 5678888999999999999
Q ss_pred HHHHHHHHHH
Q 040279 563 ECSAVSKSSY 572 (626)
Q Consensus 563 ~A~~~~~~~~ 572 (626)
+|.+.++++.
T Consensus 162 ~A~~~~~~~~ 171 (186)
T 3as5_A 162 EALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999886
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-10 Score=113.15 Aligned_cols=228 Identities=8% Similarity=-0.050 Sum_probs=155.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----C-CChhhHHH
Q 040279 305 MDGYCLVGRIDTAREIFLSMHSKGCK-H----TVVSYNILINGYCKILNVEEAMSLYRQIISNGV-----R-QTVITYNT 373 (626)
Q Consensus 305 l~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~-~~~~~~~~ 373 (626)
...+...|++++|...|++..+.... + ...++..+...|...|+++.|+..+++..+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34556778888888888777653110 1 234566777778888888888888877764311 1 11345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHHH
Q 040279 374 LLSGLFQAGQAGYAQKLFDEMKLY----NVEP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEM-----NKFEFGIEIFNC 443 (626)
Q Consensus 374 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 443 (626)
+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++... .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 778888888888888888877542 1111 124667778888888999999988887765 33 334677888
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccC----CCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQK----GLVPTVVTYSIMIHGLCRKGK---LEKANDFLLYMEKNGCAPN-VVTFNTLM 515 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 515 (626)
+...+.+.|++++|...+++..+. +.+.....+..+...+...|+ +.+|+..+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 888899999999999998887662 111113345566666777777 66777766652 22222 34566788
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 040279 516 HGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..|...|++++|...++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999988875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.7e-10 Score=108.18 Aligned_cols=200 Identities=10% Similarity=-0.041 Sum_probs=113.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 040279 337 NILINGYCKILNVEEAMSLYRQIISN----GVR--Q-TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVE----PDLST 405 (626)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 405 (626)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... .....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34445555566666666666555432 111 1 1233444555666666666666666665432111 11234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-C-HHHHH----HHHHHHHHcCCHHHHHHHHHhcccCCCCCC---HhHH
Q 040279 406 YNILIDGLCKNNCVQEAVKLFHMLEMNKFEF-G-IEIFN----CLIDGLCKAGRLDNAWELFHKLPQKGLVPT---VVTY 476 (626)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 476 (626)
+..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 5566666777777777777777655321111 1 11111 223346677888888888887766322111 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 477 SIMIHGLCRKGKLEKANDFLLYMEKN----GCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..+...+...|++++|.+.+++..+. +..++. ..+..+..++...|+.++|...++++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66677778888888888888777542 211122 2555566677788888888888887765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-10 Score=104.88 Aligned_cols=191 Identities=10% Similarity=-0.004 Sum_probs=110.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
++..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..++...+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4456666666667777777777777776664322555555556666667777777777776666554 335556666666
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPTV-------VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN---VVTFNTLMH 516 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 516 (626)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|+++.+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 6777777777777777666532 1123 34556666666666777777777666664 333 345555555
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+|...| ..+++++.. +.+ +...+.... ....|.+++|...++++.
T Consensus 162 ~~~~~~-----~~~~~~a~~----~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATP----LASSNKEKYASEK--AKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHHHH-----HHHHHHHGG----GTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHh----cccCCHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 554333 333444444 211 223332222 233455677777777765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-10 Score=103.89 Aligned_cols=207 Identities=13% Similarity=-0.030 Sum_probs=161.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 040279 331 HTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILI 410 (626)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 410 (626)
.++..+......+...|++++|+..|++..+...+++...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888999999999999999999999987554677788889999999999999999999999864 33566888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC---HhHHHHHH
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGI-------EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT---VVTYSIMI 480 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 480 (626)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|+++.+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999988764 3445 55888888999999999999999999985 454 56778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHH
Q 040279 481 HGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVD 553 (626)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~ 553 (626)
.+|...| ...++++...+ ..+...+.... ....+.+++|+..++++.+ +.|+ ..+...+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~----l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT----LSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh----cCCCCHHHHHHHHH
Confidence 8886554 34455555543 33444444333 3445778999999999998 7785 444444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-10 Score=101.08 Aligned_cols=163 Identities=13% Similarity=0.055 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 040279 370 TYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLC 449 (626)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (626)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455556666677777776666665432 3345566666667777777777777777666543 445666677777777
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 450 KAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVE 529 (626)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 529 (626)
..|++++|.+.++++.+.. +.+...+..++.++...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776642 3356667777777777777777777777777653 4456677777777777788888887
Q ss_pred HHHHhhc
Q 040279 530 LLHKMAE 536 (626)
Q Consensus 530 ~~~~~~~ 536 (626)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-10 Score=122.05 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=143.6
Q ss_pred CCChhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 040279 35 SSPETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLN 114 (626)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 114 (626)
|.....++.+...+.+.| ++++|+..|+++++..|. +..+|+.++.++.+.|++++|+..|+++++. .|+....-
T Consensus 6 P~~a~al~nLG~~~~~~G--~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~ 80 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQG--NIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAY 80 (723)
T ss_dssp CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 444566777777777776 999999999999998776 7899999999999999999999999999976 56643322
Q ss_pred HHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHH
Q 040279 115 ILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIF 194 (626)
Q Consensus 115 ~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 194 (626)
. .++..+...|++++|++.|++.++.. +-+..++..+..++.+.|++++|++.|+++++.+ +.+..
T Consensus 81 ~------nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~ 146 (723)
T 4gyw_A 81 S------NMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPD 146 (723)
T ss_dssp H------HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHH
T ss_pred H------HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChH
Confidence 2 34678899999999999999999874 4468899999999999999999999999999876 67788
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
.+..+...+...|++++|.+.++++.+
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999988764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-10 Score=105.42 Aligned_cols=191 Identities=12% Similarity=-0.024 Sum_probs=124.4
Q ss_pred HHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHH
Q 040279 378 LFQAGQAGYAQKLFDEMKLY----NVEPD-LSTYNILIDGLCKNNCVQEAVKLFHMLEMN----KFEF-GIEIFNCLIDG 447 (626)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~ 447 (626)
|...|++++|...|.+..+. +-+++ ..+|..+..+|...|++++|+..+++.... +... ...+++.+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544321 11111 235556666666666666666666554422 1000 13467778888
Q ss_pred HHHc-CCHHHHHHHHHhcccCCCCC-C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHH
Q 040279 448 LCKA-GRLDNAWELFHKLPQKGLVP-T----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV------VTFNTLM 515 (626)
Q Consensus 448 ~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~ 515 (626)
|... |++++|+..|++..+..... + ..++..++..+...|++++|++.|++..+....... ..+..++
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8886 99999999999887631110 1 356888999999999999999999999986322221 1567788
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCCCHH------HHHHHHHHHH--ccCCHhHHHHHHHHHH
Q 040279 516 HGFLQNNKTSKVVELLHKMAEPERNLVPDDT------TFSIVVDLLA--KDEKYHECSAVSKSSY 572 (626)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~ 572 (626)
.++...|++++|...+++.++ +.|+.. .+..++.++. ..+++++|++.|+++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS----EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC----C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHh----hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 889999999999999999988 666422 3445566664 4678888888887763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-10 Score=107.09 Aligned_cols=235 Identities=12% Similarity=0.024 Sum_probs=155.6
Q ss_pred CCHHHHHHHHHHhHh-------cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCCHhhHHHHHHhhhhh
Q 040279 54 INLNEARYFFGYMTH-------MQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGL---LPDFLTLNILINCFGNK 123 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~~~~~~~ll~~~~~l 123 (626)
|++++|+..|+++++ .+++....++..++..+...|++++|+..++++++... .++.. ....++..+
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l 91 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP---AVAATLNNL 91 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch---HHHHHHHHH
Confidence 466666666666654 22233567899999999999999999999999885410 01111 112223345
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHC------C-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCccccccHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAF------G-VRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYE-NGLISKTNIFS 195 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 195 (626)
+..+...|++++|+..|+++... . .+....++..+...+...|++++|+..++++...... .+...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 67899999999999999998765 1 1223567888999999999999999999998875000 00001345678
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhC-------CCCC-CcchHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCC
Q 040279 196 YSIIIDSLCKEGLVDKAKELFLEMKGR-------GINP-AVVVCTTLIHGFCCAGN------WEEVNGLFIEMLDLGPRP 261 (626)
Q Consensus 196 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~~~~~ 261 (626)
+..+...+...|++++|.+.+++..+. ...+ ....|..+...+...+. +..+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 889999999999999999999998763 1122 23344444444443333 22232223222111 122
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 262 NLLTFNVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
...++..+...|...|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-08 Score=98.78 Aligned_cols=375 Identities=8% Similarity=-0.046 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC-cch
Q 040279 133 IKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL-VDK 211 (626)
Q Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 211 (626)
++.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.+. .+.
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--------~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--------SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--------CCCHHHHHHHHHHHHHHC----C
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCchHHH
Confidence 66666666666653 222 6677777777777763 2467777777766666553 355
Q ss_pred HHHHHHHHhhC-CC-CCCcchHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHH
Q 040279 212 AKELFLEMKGR-GI-NPAVVVCTTLIHGFC----CAGNWEEVNGLFIEMLDLGPRPNL-LTFNVMIDCLCKGGKINEANG 284 (626)
Q Consensus 212 A~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 284 (626)
...+|+..... |. +.+...|...+..+. .+++.+.+..+|++.+... ..+. ..|...... .+......+..
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~f-E~~~~~~~~~~ 144 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENF-ELELNKITGKK 144 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHH-HHHhccccHHH
Confidence 66667666543 32 224456666665433 2355677777777777631 1111 122222111 11111222222
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--C-----hHHHHHHHH
Q 040279 285 LLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL--N-----VEEAMSLYR 357 (626)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~A~~~~~ 357 (626)
++.+.. +.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+
T Consensus 145 ~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 145 IVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 222211 111222222222221100012223433333322110 0 234555666
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 040279 358 QIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMN----- 432 (626)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 432 (626)
+++.. .+.+...|...+..+...|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+.
T Consensus 204 ~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~ 273 (493)
T 2uy1_A 204 YILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGE 273 (493)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC---
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhc
Confidence 66654 2334556666666666667777777777776655 22222211 12111111111 1111110
Q ss_pred -------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCC
Q 040279 433 -------KFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR-KGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 433 -------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~ 504 (626)
.......+|...+....+.++.+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+...+..
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~- 350 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH- 350 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 00112356777777777788999999999999 32 12344555433333223 346999999999998862
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhh
Q 040279 505 APNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYRA 574 (626)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 574 (626)
+.+...+...+......|+.+.|..+|+.+.+ ....|...+..-...|+.+.+.++++++...
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33455666677777788999999999999843 4677888887777889999999999998753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-09 Score=102.92 Aligned_cols=219 Identities=8% Similarity=-0.062 Sum_probs=141.9
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHH
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIK 134 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~ 134 (626)
++++|...|+++ +..+...|++++|+..|++..... +..........++..++..|...|+++
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQ--KKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 367777777665 456778999999999999887531 111111122233445677888999999
Q ss_pred HHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCC
Q 040279 135 EATWLFKNMIAFGVR-PD----VITYGTLINGFCRT-GNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGL 208 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 208 (626)
+|+..|++.+..... .+ ..++..+..+|... |++++|+..|++.+......+. ......++..+...+.+.|+
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCC
Confidence 999999988764210 01 35788899999996 9999999999998874310000 00113567788889999999
Q ss_pred cchHHHHHHHHhhCCCCCCcc------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-Ch---hhHHHHHHHHH--hc
Q 040279 209 VDKAKELFLEMKGRGINPAVV------VCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRP-NL---LTFNVMIDCLC--KG 276 (626)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~~l~~~~~--~~ 276 (626)
+++|++.|++..+........ .|..+..++...|++++|...|++.++..+.. +. ..+..++..+. ..
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999999999988764222211 45677778888899999999888887643211 11 12333444443 34
Q ss_pred CCHHHHHHHHHHHHh
Q 040279 277 GKINEANGLLELMIQ 291 (626)
Q Consensus 277 ~~~~~a~~~~~~~~~ 291 (626)
+++++|+..|+.+..
T Consensus 254 ~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccCCc
Confidence 556666666655543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-10 Score=106.07 Aligned_cols=164 Identities=16% Similarity=0.059 Sum_probs=114.8
Q ss_pred hcCCHHHHHHHHHHHHHC-------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CccccccHHHHHHHH
Q 040279 129 VENRIKEATWLFKNMIAF-------GVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYEN-GLISKTNIFSYSIII 200 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 200 (626)
..|++++|+..|++.++. ..+....++..+...+...|++++|+..++++....... +...+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345555565555555442 212345678889999999999999999999987541000 000245567888899
Q ss_pred HHHHhcCCcchHHHHHHHHhhC------C-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-ChhhH
Q 040279 201 DSLCKEGLVDKAKELFLEMKGR------G-INPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL------GPRP-NLLTF 266 (626)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 266 (626)
..+...|++++|.+.+++.... . .+....++..+...|...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988754 1 1223567778888888889999998888888764 1122 24467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040279 267 NVMIDCLCKGGKINEANGLLELMIQR 292 (626)
Q Consensus 267 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 292 (626)
..+...+...|++++|...++++.+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77778888888888888888877653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-08 Score=93.99 Aligned_cols=185 Identities=11% Similarity=0.063 Sum_probs=116.5
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 352 AMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNV-EPDLSTYNILIDGLCKNNCVQEAVKLFHMLE 430 (626)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (626)
|+..+++....+ .++......+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666543 34455555666777777888888888877765432 1245566677777888888888888887776
Q ss_pred HCCCCc-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 431 MNKFEF-----GIEIFNCLIDG--LCKAG--RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 431 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 24455555555 33334 778888888887664 34423333333477778888888888876654
Q ss_pred C-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHH
Q 040279 502 N-----G----CAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTT 547 (626)
Q Consensus 502 ~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~ 547 (626)
. + -+.|..++..++......|+ +|.++++++.+ ..|+...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~----~~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK----LDHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH----TTCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH----hCCCChH
Confidence 2 0 03345566566655556666 77788888877 6676443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=6.6e-09 Score=95.52 Aligned_cols=185 Identities=8% Similarity=-0.005 Sum_probs=134.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 040279 387 AQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKF-EFGIEIFNCLIDGLCKAGRLDNAWELFHKLP 465 (626)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 465 (626)
+...+++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 45666666788888899999999999998876553 2467788888999999999999999999997
Q ss_pred cCCCCC-----CHhHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 466 QKGLVP-----TVVTYSIMIHG--LCRKG--KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 466 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 74 45 24555555555 33334 899999999998775 45544444445588899999999999987765
Q ss_pred CCC---CC---CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCc
Q 040279 537 PER---NL---VP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSS 585 (626)
Q Consensus 537 ~~~---~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~ 585 (626)
... .. .| +..++..++.+....|+ +|.++++++. ...|+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~-------~~~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV-------KLDHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH-------HTTCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH-------HhCCCC
Confidence 000 00 25 45667677777777786 8889999886 446665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.12 E-value=8.1e-08 Score=96.88 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC-CHHHHHHHHHhcccCCCCCCHhHHHHHHHHH
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG-RLDNAWELFHKLPQKGLVPTVVTYSIMIHGL 483 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 483 (626)
.|...+....+.++.+.|..+|+.. ... ..+..+|......-...+ +.+.|..+|+...+.. +.+...|...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444445455556677777777666 221 223334432222222222 5677777777666531 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
...|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66677777777777662 245556666655555677777766666655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-09 Score=96.13 Aligned_cols=123 Identities=13% Similarity=0.009 Sum_probs=62.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNK 523 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 523 (626)
+..+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|++.|+++.+.+ +.+..++..++.+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 5555566666666666666655532 2235555566666666666666666666665542 3344555555555544332
Q ss_pred --HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 524 --TSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 524 --~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.+.+...+++... ..|....+...+.++...|++++|...|+++.
T Consensus 138 ~~~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 138 QEKKKLETDYKKLSS----PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHC---C----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC----CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2333444444433 22222333444555555566666666666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-09 Score=98.18 Aligned_cols=162 Identities=8% Similarity=-0.032 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC-CCC-HhHHHHH
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFG---IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL-VPT-VVTYSIM 479 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l 479 (626)
.+..+...+.+.|++++|...|+.+.... +.+ ...+..+..+|...|++++|+..|+++.+... .|. ...+..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 33334444444444444444444444332 112 33444444444445555555555554444211 001 2233444
Q ss_pred HHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHh
Q 040279 480 IHGLCR--------KGKLEKANDFLLYMEKNGCAPNVVT-----------------FNTLMHGFLQNNKTSKVVELLHKM 534 (626)
Q Consensus 480 ~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~-----------------~~~l~~~~~~~g~~~~a~~~~~~~ 534 (626)
..++.. .|++++|+..|+++.+.. +.+... +..++..|...|++++|+..|+++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444444 455555555555554431 111111 356788899999999999999999
Q ss_pred hcCCCCCCCC----HHHHHHHHHHHHcc----------CCHhHHHHHHHHHH
Q 040279 535 AEPERNLVPD----DTTFSIVVDLLAKD----------EKYHECSAVSKSSY 572 (626)
Q Consensus 535 ~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~ 572 (626)
++ ..|+ ...+..++.+|... |++++|.+.++++.
T Consensus 175 l~----~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 175 FD----AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HH----HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HH----HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 88 4554 46788888888866 99999999999986
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-09 Score=92.07 Aligned_cols=161 Identities=12% Similarity=0.057 Sum_probs=126.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH-H
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG-L 483 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~ 483 (626)
.+......+...|++++|...+++..... |.+...+..+..++...|++++|+..++++.... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34556677888999999999998877554 5577888999999999999999999999998753 454444333222 2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC---HHHHHHHHHHHHccCC
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD---DTTFSIVVDLLAKDEK 560 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 560 (626)
...+...+|++.+++..+.. +.+...+..+..++...|++++|...++++++ ..|+ ...+..++.++...|+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILK----VNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCcccChHHHHHHHHHHHHHhCC
Confidence 23233445788999998863 44678899999999999999999999999998 5664 5688899999999999
Q ss_pred HhHHHHHHHHHHh
Q 040279 561 YHECSAVSKSSYR 573 (626)
Q Consensus 561 ~~~A~~~~~~~~~ 573 (626)
.++|...|+++..
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998854
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-09 Score=94.25 Aligned_cols=139 Identities=11% Similarity=0.014 Sum_probs=104.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 407 NILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 407 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
..+..++.+.|++++|+..|++..+.. |.+...+..+..++...|++++|+..|+++.+.. +.+..+|..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 347788889999999999999888765 5678889999999999999999999999998853 33577888888888666
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040279 487 GK--LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVD 553 (626)
Q Consensus 487 g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 553 (626)
|+ .+.+...++.... ..|....+.....++...|++++|+..|+++++ +.|+......+..
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~----l~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL----RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT----TSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCHHHHHHHHH
Confidence 54 4455666665542 233333455566677788999999999999998 8898765554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.9e-09 Score=85.46 Aligned_cols=127 Identities=14% Similarity=0.214 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
.+..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556667777777777777777776542 2356667777777777778888888887777653 445667777777777
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..|++++|.+.++++.+ ..| +...+..++.++.+.|++++|.+.++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALE----LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 88888888888888776 344 46667777778888888888888887775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-09 Score=113.92 Aligned_cols=173 Identities=9% Similarity=-0.022 Sum_probs=134.2
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 040279 379 FQAGQAGYAQKLFDEMK--------LYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK 450 (626)
Q Consensus 379 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (626)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888887 332 3455677778888888899999999888887654 4567788888888888
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL 530 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 530 (626)
.|++++|++.|+++.+.. +.+...|..+..++.+.|++++ ++.|+++.+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999888753 2257778888888999999999 89999888864 44667888888899999999999999
Q ss_pred HHHhhcCCCCCCCC-HHHHHHHHHHHHccCC
Q 040279 531 LHKMAEPERNLVPD-DTTFSIVVDLLAKDEK 560 (626)
Q Consensus 531 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 560 (626)
|+++++ +.|+ ...+..++.++...|+
T Consensus 557 ~~~al~----l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP----TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT----TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc----cCcccHHHHHHHHHHHHccCC
Confidence 999887 7786 4667777777766554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-09 Score=98.13 Aligned_cols=166 Identities=12% Similarity=0.007 Sum_probs=138.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHH-H
Q 040279 400 EPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYS-I 478 (626)
Q Consensus 400 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~ 478 (626)
+.+...+..+...+...|++++|...|+++.... |.+...+..+...+...|++++|...++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4455667777888889999999999999988765 557888999999999999999999999999875 35544333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC---HHHHHHHHHHH
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD---DTTFSIVVDLL 555 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~~~l~~~~ 555 (626)
....+...++.++|.+.+++..+.. +.+...+..+...+...|++++|...+.++++ ..|+ ...+..++.++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~----~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLR----XDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh----cccccccchHHHHHHHHH
Confidence 3334677788889999999998874 55778999999999999999999999999998 6664 56789999999
Q ss_pred HccCCHhHHHHHHHHHHh
Q 040279 556 AKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 556 ~~~g~~~~A~~~~~~~~~ 573 (626)
...|+.++|...+++.+.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999998754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.2e-09 Score=98.17 Aligned_cols=204 Identities=10% Similarity=0.028 Sum_probs=116.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC-HHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQT---VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNV-EPD-LSTY 406 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~ 406 (626)
+...+......+.+.|++++|+..|+++.+... .+ ...+..+...+...|++++|...|+.+.+... .|. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 445555556666666667777766666665421 12 34555566666666666666666666655311 111 2344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHH
Q 040279 407 NILIDGLCK--------NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSI 478 (626)
Q Consensus 407 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (626)
..+..++.. .|++++|...|+++.... |.+......+.......++ -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~------------------~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAK------------------LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHH------------------HHHHHHH
Confidence 455555555 666666666666655442 1122222111100000000 0111356
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHhhcCCCCCCCC
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPN----VVTFNTLMHGFLQN----------NKTSKVVELLHKMAEPERNLVPD 544 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~p~ 544 (626)
++.+|...|++++|+..|+++++.. |+ ...+..++.+|... |++++|...++++++ ..|+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~----~~p~ 227 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ----IFPD 227 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH----HCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH----HCCC
Confidence 7788889999999999999998752 33 34677777788766 888999999999988 5665
Q ss_pred H----HHHHHHHHHHHccCCH
Q 040279 545 D----TTFSIVVDLLAKDEKY 561 (626)
Q Consensus 545 ~----~~~~~l~~~~~~~g~~ 561 (626)
. .....+..++...|++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHh
Confidence 3 2333444444444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-10 Score=93.67 Aligned_cols=143 Identities=9% Similarity=-0.054 Sum_probs=96.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHH
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLE 490 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 490 (626)
..+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34445567777777777665432 2334455667777778888888888888777742 235677777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhhcCCCCCCC-CHHHHHHHHHHHHccCC
Q 040279 491 KANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVEL-LHKMAEPERNLVP-DDTTFSIVVDLLAKDEK 560 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 560 (626)
+|+..|++..+.+ +-+..++..+...|.+.|++++|.+. ++++++ +.| ++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~----l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK----LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH----HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHhCc
Confidence 8888888877753 33566777777778777877665554 577777 667 45566666666666664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-09 Score=84.31 Aligned_cols=128 Identities=14% Similarity=0.184 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh
Q 040279 406 YNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR 485 (626)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 485 (626)
+..+...+...|++++|..+++.+.... +.+...+..+...+...|++++|..+++++...+ +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4555666666777777777777666543 3455666667777777777777777777776642 2345667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 486 KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 778888888777777653 44566777777777778888888888777766
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8e-10 Score=92.19 Aligned_cols=146 Identities=9% Similarity=-0.047 Sum_probs=105.7
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
++..+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|+++++.+ |.+..+|..+..+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-------ERDPKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 5567778888888888888877642 2234556678888888899999999998888876 6678888888888
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGL-FIEMLDLGPRPNLLTFNVMIDCLCKGGK 278 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 278 (626)
|.+.|++++|+..|++..+.. +-+...|..+...|.+.|++++|.+. +++.++..+. +..+|......+...|+
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 888888888888888887763 33567788888888888887765554 4777765433 56666666666666554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-09 Score=91.18 Aligned_cols=167 Identities=11% Similarity=0.022 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040279 38 ETQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILI 117 (626)
Q Consensus 38 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 117 (626)
..........+...| ++++|...|++++...|. +...+..++..+.+.|++++|+..++++.+. .|+.. +..+.
T Consensus 6 ~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~ 79 (176)
T 2r5s_A 6 DEQLLKQVSELLQQG--EHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLI 79 (176)
T ss_dssp CTTHHHHHHHHHHTT--CHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHH
Confidence 344555556666666 999999999999887666 7889999999999999999999999998765 44332 22222
Q ss_pred HhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHH
Q 040279 118 NCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYS 197 (626)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (626)
..+ .+...+....|+..+++.++.. +.+...+..+..++...|++++|+..|+++++.+. ...+...+.
T Consensus 80 ~~~-----~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~a~~ 148 (176)
T 2r5s_A 80 AKL-----ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-----GAQDGEVKK 148 (176)
T ss_dssp HHH-----HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-----TTTTTHHHH
T ss_pred HHH-----HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-----ccChHHHHH
Confidence 111 1122233445789999988874 44688899999999999999999999999998761 012356888
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhh
Q 040279 198 IIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
.+...+...|+.++|...|++...
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHH
Confidence 899999999999999999987654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.4e-09 Score=97.43 Aligned_cols=160 Identities=11% Similarity=-0.016 Sum_probs=99.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhh
Q 040279 44 FLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNK 123 (626)
Q Consensus 44 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l 123 (626)
....+...| ++++|...|++++...|. +..++..++..+.+.|++++|+..++++... .|+........
T Consensus 123 ~a~~~~~~g--~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~------ 191 (287)
T 3qou_A 123 QAMQLMQES--NYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA------ 191 (287)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH------
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH------
Confidence 333444444 777777777777776555 5666777777777777777777777776654 44443222221
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
...+...++.++|+..+++..... +.+...+..+..++...|++++|+..|+++++.+. ...+...+..++..+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p-----~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDL-----TAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TGGGGHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----ccccchHHHHHHHHH
Confidence 123445566666777777766653 34566677777777777777777777777776541 011255666777777
Q ss_pred HhcCCcchHHHHHHHHh
Q 040279 204 CKEGLVDKAKELFLEMK 220 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~ 220 (626)
...|+.++|...|++..
T Consensus 266 ~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 266 AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 77777777776666543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.8e-08 Score=87.46 Aligned_cols=160 Identities=12% Similarity=0.011 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC----CHHHHHHHHHhcccCCCCCCHhHHH
Q 040279 402 DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG----RLDNAWELFHKLPQKGLVPTVVTYS 477 (626)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~ 477 (626)
+...+..+...|...+++++|...|+...+.+ +...+..+...|.. + ++++|.++|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33444444444444555555555555444433 33444444444444 3 4555555555554432 344445
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCCCHHHH
Q 040279 478 IMIHGLCR----KGKLEKANDFLLYMEKNGCA-PNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAEPERNLVPDDTTF 548 (626)
Q Consensus 478 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~ 548 (626)
.|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .+++++|..+|+++.+ ..++...+
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~~~~~~a~ 165 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS----LSRTGYAE 165 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----TSCTTHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----cCCCHHHH
Confidence 55555544 45555555555555554310 014455555555555 5555666666666555 22234445
Q ss_pred HHHHHHHHcc-C-----CHhHHHHHHHHHH
Q 040279 549 SIVVDLLAKD-E-----KYHECSAVSKSSY 572 (626)
Q Consensus 549 ~~l~~~~~~~-g-----~~~~A~~~~~~~~ 572 (626)
..++.+|... | ++++|.++++++.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 5555555432 2 5666666666553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-09 Score=112.53 Aligned_cols=161 Identities=6% Similarity=-0.118 Sum_probs=139.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh
Q 040279 414 CKNNCVQEAVKLFHMLE--------MNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR 485 (626)
Q Consensus 414 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 485 (626)
...|++++|+..+++.. ... +.+...+..+..++...|++++|+..|+++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999987 443 5567888999999999999999999999998853 3367899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHH
Q 040279 486 KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHEC 564 (626)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 564 (626)
.|++++|++.|+++.+.+ +.+...+..+..++.+.|++++ ++.|+++++ +.| +...+..++.++.+.|++++|
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS----TNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH----hCCchHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999864 4467889999999999999999 999999998 778 578899999999999999999
Q ss_pred HHHHHHHHhhccccccccCCchhhh
Q 040279 565 SAVSKSSYRACLYVTIFQPSSLGSM 589 (626)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~p~~~~~l 589 (626)
.+.|+++. ...|+...+.
T Consensus 554 ~~~~~~al-------~l~P~~~~a~ 571 (681)
T 2pzi_A 554 VRTLDEVP-------PTSRHFTTAR 571 (681)
T ss_dssp HHHHHTSC-------TTSTTHHHHH
T ss_pred HHHHHhhc-------ccCcccHHHH
Confidence 99999985 4567764433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-08 Score=105.64 Aligned_cols=149 Identities=7% Similarity=-0.043 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040279 417 NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFL 496 (626)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 496 (626)
|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666777776665443 3456666777777777777777777777776642 224666777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHcc---CCHhHHHHHHHHHH
Q 040279 497 LYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKD---EKYHECSAVSKSSY 572 (626)
Q Consensus 497 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 572 (626)
++..+.. +.+...+..+..++...|++++|.+.++++.+ +.| +...+..++.++... |++++|.+.++++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ----LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 7777653 34456677777777777777777777777776 455 356667777777777 77777777777765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-08 Score=88.80 Aligned_cols=206 Identities=11% Similarity=0.057 Sum_probs=116.6
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 040279 39 TQLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPP--ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNIL 116 (626)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 116 (626)
..+......+...| ++++|+..|+.++...|... ..++..++.++.+.|++++|+..|+++++. .|+.......
T Consensus 5 ~~~~~~a~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a 80 (225)
T 2yhc_A 5 NEIYATAQQKLQDG--NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHH
Confidence 34444555555555 77777777777777655422 346667777777777777777777777765 4544332111
Q ss_pred HHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHH
Q 040279 117 INCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSY 196 (626)
Q Consensus 117 l~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (626)
.- .++..+...+.. . ...+..+...+...|++++|+..|+++++.. |.+...+
T Consensus 81 ~~---~~g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~ 133 (225)
T 2yhc_A 81 MY---MRGLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTT 133 (225)
T ss_dssp HH---HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-------TTCTTHH
T ss_pred HH---HHHHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHH
Confidence 10 012222222110 0 0112233344456789999999999999876 3333333
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHH
Q 040279 197 SIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPN--LLTFNVMIDCLC 274 (626)
Q Consensus 197 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 274 (626)
....... .+...+. .....+...|.+.|++++|+..|+++++..+... ...+..+..++.
T Consensus 134 ~a~~~l~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 195 (225)
T 2yhc_A 134 DATKRLV----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYR 195 (225)
T ss_dssp HHHHHHH----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH
Confidence 2211110 0111111 1223456777888888888888888887533311 245777888888
Q ss_pred hcCCHHHHHHHHHHHHhcC
Q 040279 275 KGGKINEANGLLELMIQRG 293 (626)
Q Consensus 275 ~~~~~~~a~~~~~~~~~~~ 293 (626)
+.|++++|.+.++.+...+
T Consensus 196 ~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 196 QMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HTTCHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHHHHhhC
Confidence 8888888888888887764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-08 Score=89.00 Aligned_cols=183 Identities=11% Similarity=-0.044 Sum_probs=110.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--HHHHH
Q 040279 368 VITYNTLLSGLFQAGQAGYAQKLFDEMKLYNV-EP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGI--EIFNC 443 (626)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ 443 (626)
...+..+...+...|++++|...|+.+.+... .| ....+..+..++.+.|++++|+..|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566677778888888888888776421 11 1345666777788888888888888877765422111 13444
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHH------------
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN-VVT------------ 510 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~------------ 510 (626)
+..++...|.. .+ ..|..+...+...|++++|...|+++++. .|+ ...
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHH
Confidence 44444432100 00 00111111222234444555555554443 122 111
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 511 -----FNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD----DTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 511 -----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
...+...|.+.|++++|+..|+++++ ..|+ ...+..++.++.+.|++++|.+.++.+..
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLR----DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH----HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 13456778899999999999999998 5564 25688899999999999999999998863
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.2e-08 Score=86.58 Aligned_cols=176 Identities=9% Similarity=-0.049 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC----Ccc
Q 040279 135 EATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG----LVD 210 (626)
Q Consensus 135 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~ 210 (626)
+|++.|++..+.| +..++..+...+...+++++|+..|++..+.+ ++..+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 4667777777754 67777888888888888888888888887654 35566667777766 5 778
Q ss_pred hHHHHHHHHhhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCCHHH
Q 040279 211 KAKELFLEMKGRGINPAVVVCTTLIHGFCC----AGNWEEVNGLFIEMLDLGPR-PNLLTFNVMIDCLCK----GGKINE 281 (626)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 281 (626)
+|.+.|++..+.| +...+..|...|.. .+++++|+++|++..+.+.. .+...+..+...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8888888877654 56667777777766 67788888888877765431 015566677777766 667777
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcC
Q 040279 282 ANGLLELMIQRGLNPDRFTYNSLMDGYCLV-G-----RIDTAREIFLSMHSKG 328 (626)
Q Consensus 282 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 328 (626)
|...|++..+. ..+...+..|..+|... | ++++|..+|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777777665 22334555555555543 2 6777777777776665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-07 Score=84.75 Aligned_cols=217 Identities=11% Similarity=0.040 Sum_probs=151.3
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 040279 349 VEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAG--QAGYAQKLFDEMKLYNVEPDLSTYNILIDGL----CKN---NCV 419 (626)
Q Consensus 349 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 419 (626)
.++|+.++++++..+ +.+...|+.-...+...+ +++++++.++.+.... +.+..+++.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 356666666666542 223444555555555555 6666776666666542 22333343333333 333 677
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH--HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC------HHH
Q 040279 420 QEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLD--NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK------LEK 491 (626)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 491 (626)
++++.+++.+.+.. +-+..+|+.-..++.+.|.++ ++++.++++.+... -|...|+....++...|. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 88888888887655 557777777777777778777 88888888887643 367788877777776666 899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHhhcCCCC-CCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTS-KVVELLHKMAEPERN-LVP-DDTTFSIVVDLLAKDEKYHECSAVS 568 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 568 (626)
+++.+++++..+ +-|...|+.+...+.+.|+.. .+..+.+++.+ .+ ..| +...+..++.++.+.|+.++|.+.+
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD--LEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE--GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh--ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999998875 668889999988888888754 46668888776 21 123 6788999999999999999999999
Q ss_pred HHHH
Q 040279 569 KSSY 572 (626)
Q Consensus 569 ~~~~ 572 (626)
+.+.
T Consensus 282 ~~l~ 285 (306)
T 3dra_A 282 DLLK 285 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9984
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-06 Score=79.50 Aligned_cols=230 Identities=7% Similarity=-0.060 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCChhhHHHHHHHH----Hhc---CChH
Q 040279 280 NEANGLLELMIQRGLNPDRFTYNSLMDGYCLVG--RIDTAREIFLSMHSKGCKHTVVSYNILINGY----CKI---LNVE 350 (626)
Q Consensus 280 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 350 (626)
++|+.+.+.++..+.. +...|+.--..+...| +++++++.++.+.....+ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3455555544444211 2233333333444444 555555555555544322 333444333333 233 4566
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 040279 351 EAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAG--YAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNC------VQEA 422 (626)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 422 (626)
+++.+++++.+.. +.+...|+.-.-.+...|.++ ++++.++++.+.+ +-|...++.-...+...+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666666542 235555555555555555555 6666666666543 3344555554444444444 7778
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHhcccCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 423 VKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDN-AWELFHKLPQKG--LVPTVVTYSIMIHGLCRKGKLEKANDFLLYM 499 (626)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 499 (626)
++.++.+.... +.|...|+.+...+.+.|+... +..+.+++.+.+ -..+...+..++.+|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88887777665 5677788877777777777443 555667666532 1346777888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHH
Q 040279 500 EKNGCAPNVVTFNTL 514 (626)
Q Consensus 500 ~~~~~~p~~~~~~~l 514 (626)
.+.--+.....|...
T Consensus 285 ~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHTTCGGGHHHHHHH
T ss_pred HhccChHHHHHHHHH
Confidence 763113334444433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-08 Score=80.97 Aligned_cols=95 Identities=7% Similarity=-0.011 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIV 551 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l 551 (626)
...+...+..|.+.|++++|++.|++.++.+ +.+...|..+..+|.+.|++++|+..++++++ +.| +...|..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~a~~~l 87 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR----LDSKFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH----hhhhhhHHHHHH
Confidence 3456666677777777777777777776653 44566677777777777777777777777776 556 35667777
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++...|++++|.+.|+++.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777777765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.6e-08 Score=103.65 Aligned_cols=153 Identities=10% Similarity=-0.043 Sum_probs=115.4
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
|++++|...|+++++..|. +...|..++..+.+.|++++|+..|++.++. .|+....... ++..+...|++
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~------lg~~~~~~g~~ 73 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVAR------LGRVRWTQQRH 73 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHH------HHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH------HHHHHHHCCCH
Confidence 4899999999999887665 7889999999999999999999999999976 5554332222 35678899999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc---CCcc
Q 040279 134 KEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE---GLVD 210 (626)
Q Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~ 210 (626)
++|...|++..+.. +.+...+..+..++.+.|++++|++.++++.+.+ +.+...+..+...+... |+.+
T Consensus 74 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~g~~~ 145 (568)
T 2vsy_A 74 AEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------PEEPYITAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhccccHH
Confidence 99999999999874 4467889999999999999999999999999876 56788899999999999 9999
Q ss_pred hHHHHHHHHhhCC
Q 040279 211 KAKELFLEMKGRG 223 (626)
Q Consensus 211 ~A~~~~~~~~~~~ 223 (626)
+|.+.+++..+.+
T Consensus 146 ~A~~~~~~al~~~ 158 (568)
T 2vsy_A 146 VLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-08 Score=93.92 Aligned_cols=122 Identities=15% Similarity=0.092 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHhHhcCCC------CC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhh
Q 040279 55 NLNEARYFFGYMTHMQPS------PP----ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKE 124 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~ 124 (626)
++++|..++++..+..+. ++ ...|...+..+...|++++|+..|.++... .+..........++..++
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEA--HANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHH
Confidence 677787777776543221 11 112333444455555555555555554432 111111111222222334
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCC---CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGV---RP--DVITYGTLINGFCRTGNLSVALRLHKKMV 179 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 179 (626)
..|...|++++|+..|++.+..-. .+ -..++..+..+|.. |++++|+..|++.+
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 445555555555555555433200 00 02234444444444 55555555555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.1e-08 Score=93.07 Aligned_cols=187 Identities=9% Similarity=-0.052 Sum_probs=111.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHH
Q 040279 377 GLFQAGQAGYAQKLFDEMKLY----NVEP-DLSTYNILIDGLCKNNCVQEAVKLFHMLEMN----KFE-FGIEIFNCLID 446 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~ 446 (626)
.|...|++++|...+.+..+. +-.+ -..+|..+...|...|++++|+..+++.... +.+ ....++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544321 1000 1234555566666667777776666654421 111 11345666777
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVP-----TVVTYSIMIHGLCRKGKLEKANDFLLYMEKN----GCAPN-VVTFNTLMH 516 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~ 516 (626)
+|.. |++++|+..|++..+..... ...++..+..+|...|++++|++.|++..+. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7777 88888888888776521100 1456778888899999999999999888763 11111 225666777
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCCH--HHHHHHHHHHHccCCHhHHHH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVPDD--TTFSIVVDLLAKDEKYHECSA 566 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 566 (626)
++...|++++|...|++.+ ......... ..+..++.++ ..|+.+++.+
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7888899999999999987 333232222 2344555555 5677766666
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.4e-08 Score=87.78 Aligned_cols=190 Identities=9% Similarity=-0.083 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-------------
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLL-------FGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL------------- 113 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~------------- 113 (626)
++...|++.|.++....|. ....|..+ ...+.+.++..+++..+...+.. .|+....
T Consensus 20 ~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCCEE
T ss_pred CCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccccc
Confidence 5999999999999999877 88999988 67777777778887777766542 3332211
Q ss_pred -----HHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 040279 114 -----NILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLI 188 (626)
Q Consensus 114 -----~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 188 (626)
..+--+ .+..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 97 ~v~~r~dl~La---yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~------ 165 (282)
T 4f3v_A 97 PVTSPLAITMG---FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP------ 165 (282)
T ss_dssp ECSSHHHHHHH---HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS------
T ss_pred ccCCHhHHHHH---HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC------
Confidence 111111 2346677888888888888887653 433366667778888888888888887654421
Q ss_pred ccc--cHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 189 SKT--NIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPA--VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLG 258 (626)
Q Consensus 189 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 258 (626)
.+ ....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 166 -d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 166 -DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 123567777788888888888888888774322132 2355666677778888888888888887753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-07 Score=83.55 Aligned_cols=127 Identities=9% Similarity=-0.045 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
+..+...+...|++++|...|++.. .|+...|..++.+|...|++++|++.+++..+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455667778888888888888875 3577788888888888888888888888888764 4566778888888888
Q ss_pred cCCHHHHHHHHHHhhcCCCC------------CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 521 NNKTSKVVELLHKMAEPERN------------LVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 521 ~g~~~~a~~~~~~~~~~~~~------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.|++++|.+.++++++...+ ..| ....+..++.++.+.|++++|.+.++++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888888888771110 112 13678888888888999999999988886
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.84 E-value=9.8e-09 Score=85.03 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=75.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIV 551 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l 551 (626)
...+..+...+.+.|++++|++.|+++.+.+ +.+...|..+..+|...|++++|+..|+++++ +.| +...+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~----l~P~~~~~~~~l 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA----LGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh----hCCCCcHHHHHH
Confidence 5567777788888888888888888888764 44677788888888888888888888888887 667 46778888
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.+|.+.|++++|.+.|+++.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888888888876
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.3e-08 Score=78.65 Aligned_cols=111 Identities=11% Similarity=0.020 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+......|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|++.+++.++.+ +.+...|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456677788888888888888888887753 3357788888888888888888888888888864 4567788888888
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHH
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDL 554 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~ 554 (626)
+...|++++|++.|+++++ +.|+ ...+..+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~----l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQ----VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH----HCcCCHHHHHHHHHh
Confidence 8888888899888888888 7774 4555555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=4.2e-07 Score=85.45 Aligned_cols=176 Identities=6% Similarity=-0.054 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCC-CC----H
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVR-PD----V 152 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~ 152 (626)
+...+..+...|++++|..++++..+. .+........+..+..++..+...+++++|+..|++++..... ++ .
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKK--EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcc--ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 333467788999999999999999864 2322222222222323456677888999999999999985322 22 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC----CCCCC-
Q 040279 153 ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR----GINPA- 227 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~- 227 (626)
.+++.++.+|...|++++|+..|+++++.-...+...+....++..+...|.+.|++++|++.+++..+. +..+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 3689999999999999999999999884110000001233446777888888888888888887776542 11111
Q ss_pred cchHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 040279 228 VVVCTTLIHGFCCAG-NWEEVNGLFIEML 255 (626)
Q Consensus 228 ~~~~~~li~~~~~~~-~~~~a~~~~~~~~ 255 (626)
..+|..+..+|.+.| ++++|.+.+++.+
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 345666777777777 3577777776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-07 Score=82.94 Aligned_cols=130 Identities=11% Similarity=-0.071 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh
Q 040279 406 YNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR 485 (626)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 485 (626)
+..+...+...|++++|...|++.. +++...+..+..++...|++++|+..|++..+.. +.+...|..++.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455667778888888888887663 5577888888888889999999999998888753 3357788888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH
Q 040279 486 KGKLEKANDFLLYMEKNGCAPNV----------------VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 545 (626)
.|++++|++.|+++.+.. +.+. ..+..+..++...|++++|.+.++++++ +.|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS----MKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCSG
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCccc
Confidence 999999999999988853 2222 6788899999999999999999999998 67754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=6.9e-07 Score=83.94 Aligned_cols=165 Identities=13% Similarity=0.008 Sum_probs=120.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CcCH----HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC-CC----HhHHHH
Q 040279 409 LIDGLCKNNCVQEAVKLFHMLEMNKF-EFGI----EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV-PT----VVTYSI 478 (626)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 478 (626)
.+..+...|++++|..+++....... .++. ..+..+...+...|++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788899999999988775431 1221 13334666677778999999999988763211 22 236889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CCCCCC-HHHHH
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKN-----GCAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAEPE--RNLVPD-DTTFS 549 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~p~-~~~~~ 549 (626)
++.+|...|++++|+..++++.+. +..+. ..++..++..|.+.|++++|..+++++++.. .+..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998841 11222 2377889999999999999999999987510 111222 67899
Q ss_pred HHHHHHHccCC-HhHHHHHHHHHHh
Q 040279 550 IVVDLLAKDEK-YHECSAVSKSSYR 573 (626)
Q Consensus 550 ~l~~~~~~~g~-~~~A~~~~~~~~~ 573 (626)
.++.++.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999999863
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.8e-08 Score=81.45 Aligned_cols=105 Identities=13% Similarity=0.015 Sum_probs=83.3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLM 515 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (626)
.+...+..+...+.+.|++++|+..|+++.... +.+...|..+..+|...|++++|++.|+++.+.. +.+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 345567777788888888888888888888753 3357788888888888888888888888888864 44567888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCCCHH
Q 040279 516 HGFLQNNKTSKVVELLHKMAEPERNLVPDDT 546 (626)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 546 (626)
.+|...|++++|...|+++++ +.|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~----l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ----HSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH----HCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH----hCCCHH
Confidence 888888888888888888888 667765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.3e-07 Score=83.39 Aligned_cols=163 Identities=12% Similarity=0.024 Sum_probs=115.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHhcccCC---CCCC--HhH
Q 040279 406 YNILIDGLCKNNCVQEAVKLFHMLEMNKFEFG-----IEIFNCLIDGLCKAGRLDNAWELFHKLPQKG---LVPT--VVT 475 (626)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~ 475 (626)
+...+..+...|++++|...++...+...... ...+..+...+...|++++|+..+++..+.. ..+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455566777888888887776665432211 1223345566677889999999888876521 1111 447
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-----
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKN--GCAPN----VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD----- 544 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~----- 544 (626)
|+.++..|...|++++|...++++.+. ..+.+ ..++..++..|...|++++|..+++++++ +.++
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~----~~~~~~~~~ 233 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE----ISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHTTBCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH----HHHhcCcHH
Confidence 888899999999999999999988731 01111 15788888899999999999999999876 2222
Q ss_pred --HHHHHHHHHHHHccCCHhHH-HHHHHHHH
Q 040279 545 --DTTFSIVVDLLAKDEKYHEC-SAVSKSSY 572 (626)
Q Consensus 545 --~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 572 (626)
..++..++.+|.+.|++++| ...++++.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788999999999999999 78788875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-07 Score=78.06 Aligned_cols=129 Identities=10% Similarity=0.042 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+..+...+...|++++|...|++..+.. +.+..++..++.++...|++++|.+.+++..+.. +.+...+..++.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456677778888999999999999888752 3367888889999999999999999999998864 5567788899999
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHH--HHHHHHHccCCHhHHHHHHHHHH
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVP-DDTTFS--IVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+...|++++|...++++.+ +.| +...+. ..+..+.+.|++++|.+.+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVK----VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999988 566 445553 34444778899999999998874
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.8e-08 Score=81.00 Aligned_cols=96 Identities=9% Similarity=-0.077 Sum_probs=70.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSI 550 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~ 550 (626)
+...+..+...+...|++++|+..|+++.+.+ +.+...|..+..+|...|++++|+..|+++++ +.| +...+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV----MDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCchHHHH
Confidence 34556667777777788888888887777753 44666777777777788888888888888777 556 4566777
Q ss_pred HHHHHHccCCHhHHHHHHHHHH
Q 040279 551 VVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 551 l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
++.+|...|++++|.+.|+++.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 7777888888888888887775
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=6.9e-06 Score=77.15 Aligned_cols=221 Identities=11% Similarity=0.029 Sum_probs=140.2
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 040279 347 LNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAG-QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKN-N-CVQEAV 423 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~ 423 (626)
+..++|++++++++..+ +.+...|+.--..+...+ .+++++..++.+.... +.+..+++.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 33456666666666552 224445555555555555 3666666666666543 33455555555555444 4 666777
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH--------HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC-------
Q 040279 424 KLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLD--------NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK------- 488 (626)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------- 488 (626)
.+++.+.+.. +.+...|+.-..++.+.|.++ ++++.++++.+..+ -|...|+....++.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHH
Confidence 7777776554 445566655544444444444 78888888887643 377788887777777765
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHhhcCCC--CC-CCCH
Q 040279 489 LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT--------------------SKVVELLHKMAEPER--NL-VPDD 545 (626)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~~--~~-~p~~ 545 (626)
++++++.+++++... +-|...|+.+...+.+.|+. .+...+...+..... +. .++.
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 688999999988864 55778888887777776654 344444444443100 01 3567
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..+..++++|...|+.++|.+.++.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 889999999999999999999999974
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.3e-07 Score=84.23 Aligned_cols=180 Identities=6% Similarity=-0.079 Sum_probs=119.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCC---C
Q 040279 74 PISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVR---P 150 (626)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~ 150 (626)
....+...+..+...|++++|+..+++.++.. +........+..+..++..+...|++++|+..+++....... +
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34556677888899999999999999988753 222222222222223456678889999999999999864211 1
Q ss_pred C--HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCC----C
Q 040279 151 D--VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRG----I 224 (626)
Q Consensus 151 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~ 224 (626)
. ..+++.++..|...|++++|+..|+++.......+........++..+...|...|++++|++.+++..+.. .
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 1 457889999999999999999999998732100000001122577778888888888888888888765431 0
Q ss_pred CC-CcchHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 040279 225 NP-AVVVCTTLIHGFCCAGNWEEV-NGLFIEML 255 (626)
Q Consensus 225 ~~-~~~~~~~li~~~~~~~~~~~a-~~~~~~~~ 255 (626)
.. -..+|..+..+|...|++++| ...+++..
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 00 134566677777777777777 55565554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-07 Score=73.64 Aligned_cols=119 Identities=14% Similarity=0.025 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|.+.+++..+.. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455666666777777777777777766542 2346667777777777777777777777777653 344666777777
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKY 561 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 561 (626)
.+...|++++|...++++.+ +.| +...+..++.++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALE----LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777776 455 455666666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7.2e-07 Score=71.13 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+..+...+...|++++|.+.++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455556666666666666666666665532 2245566666666666677777777776666643 3455566666666
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHc
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAK 557 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 557 (626)
+...|++++|...++++.+ ..| +...+..++.++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE----LDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHh
Confidence 6677777777777777665 444 34445555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.2e-07 Score=81.33 Aligned_cols=198 Identities=10% Similarity=-0.072 Sum_probs=142.3
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCC-------------
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTL-------INGFCRTGNLSVALRLHKKMVSGDYEN------------- 185 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~------------- 185 (626)
++ ..++...|.+.|.++.... +-....|..+ ..++...++..+++..++.........
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 44 5799999999999999884 4467888888 677777777777877777776532100
Q ss_pred -CccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 040279 186 -GLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPN-- 262 (626)
Q Consensus 186 -~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 262 (626)
...+..-......+...+...|++++|.++|+.+...+ |+......+...+.+.++|++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 00011113345567788889999999999999888754 433366667778889999999999998655431 111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 040279 263 LLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD--RFTYNSLMDGYCLVGRIDTAREIFLSMHSKG 328 (626)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 328 (626)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23677778889999999999999999875433243 2345566677888899999999999988874
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=77.62 Aligned_cols=108 Identities=14% Similarity=0.002 Sum_probs=77.6
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 426 FHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCA 505 (626)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (626)
++++.... +.+...+..+...+...|++++|+..|+++.... +.+...|..+..+|...|++++|++.|+++.+.+ +
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 34444332 3345566667777778888888888888877642 2357777778888888888888888888887753 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 506 PNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+...+..+..+|...|++++|...|+++++
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777788888888888888888888876
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=4e-07 Score=87.23 Aligned_cols=132 Identities=9% Similarity=-0.030 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT--------------VVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
+...+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344566666667777777777777777666321111 478888999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHH-HHHHHHHHh
Q 040279 503 GCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHEC-SAVSKSSYR 573 (626)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 573 (626)
. +.+...+..+..+|...|++++|+..|+++++ +.| +...+..++.++.+.|++++| .+.++++..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ----LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 55678899999999999999999999999998 777 567888899999999999998 456677643
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.2e-07 Score=73.60 Aligned_cols=117 Identities=7% Similarity=-0.046 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
+...+..+...+...|++++|...|++..+.. +.+...+..++.++...|++++|.+.++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34555566666666666666666666666542 2245566666666666677777777776666643 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccC
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDE 559 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 559 (626)
++...|++++|.+.++++.+ ..|+ ...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD----LDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHhc
Confidence 66677777777777776665 4453 345555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.9e-07 Score=87.05 Aligned_cols=193 Identities=11% Similarity=-0.038 Sum_probs=120.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 367 TVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666677777777777777777776642 3356677777777778888888888887777654 456677777888
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040279 447 GLCKAGRLDNAWELFHKLPQKGLVPTV-VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTS 525 (626)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 525 (626)
++...|++++|...|++..+.. |+. ..+...+....+ ..++.. +........+.+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 8888888888888888776632 211 111111111111 111111 2223333344455544444332 368999
Q ss_pred HHHHHHHHhhcCCCCCCCCHHH-HHHHHHHHHcc-CCHhHHHHHHHHHHh
Q 040279 526 KVVELLHKMAEPERNLVPDDTT-FSIVVDLLAKD-EKYHECSAVSKSSYR 573 (626)
Q Consensus 526 ~a~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~-g~~~~A~~~~~~~~~ 573 (626)
+|++.++++.+ ..|+... ...+...+.+. +++++|.++|+++..
T Consensus 153 ~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHE----GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGT----TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhc----cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999988 6776544 34444455554 778999999998753
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.3e-05 Score=71.77 Aligned_cols=115 Identities=9% Similarity=0.041 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH----
Q 040279 386 YAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNC-------VQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRL---- 454 (626)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---- 454 (626)
++++.++++.+.. +-|...++.....+.+.+. +++++..+++..... +.|...|+.+-..+.+.|+.
T Consensus 185 eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 185 SELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccc
Confidence 4455555554432 2344444444444444443 456666666555443 44555665555555544432
Q ss_pred ----------------HHHHHHHHhcccCC-----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 455 ----------------DNAWELFHKLPQKG-----LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 455 ----------------~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
........++...+ ..++...+..++..|...|+.++|.++++.+.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 23333333333321 1245667777777777777777888888777654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-06 Score=74.59 Aligned_cols=128 Identities=7% Similarity=-0.078 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHH
Q 040279 405 TYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLC 484 (626)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 484 (626)
.+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...|..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 45556666777788888888887776544 4466777777778888888888888888877642 235667778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhh
Q 040279 485 RKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH--GFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~ 535 (626)
..|++++|.+.++++.+.. +.+...+..+.. .+...|++++|...+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888887753 334445533333 3667788888887777654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=80.88 Aligned_cols=119 Identities=8% Similarity=0.034 Sum_probs=80.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH-HHhcCCH--HH
Q 040279 415 KNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG-LCRKGKL--EK 491 (626)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 491 (626)
..|++++|...++...... +.+...+..+...|...|++++|...|+++.+.. +.+...+..++.+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3566677777777666543 4466677777777777777777777777776642 2356666677777 6677777 78
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|...++++.+.+ +.+...+..+...+...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 888887777753 34566777777777788888888888888777
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.5e-07 Score=78.56 Aligned_cols=126 Identities=9% Similarity=0.094 Sum_probs=101.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH-H
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS-L 203 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 203 (626)
..+...|++++|+..+++..+.. +.+...+..+...+...|++++|+..|+++.+.+ +.+...+..+... +
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYAALATVLY 89 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 34567889999999999988774 4577889999999999999999999999998865 5667788888888 7
Q ss_pred HhcCCc--chHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 204 CKEGLV--DKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGP 259 (626)
Q Consensus 204 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 259 (626)
...|++ ++|...+++..+.. +.+...+..+...|...|++++|...|++..+..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 789998 99999999988764 33567888888999999999999999999988643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5.1e-08 Score=93.51 Aligned_cols=156 Identities=10% Similarity=-0.016 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh---------hHHHHHHhhhhhhh
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL---------TLNILINCFGNKER 125 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---------~~~~ll~~~~~l~~ 125 (626)
++++|...|+......+. +...|..++..+.+.|++++|+..|+++++. .|+.. .......++..++.
T Consensus 128 ~~~~A~~~~~~a~~~~p~-~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLE-QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEECCCCGGGCCHHHHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 455666666655443332 5678999999999999999999999999876 44431 11111233334567
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
.+...|++++|+..|+++++.. +.+..++..+..++...|++++|+..|+++++.+ |.+..++..+..++.+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHH
Confidence 8889999999999999998874 4478889999999999999999999999998876 6677888888888888
Q ss_pred cCCcchH-HHHHHHHhh
Q 040279 206 EGLVDKA-KELFLEMKG 221 (626)
Q Consensus 206 ~g~~~~A-~~~~~~~~~ 221 (626)
.|+.++| .+.+..|..
T Consensus 277 ~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 8888887 446666543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3e-07 Score=75.66 Aligned_cols=106 Identities=8% Similarity=-0.110 Sum_probs=76.6
Q ss_pred HHHhcccCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 040279 460 LFHKLPQKGLVP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPE 538 (626)
Q Consensus 460 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 538 (626)
.|+++... .| +...+..+...+...|++++|+..|+++.+.+ +.+...|..+..++...|++++|+..|+++++
T Consensus 6 ~l~~al~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 80 (142)
T 2xcb_A 6 TLAMLRGL--SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGAL-- 80 (142)
T ss_dssp ---CCTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred hHHHHHcC--CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 44444443 23 34556667777888888888888888887754 44667777788888888888888888888887
Q ss_pred CCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 539 RNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 539 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.| +...+..++.+|...|++++|.+.++++.
T Consensus 81 --~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 81 --MDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp --HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566 45677778888888888888888888875
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.9e-07 Score=80.26 Aligned_cols=164 Identities=10% Similarity=-0.033 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCH
Q 040279 54 INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRI 133 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~ 133 (626)
|++++|.+.++.+.. .+.....++..++..+...|++++|+..+++........+ .......++..++..+...|++
T Consensus 6 g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 6 HDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp -CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHcCCH
Confidence 489999996665543 3444677899999999999999999999998875211111 1111222333456788999999
Q ss_pred HHHHHHHHHHHHC----CCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC
Q 040279 134 KEATWLFKNMIAF----GVRP--DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG 207 (626)
Q Consensus 134 ~~A~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (626)
++|...+++.... +-.+ ....+..+...+...|++++|...+++........+. ......++..+...+...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHCc
Confidence 9999999987664 1111 2345778889999999999999999988643100000 1112334566777777888
Q ss_pred CcchHHHHHHHHhh
Q 040279 208 LVDKAKELFLEMKG 221 (626)
Q Consensus 208 ~~~~A~~~~~~~~~ 221 (626)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888877776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.3e-07 Score=78.87 Aligned_cols=162 Identities=11% Similarity=-0.048 Sum_probs=104.7
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC
Q 040279 128 CVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG 207 (626)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (626)
...|++++|.+.++.+... ......++..+...+...|++++|...+++........+. .+....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcC
Confidence 4578999999966655442 2235678889999999999999999999998762100000 2344567778888888899
Q ss_pred CcchHHHHHHHHhhC----CCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--hhhHHHHHHHHHhc
Q 040279 208 LVDKAKELFLEMKGR----GIN--PAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLG---PRPN--LLTFNVMIDCLCKG 276 (626)
Q Consensus 208 ~~~~A~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~ 276 (626)
++++|.+.+++..+. +-. .....+..+...+...|++++|...+++..... ..+. ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999998888876653 101 113446667777778888888888877765321 0111 12345566666677
Q ss_pred CCHHHHHHHHHHHHh
Q 040279 277 GKINEANGLLELMIQ 291 (626)
Q Consensus 277 ~~~~~a~~~~~~~~~ 291 (626)
|++++|...+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 777777766666543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.2e-07 Score=72.96 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=79.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--------
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-------- 544 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-------- 544 (626)
...+..++..+.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|++.++++++ +.|+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE----VGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH----hCcccchhhHHH
Confidence 4467778888999999999999999998864 45677888899999999999999999999887 4442
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 545 DTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 545 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
..++..++.++...|++++|++.|++++.
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 24677888999999999999999999863
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.7e-07 Score=72.15 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG--CAPN----VVTFN 512 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~ 512 (626)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++.+ ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667777888888888888888877742 2346777888888888888888888888877631 1111 13566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIV 551 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 551 (626)
.++.++...|++++|++.|++.++ ..|++.....+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~----~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS----EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh----hCcCHHHHHHH
Confidence 777788888888888888888887 66777665544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.8e-07 Score=84.24 Aligned_cols=194 Identities=9% Similarity=-0.060 Sum_probs=101.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040279 332 TVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILID 411 (626)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 411 (626)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666677777777776666642 2255666666666777777777777777766542 334556666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
++...|++++|...|+...... +.+...+...+....+..+...... ......+.+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 7777777777777776655332 1111111111111111111111111 1111123344333333222 2577777
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHhhc
Q 040279 492 ANDFLLYMEKNGCAPNVV-TFNTLMHGFLQN-NKTSKVVELLHKMAE 536 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 536 (626)
|++.+++..+. .|+.. ....+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777777664 44433 333333334333 567778888877765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.6e-07 Score=70.77 Aligned_cols=95 Identities=8% Similarity=-0.024 Sum_probs=65.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIV 551 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l 551 (626)
...|..++..+...|++++|++.|++..+.. +.+...|..+..++...|++++|+..++++++ +.| +...+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE----KDPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCcHHHHHHH
Confidence 3455666666777777777777777776653 44566677777777777777777777777776 556 35667777
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++...|++++|.+.++++.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHH
Confidence 777777777777777777765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-06 Score=67.54 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG 482 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (626)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|..+++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455666666777777777777777666543 3456667777777777777777777777776642 2356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 483 LCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 888888888888888777653 3345555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=70.59 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHH
Q 040279 153 ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCT 232 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 232 (626)
..+..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|++.+++..+.. +.+...+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 334444444444445555555444444433 2334444444444444444444444444444331 11233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 233 TLIHGFCCAGNWEEVNGLFIEMLD 256 (626)
Q Consensus 233 ~li~~~~~~~~~~~a~~~~~~~~~ 256 (626)
.+..++...|++++|.+.|++..+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444444444444444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-06 Score=69.48 Aligned_cols=97 Identities=10% Similarity=-0.014 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+.+ +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667777778888888888888877742 2356778888888888888888888888888763 4456777888888
Q ss_pred HHhcCCHHHHHHHHHHhhc
Q 040279 518 FLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~ 536 (626)
+...|++++|...++++++
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 8888888888888888877
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=8.3e-06 Score=76.27 Aligned_cols=189 Identities=11% Similarity=-0.031 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC--CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC-HHHHHHH
Q 040279 419 VQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG--RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK-LEKANDF 495 (626)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 495 (626)
+++++.+++.+.... +-+..+|+.-..++...+ .+++++.+++++.+.. +-|...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567777777777654 557777777777777777 4788888888888864 3377788877777777787 5888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHcc--
Q 040279 496 LLYMEKNGCAPNVVTFNTLMHGFLQN--------------NKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKD-- 558 (626)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-- 558 (626)
+.++++.+ +-|...|+.....+... +.++++++++.+++. +.| |...|..+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~----~~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF----TDPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhccC
Confidence 88888875 55777887777766554 457889999999988 778 567777666666655
Q ss_pred ---------CCHhHHHHHHHHHHhhccccccccCCc-hhhh----hhhheeccCC----ccchhccccCCCCCCchhHHH
Q 040279 559 ---------EKYHECSAVSKSSYRACLYVTIFQPSS-LGSM----IGCTVRLMPQ----PEMSDTLGDDGDGNAGPIILS 620 (626)
Q Consensus 559 ---------g~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~l----~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~ 620 (626)
+.++++++.++++. ...|+. |..+ +.......+. .+...++.+++|.-.++|.=+
T Consensus 243 ~~~~~~~~~~~l~~el~~~~ell-------e~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQ-------ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHH-------hhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 46789999999887 567887 5322 1111111122 223468888999998888655
Q ss_pred H
Q 040279 621 A 621 (626)
Q Consensus 621 ~ 621 (626)
.
T Consensus 316 ~ 316 (331)
T 3dss_A 316 R 316 (331)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-07 Score=83.54 Aligned_cols=128 Identities=13% Similarity=-0.052 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT----------------VVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
...+..+...+...|++++|+..|++..+.... + ...|..+..+|...|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345556666777777777777777777663211 2 26788888889999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHH-HHHHHH
Q 040279 502 NGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECS-AVSKSS 571 (626)
Q Consensus 502 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 571 (626)
.. +.+...+..+..+|...|++++|.+.|+++++ +.| +...+..+..++...|+.+++. ..+..+
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS----LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 55677888888999999999999999999988 667 5677778888888777777776 444554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-06 Score=68.88 Aligned_cols=119 Identities=13% Similarity=-0.034 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG 482 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (626)
...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+.. +.+...+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3455666667777777777777777766543 4456677777777778888888888887777642 2346677777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040279 483 LCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT 524 (626)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (626)
+...|++++|.+.+++..+.. +.+...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888877753 34566677777777666653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.8e-05 Score=71.15 Aligned_cols=181 Identities=9% Similarity=-0.042 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC-HHHHHHH
Q 040279 384 AGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNN--CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGR-LDNAWEL 460 (626)
Q Consensus 384 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 460 (626)
+++++.+++.+.... +.+..+|+.-...+.+.| .+++++.+++.+.+.. +-+...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344555555555432 334445554444444444 3566666666665544 3455555555555555555 4666666
Q ss_pred HHhcccCCCCCCHhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 040279 461 FHKLPQKGLVPTVVTYSIMIHGLCRK--------------GKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN----- 521 (626)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 521 (626)
++++++..+ -|...|+.....+... +.++++++.+.+.+... +-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 666665432 2455555555444433 34677888888887754 55667777666665554
Q ss_pred ------CCHHHHHHHHHHhhcCCCCCCCCHH-HHHHHHH---HHHccCCHhHHHHHHHHHH
Q 040279 522 ------NKTSKVVELLHKMAEPERNLVPDDT-TFSIVVD---LLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 522 ------g~~~~a~~~~~~~~~~~~~~~p~~~-~~~~l~~---~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++++++.++++.+ +.||.. ++..++. .....|..+++..++.++.
T Consensus 246 ~~~~~~~~l~~el~~~~elle----~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE----LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh----hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 356788888888888 777642 2222221 2224677788888888874
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.1e-07 Score=70.21 Aligned_cols=93 Identities=11% Similarity=0.003 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVD 553 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~ 553 (626)
.+..+...+.+.|++++|+..++++.+.. +.+...|..+..++...|++++|+..++++++ +.| +...+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDPKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHH
Confidence 35566677778888888888888887753 44667777788888888888888888888887 667 4667778888
Q ss_pred HHHccCCHhHHHHHHHHHH
Q 040279 554 LLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 554 ~~~~~g~~~~A~~~~~~~~ 572 (626)
++...|++++|.+.++++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 8888888888888888875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=4e-06 Score=65.89 Aligned_cols=109 Identities=10% Similarity=-0.013 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+..+...+...|++++|...+++..... +.+...+..++.++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445556666667777777777777766542 2246666667777777777777777777776653 3355666777777
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHH
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVV 552 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~ 552 (626)
+...|++++|.+.++++.+ ..|+ ...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK----HEANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT----TCTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH----cCCCCHHHHHHHH
Confidence 7777777777777777766 4553 34444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-06 Score=74.25 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
..+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.++.. +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444444445555555555555444421 1134444444444555555555555555444432 22344444444444
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 040279 519 LQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~ 536 (626)
...|++++|...|+++++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 455555555555554444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-06 Score=67.15 Aligned_cols=96 Identities=9% Similarity=0.031 Sum_probs=73.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC---HHHH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD---DTTF 548 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~---~~~~ 548 (626)
+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++++ ..|+ ...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~ 79 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN----VIEDEYNKDVW 79 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TSCCTTCHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCcccchHHHH
Confidence 35566677777888888888888888887753 44566777788888888888888888888877 4454 6677
Q ss_pred HHHHHHHHcc-CCHhHHHHHHHHHH
Q 040279 549 SIVVDLLAKD-EKYHECSAVSKSSY 572 (626)
Q Consensus 549 ~~l~~~~~~~-g~~~~A~~~~~~~~ 572 (626)
..++.++.+. |++++|.+.++++.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 7888888888 88888888888875
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=4.6e-07 Score=74.52 Aligned_cols=98 Identities=14% Similarity=-0.040 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
+...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|+..|++..+.+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34455566677777888888888888877642 2356777777888888888888888888887764 445667777778
Q ss_pred HHHhcCCHHHHHHHHHHhhc
Q 040279 517 GFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~ 536 (626)
++...|++++|...|+++++
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888776
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.4e-06 Score=68.58 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=70.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFS 549 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~ 549 (626)
.+...|..++..+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++++ +.| +...+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCchhHHHHH
Confidence 346667777777777777777777777777653 44566777777777777777777777777776 555 456677
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHh
Q 040279 550 IVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 550 ~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.++.++...|++++|.+.++++..
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777777753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.44 E-value=9.6e-07 Score=71.10 Aligned_cols=111 Identities=10% Similarity=0.081 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC--APN----VVTFN 512 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 512 (626)
..+..+...+...|++++|...|++..+.. +.+...+..++.++...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666665532 23455666666666666667776666666655320 111 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHH
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDL 554 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 554 (626)
.+..++...|++++|.+.++++.+ +.|+......+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA----EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 666667777777777777777766 45555555544444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-07 Score=82.96 Aligned_cols=155 Identities=14% Similarity=0.002 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH----------HHHHHhhhhhh
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL----------NILINCFGNKE 124 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~----------~~ll~~~~~l~ 124 (626)
+++.|...++......+ .....+..++..+.+.|++++|+..|+++++. .|+...+ .....++..++
T Consensus 19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 19 FQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ---CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 56666666553322111 14456778888899999999999999999875 2322200 00012223345
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
..+...|++++|+..+++.++.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHH
Confidence 66777788888888888877763 4456777777888888888888888888877654 455666666666666
Q ss_pred hcCCcchHH-HHHHHHh
Q 040279 205 KEGLVDKAK-ELFLEMK 220 (626)
Q Consensus 205 ~~g~~~~A~-~~~~~~~ 220 (626)
..++..++. ..+..+.
T Consensus 168 ~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 666555554 3444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-06 Score=69.80 Aligned_cols=99 Identities=10% Similarity=-0.044 Sum_probs=70.8
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLM 515 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (626)
.+...+..+...+...|++++|...|++..... +.+...|..++.++...|++++|...+++..+.+ +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 455666777777777777777777777776642 2346677777777777777777777777777753 44566777777
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 040279 516 HGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 516 ~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.++...|++++|...++++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777888888777777766
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.2e-06 Score=67.99 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFN 512 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (626)
+...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|++.+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4445555566666666666666666666553 233 4556666666666666666666666666542 33455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+..++...|++++|...++++++
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-05 Score=78.87 Aligned_cols=205 Identities=11% Similarity=-0.011 Sum_probs=132.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhHhcCCCCCH----------------hhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CC
Q 040279 45 LHENCKSGIINLNEARYFFGYMTHMQPSPPI----------------SSFNLLFGAVAKNRHYDAVISFYRKLVSIG-LL 107 (626)
Q Consensus 45 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~ 107 (626)
...+...| ++++|++.|..+++..+.... .++..++..|...|++++|...+.++.+.- ..
T Consensus 11 a~~l~~~~--~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 11 ARRLVNEK--QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHT--CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHCC--CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 44556666 999999999999886654221 247789999999999999999999876431 11
Q ss_pred CCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 108 PDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF----GVRP-DVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 108 p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
++......+.. .++..+...|+++.|..+++..... +..+ -..++..+...+...|++++|..+++++...-
T Consensus 89 ~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 89 AKSKTVKVLKT---LIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp CHHHHHHHHHH---HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 22222222211 1234566778999999999887643 2122 24567788999999999999999998876432
Q ss_pred CCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC----CCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040279 183 YENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR----GINPA--VVVCTTLIHGFCCAGNWEEVNGLFIEML 255 (626)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~ 255 (626)
...+. .+....++..++..|...|++++|...+++.... +.++. ...+..+...+...+++++|...|.+..
T Consensus 166 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 166 KKLDD-KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp TTSSC-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred Hhccc-chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11000 1234556777788888888888888888776542 11111 1334455555566677777766666554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-05 Score=62.63 Aligned_cols=110 Identities=14% Similarity=-0.016 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHH
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHG 482 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (626)
...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455666667777777777777777776543 4466677777777778888888888888777642 2346677777788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040279 483 LCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLM 515 (626)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 515 (626)
+...|++++|.+.+++..+.+ +.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 888888888888888887753 33444444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=3.3e-06 Score=66.89 Aligned_cols=99 Identities=12% Similarity=-0.062 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFL 519 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 519 (626)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++..+.+ +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556667778888888888888887752 2357778888888888888888888888888763 445677788888888
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCC
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVPD 544 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p~ 544 (626)
..|++++|+..++++++ +.|+
T Consensus 97 ~~g~~~~A~~~~~~al~----~~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL----SQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--------
T ss_pred HcCCHHHHHHHHHHHHH----hCcC
Confidence 88888888888888887 5564
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.9e-06 Score=65.22 Aligned_cols=98 Identities=14% Similarity=0.004 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAP--NVVTFNTL 514 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l 514 (626)
+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556667777777888888888888777642 2356677778888888888888888888888753 33 56777778
Q ss_pred HHHHHhc-CCHHHHHHHHHHhhc
Q 040279 515 MHGFLQN-NKTSKVVELLHKMAE 536 (626)
Q Consensus 515 ~~~~~~~-g~~~~a~~~~~~~~~ 536 (626)
..++... |++++|.+.+++++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 8888888 888888888888877
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.8e-06 Score=69.78 Aligned_cols=96 Identities=9% Similarity=0.007 Sum_probs=56.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIV 551 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l 551 (626)
...|..+...+...|++++|++.|++.++.. +.+...|..+..+|...|++++|+..++++++ +.| +...+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l 85 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV----VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHH
Confidence 4455555566666666666666666665542 33455556666666666666666666666665 445 34556666
Q ss_pred HHHHHccCCHhHHHHHHHHHHh
Q 040279 552 VDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+.+|...|++++|.+.|+++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 6666666666666666666544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-05 Score=66.01 Aligned_cols=96 Identities=13% Similarity=-0.056 Sum_probs=86.2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN----VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DD 545 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~ 545 (626)
.+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..+|...|++++|+..++++++ +.| +.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~ 99 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE----KDGGDV 99 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTSCCH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh----hCccCH
Confidence 35778889999999999999999999999985 466 57888899999999999999999999998 566 57
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 546 TTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..+..++.++...|++++|.+.++++.
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788999999999999999999999986
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.3e-06 Score=70.14 Aligned_cols=144 Identities=12% Similarity=0.002 Sum_probs=92.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCC-CC--
Q 040279 75 ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVR-PD-- 151 (626)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-- 151 (626)
..++..++..+...|++++|+..+++..+. .++.........++..++..+...|++++|...+++....... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLI--AKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--HHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 356788888889999999999999888754 1222222222333444667888899999999999887654100 11
Q ss_pred --HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 152 --VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 152 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
...+..+...+...|++++|...+++........+. .......+..+...+...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345777888888899999999988887643200000 112234455566666666666666666665543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.7e-06 Score=65.03 Aligned_cols=89 Identities=10% Similarity=0.055 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC----HHHHHHH
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNV---VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD----DTTFSIV 551 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l 551 (626)
++..+...|++++|.+.|+++.+.. +.+. ..+..++.++...|++++|...++++++ ..|+ ...+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS----RYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTSTTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH----HCCCCcccHHHHHHH
Confidence 3444555555555555555555432 1122 2444555555555555555555555554 3332 3445555
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.++...|++++|.+.++++.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.26 E-value=8.2e-06 Score=81.76 Aligned_cols=127 Identities=12% Similarity=-0.025 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC--------------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040279 440 IFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP--------------TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCA 505 (626)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (626)
.+..+...+.+.|++++|+..|+++++..... ....|..+..+|.+.|++++|+..++++++.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 34444455555555555555555554421110 14678888888899999999999999988864 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHH-HHHHH
Q 040279 506 PNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSA-VSKSS 571 (626)
Q Consensus 506 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 571 (626)
.+...|..+..+|...|++++|+..|+++++ +.|+ ...+..+..++.+.|++++|.+ .++++
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~----l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE----VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999999988 7774 5677888888888888887764 34444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.3e-05 Score=78.17 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-C-C--
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKN--GC--APN-VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLV-P-D-- 544 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-p-~-- 544 (626)
.++..++..|...|++++|..+++++... +. .+. ..++..++..|...|++++|..+++++......+. | .
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 34455555555566666666555555432 11 111 23455555556666666666666555543100111 1 1
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 545 DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 545 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
...+..++..+...|++++|...+.++.
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1234444555555666666666665554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.24 E-value=5.7e-06 Score=67.51 Aligned_cols=92 Identities=9% Similarity=-0.099 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN--------V-----VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNL 541 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 541 (626)
.+......+.+.|++++|++.|++.++. .|+ . ..|..+..++.+.|++++|+..++++++ +
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----l 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----Y 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----h
Confidence 3455566667777777777777777764 233 2 2788888888889999999888888887 6
Q ss_pred -------CCC-HHHH----HHHHHHHHccCCHhHHHHHHHHHH
Q 040279 542 -------VPD-DTTF----SIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 542 -------~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.|+ ...| ...+.++...|++++|++.|+++.
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 886 4678 899999999999999999999996
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.3e-06 Score=69.57 Aligned_cols=135 Identities=9% Similarity=-0.011 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV-PT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC-APN----V 508 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~ 508 (626)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+..- .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566666777777777777777776552100 11 23677778888888888888888888765310 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 509 VTFNTLMHGFLQNNKTSKVVELLHKMAEPE--RNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
..+..+...+...|++++|.+.++++.+.. .+..+ ....+..++.++...|++++|.+.++++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 466778888889999999999998887510 11111 235677888999999999999999999863
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.8e-06 Score=69.18 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccC-------CC---------CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQK-------GL---------VP-TVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
..+......+.+.|++++|+..|++.+.. +. .| +...|..+..+|.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34445555555666666666666555442 00 00 122344444444444444444444444444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 502 NGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 502 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+ +.+...|..++.+|...|++++|...|+++++
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 32 22334444444444444444444444444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-05 Score=64.58 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC--CCC----HhHHH
Q 040279 404 STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGL--VPT----VVTYS 477 (626)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 477 (626)
..+..+...+...|++++|...++...... +.+...+..+...+...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566666777777777777777766544 44566777777777777888888877777766321 112 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
.++.++...|++++|.+.|+++.+. .|+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 7788888888888888888888774 45655555544433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1e-06 Score=88.29 Aligned_cols=155 Identities=12% Similarity=-0.001 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh---------hHHHHHHhhhhhhh
Q 040279 55 NLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFL---------TLNILINCFGNKER 125 (626)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---------~~~~ll~~~~~l~~ 125 (626)
++++|...|+......+. ....|..++..+.+.|++++|+..|+++++. .|+.. .......++..++.
T Consensus 249 ~~~~A~~~~~~~~~~~~~-~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLE-QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 445566555544433222 4567888999999999999999999999875 34321 11112233445667
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (626)
++.+.|++++|+..|+++++.. +.+..+|..+..++...|++++|+..|+++++.+ +.+...+..+..++.+
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 8999999999999999999875 4578889999999999999999999999999876 5677788888888888
Q ss_pred cCCcchHHH-HHHHHh
Q 040279 206 EGLVDKAKE-LFLEMK 220 (626)
Q Consensus 206 ~g~~~~A~~-~~~~~~ 220 (626)
.++.+++.+ .+..|.
T Consensus 398 ~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 398 AKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 888777653 444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=78.22 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=73.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSI 550 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~ 550 (626)
+..+|..+..+|.+.|++++|++.++++++.. +.+...+..+..+|...|++++|++.|+++++ +.| +...+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~----l~P~~~~~~~~ 346 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE----IAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHH
Confidence 45678888888999999999999999998864 44677888888899999999999999999988 677 4667777
Q ss_pred HHHHHHccCCHhHHHHH
Q 040279 551 VVDLLAKDEKYHECSAV 567 (626)
Q Consensus 551 l~~~~~~~g~~~~A~~~ 567 (626)
+..++...++.+++.+.
T Consensus 347 l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.4e-05 Score=62.66 Aligned_cols=92 Identities=13% Similarity=0.052 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTV---VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPN---VVTFNTLMH 516 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 516 (626)
.+...+...|++++|...|+++.+... .+. ..+..++.++...|++++|...++++.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 345566677777777777777766321 122 466667777777777777777777777642 223 455666777
Q ss_pred HHHhcCCHHHHHHHHHHhhc
Q 040279 517 GFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~ 536 (626)
++...|++++|...++++++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777776
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=7.7e-05 Score=76.44 Aligned_cols=149 Identities=7% Similarity=0.006 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC----------HHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc
Q 040279 417 NCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGR----------LDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK 486 (626)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 486 (626)
...++|+..++.+.... +-+..+|+.-..++...|+ ++++++.++++.+.. +.+..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34567888888888765 4566777776666766666 899999999999864 34788999988889999
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHcc----
Q 040279 487 G--KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN-KTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKD---- 558 (626)
Q Consensus 487 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---- 558 (626)
| +++++++.++++.+.+ +-|..+|+.-..++.+.| .+++++++++++++ ..| +...|.....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~----~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT----RNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT----TTCCCHHHHHHHHHHHHHHSCCC
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH----HCCCCccHHHHHHHHHHhhcccc
Confidence 9 7799999999999976 568899999999999999 89999999999998 677 678888888887663
Q ss_pred ----------CCHhHHHHHHHHHH
Q 040279 559 ----------EKYHECSAVSKSSY 572 (626)
Q Consensus 559 ----------g~~~~A~~~~~~~~ 572 (626)
++++++.+.++++.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHH
Confidence 66899999998885
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-05 Score=66.90 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 040279 403 LSTYNILIDGLCKNNCVQEAVKLFHMLEMN--------K---------FEFGIEIFNCLIDGLCKAGRLDNAWELFHKLP 465 (626)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 465 (626)
...+......+.+.|++++|+..|+..... . .+.+...|..+..+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666777777777777777766543 0 02233566677777777777777777777777
Q ss_pred cCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 466 QKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 466 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
+.. +.+...|..++.+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 642 234667777777777777777777777777764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.14 E-value=5.9e-06 Score=83.16 Aligned_cols=122 Identities=14% Similarity=0.038 Sum_probs=97.5
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
.++..+...|++++|+..|++.++.. +.+..++..+..++.+.|++++|++.++++++.+ +.+...+..+..
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~ 82 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYRRAA 82 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 34567888999999999999998874 4468889999999999999999999999999876 667888999999
Q ss_pred HHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHH--HHhcCCHHHHHHHHH
Q 040279 202 SLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG--FCCAGNWEEVNGLFI 252 (626)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 252 (626)
+|...|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988763 2245566666665 778889999998887
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.2e-06 Score=66.61 Aligned_cols=85 Identities=18% Similarity=0.035 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHhcccCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 451 AGRLDNAWELFHKLPQKG--LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
.|++++|+..|++.++.+ -+.+...+..+..+|...|++++|++.+++..+.. +.+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666532 12234456666666666666666666666666643 334556666666666666666666
Q ss_pred HHHHHhhc
Q 040279 529 ELLHKMAE 536 (626)
Q Consensus 529 ~~~~~~~~ 536 (626)
..++++++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.3e-06 Score=79.42 Aligned_cols=145 Identities=10% Similarity=0.023 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHH
Q 040279 404 STYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGL 483 (626)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 483 (626)
..+..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 345555666666777777777777665432 22111 112223333322221 13677778888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHH-HHccCCH
Q 040279 484 CRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDL-LAKDEKY 561 (626)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~ 561 (626)
.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++ +.|+ ...+..+..+ ....+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~----l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK----YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887753 44667788888888888888888888888877 6664 3445555554 2345566
Q ss_pred hHHHHHHHHHH
Q 040279 562 HECSAVSKSSY 572 (626)
Q Consensus 562 ~~A~~~~~~~~ 572 (626)
+++.+.|+++.
T Consensus 316 ~~a~~~~~~~l 326 (338)
T 2if4_A 316 QKQKEMYKGIF 326 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 67777777764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.10 E-value=7.1e-06 Score=82.54 Aligned_cols=158 Identities=8% Similarity=-0.049 Sum_probs=106.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHH
Q 040279 411 DGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLE 490 (626)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 490 (626)
..+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|++.++++.+.. +.+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34556788888888888877654 4567888888888889999999999998888753 335778888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HhhcCCCCC--------CCCHHHHH
Q 040279 491 KANDFLLYMEKNGCAPNVVTFNTLMHG--FLQNNKTSKVVELLH-----------KMAEPERNL--------VPDDTTFS 549 (626)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~-----------~~~~~~~~~--------~p~~~~~~ 549 (626)
+|++.++++.+.. +.+...+..+..+ +.+.|++++|++.++ +..+..... ......+.
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 9999999988753 3344566666655 778899999999988 443311110 01234456
Q ss_pred HHHHHHHccCCHhH--HHHHHHHH
Q 040279 550 IVVDLLAKDEKYHE--CSAVSKSS 571 (626)
Q Consensus 550 ~l~~~~~~~g~~~~--A~~~~~~~ 571 (626)
.++..+.+.+.+.+ +..++.++
T Consensus 171 ~lie~l~~~~~l~e~~v~~L~~~a 194 (477)
T 1wao_1 171 ELMQWYKDQKKLHRKCAYQILVQV 194 (477)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHH
Confidence 66677766666543 33355554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.3e-06 Score=66.51 Aligned_cols=85 Identities=12% Similarity=0.018 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCH
Q 040279 485 RKGKLEKANDFLLYMEKNG--CAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKY 561 (626)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 561 (626)
..|++++|+..|++.++.+ -+.+...+..+..+|...|++++|+..++++++ +.| +...+..++.++...|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK----QFPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHcCCH
Confidence 4688999999999999863 133456888999999999999999999999998 677 578899999999999999
Q ss_pred hHHHHHHHHHHh
Q 040279 562 HECSAVSKSSYR 573 (626)
Q Consensus 562 ~~A~~~~~~~~~ 573 (626)
++|.+.++++..
T Consensus 78 ~~A~~~~~~al~ 89 (117)
T 3k9i_A 78 EQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-05 Score=64.96 Aligned_cols=94 Identities=10% Similarity=-0.054 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC-------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT-------------VVTYSIMIHGLCRKGKLEKANDFLLYMEKN----- 502 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 502 (626)
+......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344455556666666666666666653 222 238889999999999999999999999884
Q ss_pred CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 503 GCAPN-VVTF----NTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 503 ~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+.|+ ...| .....++...|++++|+..|+++++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11455 4577 8889999999999999999999987
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.06 E-value=8.5e-06 Score=78.00 Aligned_cols=150 Identities=7% Similarity=-0.051 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040279 439 EIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGF 518 (626)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 518 (626)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34455555555666666666666665552 222221 112222333222111 13788899999
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCchhhhhhhheecc
Q 040279 519 LQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSSLGSMIGCTVRLM 597 (626)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 597 (626)
.+.|++++|+..++++++ +.| +...+..++.+|...|++++|.+.|+++.. ..+..+..+..+........
T Consensus 241 ~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~----l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLT----EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK----YAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HTTTCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998 677 578899999999999999999999999852 12223333333322211222
Q ss_pred CC----ccchhccccCCCCCCc
Q 040279 598 PQ----PEMSDTLGDDGDGNAG 615 (626)
Q Consensus 598 ~~----~~~~~~~~~~~p~~~~ 615 (626)
+. ....+++++..|+++.
T Consensus 313 ~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHhhCCCCCCCC
Confidence 22 3345677888888764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.6e-05 Score=76.47 Aligned_cols=171 Identities=12% Similarity=-0.012 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC--
Q 040279 385 GYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNC----------VQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAG-- 452 (626)
Q Consensus 385 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 452 (626)
++|.+.++++.... +.+...|+.--.++...|+ +++++..++.+.+.. +-+..+|+.-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 34455555555432 2233344443333433344 667777777766554 446666666666666667
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKG-KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN---------- 521 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---------- 521 (626)
+++++++.++++.+... -+...|+.-..++.+.| .++++++.++++++.+ +-|...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 56777777777777532 36677777777777777 7777777777777764 44667777766665552
Q ss_pred ----CCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhH
Q 040279 522 ----NKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHE 563 (626)
Q Consensus 522 ----g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 563 (626)
+.++++++++.+++. +.| +...|..+..++.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~----~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFF----TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHH----HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHh----hCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999998 778 56889888999988888555
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.8e-06 Score=64.72 Aligned_cols=94 Identities=5% Similarity=-0.040 Sum_probs=73.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-------
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD------- 544 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------- 544 (626)
+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|++.++++++ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR----YTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCccHHHHH
Confidence 45677888888889999999999999988864 45677888888899999999999999999988 6675
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHH
Q 040279 545 DTTFSIVVDLLAKDEKYHECSAVSKS 570 (626)
Q Consensus 545 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 570 (626)
...+..++.++...|++++|.+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 45566667777777766666555444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.97 E-value=7.9e-05 Score=72.07 Aligned_cols=139 Identities=7% Similarity=-0.076 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 040279 369 ITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGL 448 (626)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (626)
..+..+...+.+.|++++|...|++..+. .+... .....+ ...... +.+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHHHHH-HHHHHHHHHHHHHH
Confidence 44555666666677777777776666541 00000 000011 111011 33456788888888
Q ss_pred HHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 449 CKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
.+.|++++|+..++++++.. +.+...|..+..+|...|++++|++.|+++.+.. +.+...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888753 2357788888889999999999999999988863 345667777777777777776665
Q ss_pred H
Q 040279 529 E 529 (626)
Q Consensus 529 ~ 529 (626)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=6.8e-06 Score=66.89 Aligned_cols=89 Identities=9% Similarity=0.027 Sum_probs=70.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhcCCCCCCCC-HHHHHHHHH
Q 040279 485 RKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT----------SKVVELLHKMAEPERNLVPD-DTTFSIVVD 553 (626)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~ 553 (626)
+.+.+++|.+.+++..+.+ +.+...|..+..++...+++ ++|+..|+++++ +.|+ ...|..++.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~----ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH----hCcCcHHHHHHHHH
Confidence 4456788888888887764 55677777777777776654 599999999999 8884 688999999
Q ss_pred HHHccC-----------CHhHHHHHHHHHHhhccccccccCCc
Q 040279 554 LLAKDE-----------KYHECSAVSKSSYRACLYVTIFQPSS 585 (626)
Q Consensus 554 ~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~p~~ 585 (626)
+|...| ++++|.+.|+++. ..+|+.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl-------~l~P~~ 124 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAV-------DEQPDN 124 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-------HHCTTC
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHH-------HhCCCC
Confidence 998774 8999999999997 456664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00027 Score=57.17 Aligned_cols=107 Identities=9% Similarity=-0.045 Sum_probs=54.7
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVV 528 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 528 (626)
++++|+++|++..+.| +.... +...|...+..++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555543 11111 4444444455555555555555543 44455555555554 45555555
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHH
Q 040279 529 ELLHKMAEPERNLVPDDTTFSIVVDLLAK----DEKYHECSAVSKSSY 572 (626)
Q Consensus 529 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 572 (626)
++|+++.+ . -+...+..++..|.. .+++++|.++++++.
T Consensus 82 ~~~~~Aa~--~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 82 QYYSKACG--L---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHH--T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHc--C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 55555555 1 244455555555555 555566665555553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00012 Score=73.19 Aligned_cols=128 Identities=11% Similarity=-0.026 Sum_probs=88.5
Q ss_pred HHHcCCHHHHHHHHHhcccC---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHH
Q 040279 448 LCKAGRLDNAWELFHKLPQK---GLVPT----VVTYSIMIHGLCRKGKLEKANDFLLYMEKN---GCAPN----VVTFNT 513 (626)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~ 513 (626)
+..+|++++|+.++++.++. -+.|+ ..+++.|+.+|..+|++++|+.++++.++. -+.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44677788887777766541 11122 457888888888899999998888887642 11222 347788
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCC-CCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhhc
Q 040279 514 LMHGFLQNNKTSKVVELLHKMAEPE-RNLVPD----DTTFSIVVDLLAKDEKYHECSAVSKSSYRAC 575 (626)
Q Consensus 514 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 575 (626)
|...|...|++++|..+++++++.. .-+-|+ ..+...+..++...|++++|+..|+++.++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999998888876410 012233 3445677778888999999999999986544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00034 Score=56.61 Aligned_cols=113 Identities=14% Similarity=0.013 Sum_probs=79.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh---
Q 040279 129 VENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK--- 205 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 205 (626)
..+++++|+.+|++..+.| .++ .. +...|...+.+++|++.|++..+.+ ++..+..|...|..
T Consensus 7 ~~~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---------SGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSS
T ss_pred CccCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHcCCC
Confidence 3456788888888888776 222 33 6666767777778888888877654 35566677777776
Q ss_pred -cCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 040279 206 -EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC----AGNWEEVNGLFIEMLDLG 258 (626)
Q Consensus 206 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~ 258 (626)
.+++++|.+.|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 73 ~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 73 VKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 677777777777777764 55666677777766 677777777777776665
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.3e-05 Score=76.26 Aligned_cols=134 Identities=10% Similarity=0.031 Sum_probs=91.9
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC-----C-CCCC-HhH
Q 040279 85 VAKNRHYDAVISFYRKLVSI---GLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF-----G-VRPD-VIT 154 (626)
Q Consensus 85 ~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~ 154 (626)
+..+|++++|+.++++.++. -+.|+... ++..+..++..|..+|++++|+.++++.+.. | -.|+ ..+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLY---VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 55799999999999988743 12233222 3333445678899999999999999997653 2 1222 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 155 YGTLINGFCRTGNLSVALRLHKKMVSGDYE-NGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
++.|..+|...|++++|+.++++++..-.. .|...|....+...+..++...+.+++|+.+|..+++
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999988642100 0111233344455666677777777788777777765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00015 Score=53.45 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHH
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIV 551 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l 551 (626)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++.+ +.| +...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCCHHHHHHH
Confidence 4456666677777777777777777776653 33556667777777777777777777777776 455 35556666
Q ss_pred HHHHHcc
Q 040279 552 VDLLAKD 558 (626)
Q Consensus 552 ~~~~~~~ 558 (626)
+.++.+.
T Consensus 84 ~~~~~~~ 90 (91)
T 1na3_A 84 GNAKQKQ 90 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=3.6e-05 Score=62.62 Aligned_cols=96 Identities=5% Similarity=-0.059 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040279 451 AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK----------LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ 520 (626)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 520 (626)
.+.+++|++.+++..+.. +.+...|..+..++...++ +++|+..|++.++.+ +.+..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344566666666665532 2245556555555555544 458888888888753 3356677888888876
Q ss_pred c-----------CCHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 040279 521 N-----------NKTSKVVELLHKMAEPERNLVPDDTTFSIVV 552 (626)
Q Consensus 521 ~-----------g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 552 (626)
. |++++|++.|+++++ +.|+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~----l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD----EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH----hCCCCHHHHHHH
Confidence 6 489999999999998 889866554433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00018 Score=56.15 Aligned_cols=79 Identities=8% Similarity=-0.007 Sum_probs=44.1
Q ss_pred HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 456 NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
.|+..|++..+.. +.+...+..+..+|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555432 2245555566666666666666666666665542 3344555556666666666666666666655
Q ss_pred c
Q 040279 536 E 536 (626)
Q Consensus 536 ~ 536 (626)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00015 Score=56.62 Aligned_cols=78 Identities=9% Similarity=-0.050 Sum_probs=44.1
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 422 AVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
|+..|+...... +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 3445555666666666666666666666665532 22345555666666666666666666666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00019 Score=55.39 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 507 NVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+...+..+...+...|++++|++.++++++ +.| +...+..++.++.+.|++++|.+.++++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456788889999999999999999999998 667 57889999999999999999999999997
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00031 Score=53.03 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=42.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+...+..+..+|...|++++|++.|+++.+.+ +.+...|..+..+|...|++++|.+.++++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666777777777777777766653 33455666666677777777777777776665
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00069 Score=49.80 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHG 517 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 517 (626)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4456666667777777777777777776642 2346667777777777777777777777777653 3345566666655
Q ss_pred HHh
Q 040279 518 FLQ 520 (626)
Q Consensus 518 ~~~ 520 (626)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00046 Score=52.07 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 505 APNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 505 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+.+...+..+..+|...|++++|+..|+++++ +.| +...|..++.+|...|++++|.+.++++.+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVE----TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44677899999999999999999999999998 677 467899999999999999999999999863
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0054 Score=57.55 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=62.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHH
Q 040279 470 VPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFS 549 (626)
Q Consensus 470 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~ 549 (626)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr----L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN----LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCcChHH
Confidence 4567788888777777799999999999998864 7877787888888889999999999999988 788877765
Q ss_pred HH
Q 040279 550 IV 551 (626)
Q Consensus 550 ~l 551 (626)
..
T Consensus 348 ~~ 349 (372)
T 3ly7_A 348 WI 349 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00054 Score=51.49 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVV-TFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+..+...|++++|++.++++.+.. +.+.. .+..+..++...|++++|.+.|+++++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445666677777777777766643 33445 666666677777777777777777766
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0047 Score=49.58 Aligned_cols=80 Identities=14% Similarity=0.033 Sum_probs=36.4
Q ss_pred HHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 040279 455 DNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKG---KLEKANDFLLYMEKNGCAP--NVVTFNTLMHGFLQNNKTSKVVE 529 (626)
Q Consensus 455 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 529 (626)
..+.+-|.+..+.|. ++..+...+..++++.+ +.++++.++++..+.+ .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 334444444433332 34444444555555544 3335555555554432 12 12333344444455555555555
Q ss_pred HHHHhhc
Q 040279 530 LLHKMAE 536 (626)
Q Consensus 530 ~~~~~~~ 536 (626)
+++.+++
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555555
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.011 Score=55.37 Aligned_cols=49 Identities=8% Similarity=-0.087 Sum_probs=34.6
Q ss_pred CCCHhHHHHHHHHHHh--c---CChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 149 RPDVITYGTLINGFCR--T---GNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
+.+..+|...+++... . .+..+|+.+|+++++.+ |.....|..+..+|.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-------P~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-------PEFTYARAEKALVDI 244 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence 5677788877766543 3 34578999999999987 555667766655554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.012 Score=43.32 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=59.7
Q ss_pred CCChhhHHHHHHHHhhcC-CCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 040279 35 SSPETQLNEFLHENCKSG-IINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL 113 (626)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 113 (626)
|..+..+..+...+...+ ....++|..+|++.+..+|. ++.+...++..+.+.|++++|+..|+++++. .|+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~--~p~~~~~ 79 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS--NDPNLDR 79 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--CCTTCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccH
Confidence 344455555555554443 12379999999999999887 8899999999999999999999999999977 4553334
Q ss_pred HHH
Q 040279 114 NIL 116 (626)
Q Consensus 114 ~~l 116 (626)
..+
T Consensus 80 ~~i 82 (93)
T 3bee_A 80 VTI 82 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0063 Score=59.71 Aligned_cols=97 Identities=8% Similarity=0.042 Sum_probs=72.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC---CCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC-----C-CCCC
Q 040279 81 LFGAVAKNRHYDAVISFYRKLVSIG---LLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF-----G-VRPD 151 (626)
Q Consensus 81 l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~ 151 (626)
.+..+.++|++++|+.++++.+... +.|+.. .++..+..++..|..+|++++|+.++++++.. | ..|+
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~---~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINI---YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccch---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 3455678999999999999998542 233322 23344445678899999999999999988753 2 1222
Q ss_pred -HhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040279 152 -VITYGTLINGFCRTGNLSVALRLHKKMVS 180 (626)
Q Consensus 152 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 180 (626)
..+++.|...|...|++++|+.+++++.+
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45688999999999999999999998764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.023 Score=41.73 Aligned_cols=65 Identities=8% Similarity=0.017 Sum_probs=44.4
Q ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 471 PTVVTYSIMIHGLCRKGK---LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
+|...+..+..++...++ .++|..++++..+.+ +-+......+...+.+.|++++|+..|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666666666654444 577777777777753 44556667777777777777777777777776
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0028 Score=62.13 Aligned_cols=91 Identities=7% Similarity=-0.077 Sum_probs=68.1
Q ss_pred hcCChhHHHHHHHHHHHC---CCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHC-----C-CCCC-HhHHH
Q 040279 87 KNRHYDAVISFYRKLVSI---GLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAF-----G-VRPD-VITYG 156 (626)
Q Consensus 87 ~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~ 156 (626)
..|+|++|+.++++.++. -+.|+... ++..+.+++..|..+|++++|+.++++.+.. | -.|+ ..+++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVY---MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchH---HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 467899999999988742 22333322 2333345678899999999999999998753 2 1222 45689
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 040279 157 TLINGFCRTGNLSVALRLHKKMVS 180 (626)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~~~~ 180 (626)
.|..+|...|++++|+.+++++++
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999998865
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0054 Score=60.11 Aligned_cols=64 Identities=11% Similarity=-0.048 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKN-----G-CAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..+++.|+.+|..+|++++|+.++++.++- | -.|+ ..+++.|...|...|++++|..+++++.+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345666777777777777777776666531 1 0111 23455555566666666666665555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.23 Score=41.00 Aligned_cols=128 Identities=12% Similarity=0.101 Sum_probs=94.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040279 412 GLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK 491 (626)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (626)
.....|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+..+ +..+.-.|.-.|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345689999999988766 3678899999999999999999999999875 3455556777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 492 ANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
-.++-+.....| . ++....++...|+++++.+++.+.-+ .|.. +......|-.+.|.++.+++
T Consensus 79 L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r-----~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGS-----LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTC-----HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCC-----hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 777766666654 2 45556677788999999999988755 2211 11122367778888887776
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.012 Score=43.84 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=51.0
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVI-TYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
+..+...|++++|+..|+++++.. +.+.. .+..+..++...|++++|++.|+++++.+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456788999999999999999874 44667 89999999999999999999999999876
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.019 Score=46.16 Aligned_cols=80 Identities=9% Similarity=-0.009 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCC-C--CHHHHHHHHHHHHccCCHhH
Q 040279 490 EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN---KTSKVVELLHKMAEPERNLV-P--DDTTFSIVVDLLAKDEKYHE 563 (626)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~ 563 (626)
..+.+-|.+..+.+ +++..+...+.+++.+.+ +.++++.+++...+ .. | ..+.+..++-++.+.|++++
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~----~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP----KGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCccchHHHHHHHHHHHHHccCHHH
Confidence 33444444444443 345555555555555555 33455555555555 22 3 23445555555555555655
Q ss_pred HHHHHHHHHhh
Q 040279 564 CSAVSKSSYRA 574 (626)
Q Consensus 564 A~~~~~~~~~~ 574 (626)
|.++++++++.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 55555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.016 Score=56.76 Aligned_cols=99 Identities=13% Similarity=0.025 Sum_probs=66.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhC-----C-CCC-Ccc
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYE-NGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGR-----G-INP-AVV 229 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~ 229 (626)
.+..+.+.|++++|+.++++.+..... .+...+....+++.+...|...|++++|+.++++.... | ..| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355666789999999999999865311 12222344567788888888888888888888876542 1 111 124
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 230 VCTTLIHGFCCAGNWEEVNGLFIEMLD 256 (626)
Q Consensus 230 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 256 (626)
+++.|...|...|++++|+.++++.++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 566777777777777777777766653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.15 Score=45.90 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc-----CCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhc-
Q 040279 168 LSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE-----GLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCA- 241 (626)
Q Consensus 168 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 241 (626)
...|...++++++.+. .-.+...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++..
T Consensus 179 l~~A~a~lerAleLDP-----~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLWP-----SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHCT-----THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhCC-----CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 5688889999998761 011466888999999884 89999999999998874222477777788888774
Q ss_pred CCHHHHHHHHHHHHHCCCC--CChhhHHH
Q 040279 242 GNWEEVNGLFIEMLDLGPR--PNLLTFNV 268 (626)
Q Consensus 242 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 268 (626)
|+.+++.+.+++.+...+. |+....+.
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8999999999999887665 55444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.15 Score=55.01 Aligned_cols=131 Identities=14% Similarity=0.002 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 040279 372 NTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKA 451 (626)
Q Consensus 372 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (626)
..++..+.+.|.++.|.++.+. .. .-.......|++++|.++.+.+ .+...|..+.+.+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4555566666666666654421 11 0122334567777777765322 3556777777777777
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040279 452 GRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELL 531 (626)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 531 (626)
|+++.|.+.|.++.+ |..+...+...|+.+...++-+.....| + ++....+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~---~---~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG---K---FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC---c---hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776654 2334444445566665555544444433 1 222333445556666655555
Q ss_pred HHhh
Q 040279 532 HKMA 535 (626)
Q Consensus 532 ~~~~ 535 (626)
.++-
T Consensus 760 ~~~~ 763 (814)
T 3mkq_A 760 IKSQ 763 (814)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 5543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.11 Score=46.58 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHH
Q 040279 130 ENRIKEATWLFKNMIAFGVRPD---VITYGTLINGFCRT-----GNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIID 201 (626)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (626)
.+....|...+++.++. .|+ ...|..++..|.+. |+.++|.+.|++.++.+ ...+..++.....
T Consensus 176 l~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln------P~~~id~~v~YA~ 247 (301)
T 3u64_A 176 PDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC------SAHDPDHHITYAD 247 (301)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC------CTTCSHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC------CCCCchHHHHHHH
Confidence 34567888999999887 455 66899999999994 99999999999999976 1124777888888
Q ss_pred HHHhc-CCcchHHHHHHHHhhCCCC--CCcchHHHH
Q 040279 202 SLCKE-GLVDKAKELFLEMKGRGIN--PAVVVCTTL 234 (626)
Q Consensus 202 ~~~~~-g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 234 (626)
.++.. |+.+.+.+.+++....... |+....+.+
T Consensus 248 ~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 248 ALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 88885 9999999999999987544 444444433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.04 Score=41.47 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=43.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG------CAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 545 (626)
+..-+..++..+...|++..|...|+.+.+.. -.+....+..+..++.+.|++++|..+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~----l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE----LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCC
Confidence 33444566666666677777777666665431 122345666777777777777777777777776 56643
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.13 E-value=9.9e-06 Score=77.10 Aligned_cols=424 Identities=14% Similarity=0.085 Sum_probs=201.9
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 040279 40 QLNEFLHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINC 119 (626)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 119 (626)
.|..+..+....+ .+.+|++.|-+. .|+..|..++.+..+.|++++-+..+.-..+..-.| ..-+.++-
T Consensus 56 VWs~LgkAqL~~~--~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~- 124 (624)
T 3lvg_A 56 VWSQLAKAQLQKG--MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIF- 124 (624)
T ss_dssp CSSSHHHHTTTSS--SCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHH-
T ss_pred HHHHHHHHHHccC--chHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHH-
Confidence 3444444444333 555555554322 244456666666666666666666665554442222 33333332
Q ss_pred hhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHH
Q 040279 120 FGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSII 199 (626)
Q Consensus 120 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (626)
+|.+.++..+-.+.+. .|+..-...++.-|...|.++.|.-+|..+.. |..|
T Consensus 125 ------ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------------~akL 176 (624)
T 3lvg_A 125 ------ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------------FGRL 176 (624)
T ss_dssp ------HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------------CTTT
T ss_pred ------HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------------HHHH
Confidence 3444444333222111 24444455566666666666665555544321 2233
Q ss_pred HHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 040279 200 IDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKI 279 (626)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 279 (626)
..++.+.|++..|.+.- ++ ..++.+|..+-.+|...+++.-|.-.--.++-. ......++..|-..|.+
T Consensus 177 AstLV~L~~yq~AVdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f 245 (624)
T 3lvg_A 177 ASTLVHLGEYQAAVDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYF 245 (624)
T ss_dssp SSSSSSCSGGGSSTTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCH
Confidence 33444445554444321 11 125667777777777777766665544444321 11222345556666666
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCC------CChhhHHHHHHHHHhcCChHHH
Q 040279 280 NEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSK-GCK------HTVVSYNILINGYCKILNVEEA 352 (626)
Q Consensus 280 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~A 352 (626)
++-+.+++.-.... ......|+-|.-.|++- ++++..+.++..-.+ +++ -....|.-++-.|.+..++|.|
T Consensus 246 ~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 246 EELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp TTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 66666666655321 22344555555555543 333333333322111 111 1234455566666666666655
Q ss_pred HHHHH-------------HHHHCCCCCChhhHHH---------------HHHHHHHcCCHHHHHHHHHHHHh--------
Q 040279 353 MSLYR-------------QIISNGVRQTVITYNT---------------LLSGLFQAGQAGYAQKLFDEMKL-------- 396 (626)
Q Consensus 353 ~~~~~-------------~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~-------- 396 (626)
...+- ++... ..+...|.. |+..+...=+...+.+++++.-.
T Consensus 324 ~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL 401 (624)
T 3lvg_A 324 IITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYL 401 (624)
T ss_dssp HHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGG
T ss_pred HHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHH
Confidence 43210 00000 112233333 33333222233333333333210
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHH------------HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040279 397 --YNVEPDLSTYNILIDGLCKNNCVQEAVK------------LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFH 462 (626)
Q Consensus 397 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 462 (626)
..-.-+..+-.++-+.|....+++.-+. +-+++.++ .-.+.-..-...|.+.++|++++.+.+
T Consensus 402 ~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~K 478 (624)
T 3lvg_A 402 RSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCK 478 (624)
T ss_dssp TSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 0001122333344445555555543322 22223322 122233333445667777887776543
Q ss_pred hcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040279 463 KLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLH 532 (626)
Q Consensus 463 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (626)
+=. .|.-.+.....+|+.+-|.++++-..+.| +...|...+-.|...=+++.++++--
T Consensus 479 kDk---------lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlElaW 536 (624)
T 3lvg_A 479 KDS---------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLETAW 536 (624)
T ss_dssp TTC---------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHHHH
T ss_pred hcc---------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHHHH
Confidence 311 12222334566788888888888888865 66778888887877777888777633
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.34 Score=39.92 Aligned_cols=126 Identities=18% Similarity=0.120 Sum_probs=83.7
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcC
Q 040279 128 CVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEG 207 (626)
Q Consensus 128 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 207 (626)
...|+++.|.++.+++ .+...|..|.......|+++-|...|++... +..+.-.|...|
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------~~~L~~Ly~~tg 74 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------FDKLSFLYLVTG 74 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------HHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------HHHHHHHHHHhC
Confidence 3468888888887765 2677888888888888998888888888632 345555666677
Q ss_pred CcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 040279 208 LVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLE 287 (626)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 287 (626)
+.++-.++-+....+| -++.....+...|+++++.++|.+..+ +....-.....|..+.|.++.+
T Consensus 75 ~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp CHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHH
Confidence 7777666666555543 355666667778888888888755422 1111222233566667777766
Q ss_pred HH
Q 040279 288 LM 289 (626)
Q Consensus 288 ~~ 289 (626)
.+
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 54
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.18 Score=39.94 Aligned_cols=107 Identities=16% Similarity=0.034 Sum_probs=77.6
Q ss_pred CCHhhHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCH-hhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHH
Q 040279 73 PPISSFNLLFGAVAKNRHY------DAVISFYRKLVSIGLLPDF-LTLNILINCFGNKERGLCVENRIKEATWLFKNMIA 145 (626)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 145 (626)
.|.++|-..+..+-+.|+. +..+++|+++... +.|+. ..+...+..+...+ .+...++.++|.++|+.+++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3778888888888888998 8888999988764 23332 22222322222111 22344899999999999987
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 146 FGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 146 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
.+ +-=...|......-.++|++..|.+++.+.+..+
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 63 3237778888888889999999999999999876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.14 Score=55.44 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=99.3
Q ss_pred HHHHcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH
Q 040279 377 GLFQAGQAGYAQK-LFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLD 455 (626)
Q Consensus 377 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 455 (626)
.....+++++|.+ ++..+ ++......++..+.+.|.+++|.++.+. +. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence 3345788888866 44221 1122336777788889999999877631 11 1123456789999
Q ss_pred HHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040279 456 NAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG-------CAPNVVTFNTLMHGFLQNNKTSKVV 528 (626)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~a~ 528 (626)
.|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.... ..-+...+..+.......|+++.|.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHH
Confidence 999997765 367899999999999999999999999875310 0112223333344444444444444
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 529 ELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 529 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
..+.+.-+ +...++.|.+.|++++|..+-++.
T Consensus 744 ~~~~~~g~-----------~~~a~~~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 744 NAYWIAGD-----------IQGAKDLLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp HHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHcCC-----------HHHHHHHHHHcCChHHHHHHHHHh
Confidence 44444332 334455566666666666666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.033 Score=42.00 Aligned_cols=62 Identities=18% Similarity=0.103 Sum_probs=52.3
Q ss_pred hhhhhhhhhcCCHHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040279 121 GNKERGLCVENRIKEATWLFKNMIAFG------VRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGD 182 (626)
Q Consensus 121 ~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 182 (626)
..++..+...|+++.|...|+...+.- -.+....+..+..++.+.|+++.|+..++++.+..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 346788899999999999999987741 12356788999999999999999999999998865
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.45 Score=36.75 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=80.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 345 KILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK 424 (626)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 424 (626)
-.|..++..++..+.... .+..-+|.++--....-+-+-..++++.+-+. -|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 356666667766666654 24444454444444444444444555444321 111 12344444444
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040279 425 LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGC 504 (626)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 504 (626)
.+-.+ ..+.+.+...++.+..+|+-|+-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44322 224555666677777778877777777775432 356777777777888888888888888887777764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.092 Score=40.44 Aligned_cols=81 Identities=9% Similarity=-0.006 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhcCCCCCCC--CHHHHHHHHHHHHccCCHh
Q 040279 488 KLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSK---VVELLHKMAEPERNLVP--DDTTFSIVVDLLAKDEKYH 562 (626)
Q Consensus 488 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 562 (626)
....+.+-|.+....| .++..+-..+.+++.+..+... ++.+++...+ . -.| .......++-++.+.|+++
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~--~-~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--K-GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--T-SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--c-CCcchHHHHHHHHHHHHHHhhhHH
Confidence 3444455555554444 3666666667777777666654 6677777665 1 123 3445566666777777777
Q ss_pred HHHHHHHHHH
Q 040279 563 ECSAVSKSSY 572 (626)
Q Consensus 563 ~A~~~~~~~~ 572 (626)
+|.++++.++
T Consensus 92 ~A~~~~~~lL 101 (126)
T 1nzn_A 92 KALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777776
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.68 Score=35.77 Aligned_cols=117 Identities=14% Similarity=0.134 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-CC----------------CCCHhHHHH
Q 040279 416 NNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK-GL----------------VPTVVTYSI 478 (626)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----------------~p~~~~~~~ 478 (626)
.|..++..+++.+.... .+..-+|.++.-....-+-+-..++++.+-.. .+ ..+....+.
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 45666666666555542 23444555554444444444445554444321 00 012233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 479 MIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 479 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
.+..+..+|+-++-.+++..+... .+|++..+..+..+|.+.|+..+|.++++++-+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344444444444444444443221 244444444444444444444444444444444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.00024 Score=67.83 Aligned_cols=237 Identities=11% Similarity=0.085 Sum_probs=159.6
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
++++...++..+|++-|-+. .|+..|..++.+..+.|.+++-++.+....+.. .++..=+.|+-+|
T Consensus 61 gkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--------ke~~IDteLi~ay 126 (624)
T 3lvg_A 61 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------RESYVETELIFAL 126 (624)
T ss_dssp HHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--------CSTTTTHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------cccccHHHHHHHH
Confidence 56777788888887655332 366678889999999999999999998887654 3344557789999
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------CCCCh
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLG--------------------PRPNL 263 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~ 263 (626)
++.++..+-.+.+. .|+..-...+..-|...|.++.|.-+|..+.... -..++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 99999877544331 3566677778888888888888877776543211 12366
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 040279 264 LTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGY 343 (626)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (626)
.||..+-.+|...+++.-|.-.--.+.-. +| ....++..|-..|.+++.+.+++...... ......|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 78999989999988887765543333322 12 23345667888899999999998877432 23566788888888
Q ss_pred HhcCChHHHHHHHHHHHHC-CCC------CChhhHHHHHHHHHHcCCHHHHH
Q 040279 344 CKILNVEEAMSLYRQIISN-GVR------QTVITYNTLLSGLFQAGQAGYAQ 388 (626)
Q Consensus 344 ~~~~~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 388 (626)
++- +.++.++.++....+ +++ -....|..++-.|.+-.+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 764 556666555543322 111 12345666666777777776554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.14 Score=39.44 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 040279 452 GRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEK---ANDFLLYMEKNGCAP--NVVTFNTLMHGFLQNNKTSK 526 (626)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 526 (626)
..+..+.+-|.+....|. ++..+-..+..++++..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344445555554444332 566666666667776665554 666777666643 23 22344445556777777777
Q ss_pred HHHHHHHhhcCCCCCCCC
Q 040279 527 VVELLHKMAEPERNLVPD 544 (626)
Q Consensus 527 a~~~~~~~~~~~~~~~p~ 544 (626)
|.++++.+++ +.|+
T Consensus 93 A~~~~~~lL~----~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQ----TEPQ 106 (126)
T ss_dssp HHHHHHHHHH----HCTT
T ss_pred HHHHHHHHHH----hCCC
Confidence 7777777777 6664
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.46 Score=37.59 Aligned_cols=107 Identities=11% Similarity=0.099 Sum_probs=71.0
Q ss_pred ccccHHHHHHHHHHHHhcCCc------chHHHHHHHHhhCCCCCCcc-hHHHHHH------HHHhcCCHHHHHHHHHHHH
Q 040279 189 SKTNIFSYSIIIDSLCKEGLV------DKAKELFLEMKGRGINPAVV-VCTTLIH------GFCCAGNWEEVNGLFIEML 255 (626)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~~~~~~a~~~~~~~~ 255 (626)
.+.|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|...|. .+...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356777888888888888888 8888888888764 455431 1111111 1123477888888888887
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040279 256 DLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPD 297 (626)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 297 (626)
+.+-.- ...|......-.++|++..|.+++......+.+|.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 653332 55666666777778888888888888887765433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.25 Score=39.93 Aligned_cols=116 Identities=9% Similarity=-0.019 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccC-CCCCCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQK-GLVPTV-------VTYSIMIHGLCRKGKLEKANDFLLYMEKN--GCAPNVVT 510 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~ 510 (626)
+..-+..+...|.++.|+-+.+.+... +..|+. .++..++.++...|++..|...|++.++. .+..+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344455666777777777777665442 122331 24555666777777777777777776542 11111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 511 FNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 511 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
...+. ....... . ....++.+.-..+..+|.+.|++++|+.+++.+
T Consensus 103 ~~~~~----~~ss~p~---------s--~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------S--QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccc----ccCCCcc---------c--ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11010 0000000 0 113345667777899999999999999999987
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.30 E-value=1.3 Score=35.90 Aligned_cols=108 Identities=8% Similarity=0.001 Sum_probs=71.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCC----
Q 040279 73 PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIG-LLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFG---- 147 (626)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 147 (626)
.+..++-.-+..+...|.|+.|+-+.+.+.... ..|+..+-..-...+..++..+..++++..|...|++.++..
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 344566667788889999999998888765331 234432222222222235788999999999999999964321
Q ss_pred --------------------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040279 148 --------------------VRPDVITYGTLINGFCRTGNLSVALRLHKKMVS 180 (626)
Q Consensus 148 --------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 180 (626)
...+...--.+..++.+.+++++|+.+++.+..
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 011123334577888899999999999998754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.24 E-value=2.7 Score=41.24 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=65.0
Q ss_pred hhhhhhhhcCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccccc--HH
Q 040279 122 NKERGLCVENRIKEATWLFKNMIAFGVRPD-----VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTN--IF 194 (626)
Q Consensus 122 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~ 194 (626)
.++..+...|++.+|..++.++...-...+ ...+...++.|...+++.+|..++.++........ .+++ ..
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~--~~~~lk~~ 219 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP--KYESLKLE 219 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS--CCHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC--CcHHHHHH
Confidence 456788889999999999999864311111 34566778889999999999999988743110000 1121 23
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhh
Q 040279 195 SYSIIIDSLCKEGLVDKAKELFLEMKG 221 (626)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (626)
.+...+..+...+++.+|-..|.++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455666777777888887777766643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.22 E-value=0.41 Score=37.53 Aligned_cols=80 Identities=10% Similarity=-0.024 Sum_probs=59.6
Q ss_pred CCChhhHHHHHHHHhhcC-CCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 040279 35 SSPETQLNEFLHENCKSG-IINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTL 113 (626)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 113 (626)
.+..++..++.-+++++. ..+..+++.+++.+...++.........|+-++.+.|+|++|+...+.+++. +|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHH
Confidence 344455555555566554 1346778999999988776556677778889999999999999999999987 7876555
Q ss_pred HHH
Q 040279 114 NIL 116 (626)
Q Consensus 114 ~~l 116 (626)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.08 E-value=7.1 Score=38.20 Aligned_cols=189 Identities=11% Similarity=0.090 Sum_probs=83.5
Q ss_pred CChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcC
Q 040279 347 LNVEEAMSLYRQIISN-----GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLC----KNN 417 (626)
Q Consensus 347 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 417 (626)
+++++|++.+..+.+. ...........++..|...++++...+.+..+.+..-. -......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 5677777766555432 12223445566777777778877776666555432111 1122223333221 122
Q ss_pred CHHH--HHHHHHHHHH---CCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCCCCC---HhHHHHHHHHHH
Q 040279 418 CVQE--AVKLFHMLEM---NKFEF---GIEIFNCLIDGLCKAGRLDNAWELFHKLPQ--KGLVPT---VVTYSIMIHGLC 484 (626)
Q Consensus 418 ~~~~--A~~~~~~~~~---~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~ 484 (626)
..+. -..+.+.+.. ..+-. .......|...+...|++.+|..++..+.. .|..+. ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1111111110 00001 111223455555566666666666665543 111111 223444455555
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 485 RKGKLEKANDFLLYMEKN--GCAPNV----VTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..+++.+|..++.++... ...+++ ..+...+..+...+++.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 566666666655554321 011111 1233444445555555555555555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.89 E-value=1 Score=46.94 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=31.6
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.|...|+++-|+++.++++. ..| +-.+|..|+.+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~----~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE----LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh----cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455666666666666665 555 3566666666666666666666666665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.47 E-value=3.6 Score=32.31 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=28.9
Q ss_pred CCHhHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 471 PTVVTYSIMIHGLCRKGKL---EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|+..+-..+..++.++.+. .+++.+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444455544432 23444555554432111112223333345555555555555555555
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.44 E-value=1.8 Score=33.53 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=27.6
Q ss_pred CCHhHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 471 PTVVTYSIMIHGLCRKGKL---EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
|+..+--.+..++++..+. .+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444332 23444444444432000122333333344455555555555555544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.41 E-value=0.18 Score=39.02 Aligned_cols=77 Identities=10% Similarity=-0.064 Sum_probs=57.8
Q ss_pred hhHHHHHHHHhhcCC-CCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040279 39 TQLNEFLHENCKSGI-INLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILI 117 (626)
Q Consensus 39 ~~~~~~l~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 117 (626)
++..++.-+++++.. .+...++.+++.+.+.++......+..|+-++.+.|+|+.|+...+.+++. +|+..-...|-
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~QA~~Lk 118 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHHHHHHH
Confidence 445555555555542 246678999999988776446778888999999999999999999999977 78766555553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.85 E-value=1.1 Score=46.65 Aligned_cols=126 Identities=15% Similarity=0.067 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHhhH--HHHHHhhhhhhhhhhhcC-CHHHHHHHHHHHHHC------CC
Q 040279 79 NLLFGAVAKNRH-YDAVISFYRKLVSIGLLPDFLTL--NILINCFGNKERGLCVEN-RIKEATWLFKNMIAF------GV 148 (626)
Q Consensus 79 ~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~--~~ll~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~------~~ 148 (626)
..++..+...|+ ++.|+.+++++.+. .|....+ ..++. .+...+ +--+|.+++.+.++. ..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~-------~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l 322 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMIT-------ILDHIETKELDMITILNETLDPLLSLLNDL 322 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHH-------HHTTCGGGHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHH-------HHHHhhhhhHHHHHHHHHHHHHhhhhhhhh
Confidence 344555555666 58899999999876 4543332 22221 111222 233555555554421 11
Q ss_pred CC-CH----------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHH
Q 040279 149 RP-DV----------ITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFL 217 (626)
Q Consensus 149 ~~-~~----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 217 (626)
++ +. ..+..-...+...|+++.|+++.++..... |.+..+|..|..+|...|+++.|+-.++
T Consensus 323 ~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 323 PPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 11 11 123333455667899999999999999875 7789999999999999999999999999
Q ss_pred HHh
Q 040279 218 EMK 220 (626)
Q Consensus 218 ~~~ 220 (626)
.++
T Consensus 396 ScP 398 (754)
T 4gns_B 396 SMP 398 (754)
T ss_dssp HSC
T ss_pred cCC
Confidence 876
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=4.8 Score=38.61 Aligned_cols=79 Identities=9% Similarity=0.092 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc---CCCCCCCCHHHHHHHHH
Q 040279 477 SIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE---PERNLVPDDTTFSIVVD 553 (626)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~p~~~~~~~l~~ 553 (626)
..++..+...|++++|...+..+.... +.+...+..++.++.+.|+..+|++.|+...+ .+.|+.|+..+-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344556667777777777777776653 55666777777777777777777777776532 12467777666544444
Q ss_pred HHH
Q 040279 554 LLA 556 (626)
Q Consensus 554 ~~~ 556 (626)
++.
T Consensus 254 il~ 256 (388)
T 2ff4_A 254 ILR 256 (388)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.77 E-value=1.1 Score=43.10 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhH
Q 040279 196 YSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLD-----LGPRPNLLTF 266 (626)
Q Consensus 196 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 266 (626)
...++..+...|+++++...+..+.... +.+...|..++.++...|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445555666666666666666655543 44566666666666666666666666665532 4666665543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.70 E-value=17 Score=34.64 Aligned_cols=98 Identities=8% Similarity=-0.059 Sum_probs=68.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCC--CCCCHhHH--
Q 040279 80 LLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFG--VRPDVITY-- 155 (626)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~-- 155 (626)
.++..|...|+|.+|..++.++.+.=-..|. -..++..|..-++.|...+++.++...+....... +.+++...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd--~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD--KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC--THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 5788999999999999999888753112222 35566666666788999999999999998875431 22343332
Q ss_pred --HHHHHHHH-hcCChHHHHHHHHHHH
Q 040279 156 --GTLINGFC-RTGNLSVALRLHKKMV 179 (626)
Q Consensus 156 --~~li~~~~-~~g~~~~A~~~~~~~~ 179 (626)
..-+..+. ..++|..|...|-+..
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22345556 7899999988887664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.69 E-value=4 Score=29.64 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 383 QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+.-+..+-++.+...++.|++....+.+.+|.+.+++..|.++++.++.+- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444566666666667777777777777778877778888888777776432 223445665554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.39 E-value=8.3 Score=43.18 Aligned_cols=51 Identities=6% Similarity=-0.059 Sum_probs=25.4
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040279 199 IIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEM 254 (626)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 254 (626)
++..+...+..+.+.++...... +...--.+..++...|++++|.+.|++.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33444445555554443332221 3333344455666667777777666553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.52 E-value=34 Score=36.75 Aligned_cols=184 Identities=11% Similarity=0.031 Sum_probs=90.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CcCHHHHHHHHHH
Q 040279 377 GLFQAGQAGYAQKLFDEMKLYNVEPDL--STYNILIDGLCKNNCVQEAVKLFHMLEMNKF-------EFGIEIFNCLIDG 447 (626)
Q Consensus 377 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~~ 447 (626)
+....|+.+++..+++.....+...+. ..-..+.-+....|..+++..++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 445667777777777665532101222 2223333344455655567766655443211 0111112222222
Q ss_pred H--HHcCCHHHHHHHHHhcccCCCCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHH
Q 040279 448 L--CKAGRLDNAWELFHKLPQKGLVPTVV----TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTL--MHGFL 519 (626)
Q Consensus 448 ~--~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~ 519 (626)
+ .-.++ +++...+..+... .+.. .-.+|...+.-.|+-+....++..+.+.. +......+ .-++.
T Consensus 463 la~~GS~~-eev~e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHhcCCCC-HHHHHHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 2 22333 3444555544432 1211 11133334445677777777777666531 33333333 33445
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCCHHH----HHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 520 QNNKTSKVVELLHKMAEPERNLVPDDTT----FSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..|+.+.+..+++.+.. ..++.. -..++-+|+..|+.....++++.+.
T Consensus 536 ~~g~~e~~~~li~~L~~-----~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 536 NYGRQELADDLITKMLA-----SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp TTTCGGGGHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 67787777777777765 122222 2244556777888666666777764
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.03 E-value=18 Score=33.09 Aligned_cols=119 Identities=12% Similarity=0.096 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHH----HHHHHHHHCCCCCCH
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEAT----WLFKNMIAFGVRPDV 152 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~----~~~~~~~~~~~~~~~ 152 (626)
.|.++..=|.+++++++|++++..-.. .+.+.|+...|. -+.+-..+.+.+++.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~ 92 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL----------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD 92 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH----------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCH
Confidence 344555566778888888887654331 122334433333 334555556777777
Q ss_pred hHHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHH
Q 040279 153 ITYGTLINGFCRTGNLS-VALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFL 217 (626)
Q Consensus 153 ~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 217 (626)
.....++..+.....-+ .=.++.+++++-....+.....++.....+...|.+.|++.+|+.-|-
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 77777777765533211 112233333221100000023466777788888888888887776553
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.61 E-value=19 Score=32.93 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=46.4
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRK---GKLEKANDFLLYMEKNGCAPNVVTFN 512 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (626)
-++.....+...|.+.|++.+|...|-.-.. -|...+..++.-+... |...++--+..+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~----~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R-------------- 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTH----DSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR-------------- 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH----HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC----ccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------
Confidence 3667778888888888888888887763221 1355555555544443 433332222111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 040279 513 TLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
.+-.|.-.|+...|..++....
T Consensus 194 -aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 -LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -HHHHHHHTTBHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCHHHHHHHHHHHH
Confidence 1223456677777777766654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.22 E-value=7.4 Score=28.28 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
+.-+..+-++.+......|++.+..+.+.+|.+.+++..|.++|+-+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555555555555566666666666666666666666655544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.19 E-value=16 Score=40.96 Aligned_cols=144 Identities=13% Similarity=0.019 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC-----------------
Q 040279 408 ILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV----------------- 470 (626)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------- 470 (626)
.++..+.+.+..+.+..+..-. +.+...--.+..++...|++++|.++|++.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence 3445555566666555543221 223333334556677777777777777765321 10
Q ss_pred ------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 040279 471 ------PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNV----VTFNTLMHGFLQNNKTSKVVELLHKMAEPERN 540 (626)
Q Consensus 471 ------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 540 (626)
.-..-|..++..+.+.|.++.+.++-...++...+.+. ..|..+.+.+...|++++|...+-.+..
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---- 966 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---- 966 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH----
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC----
Confidence 01234667778888899999999888887765322222 2577888899999999999998888766
Q ss_pred CCCCHHHHHHHHHHHHccCCH
Q 040279 541 LVPDDTTFSIVVDLLAKDEKY 561 (626)
Q Consensus 541 ~~p~~~~~~~l~~~~~~~g~~ 561 (626)
..--...+..++..+...|+.
T Consensus 967 ~~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 967 TPLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SSSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhCCCh
Confidence 222355666666655544443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.46 E-value=8 Score=29.85 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 383 QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+.-+..+-++.+...++.|++......+.+|.+.+++..|.++|+-++.+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344566666777777788888888888888888888888888888777443 233556666654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.21 E-value=26 Score=32.35 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=30.4
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcC
Q 040279 436 FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKG 487 (626)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 487 (626)
-++.....+...|.+.+++.+|...|- . |-.++...+..++.-+...+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 466677777888888888888888773 2 22233456655555554443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.92 E-value=49 Score=33.85 Aligned_cols=203 Identities=11% Similarity=-0.031 Sum_probs=115.7
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 040279 312 GRIDTAREIFLSMHSKGCKHTVVSYNILINGYC----KILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYA 387 (626)
Q Consensus 312 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 387 (626)
.+.+.|...+....... ..+......+-..+. ..+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 47899999998887653 224333333333332 3343556677777655442 3443344445555677999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 040279 388 QKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQK 467 (626)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 467 (626)
...|+.|.... .......--+..++...|+.++|..+|+.+... . ..|..+. ..+.|..-.. ...
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg~lA--a~~Lg~~~~~-----~~~-- 369 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVA--AQRIGEEYEL-----KID-- 369 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHH--HHHTTCCCCC-----CCC--
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHHHHH--HHHcCCCCCC-----CCC--
Confidence 99999886532 123333444566778899999999999988742 1 2343332 2233321000 000
Q ss_pred CCCCC---H---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 040279 468 GLVPT---V---VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMA 535 (626)
Q Consensus 468 ~~~p~---~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (626)
...+. . ..-...+..+...|....|...+..+.+. .+......+.......|.++.++.......
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~~ 440 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 01110 0 01122345577789999999888888764 233334455555567777877776655443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.35 E-value=14 Score=26.70 Aligned_cols=84 Identities=11% Similarity=0.016 Sum_probs=55.0
Q ss_pred hhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhh
Q 040279 49 CKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLC 128 (626)
Q Consensus 49 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~ 128 (626)
.-.|.+..++|..+-+.....+. ...+--.-+..+..+|+|++|..+.+... .||...|..+- -.
T Consensus 16 ~gTG~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc---------e~ 80 (116)
T 2p58_C 16 IGTGNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC---------EY 80 (116)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH---------HH
T ss_pred HHccchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH---------HH
Confidence 34566678888888777655433 22222233345668899998888776655 68877777663 34
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 040279 129 VENRIKEATWLFKNMIAFG 147 (626)
Q Consensus 129 ~~~~~~~A~~~~~~~~~~~ 147 (626)
+.|-.+++...+.++...|
T Consensus 81 rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 81 RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHTCHHHHHHHHHHHTTCC
T ss_pred hcccHHHHHHHHHHHHhCC
Confidence 5677777777777776665
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.20 E-value=37 Score=31.34 Aligned_cols=82 Identities=7% Similarity=0.013 Sum_probs=49.0
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040279 471 PTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSI 550 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 550 (626)
-|+.....+...|.+.+++.+|...|- .|-.+....+..++.-+...+...++--++-++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRa---------------- 193 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYCARA---------------- 193 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHH----------------
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHHHHH----------------
Confidence 467777888899999999999888773 232333456655555554443322222222221
Q ss_pred HHHHHHccCCHhHHHHHHHHHHh
Q 040279 551 VVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 551 l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
+--|.-.|+...|...++....
T Consensus 194 -VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 -VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHhCCHHHHHHHHHHHHH
Confidence 2235566788888887766543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.08 E-value=13 Score=28.78 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 419 VQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
.-+..+-++.+...+..|++.+....+.+|.+.+++..|.++|+-+..
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344455555555555556666666666666666666666666665554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 626 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 2e-07
Identities = 55/381 (14%), Positives = 107/381 (28%), Gaps = 31/381 (8%)
Query: 87 KNRHYDAVISFYRKLVSIGLLPDFL-TLNILINCFGNKERGLCVENRIKEATWLFKNMIA 145
+ ++A +L PD L +L + R+ + I
Sbjct: 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQC-------RRLDRSAHFSTLAIK 61
Query: 146 FGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK 205
P + + NL + ++ + I+
Sbjct: 62 --QNPLLAEAYS---------NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 110
Query: 206 EGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLT 265
+ + C G + + +PN
Sbjct: 111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170
Query: 266 FNVMI-DCLCKGGKINEANGLLELMIQRGLNPDRF-TYNSLMDGYCLVGRIDTAREIFLS 323
+ G+I A E + L+P+ Y +L + D A +L
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 324 MHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQ 383
S H V + L Y + ++ A+ YR+ I Y L + L + G
Sbjct: 229 ALSLSPNH-AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGS 286
Query: 384 AGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLF-HMLEMNKFEFGIEIFN 442
A+ ++ L + N L + + ++EAV+L+ LE+ +
Sbjct: 287 VAEAEDCYNTA-LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAHS 343
Query: 443 CLIDGLCKAGRLDNAWELFHK 463
L L + G+L A + +
Sbjct: 344 NLASVLQQQGKLQEALMHYKE 364
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.002
Identities = 43/320 (13%), Positives = 99/320 (30%), Gaps = 17/320 (5%)
Query: 45 LHENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSI 104
+ NL G + + A+++ ++
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 105 GLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCR 164
L N + C + L E + + L F
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 165 TGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGI 224
G + +A+ +K V+ + + +Y + + L + + D+A +L
Sbjct: 182 QGEIWLAIHHFEKAVT-------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 225 NPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANG 284
N AVV L + G + + ++L P + + + L + G + EA
Sbjct: 235 NHAVV-HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAED 292
Query: 285 LLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIF---LSMHSKGCKHTVVSYNILIN 341
++ + N+L + G I+ A ++ L + + +++ L +
Sbjct: 293 CYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE----FAAAHSNLAS 347
Query: 342 GYCKILNVEEAMSLYRQIIS 361
+ ++EA+ Y++ I
Sbjct: 348 VLQQQGKLQEALMHYKEAIR 367
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 626 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.24 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.14 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.07 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.75 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.67 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.63 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.59 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.54 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.54 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.52 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.39 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.31 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.26 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.08 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.06 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.02 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.78 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.68 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.62 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.5 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.49 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.22 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.06 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.54 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.36 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.27 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.25 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.04 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.55 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.36 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.93 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.73 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.78 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=6.6e-23 Score=201.18 Aligned_cols=383 Identities=11% Similarity=0.056 Sum_probs=304.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHH
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHG 237 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (626)
+...+.+.|++++|++.++++.+.. |.+..++..+..++.+.|++++|++.++++.+.. +-+..+|..+..+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~ 76 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4566778899999999999998875 5678888889999999999999999999988764 3356788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHH
Q 040279 238 FCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTA 317 (626)
Q Consensus 238 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 317 (626)
|...|++++|++.+....+.... +..............+....+........... .................+....+
T Consensus 77 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 77 YKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred hhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhh
Confidence 99999999999999998876443 44445555555555666666666555555543 23444445556666777888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 040279 318 REIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLY 397 (626)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 397 (626)
...+....... +.+...+..+...+...+++++|...+++..+.. +.+...+..+...+...|++++|...++.....
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 88888777664 2356777888888889999999999999988763 335677888888999999999999999988775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHH
Q 040279 398 NVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYS 477 (626)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 477 (626)
. +.+...+..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.+.++..... .+.+...+.
T Consensus 233 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 309 (388)
T d1w3ba_ 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhh
Confidence 4 4566777888888999999999999999888765 556788888999999999999999999988775 345677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVDLLA 556 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 556 (626)
.+..++...|++++|++.|++..+.. +.+..++..++.+|...|++++|.+.|+++++ +.|+ ...+..++.+|.
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----l~P~~~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT----TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHH
Confidence 88999999999999999999998753 44567888899999999999999999999988 7884 678899999988
Q ss_pred ccCC
Q 040279 557 KDEK 560 (626)
Q Consensus 557 ~~g~ 560 (626)
+.|+
T Consensus 385 ~~~D 388 (388)
T d1w3ba_ 385 EMQD 388 (388)
T ss_dssp HTCC
T ss_pred HcCC
Confidence 8775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.1e-22 Score=196.25 Aligned_cols=384 Identities=13% Similarity=0.054 Sum_probs=318.7
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 123 KERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 123 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
++..+.+.|++++|++.|+++++.. +-+..++..+..++.+.|++++|+..|+++++.+ |.+..++..+..+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~l~~~ 76 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 4567788999999999999998874 4468889999999999999999999999999876 6678899999999
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEA 282 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 282 (626)
|.+.|++++|++.+....+.. +.+...+..........+....+............. ...............+....+
T Consensus 77 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHH
T ss_pred hhhhccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhh
Confidence 999999999999999998864 334445555555566666666666666666554333 455556666677788888888
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 283 NGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
...+....... +.+...+..+...+...|+++.|...++...+... .+...+..+...+...|++++|+..+++....
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 88888877763 33567778888899999999999999999988743 36678889999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 040279 363 GVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFN 442 (626)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 442 (626)
. +.+...+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++...... +.+...+.
T Consensus 233 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 309 (388)
T d1w3ba_ 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cccchhhh
Confidence 4 3466778888999999999999999999998764 4467788899999999999999999999888665 66788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN 522 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (626)
.+...+...|++++|+..|++..+.. +.+..++..++.+|...|++++|.+.|+++++.. |-+..+|..++.+|.+.|
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999998853 2357789999999999999999999999999853 335778999999998887
Q ss_pred C
Q 040279 523 K 523 (626)
Q Consensus 523 ~ 523 (626)
|
T Consensus 388 D 388 (388)
T d1w3ba_ 388 D 388 (388)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7.5e-14 Score=132.06 Aligned_cols=243 Identities=12% Similarity=0.002 Sum_probs=162.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 040279 303 SLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAG 382 (626)
Q Consensus 303 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 382 (626)
.....+.+.|++++|...|+++.+..+. +..+|..+..++...|++++|+..++++.+.. +.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3445566777777777777777766422 45667777777777777777777777776652 234566666666777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040279 383 QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFH 462 (626)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 462 (626)
++++|.+.++..... .|+............. ..+.......+..+...+.+.+|...+.
T Consensus 102 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRY--TPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHh--ccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 777777777776653 2221110000000000 0000011112223344566777888887
Q ss_pred hcccCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 040279 463 KLPQKG-LVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNL 541 (626)
Q Consensus 463 ~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 541 (626)
++.+.. -.++..++..+...+...|++++|+..+++..+.. +.+..+|..++.++...|++++|.+.++++++ +
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~ 235 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE----L 235 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----H
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHH----H
Confidence 776532 12356778888889999999999999999988763 44677888899999999999999999999988 6
Q ss_pred CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 542 VP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 542 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
.| +..++..++.+|.+.|++++|.+.|+++.+
T Consensus 236 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 236 QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77 467888999999999999999999999864
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.3e-13 Score=127.54 Aligned_cols=225 Identities=13% Similarity=0.076 Sum_probs=145.6
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
..+.+.|++++|+..|+++++.. +.+..+|..++.++...|++++|+..|+++++.+ |.+...+..+...|.
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 27 LRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------PDNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-------ccccccccccccccc
Confidence 46788999999999999999874 4468889999999999999999999999998876 667888999999999
Q ss_pred hcCCcchHHHHHHHHhhCCCCCCcchH----------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHH
Q 040279 205 KEGLVDKAKELFLEMKGRGINPAVVVC----------------TTLIHGFCCAGNWEEVNGLFIEMLDLGPR-PNLLTFN 267 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 267 (626)
..|++++|.+.+++..... |+.... ...+..+...+.+.++.+.|.+..+..+. .+...+.
T Consensus 99 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~ 176 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred ccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence 9999999999999987652 221111 01112223334455555555555443221 2334455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 040279 268 VMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKIL 347 (626)
Q Consensus 268 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (626)
.+...+...|++++|...+++..... +-+...+..+...+...|++++|.+.|++..+... -+..++..+..+|.+.|
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g 254 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLG 254 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCC
Confidence 55555556666666666666555542 22344555555555566666666666655555421 13445555555555566
Q ss_pred ChHHHHHHHHHHHH
Q 040279 348 NVEEAMSLYRQIIS 361 (626)
Q Consensus 348 ~~~~A~~~~~~~~~ 361 (626)
++++|+..|++.++
T Consensus 255 ~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 255 AHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=3.6e-09 Score=100.64 Aligned_cols=231 Identities=10% Similarity=-0.015 Sum_probs=136.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCHHH
Q 040279 337 NILINGYCKILNVEEAMSLYRQIISN----GVRQT---VITYNTLLSGLFQAGQAGYAQKLFDEMKLYN----VEPDLST 405 (626)
Q Consensus 337 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 405 (626)
..+...+...|++..+...+.+.... +.... ...+..+...+...|+++.+...+....... .......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 33444555556666666655554321 11111 1233444556666777777777766665421 1122334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--cCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCC---HhHH
Q 040279 406 YNILIDGLCKNNCVQEAVKLFHMLEMN----KFE--FGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPT---VVTY 476 (626)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 476 (626)
+......+...++...+...+...... +.. .....+..+...+...|++++|...+++........+ ...+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 444555566677777777766544321 111 1123455566677888899999998888776422222 3445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC--CCCC----CCH
Q 040279 477 SIMIHGLCRKGKLEKANDFLLYMEK----NGCAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAEPE--RNLV----PDD 545 (626)
Q Consensus 477 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----p~~ 545 (626)
..+..++...|++++|...++++.. .+..|+ ..++..+..+|...|++++|.+.++++++.. .|.. -..
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~ 334 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 334 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHH
Confidence 6678888889999999998888764 233333 3467778888899999999999988876500 0111 012
Q ss_pred HHHHHHHHHHHccCCHhHHHHH
Q 040279 546 TTFSIVVDLLAKDEKYHECSAV 567 (626)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~A~~~ 567 (626)
..+..++..+...++.+++.+-
T Consensus 335 ~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 335 EAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHH
Confidence 3445566667777877777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.2e-09 Score=104.04 Aligned_cols=269 Identities=10% Similarity=0.018 Sum_probs=169.2
Q ss_pred CCHHHHHHHHHHhHhcCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhh
Q 040279 54 INLNEARYFFGYMTHMQPSPP----ISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCV 129 (626)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~ 129 (626)
|++++|+..+++.+...|..+ ..++..++..+...|++++|+..|+++.+.. +........+.++..++..+..
T Consensus 26 g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~ 103 (366)
T d1hz4a_ 26 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA--RQHDVWHYALWSLIQQSEILFA 103 (366)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHHHHHHH
Confidence 599999999999988766533 3467778889999999999999999887531 1111222223333345677888
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 130 ENRIKEATWLFKNMIAF----GVRPD---VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 130 ~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
.|++..+...+.+.... +.... ...+..+...+...|+++.+...++.........+ .......+......
T Consensus 104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--PQQQLQCLAMLIQC 181 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--GGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh--hhhHHHHHHHHHHH
Confidence 89999999988876542 11111 23455677788889999999999888876432111 22334555666677
Q ss_pred HHhcCCcchHHHHHHHHhhC----CCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHH
Q 040279 203 LCKEGLVDKAKELFLEMKGR----GINP--AVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPN---LLTFNVMIDCL 273 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 273 (626)
+...++...+...+.+.... +..+ ....+..+...+...|++++|...++.........+ ...+..+...+
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 77788888888777765432 1000 112344555666777788888777777654432222 22344566677
Q ss_pred HhcCCHHHHHHHHHHHHhc----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040279 274 CKGGKINEANGLLELMIQR----GLNPD-RFTYNSLMDGYCLVGRIDTAREIFLSMHS 326 (626)
Q Consensus 274 ~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 326 (626)
...|++++|...++..... +..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777766532 22222 23445555666666666666666665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.1e-09 Score=99.71 Aligned_cols=209 Identities=10% Similarity=-0.010 Sum_probs=163.7
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTG-NLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDS 202 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (626)
+..+.+.+.+++|+.+++++++.. |-+..+|+....++...| ++++|+..++++++.+ |.+..+|..+...
T Consensus 50 ~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-------p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 50 RAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-------HhhhhHHHHHhHH
Confidence 456778899999999999999985 446778999999988877 5899999999999876 7789999999999
Q ss_pred HHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----
Q 040279 203 LCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGK---- 278 (626)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 278 (626)
+.+.|++++|++.++++.+.. +.+...|..+...+...|++++|++.++++++.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 999999999999999999874 446889999999999999999999999999997554 67788877777666555
Q ss_pred --HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHH
Q 040279 279 --INEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKH-TVVSYNILINGYC 344 (626)
Q Consensus 279 --~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 344 (626)
+++|...+....+.. +.+...|..+...+. ....+++.+.++...+....+ +...+..++..|.
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 578888888888764 336666666655544 344677778887776653322 3334445555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=7.8e-10 Score=102.73 Aligned_cols=228 Identities=12% Similarity=0.044 Sum_probs=156.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040279 334 VSYNILINGYCKILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAG-QAGYAQKLFDEMKLYNVEPDLSTYNILIDG 412 (626)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (626)
..++.+...+.+.+.+++|+.+++++++.+ +-+...|+.....+...| ++++|...++...+.. +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 345555566667777888888888887763 335566777777777665 4788888888876653 4456677777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC----
Q 040279 413 LCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK---- 488 (626)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---- 488 (626)
+.+.|++++|+..++.+.+.. +.+...|..+...+...|++++|+..++++++.+ +-+...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 888888888888888877665 5567788888888888888888888888888753 2256677777766666554
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC---CHHHHHHHHHHHHcc--CCH
Q 040279 489 --LEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP---DDTTFSIVVDLLAKD--EKY 561 (626)
Q Consensus 489 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~--g~~ 561 (626)
+++|++.+.++++.. +.+...|..+...+.. ...+++.+.++...+ +.| +...+..++.+|... +..
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~----l~~~~~~~~~~~~l~~~y~~~~~~~~ 273 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD----LQPSHSSPYLIAFLVDIYEDMLENQC 273 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH----HTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH----hCCCcCCHHHHHHHHHHHHHHHhcCH
Confidence 578888888888764 4467777777666544 445777787877766 344 345566666666432 444
Q ss_pred hHHHHHHHHH
Q 040279 562 HECSAVSKSS 571 (626)
Q Consensus 562 ~~A~~~~~~~ 571 (626)
+.+...++++
T Consensus 274 ~~~~~~~~ka 283 (315)
T d2h6fa1 274 DNKEDILNKA 283 (315)
T ss_dssp SSHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445444444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=3.9e-09 Score=97.87 Aligned_cols=188 Identities=9% Similarity=0.004 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040279 382 GQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELF 461 (626)
Q Consensus 382 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 461 (626)
+..++|..+|++..+...+.+...+...+......|+.+.|..+|+.+..........+|...+..+.+.|+++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888898888754455666777788888889999999999999887653344557888899999999999999999
Q ss_pred HhcccCCCCCCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 040279 462 HKLPQKGLVPTVVTYSIMIHG-LCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERN 540 (626)
Q Consensus 462 ~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 540 (626)
+++.+.+ +.+...|...+.. +...|+.+.|..+|+.+.+. .+.+...|..++..+...|+.++|+.+|+++++ ..+
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~-~~~ 234 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT-SGS 234 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-SSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCC
Confidence 9988763 2344555544443 34468999999999999986 356678899999999999999999999999987 233
Q ss_pred CCCC--HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 541 LVPD--DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 541 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
..|+ ...|...+..-...|+.+.+.++++++.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4443 4578888887788899999999999885
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=2e-10 Score=108.36 Aligned_cols=214 Identities=7% Similarity=-0.107 Sum_probs=153.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHH
Q 040279 346 ILNVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAG--QAGYAQKLFDEMKLYNVEPDLSTYN-ILIDGLCKNNCVQEA 422 (626)
Q Consensus 346 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A 422 (626)
.+++++|+..++.+.+.. +.+...|..+..++...+ ++++|...+..+.+.. +++...+. .....+...+..++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 445778888888887763 335666666666666555 4778888888887653 33445443 344566678888899
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 423 VKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKN 502 (626)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 502 (626)
+..++.+.... +.+...|+.+..++...|++++|...+....+. .|+. ......+...+..+++...+......
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 98888887765 557788888888888888888877666665542 1221 12333455567777888888888776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 503 GCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 503 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
. +++...+..++..+...|+..+|...+.+..+ ..| +...+..++.++...|++++|.+.++++.
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai 303 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEP----ENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 303 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh----hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4 44555666777778888889999999998887 667 45678888889999999999999999885
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=8.8e-09 Score=95.44 Aligned_cols=219 Identities=9% Similarity=0.015 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc--------------CCcchHHHHHHHHhhCCCCCCcchHHHH
Q 040279 169 SVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE--------------GLVDKAKELFLEMKGRGINPAVVVCTTL 234 (626)
Q Consensus 169 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (626)
+.+..+|++++... +.++..|...+..+... +..++|.++|++..+...+.+...|...
T Consensus 33 ~Rv~~vyerAl~~~-------~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~y 105 (308)
T d2onda1 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44556677776643 44556665555443222 2346667777777654334445566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHH-HHhcCC
Q 040279 235 IHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDG-YCLVGR 313 (626)
Q Consensus 235 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~ 313 (626)
+......|+++.|..+|+++++..+......|...+..+.+.|+++.|.++|+.+.+.+.. +...|...... +...|+
T Consensus 106 a~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~ 184 (308)
T d2onda1 106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCC
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccC
Confidence 7777777777777777777776543333345667777777777777777777777665322 33333333222 233466
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC--hhhHHHHHHHHHHcCCHHHHHHH
Q 040279 314 IDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISNGV-RQT--VITYNTLLSGLFQAGQAGYAQKL 390 (626)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~ 390 (626)
.+.|..+|+.+.... +.+...|...+..+...|+.+.|..+|++...... .|+ ...|...+..-...|+.+.+.++
T Consensus 185 ~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~ 263 (308)
T d2onda1 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 677777777766652 23456666666666667777777777777665421 221 23455555555566666666666
Q ss_pred HHHHHh
Q 040279 391 FDEMKL 396 (626)
Q Consensus 391 ~~~~~~ 396 (626)
++++.+
T Consensus 264 ~~r~~~ 269 (308)
T d2onda1 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=2.1e-10 Score=108.20 Aligned_cols=256 Identities=7% Similarity=0.001 Sum_probs=159.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhH----HHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 040279 89 RHYDAVISFYRKLVSIGLLPDFLTL----NILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCR 164 (626)
Q Consensus 89 g~~~~A~~~~~~~~~~g~~p~~~~~----~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 164 (626)
+..++|+.+++++++. .|+..+. ..++......+..+...|++++|+..++.+++.. +.+...|..+..++..
T Consensus 43 ~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 3346666666666654 4554322 1122222223344555677888999999988764 4467777777777776
Q ss_pred cC--ChHHHHHHHHHHHhCCCCCCccccccHHHHH-HHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhc
Q 040279 165 TG--NLSVALRLHKKMVSGDYENGLISKTNIFSYS-IIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCA 241 (626)
Q Consensus 165 ~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (626)
.+ ++++|+..++++...+ +.+...+. .....+...+.+++|++.++.+.+.. +-+...|+.+..++...
T Consensus 120 ~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~ 191 (334)
T d1dcea1 120 LPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 191 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHhhC-------chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 65 4788999999988876 45555554 44466777888888998888888764 33667788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 040279 242 GNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIF 321 (626)
Q Consensus 242 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 321 (626)
|++++|...++...... |+ .......+...+..+++...+....... +++...+..+...+...++.++|...+
T Consensus 192 ~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 192 HPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp SCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 88777655544433320 11 1122233444555566666666665543 233444555556666667777777777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 322 LSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
.+.....+ .+...+..+..++...|++++|++.++++.+.
T Consensus 266 ~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 266 QELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 76665531 14455666666777777777777777777764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=1.3e-09 Score=98.63 Aligned_cols=220 Identities=10% Similarity=-0.013 Sum_probs=139.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc
Q 040279 130 ENRIKEATWLFKNMIAFGVRP---DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE 206 (626)
Q Consensus 130 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (626)
..+.+.++.-+++.+...... ...++..++.+|.+.|++++|+..|++.++.+ |.++.+|..+..++.+.
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~ 84 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQA 84 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-------CCCHHHHhhhchHHHHH
Confidence 344566777777776542111 23467778899999999999999999999876 67888999999999999
Q ss_pred CCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 040279 207 GLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLL 286 (626)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 286 (626)
|++++|++.|+++.+.. +-+..++..+..+|...|++++|.+.|+..++..+. +......+...+.+.+..+....+.
T Consensus 85 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (259)
T d1xnfa_ 85 GNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLK 162 (259)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999998864 335667888889999999999999999999886433 4444444444445555555555555
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCC----hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040279 287 ELMIQRGLNPDRFTYNSLMDGYCLVGR----IDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNVEEAMSLYRQIISN 362 (626)
Q Consensus 287 ~~~~~~~~~~~~~~~~~ll~~~~~~g~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 362 (626)
....... ++...+. ++..+..... .+.+...+....... +....+|..+...+...|++++|+..|++.+..
T Consensus 163 ~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 163 QHFEKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhhccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 5555432 2222221 2222221111 111111111111110 012234555666777777777777777777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.8e-09 Score=97.57 Aligned_cols=197 Identities=13% Similarity=-0.035 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 040279 370 TYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLC 449 (626)
Q Consensus 370 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (626)
++..+...|.+.|++++|...|++.++.. +-+..+|..+..++.+.|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 44455566666666677666666666542 3345566666666777777777777776666544 334556666666677
Q ss_pred HcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040279 450 KAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVE 529 (626)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 529 (626)
..|++++|...|++..+.. +.+......+...+.+.+..+.+..+........ ++...+. ++..+...........
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 7777777777777666542 1233333334444444454444444444444422 2221111 1122211111111111
Q ss_pred HHHHhhcCCCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 530 LLHKMAEPERNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 530 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
.............|+ ..++..++..|...|++++|.+.|+++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111111100002232 2455667777777777777777777775
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=3.2e-07 Score=77.56 Aligned_cols=123 Identities=10% Similarity=-0.041 Sum_probs=100.1
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040279 445 IDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT 524 (626)
Q Consensus 445 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 524 (626)
...+...|++++|++.|+++. +|+..+|..++.+|...|++++|++.|++.++.+ +.+...|..++.+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 445678899999999998764 4678888899999999999999999999999864 55677889999999999999
Q ss_pred HHHHHHHHHhhcCCCC------------CCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 525 SKVVELLHKMAEPERN------------LVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 525 ~~a~~~~~~~~~~~~~------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
++|++.|++++....+ ..++ ..++..++.++.+.|++++|.+.++.+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998751110 1111 3667788999999999999999999986
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=3.3e-07 Score=77.47 Aligned_cols=126 Identities=12% Similarity=-0.002 Sum_probs=99.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
..+...|+++.|++.|+++. +|+..+|..++.++...|++++|++.|++.++.+ |.+...|..+..++.
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-------p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-------hhhhhhHHHHHHHHH
Confidence 45677899999999998753 5678889999999999999999999999999987 677889999999999
Q ss_pred hcCCcchHHHHHHHHhhCCCC------------CC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040279 205 KEGLVDKAKELFLEMKGRGIN------------PA---VVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRP 261 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~------------~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 261 (626)
+.|++++|++.|++....... .. ..++..+..++.+.|++++|.+.+....+..+.+
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999988653110 00 1344556677778888888888888777654443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=2.9e-07 Score=70.52 Aligned_cols=104 Identities=11% Similarity=-0.010 Sum_probs=77.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040279 444 LIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNK 523 (626)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 523 (626)
-...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+.+..+.+ +.+...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 4566777888888888888887752 3357778888888888888888888888888764 5567788888888888888
Q ss_pred HHHHHHHHHHhhcCCCCCCCC-HHHHHHHHH
Q 040279 524 TSKVVELLHKMAEPERNLVPD-DTTFSIVVD 553 (626)
Q Consensus 524 ~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~ 553 (626)
+++|+..|+++++ +.|+ ...+..+..
T Consensus 87 ~~~A~~~~~~a~~----~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 87 FEEAKRTYEEGLK----HEANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHHHT----TCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCCCCHHHHHHHHH
Confidence 8888888888887 6774 444444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=6.7e-07 Score=81.52 Aligned_cols=209 Identities=8% Similarity=-0.074 Sum_probs=130.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCC-----CC
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGL-LPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVR-----PD 151 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~ 151 (626)
|...+..|...|+|++|...|+++..... ..+. ......+..++..|.+.|++++|+..+++....... ..
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~---~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 55557788999999999999998875311 1111 222334445678899999999999999987653111 11
Q ss_pred HhHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCc--
Q 040279 152 VITYGTLINGFCR-TGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAV-- 228 (626)
Q Consensus 152 ~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-- 228 (626)
..++..+...+.. .|++++|++.++++.......+. .+....++..+...+...|++++|++.|+++.........
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~-~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~ 195 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh
Confidence 3456666767754 69999999999987643100000 1122445777888899999999999999988765322111
Q ss_pred ----chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---hhhHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 040279 229 ----VVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPR-PN---LLTFNVMIDCLCK--GGKINEANGLLELMI 290 (626)
Q Consensus 229 ----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~~~~~~a~~~~~~~~ 290 (626)
..+...+..+...|+++.|...+++..+..+. ++ ......++.++.. .+.+++|+..|+.+.
T Consensus 196 ~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 12344555667788888888888888765322 11 1233445555443 234666666665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=5e-07 Score=82.40 Aligned_cols=209 Identities=10% Similarity=-0.086 Sum_probs=137.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhHhcC----CC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040279 44 FLHENCKSGIINLNEARYFFGYMTHMQ----PS-PPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILIN 118 (626)
Q Consensus 44 ~l~~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 118 (626)
....+-.. +++++|...|.++.... .. .-..+|..++.+|.+.|++++|+..+++.... .++.........
T Consensus 43 aa~~y~~~--~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 118 (290)
T d1qqea_ 43 AATIYRLR--KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHT--TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHH
T ss_pred HHHHHHHC--cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH--hhhcccchhHHH
Confidence 33444444 49999999999987632 11 12357899999999999999999999987754 222223333344
Q ss_pred hhhhhhhhhhh-cCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccccc
Q 040279 119 CFGNKERGLCV-ENRIKEATWLFKNMIAF----GVRP-DVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTN 192 (626)
Q Consensus 119 ~~~~l~~~~~~-~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 192 (626)
++..++..+.. .|++++|+..|++.... +.++ -..++..++..+...|++++|++.|+++.......+.....-
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 44455666644 59999999999987653 1111 134578889999999999999999999987653221111111
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCC-CC---cchHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 040279 193 IFSYSIIIDSLCKEGLVDKAKELFLEMKGRGIN-PA---VVVCTTLIHGFCC--AGNWEEVNGLFIEMLD 256 (626)
Q Consensus 193 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~li~~~~~--~~~~~~a~~~~~~~~~ 256 (626)
...+...+..+...|+++.|...+++..+.... ++ ......++.++.. .+.+++|+..|+++.+
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 233455666778899999999999998876311 11 1234556666554 2457777777765543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=2.2e-07 Score=71.24 Aligned_cols=90 Identities=14% Similarity=0.074 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLA 556 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 556 (626)
.-+..+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++ +.| +...|..++.++.
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD----LKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHH----hccchhhHHHHHHHHHH
Confidence 45677899999999999999999875 66788899999999999999999999999998 677 6788999999999
Q ss_pred ccCCHhHHHHHHHHHH
Q 040279 557 KDEKYHECSAVSKSSY 572 (626)
Q Consensus 557 ~~g~~~~A~~~~~~~~ 572 (626)
..|++++|+..++++.
T Consensus 83 ~~~~~~~A~~~~~~a~ 98 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGL 98 (117)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 9999999999999996
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.63 E-value=2.7e-07 Score=79.12 Aligned_cols=95 Identities=12% Similarity=0.008 Sum_probs=45.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSI 550 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~ 550 (626)
+...+...+..+.+.|++++|+..|+++++.. +.+...|..++.+|.+.|++++|+..++++++ +.| +...|..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~----l~p~~~~a~~~ 77 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQSVKAHFF 77 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH----hCCCcHHHHHH
Confidence 33444444444555555555555555444432 33344444445555555555555555555544 444 2344444
Q ss_pred HHHHHHccCCHhHHHHHHHHH
Q 040279 551 VVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 551 l~~~~~~~g~~~~A~~~~~~~ 571 (626)
++.+|.+.|++++|...|+++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=6e-07 Score=73.32 Aligned_cols=121 Identities=9% Similarity=0.031 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN 522 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (626)
.....|.+.|++++|+..|+++++.. +.+...|..++.+|...|++++|.+.|+++++.+ +.+..+|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 34567889999999999999998863 3368889999999999999999999999999864 556678999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHH--HHccCCHhHHHHHHH
Q 040279 523 KTSKVVELLHKMAEPERNLVPD-DTTFSIVVDL--LAKDEKYHECSAVSK 569 (626)
Q Consensus 523 ~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 569 (626)
++++|...++++.. +.|+ ...+..+..+ ....+.+++|....+
T Consensus 93 ~~~eA~~~~~~a~~----~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 138 (159)
T d1a17a_ 93 KFRAALRDYETVVK----VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 138 (159)
T ss_dssp CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 99999999999998 6774 4555454444 334455666655433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.54 E-value=0.0002 Score=63.52 Aligned_cols=109 Identities=10% Similarity=-0.073 Sum_probs=64.4
Q ss_pred CHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 040279 453 RLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR----KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ----NNKT 524 (626)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 524 (626)
....+...+...... .+...+..+...|.. ..+...+...++...+.| +......+...|.. ..++
T Consensus 125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence 345555555554442 345555555555554 345566666666666643 55555556555554 4567
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHH
Q 040279 525 SKVVELLHKMAEPERNLVPDDTTFSIVVDLLAK----DEKYHECSAVSKSSY 572 (626)
Q Consensus 525 ~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 572 (626)
++|..+|++..+ .| ++..+..|+..|.+ ..++++|.++|+++-
T Consensus 199 ~~A~~~~~~aa~--~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa 245 (265)
T d1ouva_ 199 KEALARYSKACE--LE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 245 (265)
T ss_dssp HHHHHHHHHHHH--TT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred hhhhhhHhhhhc--cc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 777777777776 22 45566666666664 336777777777764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.54 E-value=9.4e-05 Score=65.80 Aligned_cols=110 Identities=11% Similarity=-0.112 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh----cCCH
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCK----AGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR----KGKL 489 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 489 (626)
....+...+......+ +...+..+...+.. ..+...+..+++...+.| +......+...|.. .+++
T Consensus 125 ~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 125 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred hhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence 3444555554444322 34444445555543 344555666666655542 45555555555554 4567
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhc
Q 040279 490 EKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAE 536 (626)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 536 (626)
++|+..|++..+.| +...+..|...|.+ ..+.++|.++|+++.+
T Consensus 199 ~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~ 246 (265)
T d1ouva_ 199 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 246 (265)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred hhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 77777777777765 45556666666654 3366777777777766
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.52 E-value=4e-07 Score=69.06 Aligned_cols=92 Identities=11% Similarity=0.001 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHH
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDL 554 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 554 (626)
+..++..+.+.|++++|+..|++.++.+ +-+..+|..++.++.+.|++++|+..++++++ +.| +...+..++.+
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~a~~~la~~ 93 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDPKDIAVHAALAVS 93 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccc----cccccccchHHHHHH
Confidence 3456777888999999999999998864 44678889999999999999999999999988 778 47888899999
Q ss_pred HHccCCHhHHHHHHHHHH
Q 040279 555 LAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 555 ~~~~g~~~~A~~~~~~~~ 572 (626)
|...|++++|.+.+++.+
T Consensus 94 y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 94 HTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 999999999999998863
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=8.2e-07 Score=72.50 Aligned_cols=92 Identities=9% Similarity=-0.003 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHH
Q 040279 476 YSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVVDL 554 (626)
Q Consensus 476 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 554 (626)
+...+..|.+.|++++|+..|+++++.+ +.+...|..++.+|...|++++|...|+++++ +.| +...|..++.+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~----~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHH----HcccchHHHHHHHHH
Confidence 3445677899999999999999999975 55788999999999999999999999999999 778 46899999999
Q ss_pred HHccCCHhHHHHHHHHHH
Q 040279 555 LAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 555 ~~~~g~~~~A~~~~~~~~ 572 (626)
+...|++++|.+.++++.
T Consensus 88 ~~~~g~~~eA~~~~~~a~ 105 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVV 105 (159)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999999996
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=2.6e-07 Score=79.21 Aligned_cols=98 Identities=9% Similarity=-0.082 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCC-CHhHHHHH
Q 040279 401 PDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVP-TVVTYSIM 479 (626)
Q Consensus 401 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 479 (626)
|+...+......+.+.|++++|+..|+...... |.+...|..+..+|.+.|++++|+..|+++++. .| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 566666677777778888888888887776654 556777777777888888888888888887764 33 46677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 040279 480 IHGLCRKGKLEKANDFLLYMEK 501 (626)
Q Consensus 480 ~~~~~~~g~~~~A~~~~~~~~~ 501 (626)
+.+|...|++++|+..|+++.+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7888888888888888877765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.2e-06 Score=67.11 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhhcCCCCCCCCH---HHHHHH
Q 040279 478 IMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKT---SKVVELLHKMAEPERNLVPDD---TTFSIV 551 (626)
Q Consensus 478 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~p~~---~~~~~l 551 (626)
.++..+...+++++|.+.|++..+.+ +.+..++..+..++.+.++. ++|+.++++++. ..|++ .++..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~----~~~~~~~~~~~~~L 78 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP----KGSKEEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT----TSCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh----ccCCchHHHHHHHH
Confidence 34555556666666666666666653 44555666666666554333 346666666655 33322 245566
Q ss_pred HHHHHccCCHhHHHHHHHHHH
Q 040279 552 VDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 552 ~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+.+|.+.|++++|.+.|++++
T Consensus 79 g~~y~~~g~~~~A~~~~~~aL 99 (122)
T d1nzna_ 79 AVGNYRLKEYEKALKYVRGLL 99 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 666666666666666666665
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=4.7e-06 Score=68.55 Aligned_cols=86 Identities=8% Similarity=-0.065 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCC-CHHHHHHHH
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVP-DDTTFSIVV 552 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~ 552 (626)
.+|+.+..+|.+.|++++|+..+++.++.+ +.+..++..++.+|...|++++|+..|+++++ +.| +......+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~----l~P~n~~~~~~l~ 137 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ----LYPNNKAAKTQLA 137 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH----hCCCCHHHHHHHH
Confidence 356778889999999999999999999874 55788999999999999999999999999998 788 456666666
Q ss_pred HHHHccCCHhHH
Q 040279 553 DLLAKDEKYHEC 564 (626)
Q Consensus 553 ~~~~~~g~~~~A 564 (626)
.+..+.+...+.
T Consensus 138 ~~~~~~~~~~~~ 149 (170)
T d1p5qa1 138 VCQQRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 665555444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.31 E-value=1.4e-06 Score=65.88 Aligned_cols=88 Identities=11% Similarity=-0.031 Sum_probs=76.6
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
..+.+.|++++|+..|++.+... +-+..+|..++.++.+.|++++|+..|+++++.+ |.+..++..+...|.
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-------cccccchHHHHHHHH
Confidence 46778999999999999998874 4468889999999999999999999999999876 677888999999999
Q ss_pred hcCCcchHHHHHHHHh
Q 040279 205 KEGLVDKAKELFLEMK 220 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~ 220 (626)
..|++++|++.+++..
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 9999999999988753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=1.4e-06 Score=66.73 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 040279 442 NCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGK---LEKANDFLLYMEKNGCAPN-VVTFNTLMHG 517 (626)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 517 (626)
..++..+...+++++|.+.|++....+ +.+..++..++.++.+.++ +++|+++++++.+.+..|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666667777777777777777643 3356677777777765443 4457777777766432222 1356667777
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCCH
Q 040279 518 FLQNNKTSKVVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 518 ~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 545 (626)
|.+.|++++|++.|+++++ +.|+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~----~~P~~ 105 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ----TEPQN 105 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HCTTC
T ss_pred HHHHhhhHHHHHHHHHHHH----hCcCC
Confidence 7777777777777777777 66753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.5e-05 Score=65.41 Aligned_cols=123 Identities=9% Similarity=-0.056 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCC
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPD-------FLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGV 148 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (626)
..+...+..+.+.|++++|+..|++.+..-.... .......+..+..++.+|.+.|++++|+..++..+...
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 3445556667777777777777777664311000 00111222334456678889999999999999999875
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc
Q 040279 149 RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE 206 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (626)
|.+..++..++.++...|++++|+..|+++++.+ |.+..+...+..+..+.
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-------P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHH
Confidence 4478889999999999999999999999998876 45666665555544333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=4.2e-06 Score=65.05 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC--------HH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD--------DT 546 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~--------~~ 546 (626)
.+..++..+...|++++|++.|.+.++.+ +.+..++..+..+|.+.|++++|++.++++++ +.|+ ..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----l~~~~~~~~~~~a~ 80 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE----VGRENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH----hCcccHHHHHHHHH
Confidence 34567778888899999999999888864 55677888888899999999999999998876 4442 24
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHH
Q 040279 547 TFSIVVDLLAKDEKYHECSAVSKSSY 572 (626)
Q Consensus 547 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 572 (626)
+|..++..+...+++++|.+.+++..
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 67778888889999999999998875
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=4.4e-07 Score=89.63 Aligned_cols=228 Identities=8% Similarity=-0.086 Sum_probs=128.1
Q ss_pred HHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHH
Q 040279 58 EARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEAT 137 (626)
Q Consensus 58 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~ 137 (626)
+|.+.|++++...|. ...++..++.++..+|++++| |++++.. .|+......+.. ..-...+..+.
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~--------~Lw~~~y~~~i 69 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQ--------DLWNHAFKNQI 69 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHH--------HHHHHHTHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHH--------HHHHHHHHHHH
Confidence 678888888776544 455677788888888888876 7777654 332211111110 00011245677
Q ss_pred HHHHHHHHCCCCCCHhHHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHH
Q 040279 138 WLFKNMIAFGVRPDVITYGTLI--NGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKEL 215 (626)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 215 (626)
+.++...+....++........ ......+.++.|+..++.....+ +++...+..+...+.+.|+.++|...
T Consensus 70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-------~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 70 TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-------LPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp HHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------------
T ss_pred HHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------hhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 7777776654333332222222 22233456666666666555443 45566777888888888999988887
Q ss_pred HHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040279 216 FLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEANGLLELMIQRGLN 295 (626)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 295 (626)
+....... ...++..+...+...|++++|...|++..+..+. +...|+.+...+...|+..+|...|.+.+... +
T Consensus 143 ~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~ 217 (497)
T d1ya0a1 143 QSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-F 217 (497)
T ss_dssp CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-B
T ss_pred HHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-C
Confidence 77665431 2356777888899999999999999999887443 66789999999999999999999999988764 4
Q ss_pred CCHhhHHHHHHHHHhc
Q 040279 296 PDRFTYNSLMDGYCLV 311 (626)
Q Consensus 296 ~~~~~~~~ll~~~~~~ 311 (626)
|-..++..|...+.+.
T Consensus 218 ~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 218 PFPAASTNLQKALSKA 233 (497)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5666777777766543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.13 E-value=1.9e-05 Score=63.47 Aligned_cols=75 Identities=17% Similarity=-0.032 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHH
Q 040279 474 VTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVV 552 (626)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~ 552 (626)
.+|+.++.+|.+.|++++|++.++++++.+ +.+..+|..++.++...|++++|+..|+++++ +.|+ ..+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~----l~P~n~~~~~~l~ 142 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS----LNPNNLDIRNSYE 142 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHH
Confidence 356778888888999999999999988864 55678888889999999999999999999988 7785 44444443
Q ss_pred H
Q 040279 553 D 553 (626)
Q Consensus 553 ~ 553 (626)
.
T Consensus 143 ~ 143 (153)
T d2fbna1 143 L 143 (153)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=8.3e-06 Score=63.29 Aligned_cols=105 Identities=10% Similarity=0.108 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG--CAPN----VVTFNTL 514 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~~l 514 (626)
+..+...+...|++++|+..|++.++.+ +.+...|..+..+|.+.|++++|++.++++++.. .... ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3455667777788888888887777753 2356777777888888888888888887776531 0001 1356666
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040279 515 MHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSI 550 (626)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 550 (626)
...+...+++++|++.|++.+. ..|+......
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~----~~~~~~~~~~ 117 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA----EHRTPDVLKK 117 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH----HCCCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh----cCCCHHHHHH
Confidence 7777778888888888888776 4555554433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=1.4e-05 Score=65.54 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=64.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHH
Q 040279 472 TVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSI 550 (626)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~ 550 (626)
+...|..+..++.+.|++++|+..+.++++.. +.+..+|..++.++...|++++|+..|+++++ +.|+ ......
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~----l~p~n~~~~~~ 150 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE----IAPEDKAIQAE 150 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHH
Confidence 35567778888999999999999999998864 55677888999999999999999999999988 7774 455555
Q ss_pred HHHHHHccC
Q 040279 551 VVDLLAKDE 559 (626)
Q Consensus 551 l~~~~~~~g 559 (626)
+..+..+..
T Consensus 151 l~~~~~~l~ 159 (169)
T d1ihga1 151 LLKVKQKIK 159 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.10 E-value=8.1e-05 Score=60.73 Aligned_cols=93 Identities=10% Similarity=-0.029 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHH
Q 040279 475 TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-DTTFSIVVD 553 (626)
Q Consensus 475 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~ 553 (626)
+|+.+..+|.+.|++++|+..+++.++.+ +.+..+|..++.++...|++++|...|+++++ +.|+ ..+...+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~----l~P~n~~~~~~l~~ 140 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE----VNPQNKAARLQIFM 140 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHH
Confidence 46678888999999999999999999874 66788999999999999999999999999998 7784 555666666
Q ss_pred HHHccCCHh-HHHHHHHHHH
Q 040279 554 LLAKDEKYH-ECSAVSKSSY 572 (626)
Q Consensus 554 ~~~~~g~~~-~A~~~~~~~~ 572 (626)
+..+.++.. ...+.+..|.
T Consensus 141 ~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 141 CQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 655554443 3445555553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.0034 Score=56.58 Aligned_cols=126 Identities=18% Similarity=0.167 Sum_probs=81.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 125 RGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
..+.+.|.++.|..+|..+. -|..++..+.+.++++.|.+.+.+. .+..+|..+...+.
T Consensus 22 ~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 22 DRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------------NSTRTWKEVCFACV 80 (336)
T ss_dssp -------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------------TCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------------CCHHHHHHHHHHHH
Confidence 44557888888888887653 2567778888888888888887764 23667777777777
Q ss_pred hcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 040279 205 KEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGG 277 (626)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (626)
+.....-+ .+.......+......++..|-..|.+++...+++..... ...+...++.++..|++.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 76554332 2222222335555567788888888888888888877643 2346667777888777754
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.0035 Score=56.49 Aligned_cols=177 Identities=14% Similarity=0.054 Sum_probs=108.7
Q ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 040279 190 KTNIFSYSIIIDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVM 269 (626)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 269 (626)
.+|..-...+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+.+.+.. +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 3455555667788889999999999998654 46778888899999999988887551 56688888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 040279 270 IDCLCKGGKINEANGLLELMIQRGLNPDRFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTVVSYNILINGYCKILNV 349 (626)
Q Consensus 270 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (626)
...+........+ .+.......++.....++..|-..|.++....+++...... ..+...++.++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence 8888887766543 22333344566666788899999999999999999876542 346677888999888754 3
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 040279 350 EEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEM 394 (626)
Q Consensus 350 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 394 (626)
++.++.++... +......++..|.+.+-+.++.-++.++
T Consensus 149 ~kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 149 QKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp HHHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence 44444333321 1222334455565555555555544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.06 E-value=9.5e-05 Score=59.14 Aligned_cols=116 Identities=16% Similarity=0.016 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHhh----HHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCC
Q 040279 77 SFNLLFGAVAKNRHYDAVISFYRKLVSIGL----LPDFLT----LNILINCFGNKERGLCVENRIKEATWLFKNMIAFGV 148 (626)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----~p~~~~----~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (626)
.+..-+..+.+.|++.+|+..|.+++..-. .++... ....+..+.+++.+|.+.|++++|+..++++++..
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~- 97 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 97 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-
Confidence 344455566677777777777777664311 111111 11223344567788999999999999999999885
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHH
Q 040279 149 RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIII 200 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (626)
+.+..+|..++.++...|++++|+..|++.++.+ |.+..+...+-
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-------P~n~~~~~~l~ 142 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIRNSYE 142 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Confidence 5578999999999999999999999999999876 45565555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.02 E-value=6.5e-05 Score=61.33 Aligned_cols=123 Identities=12% Similarity=-0.044 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH----hhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCC
Q 040279 76 SSFNLLFGAVAKNRHYDAVISFYRKLVSI---GLLPDF----LTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGV 148 (626)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (626)
..+...+..+.+.|++.+|+..|++.+.. ....+. ..-......+..++.+|.+.|++++|+..++.+++..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~- 94 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 94 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-
Confidence 44666777788888888888888776632 111111 1112223334456678889999999999999998875
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc
Q 040279 149 RPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE 206 (626)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (626)
+.+..+|..+..++...|++++|+..|++++..+ |.+..+...+-....+.
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-------P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQIFMCQKKA 145 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHH
Confidence 5578889999999999999999999999999876 55666655555444333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=5e-06 Score=81.87 Aligned_cols=265 Identities=9% Similarity=-0.096 Sum_probs=144.5
Q ss_pred HHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHH
Q 040279 281 EANGLLELMIQRGLNPD-RFTYNSLMDGYCLVGRIDTAREIFLSMHSKGCKHTV-VSYNILINGYCKILNVEEAMSLYRQ 358 (626)
Q Consensus 281 ~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 358 (626)
+|.+.|++..+. +|+ ...+..+..++...|++++| |+++...+ |+. ...+ +....-...+..+++.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~--~e~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKK--VEQDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHT--HHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHh--HHHHHHHHHHHHHHHHHHH
Confidence 678888888765 333 34455566777777877766 66666542 211 1111 1111112235667777887
Q ss_pred HHHCCCCCChhhHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 040279 359 IISNGVRQTVITYNTLLSG--LFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEF 436 (626)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 436 (626)
..+....++.......... ....+.++.++..+....+.. +++...+..+...+.+.|+.++|...++......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 7765434443332222222 223345555555544443322 3345567777788888999999998887665422
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040279 437 GIEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMH 516 (626)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 516 (626)
....+..+...+...|++++|...|+++.+.. +.+...|+.++..+...|+..+|+..|.+..... +|-..++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 24577788999999999999999999999852 2346799999999999999999999999999875 677888888888
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 517 GFLQNNKTSKVVELLHKMAEPERNLVPD----DTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
.+.+..+..++ .+ ..+. ...+..+...+...+.+++..++.+++
T Consensus 229 ~~~~~~~~~~~-------~~----~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 229 ALSKALESRDE-------VK----TKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHHHTTSCCC-------CC----SSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred HHHHhhhhhhh-------hc----cccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 77654322110 01 1122 123444444555666666666665554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=9.7e-05 Score=60.35 Aligned_cols=117 Identities=11% Similarity=0.005 Sum_probs=79.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCH---hhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCC
Q 040279 80 LLFGAVAKNRHYDAVISFYRKLVSIG-----LLPDF---LTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPD 151 (626)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~---~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (626)
..+..+.+.|++.+|+..|+++++.. ...+. ..-......+..++..+.+.|++++|+..++++++.. +.+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~ 110 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSN 110 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhh
Confidence 34445566666666666666554310 00000 0011122233345678899999999999999999875 557
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHH
Q 040279 152 VITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLC 204 (626)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (626)
..+|..++.++...|++++|+..|+++++.+ |.+..+...+..+..
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-------p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence 8899999999999999999999999999876 556666666555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=0.00017 Score=59.14 Aligned_cols=124 Identities=8% Similarity=-0.004 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 040279 78 FNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNKERGLCVENRIKEATWLFKNMIAFGVRPDVITYGT 157 (626)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 157 (626)
....+......|++++|...|.+.+.. .++...-.. ..+. .+...-..+... ....+..
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l~~~-------------~~~~--w~~~~r~~l~~~----~~~a~~~ 72 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPVLDDL-------------RDFQ--FVEPFATALVED----KVLAHTA 72 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTTGGG-------------TTST--THHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CcccccccC-------------cchH--HHHHHHHHHHHH----HHHHHHH
Confidence 444556777888888888888888764 222211000 0011 111111111111 2346677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhcCCcchHHHHHHHHhh-----CCCCCCcc
Q 040279 158 LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKEGLVDKAKELFLEMKG-----RGINPAVV 229 (626)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 229 (626)
++.++.+.|++++|+..+++++..+ |.+...|..++.++.+.|+.++|++.|+++.. .|+.|...
T Consensus 73 la~~~~~~g~~~~Al~~~~~al~~~-------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 73 KAEAEIACGRASAVIAELEALTFEH-------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 8888888888888888888888876 67788888888888888888888888888743 36666543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.78 E-value=0.00015 Score=59.39 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040279 443 CLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN 522 (626)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 522 (626)
.........|++++|.+.|.+.+..- +.... ......+-+...-..+.. .....+..++.++...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 33455677888888888888877631 11100 000000001111111111 01245677788888888
Q ss_pred CHHHHHHHHHHhhcCCCCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhhccccccccCCc
Q 040279 523 KTSKVVELLHKMAEPERNLVP-DDTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQPSS 585 (626)
Q Consensus 523 ~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~ 585 (626)
++++|+..++++++ +.| +...|..++.+|.+.|++++|.+.|+++.+....-....|..
T Consensus 82 ~~~~Al~~~~~al~----~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 82 RASAVIAELEALTF----EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp CHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CchHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 88888888888888 777 567788888888888999888888888754322222345543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.68 E-value=3.4e-05 Score=67.92 Aligned_cols=123 Identities=14% Similarity=0.070 Sum_probs=79.0
Q ss_pred hhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHhc
Q 040279 127 LCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCKE 206 (626)
Q Consensus 127 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (626)
..++|++++|+..+++.++.. +.|...+..++..++..|++++|.+.++...+.+ |.+...+..+...+...
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-------P~~~~~~~~l~~ll~a~ 77 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-------PEYLPGASQLRHLVKAA 77 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------GGGHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHhc
Confidence 456799999999999998875 5578889999999999999999999999998865 44455555554444333
Q ss_pred CCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040279 207 GLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDL 257 (626)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 257 (626)
+..+++..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 78 ~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 332222111111011111112233334455666778888888888877664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=6.7e-05 Score=59.34 Aligned_cols=110 Identities=6% Similarity=0.005 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040279 452 GRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCR----------KGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQN 521 (626)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 521 (626)
+.+++|+..|+...+.. +.+..++..+..++.. .+.+++|++.|+++++.+ +.+..+|..++.+|...
T Consensus 11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHc
Confidence 34455555555554431 2234444444444432 233466777777777653 44556676676666554
Q ss_pred C-----------CHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 522 N-----------KTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 522 g-----------~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
| .+++|.+.|+++++ +.|+...+..-+..+ .+|.+++.++++
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~----l~P~~~~~~~~L~~~------~ka~~~~~e~~k 141 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD----EQPDNTHYLKSLEMT------AKAPQLHAEAYK 141 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHH------HTHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc----cCCCHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 3 36889999999988 888766655443332 345555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.62 E-value=8.7e-05 Score=58.64 Aligned_cols=75 Identities=7% Similarity=-0.162 Sum_probs=60.9
Q ss_pred hhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCCccccccHHH
Q 040279 126 GLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRT----------GNLSVALRLHKKMVSGDYENGLISKTNIFS 195 (626)
Q Consensus 126 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 195 (626)
.|-+.+.+++|+..|+..++.. |.+..++..+..++... +.+++|+..|+++++.+ |.+..+
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-------P~~~~a 77 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------PKKDEA 77 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-------chhhHH
Confidence 4556677999999999999985 55788888888888754 45688999999999877 778889
Q ss_pred HHHHHHHHHhcCC
Q 040279 196 YSIIIDSLCKEGL 208 (626)
Q Consensus 196 ~~~l~~~~~~~g~ 208 (626)
|..+..+|...|+
T Consensus 78 ~~~lG~~y~~~g~ 90 (145)
T d1zu2a1 78 VWCIGNAYTSFAF 90 (145)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhhHHHHHHHccc
Confidence 9988888876653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.50 E-value=0.00027 Score=56.62 Aligned_cols=99 Identities=11% Similarity=-0.029 Sum_probs=69.5
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC---
Q 040279 475 TYSIM--IHGLCRKGKLEKANDFLLYMEKNGC-APN----------VVTFNTLMHGFLQNNKTSKVVELLHKMAEPE--- 538 (626)
Q Consensus 475 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 538 (626)
+|..+ +..+...|++++|++.|++.++..- .|+ ...|+.+..+|...|++++|...++++++..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4455667888888888888876310 111 3567888889999999999998888876400
Q ss_pred CCCCCC-----HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 040279 539 RNLVPD-----DTTFSIVVDLLAKDEKYHECSAVSKSSYR 573 (626)
Q Consensus 539 ~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 573 (626)
....++ ...+..++.+|...|++++|.+.|+++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222 23567789999999999999999999864
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.49 E-value=0.00026 Score=62.09 Aligned_cols=50 Identities=22% Similarity=0.132 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040279 381 AGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEM 431 (626)
Q Consensus 381 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (626)
.|++++|+..+++..+.. +.+...+..+...++..|++++|...++...+
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555544432 33444444455555555555555555544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.0012 Score=47.34 Aligned_cols=75 Identities=12% Similarity=0.056 Sum_probs=48.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCC-H
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNG-----CAPN-VVTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPD-D 545 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-~ 545 (626)
...+..++..+.+.|++++|+..|++..+.. ..++ ..++..+..++.+.|++++|+..++++++ +.|+ .
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~----l~P~~~ 80 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE----LDPEHQ 80 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH----hCcCCH
Confidence 3344566777777777777777777766431 1122 34677777778888888888888888777 6774 4
Q ss_pred HHHHHH
Q 040279 546 TTFSIV 551 (626)
Q Consensus 546 ~~~~~l 551 (626)
.++..+
T Consensus 81 ~a~~Nl 86 (95)
T d1tjca_ 81 RANGNL 86 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00063 Score=48.81 Aligned_cols=76 Identities=5% Similarity=-0.064 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC---CCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhhcccccccc
Q 040279 507 NVVTFNTLMHGFLQNNKTSKVVELLHKMAEPE---RNLVPD-DTTFSIVVDLLAKDEKYHECSAVSKSSYRACLYVTIFQ 582 (626)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 582 (626)
+...+-.++..+.+.|++++|+..|+++++.. ....++ ..++..++.++.+.|++++|.+.+++++ ..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL-------~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL-------ELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH-------HhC
Confidence 34445678889999999999999999987510 011223 5789999999999999999999999997 456
Q ss_pred CCchhhh
Q 040279 583 PSSLGSM 589 (626)
Q Consensus 583 p~~~~~l 589 (626)
|+.-.++
T Consensus 77 P~~~~a~ 83 (95)
T d1tjca_ 77 PEHQRAN 83 (95)
T ss_dssp TTCHHHH
T ss_pred cCCHHHH
Confidence 7765444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.06 E-value=0.0018 Score=51.51 Aligned_cols=97 Identities=19% Similarity=0.082 Sum_probs=62.0
Q ss_pred HHhhcCCCCHHHHHHHHHHhHhcCCC-CC----------HhhHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHhh
Q 040279 47 ENCKSGIINLNEARYFFGYMTHMQPS-PP----------ISSFNLLFGAVAKNRHYDAVISFYRKLVSIG---LLPDFLT 112 (626)
Q Consensus 47 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~ 112 (626)
.....| ++++|+..|++.+...+. |+ ..+|+.++.++...|++++|+..+++.++.. ...+...
T Consensus 18 ~~~~~g--~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 18 RQLVAG--EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHT--CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHcC--CHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 344445 999999999999875443 21 3578899999999999999999999887420 0111111
Q ss_pred HHHHHHhhhhhhhhhhhcCCHHHHHHHHHHHHH
Q 040279 113 LNILINCFGNKERGLCVENRIKEATWLFKNMIA 145 (626)
Q Consensus 113 ~~~ll~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 145 (626)
......++..++..|...|++++|+..|++.++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222333445566666666666666666543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.54 E-value=0.026 Score=42.93 Aligned_cols=78 Identities=9% Similarity=-0.073 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHc----c
Q 040279 487 GKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQ----NNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAK----D 558 (626)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 558 (626)
.+.++|.+++++..+.| +......|...|.. ..+.++|.++|++..+ . -++.....|+..|.. .
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~--~---g~~~a~~~Lg~~y~~G~gv~ 108 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG--L---NDQDGCLILGYKQYAGKGVV 108 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHTSSSC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhc--c---CcchHHHHHHHHHHcCCccC
Confidence 45556666666665544 34444444444443 3345666666666655 2 234444455555543 3
Q ss_pred CCHhHHHHHHHHHH
Q 040279 559 EKYHECSAVSKSSY 572 (626)
Q Consensus 559 g~~~~A~~~~~~~~ 572 (626)
.+.++|.++++++-
T Consensus 109 ~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 109 KNEKQAVKTFEKAC 122 (133)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 45666666666653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.43 Score=44.87 Aligned_cols=52 Identities=4% Similarity=0.014 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 040279 515 MHGFLQNNKTSKVVELLHKMAEPERNLVPDDTTFSIVVDLLAKDEKYHECSAVSKSS 571 (626)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 571 (626)
+..+...|....|...+..+.. ..+......++....+.|.++.|+....++
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~-----~~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVK-----SKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 4566788999999988888876 234556667778888899999998777665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.48 Score=44.52 Aligned_cols=414 Identities=12% Similarity=-0.007 Sum_probs=221.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHhhhhh
Q 040279 46 HENCKSGIINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAK--NRHYDAVISFYRKLVSIGLLPDFLTLNILINCFGNK 123 (626)
Q Consensus 46 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~l 123 (626)
....+.+ +...+.++...+. . .| ...|-..-....+ .....+... .+.+ .|+......+-..+
T Consensus 14 ~~a~~~~--~~~~~~~~~~~L~-d--yp-L~pYl~~~~l~~~~~~~~~~~i~~---Fl~~---~p~~P~~~~lr~~~--- 78 (450)
T d1qsaa1 14 KQAWDNR--QMDVVEQMMPGLK-D--YP-LYPYLEYRQITDDLMNQPAVTVTN---FVRA---NPTLPPARTLQSRF--- 78 (450)
T ss_dssp HHHHHTT--CHHHHHHHSGGGT-T--ST-THHHHHHHHHHHTGGGCCHHHHHH---HHHH---CTTCHHHHHHHHHH---
T ss_pred HHHHHCC--CHHHHHHHHhhhc-C--CC-CHHHHHHHHHHhccccCCHHHHHH---HHHH---CCCChhHHHHHHHH---
Confidence 3344444 7777777766652 1 12 3333333222222 223333222 2222 35544444332221
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHH
Q 040279 124 ERGLCVENRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSL 203 (626)
Q Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (626)
...+.+.++++..+..+. ..+.+...-.....+....|+.+.|...+..+-..+ ..
T Consensus 79 l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-------~~------------ 134 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-------KS------------ 134 (450)
T ss_dssp HHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-------SC------------
T ss_pred HHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CC------------
Confidence 234455666655443331 123445555566777777888887777777665544 11
Q ss_pred HhcCCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 040279 204 CKEGLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCCAGNWEEVNGLFIEMLDLGPRPNLLTFNVMIDCLCKGGKINEAN 283 (626)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 283 (626)
..+.+..+|..+.+.| ..+...+-.-+......|++..|..+...+. ..........+........ +.
T Consensus 135 ----~p~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~----~~~~~~~~a~~~l~~~p~~---~~ 202 (450)
T d1qsaa1 135 ----QPNACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANNPNT---VL 202 (450)
T ss_dssp ----CCTHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHCGGG---HH
T ss_pred ----CchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCC----hhHHHHHHHHHHHHhChHh---HH
Confidence 1233334444444443 2344444445555666778777777665431 1122233334433322222 22
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH----HhcCChHHHHHHHH
Q 040279 284 GLLELMIQRGLNPDRFTYNSLMDGYCL--VGRIDTAREIFLSMHSKGCKHTVVSYNILINGY----CKILNVEEAMSLYR 357 (626)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~ 357 (626)
.. .... ..+......+..++.+ ..+.+.+...+......... +...+..+-... ...+..+.+...+.
T Consensus 203 ~~---~~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~ 276 (450)
T d1qsaa1 203 TF---ARTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRD 276 (450)
T ss_dssp HH---HHHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred HH---HhcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 21 1111 2233333333333333 35788888888887765322 333333332222 23566788888887
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 040279 358 QIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFG 437 (626)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 437 (626)
.....+ .+.......+......+++..+...+..+.... .....-.--+..++...|+.+.|...|..+... ++
T Consensus 277 ~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~ 350 (450)
T d1qsaa1 277 DAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG 350 (450)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS
T ss_pred hhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC
Confidence 777653 344444445556677789999999888875432 223344455677888999999999999988742 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCC--CCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040279 438 IEIFNCLIDGLCKAGRLDNAWELFHKLPQKGLV--PTVV----TYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTF 511 (626)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 511 (626)
.|..+.. .+.|..- .+....++ +... .-...+..+...|....|...|..+... .+....
T Consensus 351 --fYG~LAa--~~Lg~~~-------~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~ 416 (450)
T d1qsaa1 351 --FYPMVAA--QRIGEEY-------ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQ 416 (450)
T ss_dssp --HHHHHHH--HHTTCCC-------CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHH
T ss_pred --hHHHHHH--HHcCCCC-------CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHH
Confidence 3443322 2233210 00000001 1110 0113356677889999999999988764 356667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 512 NTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 512 ~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
..+.....+.|.++.|+....++..
T Consensus 417 ~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 417 AQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCChhHHHHHHHHHHc
Confidence 7788888899999999998888754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.25 E-value=0.055 Score=41.03 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccccHHHHHHHHHHHHh----c
Q 040279 131 NRIKEATWLFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSYSIIIDSLCK----E 206 (626)
Q Consensus 131 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 206 (626)
.|+++|+.+|++..+.| +......|.. ....+.++|++.+++..+.+ ++.....|...|.. .
T Consensus 7 kd~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---------~~~a~~~Lg~~y~~g~~~~ 72 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---------SGNGCRFLGDFYENGKYVK 72 (133)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---------chhhhhhHHHhhhhccccc
Confidence 46778888888877765 2233333322 23456677777777766554 23344444444443 2
Q ss_pred CCcchHHHHHHHHhhCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 040279 207 GLVDKAKELFLEMKGRGINPAVVVCTTLIHGFCC----AGNWEEVNGLFIEMLDLG 258 (626)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~ 258 (626)
.+.++|.++|++..+.| ++.....|...|.. ..+.++|.++|+...+.|
T Consensus 73 ~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 34556666666665554 33344444444443 234555555555555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.04 E-value=0.38 Score=34.69 Aligned_cols=62 Identities=21% Similarity=0.208 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040279 441 FNCLIDGLCKAGRLDNAWELFHKLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNG 503 (626)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 503 (626)
+...++....+|+-++-.++++.+.+. -+|++.....+..+|.+.|...++-+++.++-+.|
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333344444444444444444443332 13344444444444444444444444444444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.55 E-value=0.53 Score=33.95 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=34.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 040279 473 VVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNNKTSKVVELLHKMAE 536 (626)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (626)
...++..+.....+|+-++-.++++.+.+.+ .|++.....+..+|-+-|...++-+++.++-+
T Consensus 86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 86 NEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344444555555566555555655555543 55555555556666666666666666665555
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.36 E-value=0.07 Score=39.10 Aligned_cols=77 Identities=10% Similarity=-0.034 Sum_probs=56.6
Q ss_pred hhHHHHHHHHhhcC-CCCHHHHHHHHHHhHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040279 39 TQLNEFLHENCKSG-IINLNEARYFFGYMTHMQPSPPISSFNLLFGAVAKNRHYDAVISFYRKLVSIGLLPDFLTLNILI 117 (626)
Q Consensus 39 ~~~~~~l~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 117 (626)
++...+.-+++++. ..+.+.++.+|+.+.+.+|......+..|+.++.+.|++++|+..++.+++. .|+..-...+.
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~qA~~L~ 113 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGALK 113 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcHHHHHHH
Confidence 44444444454432 1357889999999988765434578888999999999999999999999987 77765555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.93 E-value=0.14 Score=37.38 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=40.0
Q ss_pred CCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCCH
Q 040279 471 PTVVTYSIMIHGLCRKG---KLEKANDFLLYMEKNGCAPNV-VTFNTLMHGFLQNNKTSKVVELLHKMAEPERNLVPDD 545 (626)
Q Consensus 471 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 545 (626)
|+..+-...+.+++++. +.++++.+++++.+.+ +.+. ..+-.+.-+|.+.|++++|.++++.+++ +.|+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~----ieP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE----HERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----cCCCc
Confidence 44555555555555543 3446666666666542 2232 3455555666667777777777777766 66653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.73 E-value=2.1 Score=29.15 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 040279 383 QAGYAQKLFDEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLID 446 (626)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (626)
+.-++.+-++.+...++.|++....+.+.+|.+.+++..|.++++.++... ..+...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 444566666666666777777777777777777777777777777666432 223445555543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.78 E-value=3.3 Score=28.14 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 040279 418 CVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFHKLPQ 466 (626)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (626)
+.-+..+-++.+......|++.+..+.+.+|.+.+++..|.++|+-+..
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555544
|